Multiple sequence alignment - TraesCS6D01G355200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G355200 chr6D 100.000 4695 0 0 1 4695 450109522 450114216 0.000000e+00 8671.0
1 TraesCS6D01G355200 chr6A 91.350 3919 223 59 1 3870 595623952 595627803 0.000000e+00 5252.0
2 TraesCS6D01G355200 chr6A 86.034 537 40 19 4181 4695 595627967 595628490 1.150000e-150 544.0
3 TraesCS6D01G355200 chr6A 91.045 67 5 1 4067 4133 595627903 595627968 6.470000e-14 89.8
4 TraesCS6D01G355200 chr6B 90.424 1650 103 29 579 2209 682559979 682561592 0.000000e+00 2121.0
5 TraesCS6D01G355200 chr6B 90.754 1287 92 18 2797 4065 682562347 682563624 0.000000e+00 1692.0
6 TraesCS6D01G355200 chr6B 95.308 682 29 3 2132 2812 682561650 682562329 0.000000e+00 1079.0
7 TraesCS6D01G355200 chr6B 96.990 598 17 1 1 597 682559325 682559922 0.000000e+00 1003.0
8 TraesCS6D01G355200 chr6B 87.602 613 54 14 4100 4695 682563621 682564228 0.000000e+00 691.0
9 TraesCS6D01G355200 chr6B 91.525 413 30 4 1373 1780 591787470 591787058 8.820000e-157 564.0
10 TraesCS6D01G355200 chr6B 90.821 414 33 4 1373 1781 83635686 83635273 2.470000e-152 549.0
11 TraesCS6D01G355200 chr6B 90.580 414 34 4 1373 1781 42693887 42694300 1.150000e-150 544.0
12 TraesCS6D01G355200 chr6B 94.872 78 3 1 2132 2209 682561583 682561659 2.290000e-23 121.0
13 TraesCS6D01G355200 chr4B 87.764 662 70 7 1127 1781 591213179 591213836 0.000000e+00 763.0
14 TraesCS6D01G355200 chr4A 88.293 615 61 9 1174 1781 731452997 731452387 0.000000e+00 726.0
15 TraesCS6D01G355200 chr4A 88.512 383 27 8 1127 1500 699840426 699840800 9.270000e-122 448.0
16 TraesCS6D01G355200 chr7B 86.679 563 62 12 1189 1739 18364868 18364307 3.110000e-171 612.0
17 TraesCS6D01G355200 chr1B 91.063 414 32 4 1373 1781 62849310 62848897 5.310000e-154 555.0
18 TraesCS6D01G355200 chr1B 91.063 414 32 4 1373 1781 585229313 585228900 5.310000e-154 555.0
19 TraesCS6D01G355200 chr1B 90.821 414 33 4 1373 1781 671753600 671753187 2.470000e-152 549.0
20 TraesCS6D01G355200 chr7A 90.821 414 33 4 1373 1781 38147679 38148092 2.470000e-152 549.0
21 TraesCS6D01G355200 chr5B 88.251 383 28 8 1127 1500 34585904 34585530 4.310000e-120 442.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G355200 chr6D 450109522 450114216 4694 False 8671.000000 8671 100.000000 1 4695 1 chr6D.!!$F1 4694
1 TraesCS6D01G355200 chr6A 595623952 595628490 4538 False 1961.933333 5252 89.476333 1 4695 3 chr6A.!!$F1 4694
2 TraesCS6D01G355200 chr6B 682559325 682564228 4903 False 1117.833333 2121 92.658333 1 4695 6 chr6B.!!$F2 4694
3 TraesCS6D01G355200 chr4B 591213179 591213836 657 False 763.000000 763 87.764000 1127 1781 1 chr4B.!!$F1 654
4 TraesCS6D01G355200 chr4A 731452387 731452997 610 True 726.000000 726 88.293000 1174 1781 1 chr4A.!!$R1 607
5 TraesCS6D01G355200 chr7B 18364307 18364868 561 True 612.000000 612 86.679000 1189 1739 1 chr7B.!!$R1 550

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 255 0.034896 TGCTCCCTTCGTGAACCTTC 59.965 55.0 0.00 0.00 0.00 3.46 F
488 509 0.469917 CAGGACAGTTGAGGTGGTGT 59.530 55.0 0.00 0.00 0.00 4.16 F
995 1096 0.623723 GGAAGATAAGGTGGTGGCCA 59.376 55.0 0.00 0.00 0.00 5.36 F
1557 1685 0.332632 TTTCATTCCTGGGGCCTCAG 59.667 55.0 27.05 27.05 34.70 3.35 F
2009 2140 0.254178 CTGGGCCACTCTAGTGCATT 59.746 55.0 0.00 0.00 44.34 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1534 1662 0.252239 GGCCCCAGGAATGAAAACCT 60.252 55.000 0.00 0.00 36.92 3.50 R
1541 1669 1.277580 ACTCTGAGGCCCCAGGAATG 61.278 60.000 15.13 5.32 34.99 2.67 R
1899 2029 1.527034 TGTTTCTGGAGATGCTGTGC 58.473 50.000 0.00 0.00 0.00 4.57 R
3089 3400 2.154462 CACCACTTTACAAGGCCTCAG 58.846 52.381 5.23 4.30 0.00 3.35 R
3857 4170 0.173708 CGGGACAGACACTAGCCTTC 59.826 60.000 0.00 0.00 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 147 0.407139 ATGCTCCTGTTTCAAGGCCT 59.593 50.000 0.00 0.00 37.24 5.19
