Multiple sequence alignment - TraesCS6D01G354500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G354500 chr6D 100.000 5808 0 0 3164 8971 449920393 449926200 0.000000e+00 10726.0
1 TraesCS6D01G354500 chr6D 100.000 2855 0 0 1 2855 449917230 449920084 0.000000e+00 5273.0
2 TraesCS6D01G354500 chr6D 87.550 2008 210 21 4708 6693 449971407 449973396 0.000000e+00 2287.0
3 TraesCS6D01G354500 chr6D 86.122 1506 106 39 7008 8443 449991851 449993323 0.000000e+00 1528.0
4 TraesCS6D01G354500 chr6D 84.028 1559 195 24 4920 6464 449993960 449995478 0.000000e+00 1450.0
5 TraesCS6D01G354500 chr6D 97.753 534 9 3 8439 8971 452852674 452853205 0.000000e+00 917.0
6 TraesCS6D01G354500 chr6D 82.971 552 54 19 4093 4615 449993052 449993592 6.350000e-126 462.0
7 TraesCS6D01G354500 chr6D 84.337 415 55 8 3434 3845 54416954 54416547 1.810000e-106 398.0
8 TraesCS6D01G354500 chr6D 87.842 329 33 4 6586 6913 449920781 449921103 6.570000e-101 379.0
9 TraesCS6D01G354500 chr6D 87.500 240 18 4 6695 6923 449973560 449973798 5.340000e-67 267.0
10 TraesCS6D01G354500 chr6D 84.351 262 21 10 4347 4605 449956850 449957094 1.160000e-58 239.0
11 TraesCS6D01G354500 chr6D 86.747 166 15 3 3937 4096 449991851 449992015 2.570000e-40 178.0
12 TraesCS6D01G354500 chr6D 93.023 86 6 0 1592 1677 54417726 54417641 9.460000e-25 126.0
13 TraesCS6D01G354500 chr6D 92.593 81 6 0 4715 4795 449993825 449993905 5.690000e-22 117.0
14 TraesCS6D01G354500 chr6D 85.294 68 7 3 4425 4490 82089828 82089762 5.810000e-07 67.6
15 TraesCS6D01G354500 chr6B 90.177 2718 132 68 223 2855 682118367 682121034 0.000000e+00 3415.0
16 TraesCS6D01G354500 chr6B 95.241 1534 55 10 3180 4704 682121046 682122570 0.000000e+00 2412.0
17 TraesCS6D01G354500 chr6B 86.691 2179 241 29 4776 6923 682135928 682138088 0.000000e+00 2372.0
18 TraesCS6D01G354500 chr6B 94.662 1480 56 12 3235 4704 682317005 682315539 0.000000e+00 2274.0
19 TraesCS6D01G354500 chr6B 91.631 1410 69 19 1454 2855 682318627 682317259 0.000000e+00 1905.0
20 TraesCS6D01G354500 chr6B 84.093 1119 161 7 4933 6039 682312817 682311704 0.000000e+00 1064.0
21 TraesCS6D01G354500 chr6B 92.687 629 23 13 817 1425 682319251 682318626 0.000000e+00 885.0
22 TraesCS6D01G354500 chr6B 86.163 860 56 15 6935 7761 682315542 682314713 0.000000e+00 870.0
23 TraesCS6D01G354500 chr6B 89.799 647 62 3 5905 6549 682310373 682309729 0.000000e+00 826.0
24 TraesCS6D01G354500 chr6B 90.317 568 37 6 7011 7565 682192877 682193439 0.000000e+00 728.0
25 TraesCS6D01G354500 chr6B 90.663 407 25 4 6932 7325 682122564 682122970 6.170000e-146 529.0
26 TraesCS6D01G354500 chr6B 81.647 583 58 28 6585 7156 682121408 682121952 1.070000e-118 438.0
27 TraesCS6D01G354500 chr6B 86.350 337 35 7 6585 6917 682316696 682316367 3.080000e-94 357.0
28 TraesCS6D01G354500 chr6B 85.174 317 28 6 7464 7761 682122989 682123305 3.150000e-79 307.0
29 TraesCS6D01G354500 chr6B 90.135 223 16 5 1 218 682117800 682118021 1.470000e-72 285.0
30 TraesCS6D01G354500 chr6B 88.940 217 18 6 6 220 682325763 682325551 6.910000e-66 263.0
31 TraesCS6D01G354500 chr6B 86.026 229 22 7 3876 4096 682315533 682315307 4.190000e-58 237.0
32 TraesCS6D01G354500 chr6B 84.167 240 26 7 3867 4096 682122567 682122804 1.170000e-53 222.0
33 TraesCS6D01G354500 chr6B 91.026 78 6 1 1027 1103 682126637 682126714 4.430000e-18 104.0
34 TraesCS6D01G354500 chr6B 84.722 72 8 3 4421 4490 156929401 156929331 1.620000e-07 69.4
35 TraesCS6D01G354500 chr6B 93.333 45 2 1 420 463 588166761 588166717 2.090000e-06 65.8
36 TraesCS6D01G354500 chr6A 87.590 1668 182 13 4776 6433 595498000 595499652 0.000000e+00 1910.0
37 TraesCS6D01G354500 chr6A 85.082 429 40 8 7355 7761 595492004 595492430 5.010000e-112 416.0
38 TraesCS6D01G354500 chr6A 88.968 281 18 9 6416 6691 595501960 595502232 1.440000e-87 335.0
39 TraesCS6D01G354500 chr6A 92.140 229 15 3 7125 7352 595491650 595491876 4.040000e-83 320.0
40 TraesCS6D01G354500 chr6A 84.545 220 30 4 4094 4310 575472684 575472466 1.960000e-51 215.0
41 TraesCS6D01G354500 chr6A 79.580 333 41 13 1504 1810 324804072 324803741 7.060000e-51 213.0
42 TraesCS6D01G354500 chr6A 86.992 123 13 1 878 1000 595493126 595493245 1.570000e-27 135.0
43 TraesCS6D01G354500 chr6A 84.722 72 8 3 4421 4490 98602680 98602610 1.620000e-07 69.4
44 TraesCS6D01G354500 chr6A 93.478 46 2 1 420 464 539984661 539984616 5.810000e-07 67.6
45 TraesCS6D01G354500 chr2D 98.669 526 7 0 8446 8971 88051437 88050912 0.000000e+00 933.0
46 TraesCS6D01G354500 chr2D 97.388 536 13 1 8437 8971 5590774 5591309 0.000000e+00 911.0
47 TraesCS6D01G354500 chr2D 84.545 220 30 4 4094 4310 40913214 40912996 1.960000e-51 215.0
48 TraesCS6D01G354500 chr1D 98.295 528 8 1 8444 8971 2168328 2168854 0.000000e+00 924.0
49 TraesCS6D01G354500 chr1D 98.282 524 9 0 8448 8971 38746257 38746780 0.000000e+00 918.0
50 TraesCS6D01G354500 chr1D 84.504 413 58 5 3434 3845 460357265 460357672 3.900000e-108 403.0
51 TraesCS6D01G354500 chr1D 76.499 817 123 42 6586 7361 479774533 479775321 1.830000e-101 381.0
52 TraesCS6D01G354500 chr1D 86.364 242 19 7 1808 2043 479773927 479774160 1.500000e-62 252.0
53 TraesCS6D01G354500 chr1D 85.000 220 29 4 4094 4310 95879978 95879760 4.220000e-53 220.0
54 TraesCS6D01G354500 chr1D 84.545 220 30 4 4094 4310 4053139 4053357 1.960000e-51 215.0
55 TraesCS6D01G354500 chr1D 86.957 161 15 3 1804 1961 489736867 489736710 9.260000e-40 176.0
56 TraesCS6D01G354500 chr1D 97.101 69 2 0 1742 1810 460356675 460356743 5.690000e-22 117.0
57 TraesCS6D01G354500 chr1D 97.101 69 2 0 1742 1810 479773759 479773827 5.690000e-22 117.0
58 TraesCS6D01G354500 chr7D 97.588 539 9 4 8433 8971 520314418 520313884 0.000000e+00 920.0
