Multiple sequence alignment - TraesCS6D01G354600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G354600 chr6D 100.000 3483 0 0 1 3483 449970607 449974089 0.000000e+00 6433.0
1 TraesCS6D01G354600 chr6D 87.550 2008 210 21 801 2790 449921937 449923922 0.000000e+00 2287.0
2 TraesCS6D01G354600 chr6D 83.967 1553 201 23 1019 2557 449993960 449995478 0.000000e+00 1445.0
3 TraesCS6D01G354600 chr6D 87.500 240 18 4 2954 3192 449923924 449924152 2.060000e-67 267.0
4 TraesCS6D01G354600 chr6D 92.920 113 6 2 2681 2793 449920781 449920891 2.780000e-36 163.0
5 TraesCS6D01G354600 chr6D 87.179 78 6 1 808 885 449993825 449993898 6.190000e-13 86.1
6 TraesCS6D01G354600 chr6B 93.064 1932 113 10 873 2793 682135928 682137849 0.000000e+00 2806.0
7 TraesCS6D01G354600 chr6B 92.576 1118 68 4 1029 2132 682312820 682311704 0.000000e+00 1591.0
8 TraesCS6D01G354600 chr6B 92.777 623 44 1 2021 2643 682310350 682309729 0.000000e+00 900.0
9 TraesCS6D01G354600 chr6B 92.786 402 22 3 2954 3349 682137848 682138248 3.010000e-160 575.0
10 TraesCS6D01G354600 chr6B 83.650 263 30 5 2959 3219 682121518 682121769 5.810000e-58 235.0
11 TraesCS6D01G354600 chr6B 82.292 288 35 7 2959 3240 682316587 682316310 5.810000e-58 235.0
12 TraesCS6D01G354600 chr6B 94.928 138 4 2 3348 3483 682191206 682191342 2.720000e-51 213.0
13 TraesCS6D01G354600 chr6B 89.130 138 12 2 873 1010 682313444 682313310 5.980000e-38 169.0
14 TraesCS6D01G354600 chr6B 93.860 114 4 3 2680 2793 682316696 682316586 5.980000e-38 169.0
15 TraesCS6D01G354600 chr6B 92.982 114 6 2 2680 2793 682121408 682121519 7.730000e-37 165.0
16 TraesCS6D01G354600 chr6A 94.358 1666 72 6 873 2528 595498000 595499653 0.000000e+00 2536.0
17 TraesCS6D01G354600 chr6A 91.481 270 16 6 2520 2788 595501969 595502232 7.100000e-97 364.0
18 TraesCS6D01G354600 chr1D 92.473 651 20 4 109 756 492890116 492889492 0.000000e+00 904.0
19 TraesCS6D01G354600 chr1D 92.857 112 6 2 2681 2792 460357381 460357490 1.000000e-35 161.0
20 TraesCS6D01G354600 chr1D 85.000 80 3 4 18 97 492890246 492890176 4.820000e-09 73.1
21 TraesCS6D01G354600 chr7D 95.533 403 15 1 363 762 391262848 391262446 2.930000e-180 641.0
22 TraesCS6D01G354600 chr7D 96.825 189 6 0 184 372 391272864 391272676 2.020000e-82 316.0
23 TraesCS6D01G354600 chr7D 92.857 112 6 2 2681 2792 31392100 31392209 1.000000e-35 161.0
24 TraesCS6D01G354600 chr7D 92.857 112 6 2 2681 2792 549499518 549499627 1.000000e-35 161.0
25 TraesCS6D01G354600 chr2B 91.322 242 19 1 3244 3483 493975628 493975387 2.590000e-86 329.0
26 TraesCS6D01G354600 chr2B 88.136 236 24 3 3243 3475 403296126 403296360 9.520000e-71 278.0
27 TraesCS6D01G354600 chr2A 88.800 250 24 3 3238 3483 754471042 754470793 1.570000e-78 303.0
28 TraesCS6D01G354600 chr2A 84.426 244 34 3 3244 3483 67485436 67485193 1.620000e-58 237.0
29 TraesCS6D01G354600 chr2A 91.463 164 12 1 2792 2955 419206816 419206977 1.260000e-54 224.0
30 TraesCS6D01G354600 chr2A 90.244 164 14 2 2792 2955 342647560 342647399 2.720000e-51 213.0
31 TraesCS6D01G354600 chr2A 89.759 166 14 3 2791 2955 703708426 703708263 3.520000e-50 209.0
32 TraesCS6D01G354600 chr5A 86.777 242 25 6 3238 3475 442787525 442787287 2.670000e-66 263.0
33 TraesCS6D01G354600 chr5B 90.230 174 12 3 2792 2964 407219393 407219562 4.520000e-54 222.0
34 TraesCS6D01G354600 chr7A 89.773 176 13 4 2792 2966 451519811 451519982 1.630000e-53 220.0
35 TraesCS6D01G354600 chr4A 89.634 164 15 1 2792 2955 614112477 614112316 1.270000e-49 207.0
36 TraesCS6D01G354600 chr3A 89.634 164 15 1 2792 2955 238686210 238686371 1.270000e-49 207.0
37 TraesCS6D01G354600 chr3B 89.634 164 14 2 2792 2955 269252150 269251990 4.560000e-49 206.0
38 TraesCS6D01G354600 chr2D 89.222 167 15 1 2791 2957 373883596 373883433 4.560000e-49 206.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G354600 chr6D 449970607 449974089 3482 False 6433.000000 6433 100.000000 1 3483 1 chr6D.!!$F1 3482
1 TraesCS6D01G354600 chr6D 449920781 449924152 3371 False 905.666667 2287 89.323333 801 3192 3 chr6D.!!$F2 2391
2 TraesCS6D01G354600 chr6D 449993825 449995478 1653 False 765.550000 1445 85.573000 808 2557 2 chr6D.!!$F3 1749
3 TraesCS6D01G354600 chr6B 682135928 682138248 2320 False 1690.500000 2806 92.925000 873 3349 2 chr6B.!!$F3 2476
4 TraesCS6D01G354600 chr6B 682309729 682316696 6967 True 612.800000 1591 90.127000 873 3240 5 chr6B.!!$R1 2367
5 TraesCS6D01G354600 chr6A 595498000 595502232 4232 False 1450.000000 2536 92.919500 873 2788 2 chr6A.!!$F1 1915
6 TraesCS6D01G354600 chr1D 492889492 492890246 754 True 488.550000 904 88.736500 18 756 2 chr1D.!!$R1 738

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
431 480 0.036732 TCTTCGCTTTGGGATGCACT 59.963 50.0 0.0 0.0 0.00 4.40 F
563 615 0.523072 CTGTTTTCACATGGCGAGGG 59.477 55.0 0.0 0.0 30.39 4.30 F
1410 4268 0.541063 TGTTCGACCCTAGCCACTCA 60.541 55.0 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2309 6647 1.136961 TGGTGATGGTGTTGGCCCTA 61.137 55.0 0.00 0.0 0.00 3.53 R
2433 6771 0.383949 GATGGTGCACAACGGTGTTT 59.616 50.0 20.43 0.0 46.95 2.83 R
3385 10060 0.185901 AGGCCAACACCTTGACACAT 59.814 50.0 5.01 0.0 36.28 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 48 2.260247 TGCAAATGAGGCTGCAGTC 58.740 52.632 11.28 11.28 43.44 3.51
58 59 1.661341 GCTGCAGTCTTAGGTCATGG 58.339 55.000 16.64 0.00 0.00 3.66
59 60 1.745141 GCTGCAGTCTTAGGTCATGGG 60.745 57.143 16.64 0.00 0.00 4.00
63 64 3.209410 GCAGTCTTAGGTCATGGGAATG 58.791 50.000 0.00 0.00 0.00 2.67
64 65 3.813443 CAGTCTTAGGTCATGGGAATGG 58.187 50.000 0.00 0.00 0.00 3.16
66 67 3.200825 AGTCTTAGGTCATGGGAATGGTG 59.799 47.826 0.00 0.00 0.00 4.17
69 70 2.220653 AGGTCATGGGAATGGTGTTG 57.779 50.000 0.00 0.00 0.00 3.33
72 73 2.513753 GTCATGGGAATGGTGTTGTGA 58.486 47.619 0.00 0.00 0.00 3.58
73 74 3.091545 GTCATGGGAATGGTGTTGTGAT 58.908 45.455 0.00 0.00 0.00 3.06
98 99 2.751259 AGCTGTTGCATGTTGGTATCTG 59.249 45.455 0.00 0.00 42.74 2.90
103 104 4.229096 GTTGCATGTTGGTATCTGTGTTG 58.771 43.478 0.00 0.00 0.00 3.33
104 105 2.819019 TGCATGTTGGTATCTGTGTTGG 59.181 45.455 0.00 0.00 0.00 3.77