229 250 1.837439 ACCATATGCTCCCTTCGTGAA 59.163 47.619 0.00 0.00 0.00 3.18
230 251 2.213499 CCATATGCTCCCTTCGTGAAC 58.787 52.381 0.00 0.00 0.00 3.18
231 252 2.213499 CATATGCTCCCTTCGTGAACC 58.787 52.381 0.00 0.00 0.00 3.62
232 253 1.568504 TATGCTCCCTTCGTGAACCT 58.431 50.000 0.00 0.00 0.00 3.50
233 254 0.693049 ATGCTCCCTTCGTGAACCTT 59.307 50.000 0.00 0.00 0.00 3.50
234 255 0.034896 TGCTCCCTTCGTGAACCTTC 59.965 55.000 0.00 0.00 0.00 3.46
235 256 0.673956 GCTCCCTTCGTGAACCTTCC 60.674 60.000 0.00 0.00 0.00 3.46
236 257 0.685097 CTCCCTTCGTGAACCTTCCA 59.315 55.000 0.00 0.00 0.00 3.53
237 258 1.279271 CTCCCTTCGTGAACCTTCCAT 59.721 52.381 0.00 0.00 0.00 3.41
238 259 1.278127 TCCCTTCGTGAACCTTCCATC 59.722 52.381 0.00 0.00 0.00 3.51
239 260 1.359848 CCTTCGTGAACCTTCCATCG 58.640 55.000 0.00 0.00 0.00 3.84
240 261 1.337823 CCTTCGTGAACCTTCCATCGT 60.338 52.381 0.00 0.00 0.00 3.73
241 262 1.726791 CTTCGTGAACCTTCCATCGTG 59.273 52.381 0.00 0.00 0.00 4.35
242 263 0.669318 TCGTGAACCTTCCATCGTGC 60.669 55.000 0.00 0.00 0.00 5.34
279 300 1.860950 CTCTGGTAATTCGTGGCATCG 59.139 52.381 0.00 0.00 0.00 3.84
307 328 7.441157 TCTGTTCTTTGTTGGTCTACTGTAATG 59.559 37.037 0.00 0.00 0.00 1.90
312 333 3.187700 GTTGGTCTACTGTAATGCCGAG 58.812 50.000 0.00 0.00 0.00 4.63
327 348 2.094390 TGCCGAGCTCGTGTATTTACTT 60.094 45.455 32.41 0.00 37.74 2.24
329 350 3.114065 CCGAGCTCGTGTATTTACTTCC 58.886 50.000 32.41 0.00 37.74 3.46
488 509 0.469917 CAGGACAGTTGAGGTGGTGT 59.530 55.000 0.00 0.00 0.00 4.16
489 510 0.469917 AGGACAGTTGAGGTGGTGTG 59.530 55.000 0.00 0.00 0.00 3.82
672 769 6.618166 GCATGCTTATCTATTTTCTGAGCTCG 60.618 42.308 11.37 4.19 0.00 5.03
842 941 6.801539 TCCTGTTTTGCTATTCAGTTAGTG 57.198 37.500 0.00 0.00 0.00 2.74
876 976 4.944048 ACTAAAAACAGATTTGTGTGGCC 58.056 39.130 0.00 0.00 37.67 5.36
894 994 0.901580 CCTTGGGCCTGCTTGACAAT 60.902 55.000 4.53 0.00 0.00 2.71
928 1029 0.754957 CAGCCCAACCCAAGTGACAA 60.755 55.000 0.00 0.00 0.00 3.18
935 1036 2.143876 ACCCAAGTGACAAAACTGCT 57.856 45.000 0.00 0.00 0.00 4.24
966 1067 3.330267 CACTGGAGTTACTTCTTGAGCC 58.670 50.000 0.00 0.00 0.00 4.70
976 1077 2.847327 TTCTTGAGCCACAGGAAGAG 57.153 50.000 2.79 0.00 39.16 2.85
993 1094 1.840635 AGAGGAAGATAAGGTGGTGGC 59.159 52.381 0.00 0.00 0.00 5.01
994 1095 0.919710 AGGAAGATAAGGTGGTGGCC 59.080 55.000 0.00 0.00 0.00 5.36
995 1096 0.623723 GGAAGATAAGGTGGTGGCCA 59.376 55.000 0.00 0.00 0.00 5.36
996 1097 1.408822 GGAAGATAAGGTGGTGGCCAG 60.409 57.143 5.11 0.00 32.34 4.85
997 1098 0.625849 AAGATAAGGTGGTGGCCAGG 59.374 55.000 5.11 0.00 32.34 4.45
1076 1177 2.124507 CTGTTCCTTTCCCGCCTCCA 62.125 60.000 0.00 0.00 0.00 3.86
1095 1196 3.441290 CCTCCGACTTCGCCTCGT 61.441 66.667 0.00 0.00 38.18 4.18
1297 1407 1.045911 GTCGCCTCCTCCCTGAATCT 61.046 60.000 0.00 0.00 0.00 2.40
1319 1429 4.498241 TCTCTGCTTTGCTACTGTATGTG 58.502 43.478 0.00 0.00 0.00 3.21
1332 1453 5.073311 ACTGTATGTGTGTATGGACTGTC 57.927 43.478 0.00 0.00 0.00 3.51
1333 1454 4.081642 ACTGTATGTGTGTATGGACTGTCC 60.082 45.833 19.96 19.96 36.96 4.02
1365 1486 2.598589 CCGGCTGTTGAAATGAATGTG 58.401 47.619 0.00 0.00 0.00 3.21
1524 1652 1.136984 GAGGGTGCGTCGTCTGTAG 59.863 63.158 0.00 0.00 0.00 2.74
1528 1656 1.058404 GGTGCGTCGTCTGTAGAAAC 58.942 55.000 0.00 0.00 0.00 2.78
1532 1660 2.223641 TGCGTCGTCTGTAGAAACAACT 60.224 45.455 0.00 0.00 34.49 3.16
1534 1662 3.624900 CGTCGTCTGTAGAAACAACTGA 58.375 45.455 0.00 0.00 34.49 3.41
1541 1669 6.509677 CGTCTGTAGAAACAACTGAGGTTTTC 60.510 42.308 0.00 0.00 38.50 2.29
1546 1674 6.149129 AGAAACAACTGAGGTTTTCATTCC 57.851 37.500 7.52 0.00 38.50 3.01
1557 1685 0.332632 TTTCATTCCTGGGGCCTCAG 59.667 55.000 27.05 27.05 34.70 3.35
1566 1694 2.753029 GGGCCTCAGAGTGCAGTT 59.247 61.111 0.84 0.00 0.00 3.16