59 TraesCS6D01G354500 chr7D 98.092 524 10 0 8448 8971 527991906 527991383 0.000000e+00 913.0
60 TraesCS6D01G354500 chr7D 84.504 413 58 5 3434 3845 31391984 31392391 3.900000e-108 403.0
61 TraesCS6D01G354500 chr7D 84.262 413 59 5 3434 3845 179698706 179698299 1.810000e-106 398.0
62 TraesCS6D01G354500 chr7D 86.335 161 16 3 1804 1961 31391559 31391716 4.310000e-38 171.0
63 TraesCS6D01G354500 chr7D 86.335 161 16 3 1804 1961 331779770 331779613 4.310000e-38 171.0
64 TraesCS6D01G354500 chr7D 92.857 42 3 0 1353 1394 587089748 587089707 2.700000e-05 62.1
65 TraesCS6D01G354500 chr7D 79.121 91 15 3 7842 7930 64691073 64691161 9.730000e-05 60.2
66 TraesCS6D01G354500 chr3D 97.925 530 11 0 8442 8971 522515874 522516403 0.000000e+00 918.0
67 TraesCS6D01G354500 chr3D 98.092 524 9 1 8448 8971 530303923 530303401 0.000000e+00 911.0
68 TraesCS6D01G354500 chr3D 84.746 413 57 5 3434 3845 50834751 50835158 8.380000e-110 409.0
69 TraesCS6D01G354500 chr3D 85.567 388 40 12 2477 2855 80947787 80948167 8.440000e-105 392.0
70 TraesCS6D01G354500 chr3D 84.774 243 27 9 7847 8085 64478273 64478509 1.510000e-57 235.0
71 TraesCS6D01G354500 chr3D 89.286 168 18 0 3178 3345 80948175 80948342 2.540000e-50 211.0
72 TraesCS6D01G354500 chr3D 86.957 161 15 3 1804 1961 50834327 50834484 9.260000e-40 176.0
73 TraesCS6D01G354500 chr3D 83.051 177 21 7 7869 8043 602807259 602807428 1.560000e-32 152.0
74 TraesCS6D01G354500 chr1A 76.859 834 137 33 6586 7388 576220867 576221675 3.870000e-113 420.0
75 TraesCS6D01G354500 chr1A 80.299 335 35 15 1506 1810 576219838 576220171 3.260000e-54 224.0
76 TraesCS6D01G354500 chr1A 84.545 220 32 2 4093 4310 460547200 460547419 5.450000e-52 217.0
77 TraesCS6D01G354500 chrUn 84.504 413 58 5 3434 3845 105262305 105262712 3.900000e-108 403.0
78 TraesCS6D01G354500 chrUn 86.957 161 15 3 1804 1961 105261880 105262037 9.260000e-40 176.0
79 TraesCS6D01G354500 chrUn 97.101 69 2 0 1742 1810 105261715 105261783 5.690000e-22 117.0
80 TraesCS6D01G354500 chrUn 96.774 31 1 0 419 449 236406602 236406632 1.600000e-02 52.8
81 TraesCS6D01G354500 chr3B 76.884 796 130 38 6586 7359 8943190 8943953 1.400000e-107 401.0
82 TraesCS6D01G354500 chr4D 84.262 413 59 5 3434 3845 3463522 3463929 1.810000e-106 398.0
83 TraesCS6D01G354500 chr4D 84.615 221 30 4 4093 4310 322280833 322281052 5.450000e-52 217.0
84 TraesCS6D01G354500 chr4D 97.101 69 2 0 1742 1810 3462932 3463000 5.690000e-22 117.0
85 TraesCS6D01G354500 chr3A 84.021 388 41 11 2477 2855 95023185 95023560 3.980000e-93 353.0
86 TraesCS6D01G354500 chr3A 82.629 213 27 4 7837 8046 453313532 453313327 7.160000e-41 180.0
87 TraesCS6D01G354500 chr1B 81.558 385 40 20 1449 1810 668053691 668054067 1.140000e-73 289.0
88 TraesCS6D01G354500 chr1B 82.192 146 23 3 7867 8011 106387109 106387252 1.220000e-23 122.0
89 TraesCS6D01G354500 chr5B 84.553 246 29 8 7842 8081 581133024 581132782 1.510000e-57 235.0
90 TraesCS6D01G354500 chr4B 83.691 233 33 5 4094 4322 590042234 590042465 1.960000e-51 215.0
91 TraesCS6D01G354500 chr4B 78.462 325 44 11 1511 1810 176473158 176472835 1.190000e-43 189.0
92 TraesCS6D01G354500 chr4B 95.455 44 1 1 420 462 143901215 143901172 1.620000e-07 69.4
93 TraesCS6D01G354500 chr5D 86.957 161 15 3 1804 1961 442365150 442365307 9.260000e-40 176.0
94 TraesCS6D01G354500 chr5D 97.101 69 2 0 1742 1810 442364985 442365053 5.690000e-22 117.0
95 TraesCS6D01G354500 chr4A 95.455 44 1 1 420 462 2639161 2639204 1.620000e-07 69.4
96 TraesCS6D01G354500 chr4A 93.333 45 3 0 5204 5248 623689784 623689740 5.810000e-07 67.6
97 TraesCS6D01G354500 chr4A 91.489 47 4 0 5204 5250 623749590 623749544 2.090000e-06 65.8
98 TraesCS6D01G354500 chr2A 84.932 73 4 6 6 73 131540758 131540688 5.810000e-07 67.6
99 TraesCS6D01G354500 chr2A 84.932 73 4 6 6 73 131561281 131561211 5.810000e-07 67.6
100 TraesCS6D01G354500 chr5A 96.875 32 1 0 421 452 94312563 94312532 5.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G354500 chr6D 449917230 449926200 8970 False 7999.500000 10726 100.000000 1 8971 2 chr6D.!!$F4 8970
1 TraesCS6D01G354500 chr6D 449971407 449973798 2391 False 1277.000000 2287 87.525000 4708 6923 2 chr6D.!!$F5 2215
2 TraesCS6D01G354500 chr6D 452852674 452853205 531 False 917.000000 917 97.753000 8439 8971 1 chr6D.!!$F3 532
3 TraesCS6D01G354500 chr6D 449991851 449995478 3627 False 747.000000 1528 86.492200 3937 8443 5 chr6D.!!$F6 4506
4 TraesCS6D01G354500 chr6D 54416547 54417726 1179 True 262.000000 398 88.680000 1592 3845 2 chr6D.!!$R2 2253
5 TraesCS6D01G354500 chr6B 682135928 682138088 2160 False 2372.000000 2372 86.691000 4776 6923 1 chr6B.!!$F1 2147
6 TraesCS6D01G354500 chr6B 682309729 682319251 9522 True 1052.250000 2274 88.926375 817 7761 8 chr6B.!!$R4 6944
7 TraesCS6D01G354500 chr6B 682117800 682126714 8914 False 964.000000 3415 88.528750 1 7761 8 chr6B.!!$F3 7760
8 TraesCS6D01G354500 chr6B 682192877 682193439 562 False 728.000000 728 90.317000 7011 7565 1 chr6B.!!$F2 554
9 TraesCS6D01G354500 chr6A 595498000 595502232 4232 False 1122.500000 1910 88.279000 4776 6691 2 chr6A.!!$F2 1915
10 TraesCS6D01G354500 chr6A 595491650 595493245 1595 False 290.333333 416 88.071333 878 7761 3 chr6A.!!$F1 6883
11 TraesCS6D01G354500 chr2D 88050912 88051437 525 True 933.000000 933 98.669000 8446 8971 1 chr2D.!!$R2 525
12 TraesCS6D01G354500 chr2D 5590774 5591309 535 False 911.000000 911 97.388000 8437 8971 1 chr2D.!!$F1 534
13 TraesCS6D01G354500 chr1D 2168328 2168854 526 False 924.000000 924 98.295000 8444 8971 1 chr1D.!!$F1 527
14 TraesCS6D01G354500 chr1D 38746257 38746780 523 False 918.000000 918 98.282000 8448 8971 1 chr1D.!!$F3 523