125 174 1.918957 CCTGGTGGGAGAGGAGAAAAT 59.081 52.381 0.00 0.00 37.23 1.82
260 309 1.280457 GTCCAGACCACCTTCAGGAT 58.720 55.000 0.00 0.00 34.03 3.24
280 329 6.370994 CAGGATATATCAAGCTGAATGTGGAC 59.629 42.308 14.60 0.00 0.00 4.02
289 338 2.540515 CTGAATGTGGACGCTTCGTAT 58.459 47.619 0.00 0.00 41.37 3.06
343 392 0.824109 TCCTGCGTGATAGTTCTGGG 59.176 55.000 0.00 0.00 0.00 4.45
356 405 2.695147 AGTTCTGGGAAGTTTTTGGCAG 59.305 45.455 0.00 0.00 0.00 4.85
376 425 1.943340 GCAGGTAATAACAGAGCTGGC 59.057 52.381 0.00 0.00 40.69 4.85
428 477 1.431036 GCTCTTCGCTTTGGGATGC 59.569 57.895 0.00 0.00 35.14 3.91
431 480 0.036732 TCTTCGCTTTGGGATGCACT 59.963 50.000 0.00 0.00 0.00 4.40
518 570 6.375455 AGCAAAAGATGGTGGTATTACTTCAG 59.625 38.462 0.00 0.00 38.62 3.02
525 577 4.179298 GGTGGTATTACTTCAGGTTCGTC 58.821 47.826 0.00 0.00 0.00 4.20
527 579 4.863131 GTGGTATTACTTCAGGTTCGTCAG 59.137 45.833 0.00 0.00 0.00 3.51
528 580 3.864003 GGTATTACTTCAGGTTCGTCAGC 59.136 47.826 0.00 0.00 0.00 4.26
561 613 1.136252 CGACTGTTTTCACATGGCGAG 60.136 52.381 0.00 0.00 35.67 5.03
562 614 1.197721 GACTGTTTTCACATGGCGAGG 59.802 52.381 0.00 0.00 30.39 4.63
563 615 0.523072 CTGTTTTCACATGGCGAGGG 59.477 55.000 0.00 0.00 30.39 4.30
565 617 1.271871 TGTTTTCACATGGCGAGGGAT 60.272 47.619 0.00 0.00 0.00 3.85
566 618 1.818674 GTTTTCACATGGCGAGGGATT 59.181 47.619 0.00 0.00 0.00 3.01
569 621 3.358111 TTCACATGGCGAGGGATTTTA 57.642 42.857 0.00 0.00 0.00 1.52
570 622 2.639065 TCACATGGCGAGGGATTTTAC 58.361 47.619 0.00 0.00 0.00 2.01
573 625 2.238646 ACATGGCGAGGGATTTTACTCA 59.761 45.455 0.00 0.00 33.36 3.41
575 627 2.917933 TGGCGAGGGATTTTACTCATG 58.082 47.619 0.00 0.00 33.36 3.07
576 628 2.238646 TGGCGAGGGATTTTACTCATGT 59.761 45.455 0.00 0.00 33.36 3.21
577 629 3.279434 GGCGAGGGATTTTACTCATGTT 58.721 45.455 0.00 0.00 33.36 2.71
748 800 9.574516 AACTAATAAAGGGGTGATGATATGTTC 57.425 33.333 0.00 0.00 0.00 3.18
781 833 8.960591 ACTATTGGACAAAATTGTATCTTGAGG 58.039 33.333 0.00 0.00 42.43 3.86
783 835 7.595819 TTGGACAAAATTGTATCTTGAGGTT 57.404 32.000 0.00 0.00 42.43 3.50
784 836 7.214467 TGGACAAAATTGTATCTTGAGGTTC 57.786 36.000 0.00 0.00 42.43 3.62
786 838 7.505585 TGGACAAAATTGTATCTTGAGGTTCTT 59.494 33.333 0.00 0.00 42.43 2.52
787 839 7.809806 GGACAAAATTGTATCTTGAGGTTCTTG 59.190 37.037 0.00 0.00 42.43 3.02
790 842 9.831737 CAAAATTGTATCTTGAGGTTCTTGTAG 57.168 33.333 0.00 0.00 0.00 2.74
793 845 9.606631 AATTGTATCTTGAGGTTCTTGTAGATC 57.393 33.333 0.00 0.00 0.00 2.75
795 847 9.475620 TTGTATCTTGAGGTTCTTGTAGATCTA 57.524 33.333 0.00 0.00 0.00 1.98
796 848 9.475620 TGTATCTTGAGGTTCTTGTAGATCTAA 57.524 33.333 3.40 0.00 0.00 2.10
801 853 7.849804 TGAGGTTCTTGTAGATCTAAAATGC 57.150 36.000 5.80 0.41 0.00 3.56
804 856 7.168219 AGGTTCTTGTAGATCTAAAATGCACA 58.832 34.615 5.80 0.00 0.00 4.57
829 1186 1.620323 CATCTCCTGCATCGGATACCA 59.380 52.381 0.00 0.00 31.43 3.25
840 1197 4.997395 GCATCGGATACCATGAGTGTTAAT 59.003 41.667 0.00 0.00 0.00 1.40
842 1199 6.649141 GCATCGGATACCATGAGTGTTAATTA 59.351 38.462 0.00 0.00 0.00 1.40
910 3291 6.469410 CCCCGGCTATGTACTCATTAATTTA 58.531 40.000 0.00 0.00 35.70 1.40
914 3295 9.214957 CCGGCTATGTACTCATTAATTTATGAA 57.785 33.333 8.38 0.00 34.32 2.57
960 3341 1.729586 TGTATCCCCTGCAGATACCC 58.270 55.000 17.39 0.00 43.58 3.69
1098 3953 3.047877 GTTGCCGGCGTGCTAGTT 61.048 61.111 23.90 0.00 0.00 2.24
1233 4088 2.526873 AGCTTCCACCACCGTCCT 60.527 61.111 0.00 0.00 0.00 3.85
1410 4268 0.541063 TGTTCGACCCTAGCCACTCA 60.541 55.000 0.00 0.00 0.00 3.41
1491 4349 2.358003 GCTGGCGACAAGTGCTCT 60.358 61.111 0.00 0.00 42.06 4.09
1542 4401 2.230940 CGGCGTCGACACCATCATC 61.231 63.158 21.81 0.00 39.00 2.92
2082 6420 1.966451 CACCTGTGTTTCCGGGAGC 60.966 63.158 0.00 0.00 0.00 4.70
2309 6647 2.073816 ACGCGATTCATTTTCGACCTT 58.926 42.857 15.93 0.00 38.88 3.50
2358 6696 3.050275 GCTGTGAAGCCGACACCC 61.050 66.667 0.00 0.00 37.45 4.61
2433 6771 7.543756 TCGTTGATCATTAGTCACTCATGTTA 58.456 34.615 0.00 0.00 0.00 2.41
2436 6774 9.760660 GTTGATCATTAGTCACTCATGTTAAAC 57.239 33.333 0.00 0.00 0.00 2.01
2459 6797 2.159393 CCGTTGTGCACCATCCTTAATG 60.159 50.000 15.69 5.26 34.93 1.90
2477 6815 6.096705 CCTTAATGGAGTGGCATGTCAAAATA 59.903 38.462 0.00 0.00 38.35 1.40
2547 9211 7.663043 AGTTTAGTAGGAGATTCAACCTAGG 57.337 40.000 7.41 7.41 39.10 3.02
2598 9265 7.434492 ACCACATCATTAGTTAGTTAGGATCG 58.566 38.462 0.00 0.00 0.00 3.69
2612 9279 1.940613 AGGATCGGAAAATAACGCTGC 59.059 47.619 0.00 0.00 0.00 5.25
2729 9397 2.441750 TGGACCTTTCAAAGCCAGTAGT 59.558 45.455 0.00 0.00 0.00 2.73
2758 9426 8.486210 GGGTTCATATATCATTATCTGGCACTA 58.514 37.037 0.00 0.00 0.00 2.74
2793 9461 6.875726 ACGGATTTCTGTAACTTAAACCCTAC 59.124 38.462 0.00 0.00 32.82 3.18
2794 9462 7.101700 CGGATTTCTGTAACTTAAACCCTACT 58.898 38.462 0.00 0.00 0.00 2.57
2795 9463 7.277319 CGGATTTCTGTAACTTAAACCCTACTC 59.723 40.741 0.00 0.00 0.00 2.59
2796 9464 7.551974 GGATTTCTGTAACTTAAACCCTACTCC 59.448 40.741 0.00 0.00 0.00 3.85
2797 9465 6.364568 TTCTGTAACTTAAACCCTACTCCC 57.635 41.667 0.00 0.00 0.00 4.30
2798 9466 5.658474 TCTGTAACTTAAACCCTACTCCCT 58.342 41.667 0.00 0.00 0.00 4.20
2799 9467 6.086775 TCTGTAACTTAAACCCTACTCCCTT 58.913 40.000 0.00 0.00 0.00 3.95
2800 9468 6.559921 TCTGTAACTTAAACCCTACTCCCTTT 59.440 38.462 0.00 0.00 0.00 3.11
2801 9469 6.536447 TGTAACTTAAACCCTACTCCCTTTG 58.464 40.000 0.00 0.00 0.00 2.77
2802 9470 5.658198 AACTTAAACCCTACTCCCTTTGT 57.342 39.130 0.00 0.00 0.00 2.83
2803 9471 5.658198 ACTTAAACCCTACTCCCTTTGTT 57.342 39.130 0.00 0.00 0.00 2.83
2804 9472 5.628130 ACTTAAACCCTACTCCCTTTGTTC 58.372 41.667 0.00 0.00 0.00 3.18
2805 9473 3.520691 AAACCCTACTCCCTTTGTTCC 57.479 47.619 0.00 0.00 0.00 3.62
2806 9474 2.435203 ACCCTACTCCCTTTGTTCCT 57.565 50.000 0.00 0.00 0.00 3.36
2807 9475 3.572661 ACCCTACTCCCTTTGTTCCTA 57.427 47.619 0.00 0.00 0.00 2.94
2808 9476 3.878086 ACCCTACTCCCTTTGTTCCTAA 58.122 45.455 0.00 0.00 0.00 2.69
2809 9477 4.245308 ACCCTACTCCCTTTGTTCCTAAA 58.755 43.478 0.00 0.00 0.00 1.85
2810 9478 4.856182 ACCCTACTCCCTTTGTTCCTAAAT 59.144 41.667 0.00 0.00 0.00 1.40
2811 9479 6.034003 ACCCTACTCCCTTTGTTCCTAAATA 58.966 40.000 0.00 0.00 0.00 1.40