1762 1891 2.871453 TCTGCTTGGCATGCATGATAT 58.129 42.857 30.64 0.00 38.13 1.63
1791 1920 4.226846 AGTGATTCTGGACCAGATGATGTT 59.773 41.667 24.85 7.01 40.39 2.71
1807 1936 4.820897 TGATGTTCTTCAATCAGTAGCGT 58.179 39.130 0.00 0.00 0.00 5.07
1808 1937 5.237815 TGATGTTCTTCAATCAGTAGCGTT 58.762 37.500 0.00 0.00 0.00 4.84
1835 1965 4.339872 TTGCCAAACATGATTTGCTCTT 57.660 36.364 12.09 0.00 0.00 2.85
1853 1983 6.053650 TGCTCTTTCTGTATCCATGATTCTG 58.946 40.000 0.00 0.00 0.00 3.02
1947 2078 4.637483 TCCAAACAACTTCTGCTTTCAG 57.363 40.909 0.00 0.00 41.67 3.02
2003 2134 2.392662 TCTGAATCTGGGCCACTCTAG 58.607 52.381 0.00 0.00 0.00 2.43
2009 2140 0.254178 CTGGGCCACTCTAGTGCATT 59.746 55.000 0.00 0.00 44.34 3.56
2039 2171 7.510549 ACAATGTAACAGCTAAGTTGACATT 57.489 32.000 13.15 13.15 36.84 2.71
2055 2187 8.284945 AGTTGACATTAATATTGCACAGATGT 57.715 30.769 0.00 0.00 0.00 3.06
2168 2439 7.344093 TGGAGTCTTATGAACTCTGAATCTCAT 59.656 37.037 3.55 0.00 33.26 2.90
2349 2620 2.325583 TGACGGCAACTGTTTCTTCT 57.674 45.000 0.00 0.00 0.00 2.85
2566 2838 3.756434 CCTCCGAGCTTTTTGGAAATACA 59.244 43.478 0.00 0.00 38.96 2.29
2837 3144 2.428171 ACAACATCTATGTGGCCATTGC 59.572 45.455 9.72 0.00 41.61 3.56
2880 3190 2.228343 GCATGCTTCTTCTGCTGTTCTT 59.772 45.455 11.37 0.00 33.15 2.52
2921 3232 6.013725 TCCCTTGCTCTTTTAGACTTGTGATA 60.014 38.462 0.00 0.00 0.00 2.15
2946 3257 5.012239 TGTAAAATTTGATCTCAGCTGGCT 58.988 37.500 15.13 0.00 0.00 4.75
3089 3400 7.454260 AAGGATTGGAAACATTCAGTAAGTC 57.546 36.000 0.00 0.00 41.41 3.01
3093 3404 7.148340 GGATTGGAAACATTCAGTAAGTCTGAG 60.148 40.741 0.00 0.00 44.80 3.35
3113 3424 4.532916 TGAGGCCTTGTAAAGTGGTGTATA 59.467 41.667 6.77 0.00 44.25 1.47
3239 3550 4.861196 AGTAAGGCATCTCTCACTGACTA 58.139 43.478 0.00 0.00 28.16 2.59
3281 3594 4.582701 AGCTCGGAAGAAGTATCATCAG 57.417 45.455 0.00 0.00 41.32 2.90
3285 3598 5.757886 CTCGGAAGAAGTATCATCAGAGAC 58.242 45.833 5.64 0.00 43.65 3.36
3297 3610 3.054875 TCATCAGAGACCATGGTTTCCAG 60.055 47.826 27.28 20.98 36.75 3.86
3334 3647 0.392998 ATCGGCACTGGCACCTTAAG 60.393 55.000 3.16 0.00 43.71 1.85
3372 3685 1.823250 GCTGAACCCCAAATGTGAGGT 60.823 52.381 0.00 0.00 0.00 3.85
3383 3696 7.039293 ACCCCAAATGTGAGGTTAAACTAATTC 60.039 37.037 0.00 0.00 0.00 2.17
3492 3805 7.166851 CCTCCTAAGCAACATCATCTCATAAT 58.833 38.462 0.00 0.00 0.00 1.28
3637 3950 1.118356 TTGGCGGCAGAAAATTGGGT 61.118 50.000 12.87 0.00 0.00 4.51
3664 3977 1.219124 GGAAGGCATGACGAGCTCA 59.781 57.895 15.40 0.00 0.00 4.26
3697 4010 9.289782 GGATACAAGCACTTCAAAATATAGGAT 57.710 33.333 0.00 0.00 0.00 3.24
3732 4045 2.808315 GCTCGAAGCCTCCGATCA 59.192 61.111 0.00 0.00 34.48 2.92
3747 4060 2.891941 GATCAATCACGCAGCCCCCA 62.892 60.000 0.00 0.00 0.00 4.96
3751 4064 1.606885 AATCACGCAGCCCCCAAATG 61.607 55.000 0.00 0.00 0.00 2.32
3771 4084 8.720562 CCAAATGGTCCAGATAAATTTTGTTTC 58.279 33.333 0.00 0.00 0.00 2.78
3795 4108 0.457851 CGAGTTAGGAGCAGTCCCAG 59.542 60.000 0.00 0.00 45.26 4.45
3821 4134 0.819666 GGACCGGCTGGATTTGGATC 60.820 60.000 21.41 2.61 39.21 3.36
3826 4139 2.472059 GCTGGATTTGGATCGCGCA 61.472 57.895 8.75 0.00 32.84 6.09
3834 4147 1.360931 TTGGATCGCGCACTCATGTG 61.361 55.000 8.75 0.00 46.37 3.21
3873 4186 3.723554 CCGAAGGCTAGTGTCTGTC 57.276 57.895 0.00 0.00 46.14 3.51
3875 4188 0.173708 CGAAGGCTAGTGTCTGTCCC 59.826 60.000 0.00 0.00 0.00 4.46
3876 4189 0.173708 GAAGGCTAGTGTCTGTCCCG 59.826 60.000 0.00 0.00 0.00 5.14
3877 4190 1.258445 AAGGCTAGTGTCTGTCCCGG 61.258 60.000 0.00 0.00 0.00 5.73
3878 4191 2.184579 GCTAGTGTCTGTCCCGGC 59.815 66.667 0.00 0.00 0.00 6.13
3879 4192 2.352032 GCTAGTGTCTGTCCCGGCT 61.352 63.158 0.00 0.00 0.00 5.52
3880 4193 1.035932 GCTAGTGTCTGTCCCGGCTA 61.036 60.000 0.00 0.00 0.00 3.93
3881 4194 1.693627 CTAGTGTCTGTCCCGGCTAT 58.306 55.000 0.00 0.00 0.00 2.97