15 TraesCS6D01G354500 chr1D 460356675 460357672 997 False 260.000000 403 90.802500 1742 3845 2 chr1D.!!$F4 2103
16 TraesCS6D01G354500 chr1D 479773759 479775321 1562 False 250.000000 381 86.654667 1742 7361 3 chr1D.!!$F5 5619
17 TraesCS6D01G354500 chr7D 520313884 520314418 534 True 920.000000 920 97.588000 8433 8971 1 chr7D.!!$R3 538
18 TraesCS6D01G354500 chr7D 527991383 527991906 523 True 913.000000 913 98.092000 8448 8971 1 chr7D.!!$R4 523
19 TraesCS6D01G354500 chr7D 31391559 31392391 832 False 287.000000 403 85.419500 1804 3845 2 chr7D.!!$F2 2041
20 TraesCS6D01G354500 chr3D 522515874 522516403 529 False 918.000000 918 97.925000 8442 8971 1 chr3D.!!$F2 529
21 TraesCS6D01G354500 chr3D 530303401 530303923 522 True 911.000000 911 98.092000 8448 8971 1 chr3D.!!$R1 523
22 TraesCS6D01G354500 chr3D 80947787 80948342 555 False 301.500000 392 87.426500 2477 3345 2 chr3D.!!$F5 868
23 TraesCS6D01G354500 chr3D 50834327 50835158 831 False 292.500000 409 85.851500 1804 3845 2 chr3D.!!$F4 2041
24 TraesCS6D01G354500 chr1A 576219838 576221675 1837 False 322.000000 420 78.579000 1506 7388 2 chr1A.!!$F2 5882
25 TraesCS6D01G354500 chrUn 105261715 105262712 997 False 232.000000 403 89.520667 1742 3845 3 chrUn.!!$F2 2103
26 TraesCS6D01G354500 chr3B 8943190 8943953 763 False 401.000000 401 76.884000 6586 7359 1 chr3B.!!$F1 773
27 TraesCS6D01G354500 chr4D 3462932 3463929 997 False 257.500000 398 90.681500 1742 3845 2 chr4D.!!$F2 2103

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
802 1188 0.029300 GCACATGCAACGTGTCACTT 59.971 50.000 17.87 0.00 41.59 3.16 F
808 1194 0.316196 GCAACGTGTCACTTGTCAGC 60.316 55.000 13.29 5.40 0.00 4.26 F
1446 1888 0.452784 GTCAGCAAACCGTTGATCGC 60.453 55.000 0.00 0.00 37.18 4.58 F
2475 3147 0.107703 TATCGGCCTTTCAGCTGGTG 60.108 55.000 15.13 0.00 39.73 4.17 F
2650 3391 3.001939 CACAAAAGGTAGTGTCGTGTTCC 59.998 47.826 0.00 0.00 0.00 3.62 F
4048 5105 2.629051 GACCCCACTGCTTATGTGTAC 58.371 52.381 0.00 0.00 33.92 2.90 F
4541 5605 0.251634 TGTACATCGATGCAAGGCCA 59.748 50.000 25.11 9.75 0.00 5.36 F
5798 6877 0.034896 CTTAATGGGTCCCCGATCCG 59.965 60.000 5.13 0.00 35.15 4.18 F
6157 7236 0.032952 CATATACCCCACGACCACGG 59.967 60.000 0.00 0.00 44.46 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2455 3127 0.839946 ACCAGCTGAAAGGCCGATAT 59.160 50.000 17.39 0.0 0.00 1.63 R
2457 3129 1.377725 CACCAGCTGAAAGGCCGAT 60.378 57.895 17.39 0.0 0.00 4.18 R
2551 3288 2.495270 ACACAAAACTGTGATGTGCCAA 59.505 40.909 19.93 0.0 46.42 4.52 R
3928 4985 0.255890 TGGCAAGCTAATGGGACCTC 59.744 55.000 0.00 0.0 0.00 3.85 R
4111 5168 0.539438 ATCAAACGGGGCTGCTGAAA 60.539 50.000 0.00 0.0 0.00 2.69 R
5712 6791 0.034337 GTGGAAGGTGTTGAGGCGTA 59.966 55.000 0.00 0.0 0.00 4.42 R
6138 7217 0.032952 CCGTGGTCGTGGGGTATATG 59.967 60.000 0.00 0.0 35.01 1.78 R
6660 10070 0.468029 AAATCCATGCCGGGGATCAC 60.468 55.000 10.74 0.0 44.30 3.06 R
8142 12638 0.757188 CGGGTGCTGTAGGGAGAGAT 60.757 60.000 0.00 0.0 0.00 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 117 5.620206 TGTATAGGCAATGTCCCTTATGTG 58.380 41.667 0.00 0.00 33.88 3.21
124 127 7.968405 GCAATGTCCCTTATGTGTACTAAAAAG 59.032 37.037 0.00 0.00 0.00 2.27
144 147 7.648039 AAAAGGTACACCATGTGTTAGAAAA 57.352 32.000 5.06 0.00 45.08 2.29
310 656 0.744874 ATAGTTGCTTCCGCGAGCTA 59.255 50.000 19.04 10.20 43.11 3.32
316 662 1.269102 TGCTTCCGCGAGCTATACTTC 60.269 52.381 19.04 0.00 43.11 3.01
317 663 1.001158 GCTTCCGCGAGCTATACTTCT 60.001 52.381 8.23 0.00 39.57 2.85
320 666 2.294979 TCCGCGAGCTATACTTCTTGA 58.705 47.619 8.23 0.00 0.00 3.02
341 687 6.966534 TGAAAAGGAAGAAAAATCTGAGCT 57.033 33.333 0.00 0.00 0.00 4.09
376 723 7.312657 TCTCATGATAACACAGATTTGCTTC 57.687 36.000 0.00 0.00 0.00 3.86
378 725 5.945191 TCATGATAACACAGATTTGCTTCCA 59.055 36.000 0.00 0.00 0.00 3.53
379 726 5.627499 TGATAACACAGATTTGCTTCCAC 57.373 39.130 0.00 0.00 0.00 4.02
399 746 7.015226 TCCACGAGAAGCATAATTATGTTTG 57.985 36.000 26.28 16.74 37.27 2.93
403 750 9.128107 CACGAGAAGCATAATTATGTTTGTTTT 57.872 29.630 26.28 13.60 37.27 2.43
432 779 9.995003 TTTCCATAAGAAACACATATTTGCTTT 57.005 25.926 0.00 0.00 39.60 3.51
512 864 8.738106 TGTGTTTGATTATCATGAAAGCACATA 58.262 29.630 17.55 5.50 30.47 2.29
534 886 1.226717 GCTTCCGCGAGAGGTACAG 60.227 63.158 8.23 0.00 0.00 2.74
582 934 5.635549 AAAGTTTAAAATCACAACTGCGC 57.364 34.783 0.00 0.00 31.00 6.09
583 935 4.568152 AGTTTAAAATCACAACTGCGCT 57.432 36.364 9.73 0.00 29.36 5.92
599 983 3.330267 TGCGCTTTTGGTCTTTGTTTTT 58.670 36.364 9.73 0.00 0.00 1.94
600 984 4.495422 TGCGCTTTTGGTCTTTGTTTTTA 58.505 34.783 9.73 0.00 0.00 1.52
607 991 9.284594 GCTTTTGGTCTTTGTTTTTATTTTTCC 57.715 29.630 0.00 0.00 0.00 3.13
610 994 9.508642 TTTGGTCTTTGTTTTTATTTTTCCTGT 57.491 25.926 0.00 0.00 0.00 4.00
611 995 9.508642 TTGGTCTTTGTTTTTATTTTTCCTGTT 57.491 25.926 0.00 0.00 0.00 3.16
612 996 9.508642 TGGTCTTTGTTTTTATTTTTCCTGTTT 57.491 25.926 0.00 0.00 0.00 2.83
712 1097 2.538512 CATGGGATCTCGATGCAAGA 57.461 50.000 0.00 0.00 0.00 3.02
719 1104 4.054671 GGATCTCGATGCAAGACTTAAGG 58.945 47.826 7.53 0.00 0.00 2.69
792 1178 1.923204 GACAAAACAACGCACATGCAA 59.077 42.857 4.49 0.00 42.21 4.08
794 1180 0.919981 AAAACAACGCACATGCAACG 59.080 45.000 4.49 0.00 42.21 4.10
796 1182 0.865218 AACAACGCACATGCAACGTG 60.865 50.000 13.76 13.76 40.44 4.49
798 1184 1.010125 AACGCACATGCAACGTGTC 60.010 52.632 17.87 10.93 40.44 3.67
799 1185 1.710103 AACGCACATGCAACGTGTCA 61.710 50.000 17.87 0.00 40.44 3.58
800 1186 1.722163 CGCACATGCAACGTGTCAC 60.722 57.895 17.87 0.00 42.21 3.67
801 1187 1.648720 GCACATGCAACGTGTCACT 59.351 52.632 17.87 0.00 41.59 3.41