2812 9480 6.681541 ACCCTACTCCCTTTGTTCCTAAATAT 59.318 38.462 0.00 0.00 0.00 1.28
2813 9481 7.853003 ACCCTACTCCCTTTGTTCCTAAATATA 59.147 37.037 0.00 0.00 0.00 0.86
2814 9482 8.720537 CCCTACTCCCTTTGTTCCTAAATATAA 58.279 37.037 0.00 0.00 0.00 0.98
2815 9483 9.780186 CCTACTCCCTTTGTTCCTAAATATAAG 57.220 37.037 0.00 0.00 0.00 1.73
2818 9486 9.059023 ACTCCCTTTGTTCCTAAATATAAGTCT 57.941 33.333 0.00 0.00 0.00 3.24
2819 9487 9.907229 CTCCCTTTGTTCCTAAATATAAGTCTT 57.093 33.333 0.00 0.00 0.00 3.01
2846 9514 6.869315 TTTTAGATTTCAATGTGGACGACA 57.131 33.333 0.00 0.00 39.53 4.35
2848 9516 8.554835 TTTTAGATTTCAATGTGGACGACATA 57.445 30.769 3.30 0.00 45.12 2.29
2849 9517 7.534085 TTAGATTTCAATGTGGACGACATAC 57.466 36.000 3.30 0.00 45.12 2.39
2850 9518 4.566759 AGATTTCAATGTGGACGACATACG 59.433 41.667 3.30 0.00 45.12 3.06
2851 9519 2.287393 TCAATGTGGACGACATACGG 57.713 50.000 3.30 0.00 45.12 4.02
2852 9520 1.819903 TCAATGTGGACGACATACGGA 59.180 47.619 3.30 0.31 45.12 4.69
2853 9521 2.429250 TCAATGTGGACGACATACGGAT 59.571 45.455 3.30 0.00 45.12 4.18
2854 9522 2.509052 ATGTGGACGACATACGGATG 57.491 50.000 5.94 5.94 43.96 3.51
2856 9524 2.367486 TGTGGACGACATACGGATGTA 58.633 47.619 14.70 0.00 46.64 2.29
2857 9525 2.953648 TGTGGACGACATACGGATGTAT 59.046 45.455 14.70 4.79 46.64 2.29
2858 9526 4.136051 TGTGGACGACATACGGATGTATA 58.864 43.478 14.70 0.00 46.64 1.47
2859 9527 4.763279 TGTGGACGACATACGGATGTATAT 59.237 41.667 14.70 1.44 46.64 0.86
2860 9528 5.939296 TGTGGACGACATACGGATGTATATA 59.061 40.000 14.70 0.00 46.64 0.86
2861 9529 6.093082 TGTGGACGACATACGGATGTATATAG 59.907 42.308 14.70 5.74 46.64 1.31
2862 9530 6.314648 GTGGACGACATACGGATGTATATAGA 59.685 42.308 14.70 0.00 46.64 1.98
2863 9531 6.314648 TGGACGACATACGGATGTATATAGAC 59.685 42.308 14.70 0.00 46.64 2.59
2864 9532 6.538021 GGACGACATACGGATGTATATAGACT 59.462 42.308 14.70 0.00 46.64 3.24
2865 9533 7.065563 GGACGACATACGGATGTATATAGACTT 59.934 40.741 14.70 0.00 46.64 3.01
2866 9534 7.749808 ACGACATACGGATGTATATAGACTTG 58.250 38.462 14.70 0.00 46.64 3.16
2867 9535 7.389884 ACGACATACGGATGTATATAGACTTGT 59.610 37.037 14.70 0.00 46.64 3.16
2868 9536 8.235226 CGACATACGGATGTATATAGACTTGTT 58.765 37.037 14.70 0.00 46.64 2.83
2869 9537 9.909644 GACATACGGATGTATATAGACTTGTTT 57.090 33.333 14.70 0.00 46.64 2.83
2897 9565 7.617041 AGTGTAGATTTACTCATTTTGCTCC 57.383 36.000 0.00 0.00 0.00 4.70
2898 9566 6.313905 AGTGTAGATTTACTCATTTTGCTCCG 59.686 38.462 0.00 0.00 0.00 4.63
2899 9567 6.092259 GTGTAGATTTACTCATTTTGCTCCGT 59.908 38.462 0.00 0.00 0.00 4.69
2900 9568 7.277098 GTGTAGATTTACTCATTTTGCTCCGTA 59.723 37.037 0.00 0.00 0.00 4.02
2901 9569 7.985184 TGTAGATTTACTCATTTTGCTCCGTAT 59.015 33.333 0.00 0.00 0.00 3.06
2902 9570 7.251704 AGATTTACTCATTTTGCTCCGTATG 57.748 36.000 0.00 0.00 0.00 2.39
2903 9571 6.823689 AGATTTACTCATTTTGCTCCGTATGT 59.176 34.615 0.00 0.00 0.00 2.29
2904 9572 7.985184 AGATTTACTCATTTTGCTCCGTATGTA 59.015 33.333 0.00 0.00 0.00 2.29
2905 9573 7.534085 TTTACTCATTTTGCTCCGTATGTAG 57.466 36.000 0.00 0.00 0.00 2.74
2906 9574 5.086104 ACTCATTTTGCTCCGTATGTAGT 57.914 39.130 0.00 0.00 0.00 2.73
2907 9575 5.488341 ACTCATTTTGCTCCGTATGTAGTT 58.512 37.500 0.00 0.00 0.00 2.24
2908 9576 5.581085 ACTCATTTTGCTCCGTATGTAGTTC 59.419 40.000 0.00 0.00 0.00 3.01
2909 9577 5.483811 TCATTTTGCTCCGTATGTAGTTCA 58.516 37.500 0.00 0.00 0.00 3.18
2910 9578 6.112734 TCATTTTGCTCCGTATGTAGTTCAT 58.887 36.000 0.00 0.00 40.25 2.57
2911 9579 7.269316 TCATTTTGCTCCGTATGTAGTTCATA 58.731 34.615 0.00 0.00 37.91 2.15
2912 9580 7.931407 TCATTTTGCTCCGTATGTAGTTCATAT 59.069 33.333 0.00 0.00 40.54 1.78
2913 9581 8.559536 CATTTTGCTCCGTATGTAGTTCATATT 58.440 33.333 0.00 0.00 40.54 1.28
2914 9582 7.477144 TTTGCTCCGTATGTAGTTCATATTG 57.523 36.000 0.00 0.00 40.54 1.90
2915 9583 5.538118 TGCTCCGTATGTAGTTCATATTGG 58.462 41.667 5.26 5.26 40.54 3.16
2916 9584 5.303333 TGCTCCGTATGTAGTTCATATTGGA 59.697 40.000 10.96 10.96 40.63 3.53
2917 9585 6.183360 TGCTCCGTATGTAGTTCATATTGGAA 60.183 38.462 11.96 1.11 41.44 3.53
2918 9586 6.874134 GCTCCGTATGTAGTTCATATTGGAAT 59.126 38.462 11.96 0.00 41.44 3.01
2919 9587 7.063544 GCTCCGTATGTAGTTCATATTGGAATC 59.936 40.741 11.96 6.35 41.44 2.52
2920 9588 8.190326 TCCGTATGTAGTTCATATTGGAATCT 57.810 34.615 9.72 0.00 40.31 2.40
2921 9589 8.647796 TCCGTATGTAGTTCATATTGGAATCTT 58.352 33.333 9.72 0.00 40.31 2.40
2922 9590 9.273016 CCGTATGTAGTTCATATTGGAATCTTT 57.727 33.333 5.56 0.00 40.54 2.52
2950 9618 9.907229 AAAAGACTTATATTTAGGAACAGAGGG 57.093 33.333 0.00 0.00 0.00 4.30
2951 9619 8.855804 AAGACTTATATTTAGGAACAGAGGGA 57.144 34.615 0.00 0.00 0.00 4.20
2952 9620 8.485578 AGACTTATATTTAGGAACAGAGGGAG 57.514 38.462 0.00 0.00 0.00 4.30
2953 9621 8.068733 AGACTTATATTTAGGAACAGAGGGAGT 58.931 37.037 0.00 0.00 0.00 3.85
2954 9622 9.364653 GACTTATATTTAGGAACAGAGGGAGTA 57.635 37.037 0.00 0.00 0.00 2.59
3035 9704 8.360390 TCACACTACCATCTGATGACATAATAC 58.640 37.037 18.92 0.00 0.00 1.89
3036 9705 8.143835 CACACTACCATCTGATGACATAATACA 58.856 37.037 18.92 0.00 0.00 2.29
3200 9871 9.419297 GATACTAAGTTGATGTGTCAAGTGTAA 57.581 33.333 0.00 0.00 45.08 2.41
3206 9877 3.993736 TGATGTGTCAAGTGTAATGGACG 59.006 43.478 0.00 0.00 33.04 4.79
3299 9974 4.156008 GCTGGTTCGAAAATGTTACATCCT 59.844 41.667 0.00 0.00 0.00 3.24
3308 9983 9.226606 TCGAAAATGTTACATCCTTTAAGACAT 57.773 29.630 0.00 0.00 0.00 3.06
3325 10000 8.608844 TTAAGACATGAGGAAGAAGAAAACTC 57.391 34.615 0.00 0.00 0.00 3.01
3329 10004 3.991367 TGAGGAAGAAGAAAACTCGGTC 58.009 45.455 0.00 0.00 0.00 4.79
3335 10010 4.457834 AGAAGAAAACTCGGTCGATCAT 57.542 40.909 0.00 0.00 0.00 2.45
3341 10016 0.962489 ACTCGGTCGATCATCATCCC 59.038 55.000 0.00 0.00 0.00 3.85
3349 10024 2.628178 TCGATCATCATCCCACCAGTAC 59.372 50.000 0.00 0.00 0.00 2.73
3350 10025 2.365293 CGATCATCATCCCACCAGTACA 59.635 50.000 0.00 0.00 0.00 2.90
3351 10026 3.007290 CGATCATCATCCCACCAGTACAT 59.993 47.826 0.00 0.00 0.00 2.29
3352 10027 4.573900 GATCATCATCCCACCAGTACATC 58.426 47.826 0.00 0.00 0.00 3.06
3353 10028 3.383223 TCATCATCCCACCAGTACATCA 58.617 45.455 0.00 0.00 0.00 3.07