3882 4195 2.860009 CTAGTGTCTGTCCCGGCTATA 58.140 52.381 0.00 0.00 0.00 1.31
3883 4196 1.693627 AGTGTCTGTCCCGGCTATAG 58.306 55.000 0.00 0.00 0.00 1.31
3884 4197 1.063867 AGTGTCTGTCCCGGCTATAGT 60.064 52.381 0.00 0.00 0.00 2.12
3885 4198 1.067212 GTGTCTGTCCCGGCTATAGTG 59.933 57.143 0.00 0.00 0.00 2.74
3886 4199 0.032267 GTCTGTCCCGGCTATAGTGC 59.968 60.000 0.00 0.00 0.00 4.40
3928 4243 2.162681 GCTCTTTGGCTGCTTTCCTTA 58.837 47.619 0.00 0.00 0.00 2.69
3929 4244 2.163211 GCTCTTTGGCTGCTTTCCTTAG 59.837 50.000 0.00 0.00 0.00 2.18
3934 4249 3.093278 CTGCTTTCCTTAGCCGCG 58.907 61.111 0.00 0.00 40.49 6.46
3945 4260 0.937304 TTAGCCGCGAAGATGCATTC 59.063 50.000 8.23 0.00 34.15 2.67
3965 4280 2.237143 TCGCAAAGAAGGTGGATGAGAT 59.763 45.455 0.00 0.00 0.00 2.75
4007 4323 1.168714 GTTGCCTCCTTTGCTAGTGG 58.831 55.000 0.00 0.00 0.00 4.00
4015 4331 2.438021 TCCTTTGCTAGTGGTGTCAAGT 59.562 45.455 0.00 0.00 0.00 3.16
4058 4379 1.887956 GCCACTCCATTCCTCAAGCAA 60.888 52.381 0.00 0.00 0.00 3.91
4061 4382 3.512724 CCACTCCATTCCTCAAGCAATTT 59.487 43.478 0.00 0.00 0.00 1.82
4062 4383 4.491676 CACTCCATTCCTCAAGCAATTTG 58.508 43.478 0.00 0.00 38.17 2.32
4063 4384 3.056322 ACTCCATTCCTCAAGCAATTTGC 60.056 43.478 13.55 13.55 45.46 3.68
4064 4385 2.234414 TCCATTCCTCAAGCAATTTGCC 59.766 45.455 17.51 0.52 46.52 4.52
4065 4386 2.264813 CATTCCTCAAGCAATTTGCCG 58.735 47.619 17.51 9.62 46.52 5.69
4072 4393 1.129064 CAAGCAATTTGCCGAAATGCC 59.871 47.619 17.51 0.00 46.52 4.40
4081 4402 1.369091 GCCGAAATGCCGAGTGATGT 61.369 55.000 0.00 0.00 0.00 3.06
4085 4406 2.352651 CGAAATGCCGAGTGATGTTGAT 59.647 45.455 0.00 0.00 0.00 2.57
4088 4409 3.827008 ATGCCGAGTGATGTTGATAGT 57.173 42.857 0.00 0.00 0.00 2.12
4145 4466 2.433664 CGGTGACCGTTGGTAGCC 60.434 66.667 17.28 0.00 42.73 3.93
4146 4467 2.745037 GGTGACCGTTGGTAGCCA 59.255 61.111 0.00 0.00 35.25 4.75
4147 4468 1.071814 GGTGACCGTTGGTAGCCAA 59.928 57.895 0.00 0.00 41.69 4.52
4148 4469 0.953960 GGTGACCGTTGGTAGCCAAG 60.954 60.000 0.22 0.00 44.82 3.61
4149 4470 0.034337 GTGACCGTTGGTAGCCAAGA 59.966 55.000 0.22 0.00 44.82 3.02
4150 4471 0.981183 TGACCGTTGGTAGCCAAGAT 59.019 50.000 0.22 0.00 44.82 2.40
4151 4472 1.338674 TGACCGTTGGTAGCCAAGATG 60.339 52.381 0.22 0.00 44.82 2.90
4152 4473 0.676782 ACCGTTGGTAGCCAAGATGC 60.677 55.000 0.22 0.00 44.82 3.91
4153 4474 0.676466 CCGTTGGTAGCCAAGATGCA 60.676 55.000 0.22 0.00 44.82 3.96
4154 4475 1.164411 CGTTGGTAGCCAAGATGCAA 58.836 50.000 0.22 0.00 44.82 4.08
4155 4476 1.131126 CGTTGGTAGCCAAGATGCAAG 59.869 52.381 0.22 0.00 44.82 4.01
4156 4477 1.474077 GTTGGTAGCCAAGATGCAAGG 59.526 52.381 0.22 0.00 44.82 3.61
4157 4478 0.034186 TGGTAGCCAAGATGCAAGGG 60.034 55.000 0.00 0.00 0.00 3.95
4158 4479 1.387295 GGTAGCCAAGATGCAAGGGC 61.387 60.000 11.90 11.90 46.77 5.19
4160 4481 3.704151 GCCAAGATGCAAGGGCTT 58.296 55.556 12.39 2.20 43.09 4.35
4161 4482 1.514553 GCCAAGATGCAAGGGCTTC 59.485 57.895 12.39 0.00 43.09 3.86
4162 4483 1.252904 GCCAAGATGCAAGGGCTTCA 61.253 55.000 12.39 0.00 44.33 3.02
4163 4484 0.529378 CCAAGATGCAAGGGCTTCAC 59.471 55.000 0.00 0.00 44.33 3.18
4164 4485 0.529378 CAAGATGCAAGGGCTTCACC 59.471 55.000 0.00 0.00 44.33 4.02
4165 4486 0.112995 AAGATGCAAGGGCTTCACCA 59.887 50.000 0.00 0.00 44.33 4.17
4166 4487 0.333993 AGATGCAAGGGCTTCACCAT 59.666 50.000 0.00 0.00 44.33 3.55
4167 4488 0.743097 GATGCAAGGGCTTCACCATC 59.257 55.000 0.00 0.00 42.19 3.51
4168 4489 0.333993 ATGCAAGGGCTTCACCATCT 59.666 50.000 0.00 0.00 42.05 2.90
4169 4490 0.991146 TGCAAGGGCTTCACCATCTA 59.009 50.000 0.00 0.00 42.05 1.98
4170 4491 1.565759 TGCAAGGGCTTCACCATCTAT 59.434 47.619 0.00 0.00 42.05 1.98
4171 4492 1.952296 GCAAGGGCTTCACCATCTATG 59.048 52.381 0.00 0.00 42.05 2.23
4172 4493 3.332623 GCAAGGGCTTCACCATCTATGG 61.333 54.545 7.46 7.46 44.85 2.74