802 1188 0.029300 GCACATGCAACGTGTCACTT 59.971 50.000 17.87 0.00 41.59 3.16
803 1189 1.745566 CACATGCAACGTGTCACTTG 58.254 50.000 10.65 6.17 0.00 3.16
804 1190 1.063912 CACATGCAACGTGTCACTTGT 59.936 47.619 10.65 0.00 0.00 3.16
805 1191 1.330521 ACATGCAACGTGTCACTTGTC 59.669 47.619 13.29 8.55 0.00 3.18
806 1192 1.330213 CATGCAACGTGTCACTTGTCA 59.670 47.619 13.29 12.04 0.00 3.58
807 1193 1.006086 TGCAACGTGTCACTTGTCAG 58.994 50.000 13.29 0.00 0.00 3.51
808 1194 0.316196 GCAACGTGTCACTTGTCAGC 60.316 55.000 13.29 5.40 0.00 4.26
809 1195 1.006086 CAACGTGTCACTTGTCAGCA 58.994 50.000 0.65 0.00 0.00 4.41
810 1196 1.004610 CAACGTGTCACTTGTCAGCAG 60.005 52.381 0.65 0.00 0.00 4.24
811 1197 1.154205 ACGTGTCACTTGTCAGCAGC 61.154 55.000 0.65 0.00 0.00 5.25
812 1198 1.566563 GTGTCACTTGTCAGCAGCG 59.433 57.895 0.00 0.00 0.00 5.18
823 1209 1.208614 CAGCAGCGTTTGAGAAGCC 59.791 57.895 0.00 0.00 0.00 4.35
952 1354 3.426426 CGAACTAAACTGACTCGAGAGGG 60.426 52.174 21.68 10.32 37.84 4.30
1025 1427 1.198759 GCCACTTGTCCAGGAGGGTA 61.199 60.000 0.00 0.00 38.11 3.69
1179 1616 3.634397 TCCTAATTCCCTCTTGCACTG 57.366 47.619 0.00 0.00 0.00 3.66
1193 1630 1.214589 CACTGCTTGATGCCTTGCC 59.785 57.895 0.00 0.00 42.00 4.52
1263 1701 7.220030 ACATTATTGATGGTTAGCTCCTGTAG 58.780 38.462 0.00 0.00 40.21 2.74
1264 1702 6.808321 TTATTGATGGTTAGCTCCTGTAGT 57.192 37.500 0.00 0.00 0.00 2.73
1421 1863 2.095604 TTGCCCTTAGTTTTTGGCCT 57.904 45.000 3.32 0.00 43.35 5.19
1422 1864 1.337118 TGCCCTTAGTTTTTGGCCTG 58.663 50.000 3.32 0.00 43.35 4.85
1426 1868 1.482365 CCTTAGTTTTTGGCCTGGGGT 60.482 52.381 3.32 0.00 0.00 4.95
1427 1869 1.618343 CTTAGTTTTTGGCCTGGGGTG 59.382 52.381 3.32 0.00 0.00 4.61
1428 1870 0.558712 TAGTTTTTGGCCTGGGGTGT 59.441 50.000 3.32 0.00 0.00 4.16
1429 1871 0.759060 AGTTTTTGGCCTGGGGTGTC 60.759 55.000 3.32 0.00 0.00 3.67
1430 1872 1.045911 GTTTTTGGCCTGGGGTGTCA 61.046 55.000 3.32 0.00 0.00 3.58
1431 1873 0.758685 TTTTTGGCCTGGGGTGTCAG 60.759 55.000 3.32 0.00 34.70 3.51
1432 1874 3.808218 TTTGGCCTGGGGTGTCAGC 62.808 63.158 3.32 0.00 33.64 4.26
1434 1876 4.284550 GGCCTGGGGTGTCAGCAA 62.285 66.667 4.12 0.00 33.64 3.91
1435 1877 2.203480 GCCTGGGGTGTCAGCAAA 60.203 61.111 4.12 0.00 33.64 3.68
1436 1878 2.564721 GCCTGGGGTGTCAGCAAAC 61.565 63.158 4.12 0.00 33.64 2.93
1439 1881 2.203294 GGGGTGTCAGCAAACCGT 60.203 61.111 4.12 0.00 37.33 4.83
1440 1882 1.826487 GGGGTGTCAGCAAACCGTT 60.826 57.895 4.12 0.00 37.33 4.44
1441 1883 1.358759 GGGTGTCAGCAAACCGTTG 59.641 57.895 4.12 0.00 37.33 4.10
1442 1884 1.098712 GGGTGTCAGCAAACCGTTGA 61.099 55.000 4.12 0.00 36.83 3.18
1443 1885 0.951558 GGTGTCAGCAAACCGTTGAT 59.048 50.000 0.00 0.00 37.18 2.57
1444 1886 1.069227 GGTGTCAGCAAACCGTTGATC 60.069 52.381 0.00 0.00 37.18 2.92
1445 1887 0.865111 TGTCAGCAAACCGTTGATCG 59.135 50.000 0.00 0.00 37.18 3.69
1446 1888 0.452784 GTCAGCAAACCGTTGATCGC 60.453 55.000 0.00 0.00 37.18 4.58
1447 1889 0.882484 TCAGCAAACCGTTGATCGCA 60.882 50.000 0.00 0.00 36.83 5.10
1833 2432 2.946329 TGTTGTGCTGTACGTGGATTTT 59.054 40.909 0.00 0.00 0.00 1.82
2043 2709 0.813821 CTGTGCTCGATGGTGAGAGA 59.186 55.000 0.00 0.00 38.28 3.10
2044 2710 0.813821 TGTGCTCGATGGTGAGAGAG 59.186 55.000 0.00 0.00 38.28 3.20
2045 2711 1.098869 GTGCTCGATGGTGAGAGAGA 58.901 55.000 0.00 0.00 38.28 3.10
2046 2712 1.065401 GTGCTCGATGGTGAGAGAGAG 59.935 57.143 0.00 0.00 38.28 3.20
2054 2720 1.261480 GGTGAGAGAGAGCACTTGGA 58.739 55.000 0.00 0.00 35.43 3.53
2176 2842 6.331369 ACAGGAAAACAACAGGATATTGTG 57.669 37.500 0.00 0.00 40.16 3.33
2190 2857 2.629017 ATTGTGGGGAAAATCAGGCT 57.371 45.000 0.00 0.00 0.00 4.58
2239 2906 1.198637 GCACCATTTCAGCTCAGACAC 59.801 52.381 0.00 0.00 0.00 3.67
2258 2925 8.812972 TCAGACACTGTTTACCTTAAGATATGT 58.187 33.333 3.36 0.00 32.61 2.29
2278 2945 5.861222 TGTATGTGTGCATTCACTAGTTG 57.139 39.130 8.70 0.00 43.49 3.16
2348 3019 7.655732 GTCAGTGGCCACTAAAATTTTATGTTT 59.344 33.333 37.27 7.75 40.20 2.83
2366 3037 5.869753 TGTTTTTCAGAGCTTCATAGAGC 57.130 39.130 0.00 0.00 43.02 4.09
2371 3042 5.611128 TTCAGAGCTTCATAGAGCATTCT 57.389 39.130 0.00 0.00 45.12 2.40
2372 3043 6.721704 TTCAGAGCTTCATAGAGCATTCTA 57.278 37.500 0.00 0.00 45.12 2.10
2379 3050 8.325421 AGCTTCATAGAGCATTCTAATTCATG 57.675 34.615 0.00 0.00 45.12 3.07
2428 3100 2.113860 TCCTGCTATGTCCAAACTGC 57.886 50.000 0.00 0.00 0.00 4.40
2430 3102 2.012673 CCTGCTATGTCCAAACTGCTC 58.987 52.381 0.00 0.00 0.00 4.26
2436 3108 1.024271 TGTCCAAACTGCTCAGCAAC 58.976 50.000 0.00 0.00 38.41 4.17
2475 3147 0.107703 TATCGGCCTTTCAGCTGGTG 60.108 55.000 15.13 0.00 39.73 4.17
2650 3391 3.001939 CACAAAAGGTAGTGTCGTGTTCC 59.998 47.826 0.00 0.00 0.00 3.62
2688 3431 4.041567 TCTTGCTGAACCTAATGTCCTTCA 59.958 41.667 0.00 0.00 0.00 3.02
2724 3467 5.645497 GCACCAAATTTTATTGCCCATAACA 59.355 36.000 4.68 0.00 0.00 2.41
2779 3522 8.567285 TTTCCAACCAATGTACATTTTTGTTT 57.433 26.923 24.86 10.28 0.00 2.83
3211 3957 7.809806 GCACTATATTTGAGATATGTTTTGCCC 59.190 37.037 0.00 0.00 0.00 5.36
3234 3982 6.482973 CCCACTTCAAAATGCACTATGTTTTT 59.517 34.615 0.00 0.00 0.00 1.94
3235 3983 7.655328 CCCACTTCAAAATGCACTATGTTTTTA 59.345 33.333 0.00 0.00 0.00 1.52
3362 4295 6.705381 GCAGCTTGAATAGTCTGATGTCTTAT 59.295 38.462 0.00 0.00 32.88 1.73
3363 4296 7.869937 GCAGCTTGAATAGTCTGATGTCTTATA 59.130 37.037 0.00 0.00 32.88 0.98
3364 4297 9.409312 CAGCTTGAATAGTCTGATGTCTTATAG 57.591 37.037 0.00 0.00 32.88 1.31
3365 4298 8.584157 AGCTTGAATAGTCTGATGTCTTATAGG 58.416 37.037 0.00 0.00 0.00 2.57
3366 4299 8.580720 GCTTGAATAGTCTGATGTCTTATAGGA 58.419 37.037 0.00 0.00 0.00 2.94
3418 4387 8.253810 ACCATATTCTGACGTATCATAGGATTG 58.746 37.037 0.00 0.00 34.89 2.67