3354 10029 3.779738 TCATCATCCCACCAGTACATCAA 59.220 43.478 0.00 0.00 0.00 2.57
3355 10030 3.912496 TCATCCCACCAGTACATCAAG 57.088 47.619 0.00 0.00 0.00 3.02
3356 10031 3.181329 TCATCCCACCAGTACATCAAGT 58.819 45.455 0.00 0.00 0.00 3.16
3357 10032 3.587061 TCATCCCACCAGTACATCAAGTT 59.413 43.478 0.00 0.00 0.00 2.66
3358 10033 4.042809 TCATCCCACCAGTACATCAAGTTT 59.957 41.667 0.00 0.00 0.00 2.66
3359 10034 5.249622 TCATCCCACCAGTACATCAAGTTTA 59.750 40.000 0.00 0.00 0.00 2.01
3360 10035 4.901868 TCCCACCAGTACATCAAGTTTAC 58.098 43.478 0.00 0.00 0.00 2.01
3361 10036 4.348461 TCCCACCAGTACATCAAGTTTACA 59.652 41.667 0.00 0.00 0.00 2.41
3362 10037 5.013704 TCCCACCAGTACATCAAGTTTACAT 59.986 40.000 0.00 0.00 0.00 2.29
3363 10038 5.354234 CCCACCAGTACATCAAGTTTACATC 59.646 44.000 0.00 0.00 0.00 3.06
3364 10039 5.937540 CCACCAGTACATCAAGTTTACATCA 59.062 40.000 0.00 0.00 0.00 3.07
3365 10040 6.599244 CCACCAGTACATCAAGTTTACATCAT 59.401 38.462 0.00 0.00 0.00 2.45
3366 10041 7.768582 CCACCAGTACATCAAGTTTACATCATA 59.231 37.037 0.00 0.00 0.00 2.15
3367 10042 9.161629 CACCAGTACATCAAGTTTACATCATAA 57.838 33.333 0.00 0.00 0.00 1.90
3368 10043 9.733556 ACCAGTACATCAAGTTTACATCATAAA 57.266 29.630 0.00 0.00 0.00 1.40
3369 10044 9.988350 CCAGTACATCAAGTTTACATCATAAAC 57.012 33.333 0.00 2.05 37.60 2.01
3378 10053 9.708222 CAAGTTTACATCATAAACATGTCTAGC 57.292 33.333 0.00 0.00 39.24 3.42
3379 10054 9.448438 AAGTTTACATCATAAACATGTCTAGCA 57.552 29.630 0.00 0.00 39.24 3.49
3380 10055 9.448438 AGTTTACATCATAAACATGTCTAGCAA 57.552 29.630 0.00 0.00 39.24 3.91
3381 10056 9.708222 GTTTACATCATAAACATGTCTAGCAAG 57.292 33.333 0.00 0.00 37.37 4.01
3382 10057 6.932356 ACATCATAAACATGTCTAGCAAGG 57.068 37.500 0.00 0.00 27.49 3.61
3383 10058 6.653020 ACATCATAAACATGTCTAGCAAGGA 58.347 36.000 0.00 0.00 27.49 3.36
3384 10059 6.765036 ACATCATAAACATGTCTAGCAAGGAG 59.235 38.462 0.00 0.00 27.49 3.69
3385 10060 6.544928 TCATAAACATGTCTAGCAAGGAGA 57.455 37.500 0.00 0.00 0.00 3.71
3386 10061 7.129457 TCATAAACATGTCTAGCAAGGAGAT 57.871 36.000 0.00 0.00 0.00 2.75
3387 10062 6.988580 TCATAAACATGTCTAGCAAGGAGATG 59.011 38.462 0.00 8.41 39.41 2.90
3388 10063 4.833478 AACATGTCTAGCAAGGAGATGT 57.167 40.909 0.00 9.38 45.37 3.06
3389 10064 4.134379 ACATGTCTAGCAAGGAGATGTG 57.866 45.455 12.79 4.38 43.05 3.21
3390 10065 3.517100 ACATGTCTAGCAAGGAGATGTGT 59.483 43.478 12.79 4.83 43.05 3.72
3391 10066 3.876274 TGTCTAGCAAGGAGATGTGTC 57.124 47.619 0.00 0.00 0.00 3.67
3392 10067 3.165071 TGTCTAGCAAGGAGATGTGTCA 58.835 45.455 0.00 0.00 0.00 3.58
3393 10068 3.578282 TGTCTAGCAAGGAGATGTGTCAA 59.422 43.478 0.00 0.00 0.00 3.18
3394 10069 4.180057 GTCTAGCAAGGAGATGTGTCAAG 58.820 47.826 0.00 0.00 0.00 3.02
3395 10070 2.486472 AGCAAGGAGATGTGTCAAGG 57.514 50.000 0.00 0.00 0.00 3.61
3396 10071 1.701847 AGCAAGGAGATGTGTCAAGGT 59.298 47.619 0.00 0.00 0.00 3.50
3397 10072 1.808945 GCAAGGAGATGTGTCAAGGTG 59.191 52.381 0.00 0.00 0.00 4.00
3398 10073 2.811873 GCAAGGAGATGTGTCAAGGTGT 60.812 50.000 0.00 0.00 0.00 4.16
3399 10074 3.480470 CAAGGAGATGTGTCAAGGTGTT 58.520 45.455 0.00 0.00 0.00 3.32
3400 10075 3.131709 AGGAGATGTGTCAAGGTGTTG 57.868 47.619 0.00 0.00 34.67 3.33
3401 10076 2.154462 GGAGATGTGTCAAGGTGTTGG 58.846 52.381 0.00 0.00 34.09 3.77
3402 10077 1.537202 GAGATGTGTCAAGGTGTTGGC 59.463 52.381 0.00 0.00 38.89 4.52
3403 10078 0.598065 GATGTGTCAAGGTGTTGGCC 59.402 55.000 0.00 0.00 37.49 5.36
3404 10079 0.185901 ATGTGTCAAGGTGTTGGCCT 59.814 50.000 3.32 0.00 37.49 5.19
3405 10080 0.465460 TGTGTCAAGGTGTTGGCCTC 60.465 55.000 3.32 0.00 37.49 4.70
3406 10081 1.150536 TGTCAAGGTGTTGGCCTCC 59.849 57.895 3.32 1.20 37.49 4.30
3407 10082 1.603739 GTCAAGGTGTTGGCCTCCC 60.604 63.158 3.32 0.00 38.03 4.30
3408 10083 2.672996 CAAGGTGTTGGCCTCCCG 60.673 66.667 3.32 0.00 38.03 5.14
3409 10084 2.852075 AAGGTGTTGGCCTCCCGA 60.852 61.111 3.32 0.00 38.03 5.14
3410 10085 2.895424 AAGGTGTTGGCCTCCCGAG 61.895 63.158 3.32 0.00 38.03 4.63
3412 10087 4.329545 GTGTTGGCCTCCCGAGCA 62.330 66.667 3.32 0.00 0.00 4.26
3413 10088 3.565214 TGTTGGCCTCCCGAGCAA 61.565 61.111 3.32 0.00 0.00 3.91
3414 10089 2.044946 GTTGGCCTCCCGAGCAAT 60.045 61.111 3.32 0.00 0.00 3.56
3415 10090 2.045045 TTGGCCTCCCGAGCAATG 60.045 61.111 3.32 0.00 0.00 2.82
3416 10091 4.802051 TGGCCTCCCGAGCAATGC 62.802 66.667 3.32 0.00 0.00 3.56
3417 10092 4.496336 GGCCTCCCGAGCAATGCT 62.496 66.667 7.79 7.79 43.88 3.79
3432 10107 6.964741 AGCAATGCTCGAATCTTATAGATG 57.035 37.500 0.00 0.00 31.33 2.90
3433 10108 5.873712 AGCAATGCTCGAATCTTATAGATGG 59.126 40.000 0.00 0.00 31.33 3.51
3434 10109 5.871524 GCAATGCTCGAATCTTATAGATGGA 59.128 40.000 0.00 0.00 34.65 3.41
3435 10110 6.369890 GCAATGCTCGAATCTTATAGATGGAA 59.630 38.462 0.00 0.00 34.65 3.53
3436 10111 7.065563 GCAATGCTCGAATCTTATAGATGGAAT 59.934 37.037 0.00 0.00 34.65 3.01
3437 10112 8.944029 CAATGCTCGAATCTTATAGATGGAATT 58.056 33.333 0.00 0.00 34.65 2.17
3438 10113 9.512588 AATGCTCGAATCTTATAGATGGAATTT 57.487 29.630 0.00 0.00 34.65 1.82
3439 10114 8.539770 TGCTCGAATCTTATAGATGGAATTTC 57.460 34.615 0.00 0.00 34.65 2.17
3440 10115 8.150296 TGCTCGAATCTTATAGATGGAATTTCA 58.850 33.333 0.00 0.00 34.65 2.69
3441 10116 9.160496 GCTCGAATCTTATAGATGGAATTTCAT 57.840 33.333 0.00 0.00 34.65 2.57
3443 10118 9.440773 TCGAATCTTATAGATGGAATTTCATGG 57.559 33.333 3.23 0.00 34.65 3.66
3444 10119 8.671921 CGAATCTTATAGATGGAATTTCATGGG 58.328 37.037 3.23 0.00 34.65 4.00
3445 10120 7.951347 ATCTTATAGATGGAATTTCATGGGC 57.049 36.000 3.23 0.00 32.80 5.36
3446 10121 6.248433 TCTTATAGATGGAATTTCATGGGCC 58.752 40.000 3.23 0.00 0.00 5.80
3447 10122 2.852714 AGATGGAATTTCATGGGCCA 57.147 45.000 9.61 9.61 0.00 5.36
3448 10123 3.119009 AGATGGAATTTCATGGGCCAA 57.881 42.857 11.89 0.00 31.53 4.52
3449 10124 3.452878 AGATGGAATTTCATGGGCCAAA 58.547 40.909 11.89 0.00 31.53 3.28
3450 10125 4.042174 AGATGGAATTTCATGGGCCAAAT 58.958 39.130 11.89 2.55 31.53 2.32
3451 10126 3.630892 TGGAATTTCATGGGCCAAATG 57.369 42.857 11.89 5.33 0.00 2.32
3452 10127 3.179685 TGGAATTTCATGGGCCAAATGA 58.820 40.909 11.89 14.64 32.24 2.57