4277 4647 5.140454 GGCTTCATGGGTCTTTATGGTTAT 58.860 41.667 0.00 0.00 0.00 1.89
4299 4669 5.568685 TGAGAGTTTGAGAGGTAGAATCG 57.431 43.478 0.00 0.00 0.00 3.34
4334 4706 7.931994 GCATTTTCATGTGGTTGGACTTCAAC 61.932 42.308 0.00 0.69 42.29 3.18
4375 4749 2.680841 CCCGCGAATGAACCAAGATTTA 59.319 45.455 8.23 0.00 0.00 1.40
4391 4767 9.190317 ACCAAGATTTAGGGAATTGAGTTTATC 57.810 33.333 0.00 0.00 0.00 1.75
4418 4794 7.497925 ACTTGTGTTTTTCTATCCTCTGTTC 57.502 36.000 0.00 0.00 0.00 3.18
4430 4806 7.661968 TCTATCCTCTGTTCATATGTTGCTAC 58.338 38.462 1.90 0.00 0.00 3.58
4460 4836 1.102154 TGTGTTGCAGAGTTTGGGTG 58.898 50.000 0.00 0.00 0.00 4.61
4467 4843 1.334869 GCAGAGTTTGGGTGTCTTGTG 59.665 52.381 0.00 0.00 0.00 3.33
4468 4844 2.917933 CAGAGTTTGGGTGTCTTGTGA 58.082 47.619 0.00 0.00 0.00 3.58
4501 4877 4.487948 CGATGAATCAACATGGCAAGTTT 58.512 39.130 5.20 0.00 0.00 2.66
4577 4953 6.299141 ACAACACTAGACATGTCCTTGAAAT 58.701 36.000 22.21 4.50 0.00 2.17
4581 4957 6.980978 ACACTAGACATGTCCTTGAAATATCG 59.019 38.462 22.21 0.00 0.00 2.92
4586 4962 5.984725 ACATGTCCTTGAAATATCGTACCA 58.015 37.500 0.00 0.00 0.00 3.25
4594 4970 7.228906 TCCTTGAAATATCGTACCAAAACACAA 59.771 33.333 0.00 0.00 0.00 3.33
4603 4979 1.756538 ACCAAAACACAAGCCTTCAGG 59.243 47.619 0.00 0.00 38.53 3.86
4605 4981 2.430332 CCAAAACACAAGCCTTCAGGAA 59.570 45.455 0.00 0.00 37.39 3.36
4640 5021 3.996150 AGCATGACTTGAAACAACAGG 57.004 42.857 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
146 147 2.493030 GCAGACGCCGGTAAGCTA 59.507 61.111 1.90 0.00 0.00 3.32
231 252 1.369625 GTACCCTTGCACGATGGAAG 58.630 55.000 10.68 10.68 44.12 3.46
232 253 0.390603 CGTACCCTTGCACGATGGAA 60.391 55.000 0.00 0.00 40.56 3.53
233 254 1.216977 CGTACCCTTGCACGATGGA 59.783 57.895 0.00 0.00 40.56 3.41
234 255 0.390603 TTCGTACCCTTGCACGATGG 60.391 55.000 0.00 0.00 45.67 3.51
235 256 1.127951 GTTTCGTACCCTTGCACGATG 59.872 52.381 0.00 0.00 45.67 3.84
236 257 1.270412 TGTTTCGTACCCTTGCACGAT 60.270 47.619 0.00 0.00 45.67 3.73
237 258 0.104487 TGTTTCGTACCCTTGCACGA 59.896 50.000 0.00 0.00 44.80 4.35
238 259 0.233848 GTGTTTCGTACCCTTGCACG 59.766 55.000 0.00 0.00 39.48 5.34
239 260 1.003223 GTGTGTTTCGTACCCTTGCAC 60.003 52.381 0.00 0.00 0.00 4.57
240 261 1.134340 AGTGTGTTTCGTACCCTTGCA 60.134 47.619 0.00 0.00 0.00 4.08
241 262 1.529865 GAGTGTGTTTCGTACCCTTGC 59.470 52.381 0.00 0.00 0.00 4.01
242 263 2.800544 CAGAGTGTGTTTCGTACCCTTG 59.199 50.000 0.00 0.00 0.00 3.61
279 300 4.212214 CAGTAGACCAACAAAGAACAGAGC 59.788 45.833 0.00 0.00 0.00 4.09
307 328 2.205307 AGTAAATACACGAGCTCGGC 57.795 50.000 36.93 16.79 44.95 5.54
312 333 7.766219 TTTGATAGGAAGTAAATACACGAGC 57.234 36.000 0.00 0.00 0.00 5.03
327 348 6.928492 GCACCTGAAAACAATTTTTGATAGGA 59.072 34.615 0.00 0.00 34.94 2.94
329 350 7.120789 GGCACCTGAAAACAATTTTTGATAG 57.879 36.000 0.00 0.00 34.94 2.08
488 509 0.817634 CCGGCTGACAAGGTGTTTCA 60.818 55.000 0.00 0.00 0.00 2.69
489 510 0.534203 TCCGGCTGACAAGGTGTTTC 60.534 55.000 0.00 0.00 0.00 2.78
501 522 0.249657 GTCCTGCTTCTATCCGGCTG 60.250 60.000 0.00 0.00 0.00 4.85
576 597 7.426929 AATTGAGTTAGCACACTCTTAACTG 57.573 36.000 14.46 0.00 43.32 3.16
577 598 9.155975 CATAATTGAGTTAGCACACTCTTAACT 57.844 33.333 14.46 4.75 43.32 2.24
672 769 3.756434 TGCCTATTTGTTGCTACCTTGTC 59.244 43.478 0.00 0.00 0.00 3.18
775 874 8.206189 ACTCAGAAAAACATCCACATTTCAAAT 58.794 29.630 0.00 0.00 34.91 2.32
776 875 7.555087 ACTCAGAAAAACATCCACATTTCAAA 58.445 30.769 0.00 0.00 34.91 2.69
783 882 6.650807 GTCATCTACTCAGAAAAACATCCACA 59.349 38.462 0.00 0.00 33.50 4.17
855 954 5.200368 AGGCCACACAAATCTGTTTTTAG 57.800 39.130 5.01 0.00 31.64 1.85
876 976 0.971386 AATTGTCAAGCAGGCCCAAG 59.029 50.000 0.00 0.00 0.00 3.61
886 986 3.005540 GCCCGGCCCAATTGTCAAG 62.006 63.158 4.43 0.00 0.00 3.02