3697 4704 4.412796 TCCTTCCTCTAGCATTGACATG 57.587 45.455 0.00 0.00 0.00 3.21
3711 4720 5.673068 GCATTGACATGTCAGAAAGTAGCTG 60.673 44.000 26.48 14.62 41.13 4.24
3732 4741 5.668471 CTGACAGTACCATCTGATGACATT 58.332 41.667 18.92 3.23 38.63 2.71
3874 4931 6.874134 GGCTTTGACAAACTTAGATACTCTGA 59.126 38.462 0.00 0.00 0.00 3.27
3928 4985 9.979578 AGCTAACTCATTTCAGTCAGATAATAG 57.020 33.333 0.00 0.00 0.00 1.73
4048 5105 2.629051 GACCCCACTGCTTATGTGTAC 58.371 52.381 0.00 0.00 33.92 2.90
4174 5231 9.293404 CATCCTCTCATGAATAATACCATGTTT 57.707 33.333 0.00 0.00 40.59 2.83
4177 5234 7.189693 TCTCATGAATAATACCATGTTTCGC 57.810 36.000 0.00 0.00 40.59 4.70
4181 5238 6.117911 TGAATAATACCATGTTTCGCACAG 57.882 37.500 0.00 0.00 39.40 3.66
4226 5284 1.753649 ACTCTCCACCATGATCAGTCG 59.246 52.381 0.09 0.00 0.00 4.18
4229 5287 2.428530 TCTCCACCATGATCAGTCGAAG 59.571 50.000 0.09 0.00 0.00 3.79
4345 5404 5.801947 GCAAAATATAAGTTGAGTGCCACAG 59.198 40.000 0.00 0.00 0.00 3.66
4517 5581 6.302269 AGCTCTACAATAATTGATTGAGGGG 58.698 40.000 0.48 0.00 46.94 4.79
4528 5592 5.708736 TTGATTGAGGGGTATGTGTACAT 57.291 39.130 0.00 2.75 40.22 2.29
4533 5597 3.320826 TGAGGGGTATGTGTACATCGATG 59.679 47.826 23.68 23.68 37.76 3.84
4541 5605 0.251634 TGTACATCGATGCAAGGCCA 59.748 50.000 25.11 9.75 0.00 5.36
4543 5607 0.829990 TACATCGATGCAAGGCCAGA 59.170 50.000 25.11 0.00 0.00 3.86
4729 5793 2.104281 CACATCTCCATCTCCTGCATCA 59.896 50.000 0.00 0.00 0.00 3.07
4736 5800 2.353505 CCATCTCCTGCATCAGATACCG 60.354 54.545 7.12 0.00 32.44 4.02
4788 5856 4.952071 TGGTTTTCATGCAAATCCTTCA 57.048 36.364 0.00 0.00 35.54 3.02
4809 5877 8.709308 CCTTCAGCCTGGCTATATACTAATTAT 58.291 37.037 22.90 0.00 36.40 1.28
4834 5903 4.023792 TGTGATGATCAGAGTTTGTTGCAC 60.024 41.667 0.09 0.00 0.00 4.57
4850 5919 2.862700 CACGATTGCAATGCATCCG 58.137 52.632 18.59 21.71 38.76 4.18
4864 5934 1.460305 ATCCGCTGCAGATACCCCT 60.460 57.895 20.43 0.00 0.00 4.79
4913 5983 7.755591 TCTCCGTACGTCAATATATAATGGTC 58.244 38.462 15.21 0.00 0.00 4.02
4937 6007 3.848301 ATCGGCAGCCACAGCAACA 62.848 57.895 13.30 0.00 43.56 3.33
4939 6009 2.813901 GGCAGCCACAGCAACAAA 59.186 55.556 6.55 0.00 43.56 2.83
4963 6033 2.435805 ACATAACATGGAGATCACCGCT 59.564 45.455 4.63 0.00 33.60 5.52
4970 6040 1.153349 GAGATCACCGCTTCCACCC 60.153 63.158 0.00 0.00 0.00 4.61
4972 6042 1.201429 AGATCACCGCTTCCACCCTT 61.201 55.000 0.00 0.00 0.00 3.95
4973 6043 0.322546 GATCACCGCTTCCACCCTTT 60.323 55.000 0.00 0.00 0.00 3.11
4982 6052 2.238521 CTTCCACCCTTTTGCTGCTTA 58.761 47.619 0.00 0.00 0.00 3.09
4984 6054 2.446435 TCCACCCTTTTGCTGCTTATC 58.554 47.619 0.00 0.00 0.00 1.75
4987 6057 1.098050 CCCTTTTGCTGCTTATCGCT 58.902 50.000 0.00 0.00 40.11 4.93
4996 6066 1.020861 TGCTTATCGCTGGTGTGCTG 61.021 55.000 0.00 0.00 40.11 4.41
5004 6074 2.282391 TGGTGTGCTGGTCCATGC 60.282 61.111 0.00 0.00 0.00 4.06
5017 6087 1.302033 CCATGCCCTGCCTACGATC 60.302 63.158 0.00 0.00 0.00 3.69
5024 6094 1.433471 CTGCCTACGATCTGCACGA 59.567 57.895 1.86 0.00 34.70 4.35
5029 6099 0.654160 CTACGATCTGCACGACGGTA 59.346 55.000 1.86 1.48 34.70 4.02
5030 6100 0.654160 TACGATCTGCACGACGGTAG 59.346 55.000 1.86 0.00 34.70 3.18
5091 6161 1.774639 ACGTACCGTGTGACAATGAC 58.225 50.000 0.00 0.00 39.18 3.06
5092 6162 0.706184 CGTACCGTGTGACAATGACG 59.294 55.000 0.00 0.00 0.00 4.35
5094 6164 4.354155 CCGTGTGACAATGACGGT 57.646 55.556 11.89 0.00 46.11 4.83
5095 6165 1.859398 CCGTGTGACAATGACGGTG 59.141 57.895 11.89 0.00 46.11 4.94
5097 6167 0.506932 CGTGTGACAATGACGGTGTC 59.493 55.000 0.00 0.00 44.67 3.67
5098 6168 0.506932 GTGTGACAATGACGGTGTCG 59.493 55.000 0.00 0.00 46.89 4.35
5125 6204 2.847234 AGCTTCCACCACCGTCCA 60.847 61.111 0.00 0.00 0.00 4.02
5200 6279 2.340328 CCACGGCAAAGGGGCTTAC 61.340 63.158 0.00 0.00 40.61 2.34
5242 6321 3.381983 AGCCTGACGTGGATGCGA 61.382 61.111 0.00 0.00 35.59 5.10
5266 6345 3.123620 CACTGCTTGCCGGAGCTC 61.124 66.667 15.49 4.71 43.11 4.09
5314 6393 1.591703 CCACTCGAGCAGCTACCAA 59.408 57.895 13.61 0.00 0.00 3.67
5326 6405 1.204146 GCTACCAACCTCTCCATCCA 58.796 55.000 0.00 0.00 0.00 3.41
5328 6407 2.173569 GCTACCAACCTCTCCATCCAAT 59.826 50.000 0.00 0.00 0.00 3.16
5333 6412 1.890552 ACCTCTCCATCCAATGAGCT 58.109 50.000 0.00 0.00 0.00 4.09
5338 6417 2.090550 TCTCCATCCAATGAGCTCCCTA 60.091 50.000 12.15 0.00 0.00 3.53
5343 6422 0.475475 CCAATGAGCTCCCTATGCCA 59.525 55.000 12.15 0.00 0.00 4.92
5344 6423 1.133699 CCAATGAGCTCCCTATGCCAA 60.134 52.381 12.15 0.00 0.00 4.52
5426 6505 1.883084 GGCTATGTTGGGCGTCGAG 60.883 63.158 0.00 0.00 0.00 4.04
5435 6514 4.018609 GGCGTCGAGACCATCATG 57.981 61.111 0.00 0.00 0.00 3.07
5462 6541 2.622064 ATCCGACTTTGCCTATCCAC 57.378 50.000 0.00 0.00 0.00 4.02
5463 6542 1.271856 TCCGACTTTGCCTATCCACA 58.728 50.000 0.00 0.00 0.00 4.17
5464 6543 1.626321 TCCGACTTTGCCTATCCACAA 59.374 47.619 0.00 0.00 0.00 3.33
5519 6598 0.745128 TCGACACCAAAGGCACGTTT 60.745 50.000 0.00 0.00 0.00 3.60
5530 6609 2.026014 CACGTTTGCAGGCACACC 59.974 61.111 5.09 0.00 0.00 4.16
5568 6647 1.347050 CTACCTCCCTCATCATGCAGG 59.653 57.143 0.00 0.00 0.00 4.85
5569 6648 1.228184 CCTCCCTCATCATGCAGGC 60.228 63.158 0.00 0.00 0.00 4.85
5570 6649 1.530283 CTCCCTCATCATGCAGGCA 59.470 57.895 0.00 0.00 0.00 4.75
5571 6650 0.535328 CTCCCTCATCATGCAGGCAG 60.535 60.000 0.00 0.00 0.00 4.85
5580 6659 1.493446 TCATGCAGGCAGATCAAGGAT 59.507 47.619 0.00 0.00 0.00 3.24
5592 6671 1.215382 CAAGGATCGTGTCGCCTGA 59.785 57.895 0.00 0.00 31.06 3.86
5606 6685 1.390565 GCCTGACGCTTCTCCTACTA 58.609 55.000 0.00 0.00 0.00 1.82
5613 6692 5.133941 TGACGCTTCTCCTACTATCTGATT 58.866 41.667 0.00 0.00 0.00 2.57
5618 6697 4.199002 TCTCCTACTATCTGATTGGCCA 57.801 45.455 0.00 0.00 0.00 5.36