3453 10128 3.586174 TGGAATTTCATGGGCCAAATGAA 59.414 39.130 22.66 22.66 41.19 2.57
3457 10132 4.428294 TTTCATGGGCCAAATGAAAACA 57.572 36.364 29.61 16.49 46.05 2.83
3458 10133 4.428294 TTCATGGGCCAAATGAAAACAA 57.572 36.364 23.71 7.50 40.25 2.83
3459 10134 4.637387 TCATGGGCCAAATGAAAACAAT 57.363 36.364 11.89 0.00 31.17 2.71
3460 10135 4.577875 TCATGGGCCAAATGAAAACAATC 58.422 39.130 11.89 0.00 31.17 2.67
3461 10136 3.415457 TGGGCCAAATGAAAACAATCC 57.585 42.857 2.13 0.00 0.00 3.01
3462 10137 2.289320 TGGGCCAAATGAAAACAATCCG 60.289 45.455 2.13 0.00 0.00 4.18
3463 10138 1.731709 GGCCAAATGAAAACAATCCGC 59.268 47.619 0.00 0.00 0.00 5.54
3464 10139 2.411904 GCCAAATGAAAACAATCCGCA 58.588 42.857 0.00 0.00 0.00 5.69
3465 10140 2.805099 GCCAAATGAAAACAATCCGCAA 59.195 40.909 0.00 0.00 0.00 4.85
3466 10141 3.120580 GCCAAATGAAAACAATCCGCAAG 60.121 43.478 0.00 0.00 0.00 4.01
3467 10142 4.057432 CCAAATGAAAACAATCCGCAAGT 58.943 39.130 0.00 0.00 0.00 3.16
3468 10143 5.226396 CCAAATGAAAACAATCCGCAAGTA 58.774 37.500 0.00 0.00 0.00 2.24
3469 10144 5.868801 CCAAATGAAAACAATCCGCAAGTAT 59.131 36.000 0.00 0.00 0.00 2.12
3470 10145 6.368516 CCAAATGAAAACAATCCGCAAGTATT 59.631 34.615 0.00 0.00 0.00 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.142447 TGACAGAAGGTATTCGAGTACTGC 60.142 45.833 16.48 7.43 40.58 4.40
1 2 5.124138 AGTGACAGAAGGTATTCGAGTACTG 59.876 44.000 16.48 9.98 40.58 2.74
3 4 5.448904 GGAGTGACAGAAGGTATTCGAGTAC 60.449 48.000 9.45 9.45 40.58 2.73
4 5 4.639310 GGAGTGACAGAAGGTATTCGAGTA 59.361 45.833 0.00 0.00 40.58 2.59
6 7 3.181485 GGGAGTGACAGAAGGTATTCGAG 60.181 52.174 0.00 0.00 40.58 4.04
7 8 2.758979 GGGAGTGACAGAAGGTATTCGA 59.241 50.000 0.00 0.00 40.58 3.71
9 10 3.680196 GCAGGGAGTGACAGAAGGTATTC 60.680 52.174 0.00 0.00 35.52 1.75
10 11 2.237392 GCAGGGAGTGACAGAAGGTATT 59.763 50.000 0.00 0.00 0.00 1.89
11 12 1.834263 GCAGGGAGTGACAGAAGGTAT 59.166 52.381 0.00 0.00 0.00 2.73
12 13 1.267121 GCAGGGAGTGACAGAAGGTA 58.733 55.000 0.00 0.00 0.00 3.08
14 15 0.397941 TTGCAGGGAGTGACAGAAGG 59.602 55.000 0.00 0.00 0.00 3.46
15 16 2.260844 TTTGCAGGGAGTGACAGAAG 57.739 50.000 0.00 0.00 0.00 2.85
16 17 2.106338 TCATTTGCAGGGAGTGACAGAA 59.894 45.455 0.00 0.00 0.00 3.02
47 48 3.652057 ACACCATTCCCATGACCTAAG 57.348 47.619 0.00 0.00 31.07 2.18
58 59 4.036027 CAGCTATGATCACAACACCATTCC 59.964 45.833 0.00 0.00 0.00 3.01
59 60 4.637534 ACAGCTATGATCACAACACCATTC 59.362 41.667 0.00 0.00 0.00 2.67
63 64 3.426695 GCAACAGCTATGATCACAACACC 60.427 47.826 0.00 0.00 0.00 4.16
64 65 3.189080 TGCAACAGCTATGATCACAACAC 59.811 43.478 0.00 0.00 0.00 3.32
66 67 4.142534 ACATGCAACAGCTATGATCACAAC 60.143 41.667 0.00 0.00 0.00 3.32
69 70 4.348656 CAACATGCAACAGCTATGATCAC 58.651 43.478 0.00 0.00 0.00 3.06
72 73 3.359033 ACCAACATGCAACAGCTATGAT 58.641 40.909 0.00 0.00 0.00 2.45
73 74 2.794103 ACCAACATGCAACAGCTATGA 58.206 42.857 0.00 0.00 0.00 2.15
98 99 2.282462 CTCCCACCAGGCCAACAC 60.282 66.667 5.01 0.00 34.51 3.32
103 104 3.086600 CTCCTCTCCCACCAGGCC 61.087 72.222 0.00 0.00 34.51 5.19
104 105 1.201429 TTTCTCCTCTCCCACCAGGC 61.201 60.000 0.00 0.00 34.51 4.85
125 174 0.834612 ACTGTTTCTCCGTGGACCAA 59.165 50.000 0.00 0.00 0.00 3.67
210 259 7.662604 TTCCTTTTTACTTTAGCCGAACTAG 57.337 36.000 0.00 0.00 30.79 2.57
260 309 4.058124 GCGTCCACATTCAGCTTGATATA 58.942 43.478 0.00 0.00 0.00 0.86
280 329 3.776742 CGAATCAACATCATACGAAGCG 58.223 45.455 0.00 0.00 0.00 4.68
289 338 2.027285 TCCCTGAAGCGAATCAACATCA 60.027 45.455 0.00 0.00 0.00 3.07
326 375 2.093973 ACTTCCCAGAACTATCACGCAG 60.094 50.000 0.00 0.00 0.00 5.18
343 392 3.726291 TTACCTGCTGCCAAAAACTTC 57.274 42.857 0.00 0.00 0.00 3.01
356 405 1.943340 GCCAGCTCTGTTATTACCTGC 59.057 52.381 0.00 0.00 0.00 4.85
376 425 2.610219 TGAAAACGTCCATGCAATCG 57.390 45.000 0.00 0.00 0.00 3.34
428 477 1.572085 CCGACAGAGCTTGCCAAGTG 61.572 60.000 6.28 0.00 0.00 3.16
431 480 0.674581 CATCCGACAGAGCTTGCCAA 60.675 55.000 0.00 0.00 0.00 4.52
463 512 3.443099 TCCATGCTATCAGAGTTGACG 57.557 47.619 0.00 0.00 35.83 4.35
518 570 2.159517 CCAAAATAGCAGCTGACGAACC 60.160 50.000 20.43 0.00 0.00 3.62
525 577 2.094894 CAGTCGTCCAAAATAGCAGCTG 59.905 50.000 10.11 10.11 0.00 4.24
527 579 2.076863 ACAGTCGTCCAAAATAGCAGC 58.923 47.619 0.00 0.00 0.00 5.25
528 580 4.749245 AAACAGTCGTCCAAAATAGCAG 57.251 40.909 0.00 0.00 0.00 4.24
531 583 6.055231 TGTGAAAACAGTCGTCCAAAATAG 57.945 37.500 0.00 0.00 0.00 1.73
561 613 5.182380 TCAAACCGAACATGAGTAAAATCCC 59.818 40.000 0.00 0.00 0.00 3.85
562 614 6.249035 TCAAACCGAACATGAGTAAAATCC 57.751 37.500 0.00 0.00 0.00 3.01
576 628 6.227522 TCTCTATGACAATGTTCAAACCGAA 58.772 36.000 0.00 0.00 0.00 4.30
577 629 5.789521 TCTCTATGACAATGTTCAAACCGA 58.210 37.500 0.00 0.00 0.00 4.69
755 807 8.960591 CCTCAAGATACAATTTTGTCCAATAGT 58.039 33.333 0.00 0.00 42.35 2.12
756 808 8.960591 ACCTCAAGATACAATTTTGTCCAATAG 58.039 33.333 0.00 0.00 42.35 1.73
758 810 7.781324 ACCTCAAGATACAATTTTGTCCAAT 57.219 32.000 0.00 0.00 42.35 3.16
759 811 7.505585 AGAACCTCAAGATACAATTTTGTCCAA 59.494 33.333 0.00 0.00 42.35 3.53
761 813 7.454260 AGAACCTCAAGATACAATTTTGTCC 57.546 36.000 0.00 0.00 42.35 4.02
762 814 8.352942 ACAAGAACCTCAAGATACAATTTTGTC 58.647 33.333 0.00 0.00 42.35 3.18
763 815 8.237811 ACAAGAACCTCAAGATACAATTTTGT 57.762 30.769 1.08 1.08 44.86 2.83
764 816 9.831737 CTACAAGAACCTCAAGATACAATTTTG 57.168 33.333 0.00 0.00 0.00 2.44
765 817 9.793259 TCTACAAGAACCTCAAGATACAATTTT 57.207 29.630 0.00 0.00 0.00 1.82
766 818 9.965902 ATCTACAAGAACCTCAAGATACAATTT 57.034 29.630 0.00 0.00 0.00 1.82
767 819 9.606631 GATCTACAAGAACCTCAAGATACAATT 57.393 33.333 0.00 0.00 0.00 2.32
768 820 8.986991 AGATCTACAAGAACCTCAAGATACAAT 58.013 33.333 0.00 0.00 0.00 2.71
770 822 7.962995 AGATCTACAAGAACCTCAAGATACA 57.037 36.000 0.00 0.00 0.00 2.29
774 826 9.658799 CATTTTAGATCTACAAGAACCTCAAGA 57.341 33.333 0.67 0.00 0.00 3.02
775 827 8.394121 GCATTTTAGATCTACAAGAACCTCAAG 58.606 37.037 0.67 0.00 0.00 3.02
776 828 7.882791 TGCATTTTAGATCTACAAGAACCTCAA 59.117 33.333 0.67 0.00 0.00 3.02
778 830 7.334421 TGTGCATTTTAGATCTACAAGAACCTC 59.666 37.037 0.67 0.00 0.00 3.85