905 1006 1.531602 ACTTGGGTTGGGCTGCTTC 60.532 57.895 0.00 0.00 0.00 3.86
928 1029 3.149196 CAGTGGGTCAATACAGCAGTTT 58.851 45.455 0.00 0.00 0.00 2.66
935 1036 4.164981 AGTAACTCCAGTGGGTCAATACA 58.835 43.478 9.92 0.00 34.93 2.29
966 1067 4.383552 CCACCTTATCTTCCTCTTCCTGTG 60.384 50.000 0.00 0.00 0.00 3.66
976 1077 0.623723 TGGCCACCACCTTATCTTCC 59.376 55.000 0.00 0.00 0.00 3.46
1047 1148 2.228103 GGAAAGGAACAGGGTTTTAGCG 59.772 50.000 0.00 0.00 0.00 4.26
1288 1398 2.015587 GCAAAGCAGAGAGATTCAGGG 58.984 52.381 0.00 0.00 0.00 4.45
1297 1407 4.021104 ACACATACAGTAGCAAAGCAGAGA 60.021 41.667 0.00 0.00 0.00 3.10
1319 1429 2.450609 AACACGGACAGTCCATACAC 57.549 50.000 20.13 0.00 35.91 2.90
1333 1454 2.046314 AGCCGGGATCCAAACACG 60.046 61.111 15.23 7.25 0.00 4.49
1365 1486 2.966050 CTAACTGAGCAGAGGGTTCAC 58.034 52.381 4.21 0.00 32.86 3.18
1516 1639 3.978687 ACCTCAGTTGTTTCTACAGACG 58.021 45.455 0.00 0.00 35.28 4.18
1517 1640 6.315393 TGAAAACCTCAGTTGTTTCTACAGAC 59.685 38.462 0.00 0.00 34.97 3.51
1524 1652 5.979517 CAGGAATGAAAACCTCAGTTGTTTC 59.020 40.000 0.00 0.00 37.52 2.78
1528 1656 3.256631 CCCAGGAATGAAAACCTCAGTTG 59.743 47.826 0.00 0.00 37.52 3.16
1532 1660 1.549950 GCCCCAGGAATGAAAACCTCA 60.550 52.381 0.00 0.00 38.81 3.86
1534 1662 0.252239 GGCCCCAGGAATGAAAACCT 60.252 55.000 0.00 0.00 36.92 3.50
1541 1669 1.277580 ACTCTGAGGCCCCAGGAATG 61.278 60.000 15.13 5.32 34.99 2.67
1546 1674 3.324930 TGCACTCTGAGGCCCCAG 61.325 66.667 8.22 8.22 35.55 4.45
1566 1694 6.935167 TCTACAATTTCAGTACAGCAGATGA 58.065 36.000 0.00 0.00 0.00 2.92
1681 1809 3.181465 ACTCTCGGAAGCTGACTTTGAAA 60.181 43.478 0.00 0.00 35.82 2.69
1762 1891 6.213397 TCATCTGGTCCAGAATCACTTTAAGA 59.787 38.462 25.37 7.92 44.04 2.10
1791 1920 7.465916 GCAATGAATAACGCTACTGATTGAAGA 60.466 37.037 0.00 0.00 0.00 2.87
1807 1936 6.879993 AGCAAATCATGTTTGGCAATGAATAA 59.120 30.769 16.43 0.00 0.00 1.40
1808 1937 6.408035 AGCAAATCATGTTTGGCAATGAATA 58.592 32.000 16.43 0.00 0.00 1.75
1899 2029 1.527034 TGTTTCTGGAGATGCTGTGC 58.473 50.000 0.00 0.00 0.00 4.57
1947 2078 6.705825 AGTTTGAAAAATGGGAAATACTGCAC 59.294 34.615 0.00 0.00 0.00 4.57
2003 2134 6.808212 AGCTGTTACATTGTTGATTAATGCAC 59.192 34.615 0.00 0.00 38.72 4.57
2009 2140 9.278978 TCAACTTAGCTGTTACATTGTTGATTA 57.721 29.630 0.00 0.00 37.97 1.75
2084 2220 5.347093 CACTGCTATCATCATATCAACGTCC 59.653 44.000 0.00 0.00 0.00 4.79
2168 2439 7.176515 TGAAGCTGCAAGGATACAAAGATAAAA 59.823 33.333 1.02 0.00 41.41 1.52
2349 2620 4.227300 ACATACCAAGCCTGAATAACCTGA 59.773 41.667 0.00 0.00 0.00 3.86
2566 2838 9.515020 CACCGAATATAATGTGCAAACTATTTT 57.485 29.630 0.00 0.00 0.00 1.82
2837 3144 8.800972 CATGCAAGCTTTACATACATAAACTTG 58.199 33.333 10.61 0.00 36.91 3.16
2880 3190 9.034800 AGAGCAAGGGAAAAACATAAATATCAA 57.965 29.630 0.00 0.00 0.00 2.57
2921 3232 6.154021 AGCCAGCTGAGATCAAATTTTACAAT 59.846 34.615 17.39 0.00 0.00 2.71
2946 3257 4.072131 GGTCAAAGTCCAGCATTGAGTTA 58.928 43.478 0.00 0.00 35.76 2.24
3089 3400 2.154462 CACCACTTTACAAGGCCTCAG 58.846 52.381 5.23 4.30 0.00 3.35
3093 3404 4.840271 AGTATACACCACTTTACAAGGCC 58.160 43.478 5.50 0.00 0.00 5.19
3239 3550 7.098074 AGCTAAACTGCTACGTATTCTACTT 57.902 36.000 0.00 0.00 42.10 2.24
3281 3594 4.553330 TCTAACTGGAAACCATGGTCTC 57.447 45.455 20.07 14.77 30.82 3.36
3285 3598 4.158394 CCACAATCTAACTGGAAACCATGG 59.842 45.833 11.19 11.19 30.82 3.66
3297 3610 5.758296 TGCCGATTTATCTCCACAATCTAAC 59.242 40.000 0.00 0.00 0.00 2.34
3334 3647 5.818136 TCAGCTAATAAATGGTTGCAGAC 57.182 39.130 0.00 0.00 0.00 3.51
3383 3696 6.039382 ACAAAAAGCTGGTAGTTTGGTTCTAG 59.961 38.462 15.81 0.00 35.69 2.43
3465 3778 2.158696 AGATGATGTTGCTTAGGAGGGC 60.159 50.000 0.00 0.00 0.00 5.19
3637 3950 0.547471 TCATGCCTTCCTCCCAGTCA 60.547 55.000 0.00 0.00 0.00 3.41
3664 3977 5.939764 TGAAGTGCTTGTATCCATAGTCT 57.060 39.130 0.00 0.00 0.00 3.24