5626 6705 0.321564 TCTGATTGGCCAAGGTCACG 60.322 55.000 24.94 15.71 0.00 4.35
5627 6706 0.321564 CTGATTGGCCAAGGTCACGA 60.322 55.000 24.94 0.00 0.00 4.35
5696 6775 2.659063 CGCCTCTGGACCACCATCA 61.659 63.158 0.00 0.00 45.87 3.07
5712 6791 3.784763 ACCATCACATCAAGATCCTTCCT 59.215 43.478 0.00 0.00 0.00 3.36
5718 6797 2.160721 TCAAGATCCTTCCTACGCCT 57.839 50.000 0.00 0.00 0.00 5.52
5720 6799 1.757118 CAAGATCCTTCCTACGCCTCA 59.243 52.381 0.00 0.00 0.00 3.86
5727 6806 1.002087 CTTCCTACGCCTCAACACCTT 59.998 52.381 0.00 0.00 0.00 3.50
5769 6848 2.094130 GGCCTACTACGTGAAGCTTCTT 60.094 50.000 26.09 13.37 0.00 2.52
5773 6852 1.070134 ACTACGTGAAGCTTCTTGGCA 59.930 47.619 26.09 4.28 34.17 4.92
5775 6854 2.472695 ACGTGAAGCTTCTTGGCATA 57.527 45.000 26.09 2.03 34.17 3.14
5798 6877 0.034896 CTTAATGGGTCCCCGATCCG 59.965 60.000 5.13 0.00 35.15 4.18
5808 6887 3.872603 CCGATCCGGGGCATCCAA 61.873 66.667 0.00 0.00 44.15 3.53
5811 6890 1.526917 GATCCGGGGCATCCAACAG 60.527 63.158 0.00 0.00 34.36 3.16
5828 6907 1.001974 ACAGACTATGTTTGAGCGGCA 59.998 47.619 1.45 0.00 39.96 5.69
5853 6932 2.895424 CGGGTCAGGAGGGTGCTTT 61.895 63.158 0.00 0.00 0.00 3.51
5859 6938 0.890996 CAGGAGGGTGCTTTGTGGAC 60.891 60.000 0.00 0.00 36.19 4.02
6005 7084 3.090532 GGAGCCCGGGATCTGGTT 61.091 66.667 36.03 6.33 0.00 3.67
6114 7193 3.502595 GGCACCTCTTCTTAAAGGTTGAC 59.497 47.826 0.00 0.00 43.45 3.18
6138 7217 2.300533 GCAGTTGTTGTGCTTTGGC 58.699 52.632 0.00 0.00 37.96 4.52
6154 7233 0.691413 TGGCATATACCCCACGACCA 60.691 55.000 0.00 0.00 0.00 4.02
6157 7236 0.032952 CATATACCCCACGACCACGG 59.967 60.000 0.00 0.00 44.46 4.94
6243 7322 1.451927 CACCATCACCATCCACCCG 60.452 63.158 0.00 0.00 0.00 5.28
6313 7392 4.202441 AGGCTTGTACCATTCATTAGCTG 58.798 43.478 0.00 0.00 0.00 4.24
6319 7398 2.555199 ACCATTCATTAGCTGCTCGTC 58.445 47.619 4.91 0.00 0.00 4.20
6320 7399 2.093500 ACCATTCATTAGCTGCTCGTCA 60.093 45.455 4.91 0.00 0.00 4.35
6365 7444 1.742831 TCATTGTGCGCCATCCTTAAC 59.257 47.619 4.18 0.00 0.00 2.01
6366 7445 1.745087 CATTGTGCGCCATCCTTAACT 59.255 47.619 4.18 0.00 0.00 2.24
6375 7454 3.071874 CCATCCTTAACTGAGTGGCAA 57.928 47.619 0.00 0.00 0.00 4.52
6376 7455 3.420893 CCATCCTTAACTGAGTGGCAAA 58.579 45.455 0.00 0.00 0.00 3.68
6380 7459 4.326826 TCCTTAACTGAGTGGCAAATCAG 58.673 43.478 16.89 16.89 46.76 2.90
6422 7502 3.498774 ATTCATGCATAGTGTCCTCCC 57.501 47.619 0.00 0.00 0.00 4.30
6423 7503 2.180946 TCATGCATAGTGTCCTCCCT 57.819 50.000 0.00 0.00 0.00 4.20
6457 9861 7.378966 TGAGTTGTAGATTCAACCTAGACTTG 58.621 38.462 6.04 0.00 45.90 3.16
6468 9872 6.878317 TCAACCTAGACTTGGTTCATATCTG 58.122 40.000 17.14 6.81 45.05 2.90
6525 9932 5.163754 GGATCCGAAAATAACTCTGGTGTTG 60.164 44.000 0.00 0.00 0.00 3.33
6526 9933 4.069304 TCCGAAAATAACTCTGGTGTTGG 58.931 43.478 0.00 0.00 0.00 3.77
6546 9953 1.682087 GGAACCTCTTGTACATGGGCC 60.682 57.143 8.74 0.00 0.00 5.80
6571 9980 1.734465 CCTTCGACCAGCAGATTCAAC 59.266 52.381 0.00 0.00 0.00 3.18
6646 10056 4.373156 GCCAGTAGGATGGGTTCATATT 57.627 45.455 0.00 0.00 40.97 1.28
6660 10070 6.491062 TGGGTTCATATTTCATTATCTGGCAG 59.509 38.462 8.58 8.58 0.00 4.85
6671 10081 4.864334 CTGGCAGTGATCCCCGGC 62.864 72.222 6.28 0.00 0.00 6.13
6691 10101 6.036626 CCCGGCATGGATTTTGTAAATTAAAC 59.963 38.462 0.00 0.00 42.00 2.01
6721 10294 9.847224 ATGGTATGATACGTTTATTTTCCTTCT 57.153 29.630 0.00 0.00 0.00 2.85
6791 10370 8.845227 TGACATAATATGCATTTATCGTTTGGT 58.155 29.630 3.54 2.87 0.00 3.67
6842 10421 2.993899 ACATGTTGGACGTCTCGAATTC 59.006 45.455 16.46 0.00 0.00 2.17
6887 10517 7.038088 AGGCCACTGATTGAATAATTTTCCTTT 60.038 33.333 5.01 0.00 0.00 3.11
6911 10541 9.832445 TTTGACTTTGACAAACTTAGATACTCT 57.168 29.630 0.00 0.00 33.25 3.24
6919 10549 7.819415 TGACAAACTTAGATACTCTGTTGATGG 59.181 37.037 0.00 0.00 0.00 3.51
6920 10550 7.680730 ACAAACTTAGATACTCTGTTGATGGT 58.319 34.615 0.00 0.00 0.00 3.55
6921 10551 7.604164 ACAAACTTAGATACTCTGTTGATGGTG 59.396 37.037 0.00 0.00 0.00 4.17
6922 10552 6.859112 ACTTAGATACTCTGTTGATGGTGT 57.141 37.500 0.00 0.00 0.00 4.16
6923 10553 7.246171 ACTTAGATACTCTGTTGATGGTGTT 57.754 36.000 0.00 0.00 0.00 3.32
6924 10554 8.362464 ACTTAGATACTCTGTTGATGGTGTTA 57.638 34.615 0.00 0.00 0.00 2.41
6927 10557 7.907214 AGATACTCTGTTGATGGTGTTAAAC 57.093 36.000 0.00 0.00 0.00 2.01
6929 10559 7.936847 AGATACTCTGTTGATGGTGTTAAACAA 59.063 33.333 0.00 0.00 32.50 2.83
6930 10560 6.767524 ACTCTGTTGATGGTGTTAAACAAA 57.232 33.333 0.00 0.00 32.50 2.83
6931 10561 7.164230 ACTCTGTTGATGGTGTTAAACAAAA 57.836 32.000 0.00 0.00 32.50 2.44
6932 10562 7.607250 ACTCTGTTGATGGTGTTAAACAAAAA 58.393 30.769 0.00 0.00 32.50 1.94
6933 10563 7.759433 ACTCTGTTGATGGTGTTAAACAAAAAG 59.241 33.333 0.00 0.00 32.50 2.27
6934 10564 7.831753 TCTGTTGATGGTGTTAAACAAAAAGA 58.168 30.769 0.00 0.00 32.50 2.52
6935 10565 8.474025 TCTGTTGATGGTGTTAAACAAAAAGAT 58.526 29.630 0.00 0.00 32.50 2.40
6936 10566 9.743057 CTGTTGATGGTGTTAAACAAAAAGATA 57.257 29.630 0.00 0.00 32.50 1.98
6937 10567 9.522804 TGTTGATGGTGTTAAACAAAAAGATAC 57.477 29.630 0.00 0.00 29.96 2.24
6939 10569 9.959749 TTGATGGTGTTAAACAAAAAGATACTC 57.040 29.630 0.00 0.00 0.00 2.59
6940 10570 9.349713 TGATGGTGTTAAACAAAAAGATACTCT 57.650 29.630 0.00 0.00 0.00 3.24
7017 10647 2.750141 ATCCCATTCATGAGCTTGCT 57.250 45.000 0.00 0.00 0.00 3.91
7130 10764 0.609131 AAGCGTATGGCCTTTGCAGT 60.609 50.000 3.32 0.00 45.17 4.40
7131 10765 0.251916 AGCGTATGGCCTTTGCAGTA 59.748 50.000 3.32 0.00 45.17 2.74
7132 10766 0.377203 GCGTATGGCCTTTGCAGTAC 59.623 55.000 3.32 0.00 40.13 2.73
7133 10767 1.732941 CGTATGGCCTTTGCAGTACA 58.267 50.000 3.32 0.00 40.13 2.90
7182 10826 5.705902 TGTGCAGAGAAACATTCATTCATG 58.294 37.500 0.00 0.00 0.00 3.07