779 831 7.168219 TGTGCATTTTAGATCTACAAGAACCT 58.832 34.615 0.67 0.00 0.00 3.50
780 832 7.377766 TGTGCATTTTAGATCTACAAGAACC 57.622 36.000 0.67 0.00 0.00 3.62
781 833 8.887717 AGATGTGCATTTTAGATCTACAAGAAC 58.112 33.333 0.67 3.58 0.00 3.01
783 835 7.712639 GGAGATGTGCATTTTAGATCTACAAGA 59.287 37.037 0.67 0.00 31.05 3.02
784 836 7.496920 TGGAGATGTGCATTTTAGATCTACAAG 59.503 37.037 0.67 0.00 36.26 3.16
786 838 6.888105 TGGAGATGTGCATTTTAGATCTACA 58.112 36.000 0.67 0.00 36.68 2.74
787 839 7.877097 AGATGGAGATGTGCATTTTAGATCTAC 59.123 37.037 0.67 0.00 34.30 2.59
790 842 6.149142 GGAGATGGAGATGTGCATTTTAGATC 59.851 42.308 0.00 0.00 34.30 2.75
793 845 5.238868 CAGGAGATGGAGATGTGCATTTTAG 59.761 44.000 0.00 0.00 34.30 1.85
795 847 3.952323 CAGGAGATGGAGATGTGCATTTT 59.048 43.478 0.00 0.00 34.30 1.82
796 848 3.552875 CAGGAGATGGAGATGTGCATTT 58.447 45.455 0.00 0.00 34.30 2.32
799 851 0.179702 GCAGGAGATGGAGATGTGCA 59.820 55.000 0.00 0.00 0.00 4.57
801 853 2.768698 GATGCAGGAGATGGAGATGTG 58.231 52.381 0.00 0.00 30.11 3.21
804 856 0.975135 CCGATGCAGGAGATGGAGAT 59.025 55.000 0.00 0.00 30.11 2.75
840 1197 7.148086 CCAAAAGAACGGATCTCCATCATTTAA 60.148 37.037 0.00 0.00 37.42 1.52
842 1199 5.126061 CCAAAAGAACGGATCTCCATCATTT 59.874 40.000 0.00 0.00 37.42 2.32
910 3291 5.708697 TCATGCAACAAACTCTGATCTTCAT 59.291 36.000 0.00 0.00 0.00 2.57
914 3295 5.950883 CAATCATGCAACAAACTCTGATCT 58.049 37.500 0.00 0.00 0.00 2.75
960 3341 1.358759 GCGGTGAATTAATGCGGGG 59.641 57.895 0.00 0.00 0.00 5.73
963 3344 0.453793 TTGGGCGGTGAATTAATGCG 59.546 50.000 0.00 0.00 0.00 4.73
972 3353 0.179067 GGATATCGTTTGGGCGGTGA 60.179 55.000 0.00 0.00 0.00 4.02
974 3355 1.227438 CGGATATCGTTTGGGCGGT 60.227 57.895 0.00 0.00 0.00 5.68
1098 3953 1.136891 CACATCGTAGGCAGGACATGA 59.863 52.381 0.00 0.00 0.00 3.07
1410 4268 2.204151 AGGGGGTGGTAGCTGCTT 60.204 61.111 7.79 0.00 0.00 3.91
1491 4349 4.761163 TCCTGTGGGAGGTGGAAA 57.239 55.556 0.00 0.00 43.37 3.13
1542 4401 1.379527 GCAAAGTCGGATTACCCAGG 58.620 55.000 0.00 0.00 34.14 4.45
1632 4491 2.676608 CTGCCCATGCCCAGTGTA 59.323 61.111 3.44 0.00 36.33 2.90
2082 6420 4.227134 CGACCAGATCCCGGGCTG 62.227 72.222 18.49 18.52 0.00 4.85
2309 6647 1.136961 TGGTGATGGTGTTGGCCCTA 61.137 55.000 0.00 0.00 0.00 3.53
2433 6771 0.383949 GATGGTGCACAACGGTGTTT 59.616 50.000 20.43 0.00 46.95 2.83
2436 6774 6.675000 CATTAAGGATGGTGCACAACGGTG 62.675 50.000 20.43 0.00 38.83 4.94
2598 9265 0.519961 ACACCGCAGCGTTATTTTCC 59.480 50.000 15.05 0.00 0.00 3.13
2612 9279 4.562082 TGTACATGAGGTTCTTAACACCG 58.438 43.478 0.00 0.00 39.56 4.94
2648 9315 6.591834 AGTCTATTTGAATCTGTTGGTCGAAG 59.408 38.462 0.00 0.00 0.00 3.79
2657 9324 9.167311 GGTATGAACAAGTCTATTTGAATCTGT 57.833 33.333 0.00 0.00 0.00 3.41
2729 9397 9.002061 TGCCAGATAATGATATATGAACCCATA 57.998 33.333 0.00 0.00 39.38 2.74
2776 9444 6.370186 AAGGGAGTAGGGTTTAAGTTACAG 57.630 41.667 0.00 0.00 0.00 2.74
2793 9461 9.907229 AAGACTTATATTTAGGAACAAAGGGAG 57.093 33.333 0.00 0.00 0.00 4.30
2822 9490 7.265647 TGTCGTCCACATTGAAATCTAAAAA 57.734 32.000 0.00 0.00 0.00 1.94
2823 9491 6.869315 TGTCGTCCACATTGAAATCTAAAA 57.131 33.333 0.00 0.00 0.00 1.52
2824 9492 7.201487 CGTATGTCGTCCACATTGAAATCTAAA 60.201 37.037 0.00 0.00 43.89 1.85
2825 9493 6.254804 CGTATGTCGTCCACATTGAAATCTAA 59.745 38.462 0.00 0.00 43.89 2.10
2826 9494 5.746721 CGTATGTCGTCCACATTGAAATCTA 59.253 40.000 0.00 0.00 43.89 1.98
2827 9495 4.566759 CGTATGTCGTCCACATTGAAATCT 59.433 41.667 0.00 0.00 43.89 2.40
2828 9496 4.260212 CCGTATGTCGTCCACATTGAAATC 60.260 45.833 0.00 0.00 43.89 2.17
2829 9497 3.621268 CCGTATGTCGTCCACATTGAAAT 59.379 43.478 0.00 0.00 43.89 2.17
2830 9498 2.997303 CCGTATGTCGTCCACATTGAAA 59.003 45.455 0.00 0.00 43.89 2.69
2831 9499 2.231721 TCCGTATGTCGTCCACATTGAA 59.768 45.455 0.00 0.00 43.89 2.69
2832 9500 1.819903 TCCGTATGTCGTCCACATTGA 59.180 47.619 0.00 0.00 43.89 2.57
2833 9501 2.287393 TCCGTATGTCGTCCACATTG 57.713 50.000 0.00 0.00 43.89 2.82
2834 9502 2.167693 ACATCCGTATGTCGTCCACATT 59.832 45.455 0.00 0.00 43.89 2.71
2835 9503 1.754803 ACATCCGTATGTCGTCCACAT 59.245 47.619 0.00 0.00 42.92 3.21
2836 9504 1.179152 ACATCCGTATGTCGTCCACA 58.821 50.000 0.00 0.00 42.92 4.17
2837 9505 3.637998 ATACATCCGTATGTCGTCCAC 57.362 47.619 0.00 0.00 42.92 4.02
2838 9506 6.314648 GTCTATATACATCCGTATGTCGTCCA 59.685 42.308 0.00 0.00 42.92 4.02
2839 9507 6.538021 AGTCTATATACATCCGTATGTCGTCC 59.462 42.308 0.00 0.00 42.92 4.79
2840 9508 7.536895 AGTCTATATACATCCGTATGTCGTC 57.463 40.000 0.00 0.00 42.92 4.20
2841 9509 7.389884 ACAAGTCTATATACATCCGTATGTCGT 59.610 37.037 0.00 0.00 42.92 4.34
2842 9510 7.749808 ACAAGTCTATATACATCCGTATGTCG 58.250 38.462 0.00 0.00 42.92 4.35
2843 9511 9.909644 AAACAAGTCTATATACATCCGTATGTC 57.090 33.333 0.00 0.00 42.92 3.06
2871 9539 8.515414 GGAGCAAAATGAGTAAATCTACACTTT 58.485 33.333 0.00 0.00 0.00 2.66
2872 9540 7.148407 CGGAGCAAAATGAGTAAATCTACACTT 60.148 37.037 0.00 0.00 0.00 3.16
2873 9541 6.313905 CGGAGCAAAATGAGTAAATCTACACT 59.686 38.462 0.00 0.00 0.00 3.55
2874 9542 6.092259 ACGGAGCAAAATGAGTAAATCTACAC 59.908 38.462 0.00 0.00 0.00 2.90
2875 9543 6.170506 ACGGAGCAAAATGAGTAAATCTACA 58.829 36.000 0.00 0.00 0.00 2.74
2876 9544 6.663944 ACGGAGCAAAATGAGTAAATCTAC 57.336 37.500 0.00 0.00 0.00 2.59
2877 9545 7.985184 ACATACGGAGCAAAATGAGTAAATCTA 59.015 33.333 0.00 0.00 0.00 1.98
2878 9546 6.823689 ACATACGGAGCAAAATGAGTAAATCT 59.176 34.615 0.00 0.00 0.00 2.40
2879 9547 7.016361 ACATACGGAGCAAAATGAGTAAATC 57.984 36.000 0.00 0.00 0.00 2.17
2880 9548 7.769044 ACTACATACGGAGCAAAATGAGTAAAT 59.231 33.333 0.00 0.00 0.00 1.40
2881 9549 7.101054 ACTACATACGGAGCAAAATGAGTAAA 58.899 34.615 0.00 0.00 0.00 2.01
2882 9550 6.636705 ACTACATACGGAGCAAAATGAGTAA 58.363 36.000 0.00 0.00 0.00 2.24
2883 9551 6.216801 ACTACATACGGAGCAAAATGAGTA 57.783 37.500 0.00 0.00 0.00 2.59
2884 9552 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
2885 9553 5.580691 TGAACTACATACGGAGCAAAATGAG 59.419 40.000 0.00 0.00 0.00 2.90
2886 9554 5.483811 TGAACTACATACGGAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
2887 9555 5.794687 TGAACTACATACGGAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