3697 4010 0.878416 GCCGCATACCACTTGTTGAA 59.122 50.000 0.00 0.00 0.00 2.69
3730 4043 2.705312 TTTGGGGGCTGCGTGATTGA 62.705 55.000 0.00 0.00 0.00 2.57
3731 4044 1.606885 ATTTGGGGGCTGCGTGATTG 61.607 55.000 0.00 0.00 0.00 2.67
3732 4045 1.305213 ATTTGGGGGCTGCGTGATT 60.305 52.632 0.00 0.00 0.00 2.57
3747 4060 7.602265 CCGAAACAAAATTTATCTGGACCATTT 59.398 33.333 0.00 0.00 0.00 2.32
3751 4064 6.262193 TCCGAAACAAAATTTATCTGGACC 57.738 37.500 0.00 0.00 0.00 4.46
3771 4084 0.526662 ACTGCTCCTAACTCGTTCCG 59.473 55.000 0.00 0.00 0.00 4.30
3787 4100 3.385384 TCCTGCGAGCTGGGACTG 61.385 66.667 18.66 0.00 35.98 3.51
3799 4112 2.044946 AAATCCAGCCGGTCCTGC 60.045 61.111 1.90 0.00 0.00 4.85
3857 4170 0.173708 CGGGACAGACACTAGCCTTC 59.826 60.000 0.00 0.00 0.00 3.46
3870 4183 3.546009 GGCACTATAGCCGGGACA 58.454 61.111 2.18 0.00 46.12 4.02
3877 4190 4.199310 TCTTGACCATTTGGCACTATAGC 58.801 43.478 0.00 0.00 39.32 2.97
3878 4191 4.274459 GCTCTTGACCATTTGGCACTATAG 59.726 45.833 0.00 0.00 39.32 1.31
3879 4192 4.199310 GCTCTTGACCATTTGGCACTATA 58.801 43.478 0.00 0.00 39.32 1.31
3880 4193 3.019564 GCTCTTGACCATTTGGCACTAT 58.980 45.455 0.00 0.00 39.32 2.12
3881 4194 2.224744 TGCTCTTGACCATTTGGCACTA 60.225 45.455 0.00 0.00 39.32 2.74
3882 4195 1.251251 GCTCTTGACCATTTGGCACT 58.749 50.000 0.00 0.00 39.32 4.40
3883 4196 0.961019 TGCTCTTGACCATTTGGCAC 59.039 50.000 0.00 0.00 39.32 5.01
3884 4197 1.927487 ATGCTCTTGACCATTTGGCA 58.073 45.000 0.00 0.00 39.32 4.92
3885 4198 3.282021 TCTATGCTCTTGACCATTTGGC 58.718 45.455 0.00 0.00 39.32 4.52
3886 4199 3.881688 CCTCTATGCTCTTGACCATTTGG 59.118 47.826 0.00 0.00 42.17 3.28
3887 4200 3.314635 GCCTCTATGCTCTTGACCATTTG 59.685 47.826 0.00 0.00 0.00 2.32
3888 4201 3.201708 AGCCTCTATGCTCTTGACCATTT 59.798 43.478 0.00 0.00 36.75 2.32
3928 4243 2.528743 CGAATGCATCTTCGCGGCT 61.529 57.895 6.13 0.00 41.21 5.52
3929 4244 2.052766 CGAATGCATCTTCGCGGC 60.053 61.111 6.13 0.79 41.21 6.53
3945 4260 2.099141 TCTCATCCACCTTCTTTGCG 57.901 50.000 0.00 0.00 0.00 4.85
3947 4262 6.825213 TGTGAATATCTCATCCACCTTCTTTG 59.175 38.462 0.00 0.00 36.14 2.77
3948 4263 6.962182 TGTGAATATCTCATCCACCTTCTTT 58.038 36.000 0.00 0.00 36.14 2.52
3949 4264 6.566079 TGTGAATATCTCATCCACCTTCTT 57.434 37.500 0.00 0.00 36.14 2.52
3965 4280 6.542821 ACCTTCAACTCCAAAGATGTGAATA 58.457 36.000 0.00 0.00 0.00 1.75
4007 4323 5.297547 TCATTTACTGGACTGACTTGACAC 58.702 41.667 0.00 0.00 0.00 3.67
4015 4331 3.998913 TGCCATCATTTACTGGACTGA 57.001 42.857 0.00 0.00 34.24 3.41
4058 4379 0.171007 CACTCGGCATTTCGGCAAAT 59.829 50.000 0.00 0.00 41.26 2.32
4061 4382 1.078497 ATCACTCGGCATTTCGGCA 60.078 52.632 0.00 0.00 41.26 5.69
4062 4383 1.353103 CATCACTCGGCATTTCGGC 59.647 57.895 0.00 0.00 0.00 5.54
4063 4384 1.086696 AACATCACTCGGCATTTCGG 58.913 50.000 0.00 0.00 0.00 4.30
4064 4385 1.731709 TCAACATCACTCGGCATTTCG 59.268 47.619 0.00 0.00 0.00 3.46
4065 4386 4.572389 ACTATCAACATCACTCGGCATTTC 59.428 41.667 0.00 0.00 0.00 2.17
4072 4393 4.366586 AGCATCACTATCAACATCACTCG 58.633 43.478 0.00 0.00 0.00 4.18
4081 4402 3.054875 AGGCACTGAAGCATCACTATCAA 60.055 43.478 0.00 0.00 37.18 2.57
4085 4406 1.208052 GGAGGCACTGAAGCATCACTA 59.792 52.381 11.86 0.00 46.34 2.74
4088 4409 0.035725 CAGGAGGCACTGAAGCATCA 60.036 55.000 11.86 0.00 46.34 3.07
4130 4451 0.034337 TCTTGGCTACCAACGGTCAC 59.966 55.000 0.00 0.00 38.75 3.67
4131 4452 0.981183 ATCTTGGCTACCAACGGTCA 59.019 50.000 0.00 0.00 38.75 4.02
4132 4453 1.369625 CATCTTGGCTACCAACGGTC 58.630 55.000 0.00 0.00 38.75 4.79
4133 4454 0.676782 GCATCTTGGCTACCAACGGT 60.677 55.000 0.00 0.00 38.75 4.83
4134 4455 0.676466 TGCATCTTGGCTACCAACGG 60.676 55.000 0.00 0.00 38.75 4.44
4135 4456 1.131126 CTTGCATCTTGGCTACCAACG 59.869 52.381 0.00 0.00 38.75 4.10