7309 10962 0.896940 AGCAGCCAACCAACCATCTG 60.897 55.000 0.00 0.00 0.00 2.90
7368 11161 9.981460 ATTATTTCTATGTTTTCCTTGAGGAGT 57.019 29.630 0.00 0.00 46.36 3.85
7471 11275 8.964476 ATACACACTAATGACCCTGATTTAAG 57.036 34.615 0.00 0.00 0.00 1.85
7516 11325 2.271944 ACTCAGGCCCTGTTTGTTAC 57.728 50.000 11.27 0.00 32.61 2.50
7549 11358 3.636231 CCCCGTTCCTCACCAGCA 61.636 66.667 0.00 0.00 0.00 4.41
7583 11392 6.265196 TCATTTCCAGGGAATGCATAATGTAC 59.735 38.462 15.27 0.00 33.79 2.90
7696 11519 0.455464 CAGTACGAACGCCGACATGA 60.455 55.000 0.00 0.00 41.76 3.07
7761 11584 0.524816 GTTGCCGCTGAAGCATCATG 60.525 55.000 2.79 0.00 40.59 3.07
7839 12329 7.353525 TGGTACATCCTTTTCATCCATGTAAT 58.646 34.615 0.00 0.00 32.97 1.89
7846 12336 8.918202 TCCTTTTCATCCATGTAATATACACC 57.082 34.615 0.00 0.00 42.23 4.16
7847 12337 7.942341 TCCTTTTCATCCATGTAATATACACCC 59.058 37.037 0.00 0.00 42.23 4.61
7848 12338 7.944554 CCTTTTCATCCATGTAATATACACCCT 59.055 37.037 0.00 0.00 42.23 4.34
7849 12339 8.918202 TTTTCATCCATGTAATATACACCCTC 57.082 34.615 0.00 0.00 42.23 4.30
7862 12352 7.750947 ATATACACCCTCCATTCCCTTATAC 57.249 40.000 0.00 0.00 0.00 1.47
7865 12355 4.542525 ACACCCTCCATTCCCTTATACAAA 59.457 41.667 0.00 0.00 0.00 2.83
7871 12361 4.229582 TCCATTCCCTTATACAAAGCCACT 59.770 41.667 0.00 0.00 0.00 4.00
7872 12362 4.956075 CCATTCCCTTATACAAAGCCACTT 59.044 41.667 0.00 0.00 0.00 3.16
7975 12465 4.401022 AGTTCTTTGAGATGTGCATCCAA 58.599 39.130 8.41 9.39 38.58 3.53
7977 12467 4.976224 TCTTTGAGATGTGCATCCAATG 57.024 40.909 8.41 12.67 38.58 2.82
7983 12473 4.818005 TGAGATGTGCATCCAATGACATAC 59.182 41.667 8.41 0.00 38.58 2.39
7986 12476 5.530171 AGATGTGCATCCAATGACATACTTC 59.470 40.000 8.41 0.00 38.58 3.01
7989 12479 5.711506 TGTGCATCCAATGACATACTTCTTT 59.288 36.000 0.00 0.00 0.00 2.52
7990 12480 6.032094 GTGCATCCAATGACATACTTCTTTG 58.968 40.000 0.00 0.00 32.82 2.77
7991 12481 5.711506 TGCATCCAATGACATACTTCTTTGT 59.288 36.000 0.00 0.00 31.69 2.83
7992 12482 6.032094 GCATCCAATGACATACTTCTTTGTG 58.968 40.000 0.00 0.00 31.69 3.33
7993 12483 6.127925 GCATCCAATGACATACTTCTTTGTGA 60.128 38.462 0.00 0.00 31.69 3.58
7994 12484 6.801539 TCCAATGACATACTTCTTTGTGAC 57.198 37.500 0.00 0.00 31.69 3.67
8013 12509 7.667043 TGTGACATATACCTCACTTTTTGTC 57.333 36.000 11.22 0.00 38.12 3.18
8015 12511 5.872617 TGACATATACCTCACTTTTTGTCGG 59.127 40.000 0.00 0.00 36.03 4.79
8019 12515 8.044908 ACATATACCTCACTTTTTGTCGGTAAT 58.955 33.333 0.00 0.00 36.55 1.89
8062 12558 8.253113 AGATATAAAAACATGAAGTTGCCTTGG 58.747 33.333 0.00 0.00 41.19 3.61
8101 12597 7.360269 GGAGTAACATTTGTTTTGCAATGGATG 60.360 37.037 0.00 3.83 39.31 3.51
8106 12602 4.637387 TTGTTTTGCAATGGATGGGAAT 57.363 36.364 0.00 0.00 31.07 3.01
8134 12630 9.877222 TTCTCCCAGTACTATATGTTTATCTCA 57.123 33.333 0.00 0.00 0.00 3.27
8159 12655 3.451178 TGTTTATCTCTCCCTACAGCACC 59.549 47.826 0.00 0.00 0.00 5.01
8160 12656 2.383442 TATCTCTCCCTACAGCACCC 57.617 55.000 0.00 0.00 0.00 4.61
8177 12673 1.157870 CCCGCCTTACTAATGCGTGG 61.158 60.000 14.78 12.04 46.44 4.94
8222 12733 0.893270 CCATTCAGCAACCCCGTTGA 60.893 55.000 8.65 0.00 45.28 3.18
8223 12734 1.176527 CATTCAGCAACCCCGTTGAT 58.823 50.000 8.65 0.00 45.28 2.57
8225 12736 0.958091 TTCAGCAACCCCGTTGATTG 59.042 50.000 8.65 6.04 45.28 2.67
8238 12749 3.761752 CCGTTGATTGGGATAAACAAGGT 59.238 43.478 0.00 0.00 0.00 3.50
8243 12754 1.917872 TGGGATAAACAAGGTGGCAC 58.082 50.000 9.70 9.70 0.00 5.01
8246 12757 2.290960 GGGATAAACAAGGTGGCACTCT 60.291 50.000 18.45 10.12 0.00 3.24
8247 12758 3.010420 GGATAAACAAGGTGGCACTCTC 58.990 50.000 18.45 0.33 0.00 3.20
8248 12759 3.307762 GGATAAACAAGGTGGCACTCTCT 60.308 47.826 18.45 3.06 0.00 3.10
8250 12761 1.131638 AACAAGGTGGCACTCTCTCA 58.868 50.000 18.45 0.00 0.00 3.27
8257 13712 5.957771 AGGTGGCACTCTCTCATAAATAA 57.042 39.130 18.45 0.00 0.00 1.40
8260 13715 8.212259 AGGTGGCACTCTCTCATAAATAATAT 57.788 34.615 18.45 0.00 0.00 1.28
8292 13759 8.624701 TCACACATAATAAGCTAAACTCGTAC 57.375 34.615 0.00 0.00 0.00 3.67
8297 13764 8.068977 ACATAATAAGCTAAACTCGTACGAGAG 58.931 37.037 42.94 31.76 44.53 3.20
8304 13771 4.629251 AAACTCGTACGAGAGGTATTCC 57.371 45.455 42.94 0.00 44.53 3.01
8311 13778 1.344087 ACGAGAGGTATTCCCCACCAT 60.344 52.381 0.00 0.00 38.62 3.55
8315 13782 2.982488 AGAGGTATTCCCCACCATGATC 59.018 50.000 0.00 0.00 38.62 2.92
8324 13791 2.636830 CCCACCATGATCAGACTGAAC 58.363 52.381 9.70 7.57 0.00 3.18
8328 13798 4.763793 CCACCATGATCAGACTGAACTTTT 59.236 41.667 9.70 0.00 0.00 2.27
8329 13799 5.335426 CCACCATGATCAGACTGAACTTTTG 60.335 44.000 9.70 6.58 0.00 2.44
8330 14459 5.471116 CACCATGATCAGACTGAACTTTTGA 59.529 40.000 9.70 0.00 0.00 2.69
8333 14462 7.232127 ACCATGATCAGACTGAACTTTTGATTT 59.768 33.333 9.70 0.00 0.00 2.17
8335 14464 9.125906 CATGATCAGACTGAACTTTTGATTTTC 57.874 33.333 9.70 0.00 0.00 2.29
8352 14481 9.703892 TTTGATTTTCTTTTCAAGTCAACTTCA 57.296 25.926 0.00 0.00 33.68 3.02
8357 14486 8.742554 TTTCTTTTCAAGTCAACTTCAAGTTC 57.257 30.769 0.00 0.00 36.03 3.01
8358 14487 6.852664 TCTTTTCAAGTCAACTTCAAGTTCC 58.147 36.000 0.00 0.00 36.03 3.62
8359 14488 4.875544 TTCAAGTCAACTTCAAGTTCCG 57.124 40.909 0.00 0.00 36.03 4.30
8360 14489 2.612212 TCAAGTCAACTTCAAGTTCCGC 59.388 45.455 0.00 0.00 36.03 5.54
8362 14491 1.141053 AGTCAACTTCAAGTTCCGCCT 59.859 47.619 0.00 0.00 36.03 5.52
8363 14492 1.947456 GTCAACTTCAAGTTCCGCCTT 59.053 47.619 0.00 0.00 36.03 4.35
8365 14494 3.751698 GTCAACTTCAAGTTCCGCCTTAT 59.248 43.478 0.00 0.00 36.03 1.73
8369 14498 6.657541 TCAACTTCAAGTTCCGCCTTATAAAT 59.342 34.615 0.00 0.00 36.03 1.40
8371 14500 7.462571 ACTTCAAGTTCCGCCTTATAAATTT 57.537 32.000 0.00 0.00 0.00 1.82