2888 9556 8.559536 CAATATGAACTACATACGGAGCAAAAT 58.440 33.333 0.00 0.00 43.12 1.82
2889 9557 7.011950 CCAATATGAACTACATACGGAGCAAAA 59.988 37.037 0.00 0.00 43.12 2.44
2890 9558 6.481976 CCAATATGAACTACATACGGAGCAAA 59.518 38.462 0.00 0.00 43.12 3.68
2891 9559 5.989168 CCAATATGAACTACATACGGAGCAA 59.011 40.000 0.00 0.00 43.12 3.91
2892 9560 5.303333 TCCAATATGAACTACATACGGAGCA 59.697 40.000 0.00 0.00 43.12 4.26
2893 9561 5.779922 TCCAATATGAACTACATACGGAGC 58.220 41.667 0.00 0.00 43.12 4.70
2894 9562 8.307483 AGATTCCAATATGAACTACATACGGAG 58.693 37.037 0.00 0.00 42.33 4.63
2895 9563 8.190326 AGATTCCAATATGAACTACATACGGA 57.810 34.615 0.00 0.00 43.12 4.69
2896 9564 8.833231 AAGATTCCAATATGAACTACATACGG 57.167 34.615 0.00 0.00 43.12 4.02
2924 9592 9.907229 CCCTCTGTTCCTAAATATAAGTCTTTT 57.093 33.333 0.00 0.00 0.00 2.27
2925 9593 9.280456 TCCCTCTGTTCCTAAATATAAGTCTTT 57.720 33.333 0.00 0.00 0.00 2.52
2926 9594 8.855804 TCCCTCTGTTCCTAAATATAAGTCTT 57.144 34.615 0.00 0.00 0.00 3.01
2927 9595 8.068733 ACTCCCTCTGTTCCTAAATATAAGTCT 58.931 37.037 0.00 0.00 0.00 3.24
2928 9596 8.252624 ACTCCCTCTGTTCCTAAATATAAGTC 57.747 38.462 0.00 0.00 0.00 3.01
2929 9597 9.900112 ATACTCCCTCTGTTCCTAAATATAAGT 57.100 33.333 0.00 0.00 0.00 2.24
2931 9599 9.892444 TCATACTCCCTCTGTTCCTAAATATAA 57.108 33.333 0.00 0.00 0.00 0.98
2933 9601 8.980832 ATCATACTCCCTCTGTTCCTAAATAT 57.019 34.615 0.00 0.00 0.00 1.28
2935 9603 8.820831 CATATCATACTCCCTCTGTTCCTAAAT 58.179 37.037 0.00 0.00 0.00 1.40
2936 9604 8.010697 TCATATCATACTCCCTCTGTTCCTAAA 58.989 37.037 0.00 0.00 0.00 1.85
2937 9605 7.535738 TCATATCATACTCCCTCTGTTCCTAA 58.464 38.462 0.00 0.00 0.00 2.69
2938 9606 7.103745 TCATATCATACTCCCTCTGTTCCTA 57.896 40.000 0.00 0.00 0.00 2.94
2939 9607 5.970289 TCATATCATACTCCCTCTGTTCCT 58.030 41.667 0.00 0.00 0.00 3.36
2940 9608 6.638610 CATCATATCATACTCCCTCTGTTCC 58.361 44.000 0.00 0.00 0.00 3.62
2941 9609 6.105333 GCATCATATCATACTCCCTCTGTTC 58.895 44.000 0.00 0.00 0.00 3.18
2942 9610 5.337089 CGCATCATATCATACTCCCTCTGTT 60.337 44.000 0.00 0.00 0.00 3.16
2943 9611 4.159321 CGCATCATATCATACTCCCTCTGT 59.841 45.833 0.00 0.00 0.00 3.41
2944 9612 4.159321 ACGCATCATATCATACTCCCTCTG 59.841 45.833 0.00 0.00 0.00 3.35
2945 9613 4.348486 ACGCATCATATCATACTCCCTCT 58.652 43.478 0.00 0.00 0.00 3.69
2946 9614 4.727507 ACGCATCATATCATACTCCCTC 57.272 45.455 0.00 0.00 0.00 4.30
2947 9615 5.489792 AAACGCATCATATCATACTCCCT 57.510 39.130 0.00 0.00 0.00 4.20
2948 9616 7.849804 AATAAACGCATCATATCATACTCCC 57.150 36.000 0.00 0.00 0.00 4.30
2949 9617 9.760660 GAAAATAAACGCATCATATCATACTCC 57.239 33.333 0.00 0.00 0.00 3.85
2950 9618 9.760660 GGAAAATAAACGCATCATATCATACTC 57.239 33.333 0.00 0.00 0.00 2.59
2951 9619 9.507329 AGGAAAATAAACGCATCATATCATACT 57.493 29.630 0.00 0.00 0.00 2.12
2954 9622 8.299570 GGAAGGAAAATAAACGCATCATATCAT 58.700 33.333 0.00 0.00 0.00 2.45
2995 9663 5.135508 GTAGTGTGAGCTACCTTCTGAAA 57.864 43.478 0.00 0.00 36.30 2.69
3035 9704 7.114882 TGGAAATTGCAAAACGATAAATGTG 57.885 32.000 1.71 0.00 0.00 3.21
3036 9705 7.601886 TCATGGAAATTGCAAAACGATAAATGT 59.398 29.630 1.71 0.00 0.00 2.71
3070 9739 3.126858 CGTCCAACATGTCGAAATGGATT 59.873 43.478 19.65 3.17 41.83 3.01
3071 9740 2.677836 CGTCCAACATGTCGAAATGGAT 59.322 45.455 19.65 5.48 41.83 3.41
3248 9923 4.725490 AGTGCAAACTAGCTTTCCCTAAA 58.275 39.130 0.00 0.00 34.99 1.85
3250 9925 4.367039 AAGTGCAAACTAGCTTTCCCTA 57.633 40.909 0.00 0.00 34.99 3.53
3299 9974 8.980481 AGTTTTCTTCTTCCTCATGTCTTAAA 57.020 30.769 0.00 0.00 0.00 1.52
3308 9983 3.552273 CGACCGAGTTTTCTTCTTCCTCA 60.552 47.826 0.00 0.00 0.00 3.86
3325 10000 0.319900 GGTGGGATGATGATCGACCG 60.320 60.000 0.00 0.00 0.00 4.79
3329 10004 2.365293 TGTACTGGTGGGATGATGATCG 59.635 50.000 0.00 0.00 0.00 3.69
3335 10010 3.181329 ACTTGATGTACTGGTGGGATGA 58.819 45.455 0.00 0.00 0.00 2.92
3341 10016 7.615582 ATGATGTAAACTTGATGTACTGGTG 57.384 36.000 0.00 0.00 0.00 4.17
3352 10027 9.708222 GCTAGACATGTTTATGATGTAAACTTG 57.292 33.333 17.63 17.63 42.86 3.16
3353 10028 9.448438 TGCTAGACATGTTTATGATGTAAACTT 57.552 29.630 0.00 3.65 38.04 2.66
3354 10029 9.448438 TTGCTAGACATGTTTATGATGTAAACT 57.552 29.630 0.00 0.00 38.04 2.66
3355 10030 9.708222 CTTGCTAGACATGTTTATGATGTAAAC 57.292 33.333 0.00 4.24 37.73 2.01
3356 10031 8.892723 CCTTGCTAGACATGTTTATGATGTAAA 58.107 33.333 0.00 0.00 37.73 2.01
3357 10032 8.264347 TCCTTGCTAGACATGTTTATGATGTAA 58.736 33.333 0.00 0.00 37.73 2.41
3358 10033 7.791029 TCCTTGCTAGACATGTTTATGATGTA 58.209 34.615 0.00 0.00 37.73 2.29
3359 10034 6.653020 TCCTTGCTAGACATGTTTATGATGT 58.347 36.000 0.00 0.00 37.73 3.06
3360 10035 6.988580 TCTCCTTGCTAGACATGTTTATGATG 59.011 38.462 0.00 0.00 37.73 3.07
3361 10036 7.129457 TCTCCTTGCTAGACATGTTTATGAT 57.871 36.000 0.00 0.00 37.73 2.45
3362 10037 6.544928 TCTCCTTGCTAGACATGTTTATGA 57.455 37.500 0.00 0.00 37.73 2.15
3363 10038 6.765036 ACATCTCCTTGCTAGACATGTTTATG 59.235 38.462 0.00 0.00 40.24 1.90
3364 10039 6.765036 CACATCTCCTTGCTAGACATGTTTAT 59.235 38.462 0.00 0.00 0.00 1.40
3365 10040 6.108687 CACATCTCCTTGCTAGACATGTTTA 58.891 40.000 0.00 0.00 0.00 2.01
3366 10041 4.940046 CACATCTCCTTGCTAGACATGTTT 59.060 41.667 0.00 0.00 0.00 2.83
3367 10042 4.019860 ACACATCTCCTTGCTAGACATGTT 60.020 41.667 0.00 0.00 0.00 2.71
3368 10043 3.517100 ACACATCTCCTTGCTAGACATGT 59.483 43.478 0.00 0.00 0.00 3.21
3369 10044 4.118410 GACACATCTCCTTGCTAGACATG 58.882 47.826 0.00 0.00 0.00 3.21
3370 10045 3.771479 TGACACATCTCCTTGCTAGACAT 59.229 43.478 0.00 0.00 0.00 3.06
3371 10046 3.165071 TGACACATCTCCTTGCTAGACA 58.835 45.455 0.00 0.00 0.00 3.41
3372 10047 3.876274 TGACACATCTCCTTGCTAGAC 57.124 47.619 0.00 0.00 0.00 2.59
3373 10048 3.196469 CCTTGACACATCTCCTTGCTAGA 59.804 47.826 0.00 0.00 0.00 2.43
3374 10049 3.055530 ACCTTGACACATCTCCTTGCTAG 60.056 47.826 0.00 0.00 0.00 3.42
3375 10050 2.906389 ACCTTGACACATCTCCTTGCTA 59.094 45.455 0.00 0.00 0.00 3.49
3376 10051 1.701847 ACCTTGACACATCTCCTTGCT 59.298 47.619 0.00 0.00 0.00 3.91
3377 10052 1.808945 CACCTTGACACATCTCCTTGC 59.191 52.381 0.00 0.00 0.00 4.01