4136 4457 1.474077 CCTTGCATCTTGGCTACCAAC 59.526 52.381 0.00 0.00 38.75 3.77
4137 4458 1.616725 CCCTTGCATCTTGGCTACCAA 60.617 52.381 0.00 0.00 41.69 3.67
4138 4459 0.034186 CCCTTGCATCTTGGCTACCA 60.034 55.000 0.00 0.00 34.04 3.25
4139 4460 1.387295 GCCCTTGCATCTTGGCTACC 61.387 60.000 8.55 0.00 40.77 3.18
4140 4461 2.110296 GCCCTTGCATCTTGGCTAC 58.890 57.895 8.55 0.00 40.77 3.58
4141 4462 4.664062 GCCCTTGCATCTTGGCTA 57.336 55.556 8.55 0.00 40.77 3.93
4143 4464 1.252904 TGAAGCCCTTGCATCTTGGC 61.253 55.000 7.91 7.91 44.35 4.52
4144 4465 0.529378 GTGAAGCCCTTGCATCTTGG 59.471 55.000 0.00 0.00 41.13 3.61
4145 4466 0.529378 GGTGAAGCCCTTGCATCTTG 59.471 55.000 0.00 0.00 41.13 3.02
4146 4467 0.112995 TGGTGAAGCCCTTGCATCTT 59.887 50.000 0.00 0.00 41.13 2.40
4147 4468 0.333993 ATGGTGAAGCCCTTGCATCT 59.666 50.000 0.00 0.00 41.13 2.90
4148 4469 0.743097 GATGGTGAAGCCCTTGCATC 59.257 55.000 0.00 0.00 41.13 3.91
4149 4470 0.333993 AGATGGTGAAGCCCTTGCAT 59.666 50.000 0.00 0.00 41.13 3.96
4150 4471 0.991146 TAGATGGTGAAGCCCTTGCA 59.009 50.000 0.00 0.00 41.13 4.08
4151 4472 1.952296 CATAGATGGTGAAGCCCTTGC 59.048 52.381 0.00 0.00 36.04 4.01
4152 4473 2.579873 CCATAGATGGTGAAGCCCTTG 58.420 52.381 0.00 0.00 43.05 3.61
4164 4485 3.046087 CAGCGGCGGCCATAGATG 61.046 66.667 20.71 8.07 41.24 2.90
4165 4486 2.996168 GAACAGCGGCGGCCATAGAT 62.996 60.000 20.71 0.00 41.24 1.98
4166 4487 3.733344 GAACAGCGGCGGCCATAGA 62.733 63.158 20.71 0.00 41.24 1.98
4167 4488 3.272334 GAACAGCGGCGGCCATAG 61.272 66.667 20.71 9.86 41.24 2.23
4168 4489 4.849310 GGAACAGCGGCGGCCATA 62.849 66.667 20.71 0.00 41.24 2.74
4174 4495 3.564027 GATTCCGGAACAGCGGCG 61.564 66.667 21.56 0.51 0.00 6.46
4175 4496 0.461339 TAAGATTCCGGAACAGCGGC 60.461 55.000 21.56 5.02 0.00 6.53
4176 4497 1.134788 ACTAAGATTCCGGAACAGCGG 60.135 52.381 21.56 12.42 0.00 5.52
4177 4498 2.159226 AGACTAAGATTCCGGAACAGCG 60.159 50.000 21.56 9.75 0.00 5.18
4178 4499 3.528597 AGACTAAGATTCCGGAACAGC 57.471 47.619 21.56 12.18 0.00 4.40
4179 4500 5.450688 CCACTAGACTAAGATTCCGGAACAG 60.451 48.000 21.56 16.09 0.00 3.16
4277 4647 5.254115 TCGATTCTACCTCTCAAACTCTCA 58.746 41.667 0.00 0.00 0.00 3.27
4299 4669 4.261489 CCACATGAAAATGCTCTAGCCATC 60.261 45.833 0.00 0.00 41.18 3.51
4344 4718 3.322211 TCATTCGCGGGAGTAGAAAAA 57.678 42.857 6.13 0.00 33.81 1.94
4358 4732 6.699575 ATTCCCTAAATCTTGGTTCATTCG 57.300 37.500 0.00 0.00 0.00 3.34
4391 4767 7.707104 ACAGAGGATAGAAAAACACAAGTTTG 58.293 34.615 0.00 0.00 46.79 2.93
4397 4773 9.166173 CATATGAACAGAGGATAGAAAAACACA 57.834 33.333 0.00 0.00 0.00 3.72
4407 4783 6.239600 GGGTAGCAACATATGAACAGAGGATA 60.240 42.308 10.38 0.00 0.00 2.59
4408 4784 5.455326 GGGTAGCAACATATGAACAGAGGAT 60.455 44.000 10.38 0.00 0.00 3.24
4418 4794 8.077991 CACAAATGAATAGGGTAGCAACATATG 58.922 37.037 0.00 0.00 0.00 1.78
4430 4806 4.460382 ACTCTGCAACACAAATGAATAGGG 59.540 41.667 0.00 0.00 0.00 3.53
4479 4855 3.770263 ACTTGCCATGTTGATTCATCG 57.230 42.857 0.00 0.00 0.00 3.84
4486 4862 6.707440 TTCTTTCTAAACTTGCCATGTTGA 57.293 33.333 0.00 0.00 0.00 3.18
4501 4877 6.093404 CGTGTGATTGTCTAGCTTCTTTCTA 58.907 40.000 0.00 0.00 0.00 2.10
4577 4953 4.010667 AGGCTTGTGTTTTGGTACGATA 57.989 40.909 0.00 0.00 0.00 2.92
4581 4957 3.243401 CCTGAAGGCTTGTGTTTTGGTAC 60.243 47.826 3.46 0.00 0.00 3.34
4603 4979 4.637534 TCATGCTATGTCTTTTCTGCCTTC 59.362 41.667 0.00 0.00 0.00 3.46
4605 4981 3.944015 GTCATGCTATGTCTTTTCTGCCT 59.056 43.478 0.00 0.00 0.00 4.75
4607 4983 5.122869 TCAAGTCATGCTATGTCTTTTCTGC 59.877 40.000 6.11 0.00 36.70 4.26
4608 4984 6.732531 TCAAGTCATGCTATGTCTTTTCTG 57.267 37.500 6.11 0.00 36.70 3.02
4610 4986 7.362662 TGTTTCAAGTCATGCTATGTCTTTTC 58.637 34.615 6.11 1.39 36.70 2.29
4612 4988 6.882610 TGTTTCAAGTCATGCTATGTCTTT 57.117 33.333 6.11 0.00 36.70 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.