3378 10053 3.131709 ACACCTTGACACATCTCCTTG 57.868 47.619 0.00 0.00 0.00 3.61
3379 10054 3.480470 CAACACCTTGACACATCTCCTT 58.520 45.455 0.00 0.00 0.00 3.36
3380 10055 2.224621 CCAACACCTTGACACATCTCCT 60.225 50.000 0.00 0.00 0.00 3.69
3381 10056 2.154462 CCAACACCTTGACACATCTCC 58.846 52.381 0.00 0.00 0.00 3.71
3382 10057 1.537202 GCCAACACCTTGACACATCTC 59.463 52.381 0.00 0.00 0.00 2.75
3383 10058 1.609208 GCCAACACCTTGACACATCT 58.391 50.000 0.00 0.00 0.00 2.90
3384 10059 0.598065 GGCCAACACCTTGACACATC 59.402 55.000 0.00 0.00 0.00 3.06
3385 10060 0.185901 AGGCCAACACCTTGACACAT 59.814 50.000 5.01 0.00 36.28 3.21
3386 10061 0.465460 GAGGCCAACACCTTGACACA 60.465 55.000 5.01 0.00 41.32 3.72
3387 10062 1.172812 GGAGGCCAACACCTTGACAC 61.173 60.000 5.01 0.00 41.32 3.67
3388 10063 1.150536 GGAGGCCAACACCTTGACA 59.849 57.895 5.01 0.00 41.32 3.58
3389 10064 1.603739 GGGAGGCCAACACCTTGAC 60.604 63.158 5.01 0.00 41.32 3.18
3390 10065 2.843545 GGGAGGCCAACACCTTGA 59.156 61.111 5.01 0.00 41.32 3.02
3391 10066 2.672996 CGGGAGGCCAACACCTTG 60.673 66.667 5.01 0.00 41.32 3.61
3392 10067 2.852075 TCGGGAGGCCAACACCTT 60.852 61.111 5.01 0.00 41.32 3.50
3393 10068 3.322466 CTCGGGAGGCCAACACCT 61.322 66.667 5.01 0.00 45.04 4.00
3395 10070 3.842925 TTGCTCGGGAGGCCAACAC 62.843 63.158 5.01 0.00 0.00 3.32
3396 10071 2.905996 ATTGCTCGGGAGGCCAACA 61.906 57.895 5.01 0.00 0.00 3.33
3397 10072 2.044946 ATTGCTCGGGAGGCCAAC 60.045 61.111 5.01 0.00 0.00 3.77
3398 10073 2.045045 CATTGCTCGGGAGGCCAA 60.045 61.111 5.01 0.00 0.00 4.52
3399 10074 4.802051 GCATTGCTCGGGAGGCCA 62.802 66.667 5.01 0.00 0.00 5.36
3400 10075 4.496336 AGCATTGCTCGGGAGGCC 62.496 66.667 5.03 0.00 30.62 5.19
3401 10076 2.899339 GAGCATTGCTCGGGAGGC 60.899 66.667 21.99 0.00 45.85 4.70
3408 10083 6.035866 CCATCTATAAGATTCGAGCATTGCTC 59.964 42.308 25.55 25.55 41.49 4.26
3409 10084 5.873712 CCATCTATAAGATTCGAGCATTGCT 59.126 40.000 11.79 11.79 35.33 3.91
3410 10085 5.871524 TCCATCTATAAGATTCGAGCATTGC 59.128 40.000 0.00 0.00 31.32 3.56
3411 10086 7.895975 TTCCATCTATAAGATTCGAGCATTG 57.104 36.000 0.00 0.00 31.32 2.82
3412 10087 9.512588 AAATTCCATCTATAAGATTCGAGCATT 57.487 29.630 0.00 0.00 31.32 3.56
3413 10088 9.160496 GAAATTCCATCTATAAGATTCGAGCAT 57.840 33.333 0.00 0.00 31.32 3.79
3414 10089 8.150296 TGAAATTCCATCTATAAGATTCGAGCA 58.850 33.333 0.00 0.00 31.32 4.26
3415 10090 8.539770 TGAAATTCCATCTATAAGATTCGAGC 57.460 34.615 0.00 0.00 31.32 5.03
3417 10092 9.440773 CCATGAAATTCCATCTATAAGATTCGA 57.559 33.333 0.00 0.00 31.32 3.71
3418 10093 8.671921 CCCATGAAATTCCATCTATAAGATTCG 58.328 37.037 0.00 0.00 31.32 3.34
3419 10094 8.465201 GCCCATGAAATTCCATCTATAAGATTC 58.535 37.037 0.00 0.00 31.32 2.52
3420 10095 7.398332 GGCCCATGAAATTCCATCTATAAGATT 59.602 37.037 0.00 0.00 31.32 2.40
3421 10096 6.894103 GGCCCATGAAATTCCATCTATAAGAT 59.106 38.462 0.00 0.00 34.74 2.40
3422 10097 6.183361 TGGCCCATGAAATTCCATCTATAAGA 60.183 38.462 0.00 0.00 0.00 2.10
3423 10098 6.012113 TGGCCCATGAAATTCCATCTATAAG 58.988 40.000 0.00 0.00 0.00 1.73
3424 10099 5.963092 TGGCCCATGAAATTCCATCTATAA 58.037 37.500 0.00 0.00 0.00 0.98
3425 10100 5.597430 TGGCCCATGAAATTCCATCTATA 57.403 39.130 0.00 0.00 0.00 1.31
3426 10101 4.474303 TGGCCCATGAAATTCCATCTAT 57.526 40.909 0.00 0.00 0.00 1.98
3427 10102 3.969466 TGGCCCATGAAATTCCATCTA 57.031 42.857 0.00 0.00 0.00 1.98
3428 10103 2.852714 TGGCCCATGAAATTCCATCT 57.147 45.000 0.00 0.00 0.00 2.90
3429 10104 3.910568 TTTGGCCCATGAAATTCCATC 57.089 42.857 0.00 0.00 0.00 3.51
3430 10105 3.781407 TCATTTGGCCCATGAAATTCCAT 59.219 39.130 11.48 0.00 0.00 3.41
3431 10106 3.179685 TCATTTGGCCCATGAAATTCCA 58.820 40.909 11.48 0.00 0.00 3.53
3432 10107 3.910568 TCATTTGGCCCATGAAATTCC 57.089 42.857 11.48 0.00 0.00 3.01
3433 10108 5.472820 TGTTTTCATTTGGCCCATGAAATTC 59.527 36.000 28.23 24.21 45.61 2.17
3434 10109 5.383476 TGTTTTCATTTGGCCCATGAAATT 58.617 33.333 28.23 2.10 45.61 1.82
3435 10110 4.983053 TGTTTTCATTTGGCCCATGAAAT 58.017 34.783 28.23 14.62 45.61 2.17
3436 10111 4.428294 TGTTTTCATTTGGCCCATGAAA 57.572 36.364 25.80 25.80 44.99 2.69
3437 10112 4.428294 TTGTTTTCATTTGGCCCATGAA 57.572 36.364 19.08 19.08 38.59 2.57
3438 10113 4.565236 GGATTGTTTTCATTTGGCCCATGA 60.565 41.667 10.10 10.10 0.00 3.07
3439 10114 3.690628 GGATTGTTTTCATTTGGCCCATG 59.309 43.478 0.00 2.45 0.00 3.66
3440 10115 3.619487 CGGATTGTTTTCATTTGGCCCAT 60.619 43.478 0.00 0.00 0.00 4.00
3441 10116 2.289320 CGGATTGTTTTCATTTGGCCCA 60.289 45.455 0.00 0.00 0.00 5.36
3442 10117 2.345876 CGGATTGTTTTCATTTGGCCC 58.654 47.619 0.00 0.00 0.00 5.80
3443 10118 1.731709 GCGGATTGTTTTCATTTGGCC 59.268 47.619 0.00 0.00 0.00 5.36
3444 10119 2.411904 TGCGGATTGTTTTCATTTGGC 58.588 42.857 0.00 0.00 0.00 4.52
3445 10120 4.057432 ACTTGCGGATTGTTTTCATTTGG 58.943 39.130 0.00 0.00 0.00 3.28
3446 10121 6.949578 ATACTTGCGGATTGTTTTCATTTG 57.050 33.333 0.00 0.00 0.00 2.32
3447 10122 6.368516 CCAATACTTGCGGATTGTTTTCATTT 59.631 34.615 0.00 0.00 32.22 2.32
3448 10123 5.868801 CCAATACTTGCGGATTGTTTTCATT 59.131 36.000 0.00 0.00 32.22 2.57
3449 10124 5.047377 ACCAATACTTGCGGATTGTTTTCAT 60.047 36.000 0.00 0.00 32.22 2.57
3450 10125 4.279671 ACCAATACTTGCGGATTGTTTTCA 59.720 37.500 0.00 0.00 32.22 2.69
3451 10126 4.621034 CACCAATACTTGCGGATTGTTTTC 59.379 41.667 0.00 0.00 32.22 2.29
3452 10127 4.279671 TCACCAATACTTGCGGATTGTTTT 59.720 37.500 0.00 0.00 32.22 2.43
3453 10128 3.823873 TCACCAATACTTGCGGATTGTTT 59.176 39.130 0.00 0.00 32.22 2.83
3454 10129 3.417101 TCACCAATACTTGCGGATTGTT 58.583 40.909 0.00 0.00 32.22 2.83
3455 10130 3.009723 CTCACCAATACTTGCGGATTGT 58.990 45.455 0.00 0.00 32.22 2.71
3456 10131 3.009723 ACTCACCAATACTTGCGGATTG 58.990 45.455 0.00 0.00 33.63 2.67
3457 10132 3.350219 ACTCACCAATACTTGCGGATT 57.650 42.857 0.00 0.00 0.00 3.01
3458 10133 4.442706 CTTACTCACCAATACTTGCGGAT 58.557 43.478 0.00 0.00 0.00 4.18
3459 10134 3.369052 CCTTACTCACCAATACTTGCGGA 60.369 47.826 0.00 0.00 0.00 5.54
3460 10135 2.936498 CCTTACTCACCAATACTTGCGG 59.064 50.000 0.00 0.00 0.00 5.69
3461 10136 3.857052 TCCTTACTCACCAATACTTGCG 58.143 45.455 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.