8372 14501 7.892609 ACTTCAAGTTCCGCCTTATAAATTTT 58.107 30.769 0.00 0.00 0.00 1.82
8373 14502 9.016438 ACTTCAAGTTCCGCCTTATAAATTTTA 57.984 29.630 0.00 0.00 0.00 1.52
8374 14503 9.849166 CTTCAAGTTCCGCCTTATAAATTTTAA 57.151 29.630 0.00 0.00 0.00 1.52
8376 14505 9.849166 TCAAGTTCCGCCTTATAAATTTTAAAG 57.151 29.630 0.00 0.76 0.00 1.85
8377 14506 9.634163 CAAGTTCCGCCTTATAAATTTTAAAGT 57.366 29.630 0.00 0.00 0.00 2.66
8378 14507 9.634163 AAGTTCCGCCTTATAAATTTTAAAGTG 57.366 29.630 0.00 0.00 0.00 3.16
8379 14508 8.248253 AGTTCCGCCTTATAAATTTTAAAGTGG 58.752 33.333 0.00 5.70 0.00 4.00
8380 14509 7.706100 TCCGCCTTATAAATTTTAAAGTGGT 57.294 32.000 0.00 0.00 0.00 4.16
8381 14510 7.540299 TCCGCCTTATAAATTTTAAAGTGGTG 58.460 34.615 0.00 0.00 0.00 4.17
8382 14511 7.177041 TCCGCCTTATAAATTTTAAAGTGGTGT 59.823 33.333 0.00 0.00 0.00 4.16
8383 14512 8.460428 CCGCCTTATAAATTTTAAAGTGGTGTA 58.540 33.333 0.00 0.00 0.00 2.90
8384 14513 9.498307 CGCCTTATAAATTTTAAAGTGGTGTAG 57.502 33.333 0.00 0.00 0.00 2.74
8391 14520 5.744666 TTTTAAAGTGGTGTAGAGTGTGC 57.255 39.130 0.00 0.00 0.00 4.57
8392 14521 2.256117 AAAGTGGTGTAGAGTGTGCC 57.744 50.000 0.00 0.00 0.00 5.01
8393 14522 1.128200 AAGTGGTGTAGAGTGTGCCA 58.872 50.000 0.00 0.00 0.00 4.92
8394 14523 1.352083 AGTGGTGTAGAGTGTGCCAT 58.648 50.000 0.00 0.00 0.00 4.40
8395 14524 1.276421 AGTGGTGTAGAGTGTGCCATC 59.724 52.381 0.00 0.00 0.00 3.51
8396 14525 1.276421 GTGGTGTAGAGTGTGCCATCT 59.724 52.381 0.00 0.00 0.00 2.90
8397 14526 1.977854 TGGTGTAGAGTGTGCCATCTT 59.022 47.619 0.00 0.00 0.00 2.40
8398 14527 2.371841 TGGTGTAGAGTGTGCCATCTTT 59.628 45.455 0.00 0.00 0.00 2.52
8399 14528 3.580895 TGGTGTAGAGTGTGCCATCTTTA 59.419 43.478 0.00 0.00 0.00 1.85
8400 14529 3.933332 GGTGTAGAGTGTGCCATCTTTAC 59.067 47.826 0.00 0.00 0.00 2.01
8401 14530 4.322801 GGTGTAGAGTGTGCCATCTTTACT 60.323 45.833 0.00 0.00 0.00 2.24
8402 14531 5.105473 GGTGTAGAGTGTGCCATCTTTACTA 60.105 44.000 0.00 0.00 0.00 1.82
8403 14532 6.407074 GGTGTAGAGTGTGCCATCTTTACTAT 60.407 42.308 0.00 0.00 0.00 2.12
8404 14533 7.042335 GTGTAGAGTGTGCCATCTTTACTATT 58.958 38.462 0.00 0.00 0.00 1.73
8405 14534 7.549488 GTGTAGAGTGTGCCATCTTTACTATTT 59.451 37.037 0.00 0.00 0.00 1.40
8406 14535 8.755028 TGTAGAGTGTGCCATCTTTACTATTTA 58.245 33.333 0.00 0.00 0.00 1.40
8407 14536 9.250624 GTAGAGTGTGCCATCTTTACTATTTAG 57.749 37.037 0.00 0.00 0.00 1.85
8408 14537 6.763610 AGAGTGTGCCATCTTTACTATTTAGC 59.236 38.462 0.00 0.00 0.00 3.09
8409 14538 6.414732 AGTGTGCCATCTTTACTATTTAGCA 58.585 36.000 0.00 0.00 0.00 3.49
8410 14539 6.884295 AGTGTGCCATCTTTACTATTTAGCAA 59.116 34.615 0.00 0.00 0.00 3.91
8411 14540 7.393234 AGTGTGCCATCTTTACTATTTAGCAAA 59.607 33.333 0.00 0.00 0.00 3.68
8412 14541 7.484959 GTGTGCCATCTTTACTATTTAGCAAAC 59.515 37.037 0.00 0.00 0.00 2.93
8413 14542 7.393234 TGTGCCATCTTTACTATTTAGCAAACT 59.607 33.333 0.00 0.00 0.00 2.66
8414 14543 8.889717 GTGCCATCTTTACTATTTAGCAAACTA 58.110 33.333 0.00 0.00 0.00 2.24
8415 14544 9.109393 TGCCATCTTTACTATTTAGCAAACTAG 57.891 33.333 0.00 0.00 0.00 2.57
8416 14545 8.070769 GCCATCTTTACTATTTAGCAAACTAGC 58.929 37.037 0.00 0.00 0.00 3.42
8417 14546 9.109393 CCATCTTTACTATTTAGCAAACTAGCA 57.891 33.333 0.00 0.00 36.85 3.49
8432 14561 9.231297 AGCAAACTAGCAAAATATAAGTTGAGA 57.769 29.630 3.56 0.00 36.85 3.27
8433 14562 9.495754 GCAAACTAGCAAAATATAAGTTGAGAG 57.504 33.333 3.56 2.54 31.09 3.20
8434 14563 9.495754 CAAACTAGCAAAATATAAGTTGAGAGC 57.504 33.333 3.56 0.00 31.09 4.09
8435 14564 7.793927 ACTAGCAAAATATAAGTTGAGAGCC 57.206 36.000 3.56 0.00 0.00 4.70
8436 14565 7.338710 ACTAGCAAAATATAAGTTGAGAGCCA 58.661 34.615 3.56 0.00 0.00 4.75
8437 14566 6.442513 AGCAAAATATAAGTTGAGAGCCAC 57.557 37.500 3.56 0.00 0.00 5.01
8438 14567 5.945784 AGCAAAATATAAGTTGAGAGCCACA 59.054 36.000 3.56 0.00 0.00 4.17
8439 14568 6.434028 AGCAAAATATAAGTTGAGAGCCACAA 59.566 34.615 3.56 0.00 0.00 3.33
8440 14569 7.039784 AGCAAAATATAAGTTGAGAGCCACAAA 60.040 33.333 3.56 0.00 0.00 2.83
8441 14570 7.598493 GCAAAATATAAGTTGAGAGCCACAAAA 59.402 33.333 3.56 0.00 0.00 2.44
8442 14571 9.474920 CAAAATATAAGTTGAGAGCCACAAAAA 57.525 29.630 0.00 0.00 0.00 1.94
8813 16780 0.322456 CCCTCTTCCATCCACGCAAA 60.322 55.000 0.00 0.00 0.00 3.68
8903 16870 3.755404 CGAGAACGCCGACTTCAG 58.245 61.111 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
114 117 7.500720 AACACATGGTGTACCTTTTTAGTAC 57.499 36.000 2.00 0.00 46.79 2.73
124 127 7.238571 CGTATTTTTCTAACACATGGTGTACC 58.761 38.462 2.00 0.00 46.79 3.34
281 627 4.962693 CGGAAGCAACTATGTTCTTCTTG 58.037 43.478 15.17 9.31 36.22 3.02
316 662 7.432059 AGCTCAGATTTTTCTTCCTTTTCAAG 58.568 34.615 0.00 0.00 0.00 3.02
317 663 7.352079 AGCTCAGATTTTTCTTCCTTTTCAA 57.648 32.000 0.00 0.00 0.00 2.69
320 666 8.864087 ACATAAGCTCAGATTTTTCTTCCTTTT 58.136 29.630 0.00 0.00 0.00 2.27
355 702 6.032094 GTGGAAGCAAATCTGTGTTATCATG 58.968 40.000 0.00 0.00 0.00 3.07
356 703 5.163723 CGTGGAAGCAAATCTGTGTTATCAT 60.164 40.000 0.00 0.00 0.00 2.45
359 706 4.323417 TCGTGGAAGCAAATCTGTGTTAT 58.677 39.130 0.00 0.00 0.00 1.89
376 723 6.785191 ACAAACATAATTATGCTTCTCGTGG 58.215 36.000 22.66 8.54 37.19 4.94
378 725 9.691362 AAAAACAAACATAATTATGCTTCTCGT 57.309 25.926 22.66 10.28 37.19 4.18
379 726 9.941991 CAAAAACAAACATAATTATGCTTCTCG 57.058 29.630 22.66 9.74 37.19 4.04
560 912 5.348164 AGCGCAGTTGTGATTTTAAACTTT 58.652 33.333 11.47 0.00 31.88 2.66
561 913 4.932146 AGCGCAGTTGTGATTTTAAACTT 58.068 34.783 11.47 0.00 31.88 2.66
563 915 5.635549 AAAGCGCAGTTGTGATTTTAAAC 57.364 34.783 11.47 0.00 40.67 2.01
571 923 0.380378 GACCAAAAGCGCAGTTGTGA 59.620 50.000 11.47 0.00 0.00 3.58
572 924 0.381801 AGACCAAAAGCGCAGTTGTG 59.618 50.000 11.47 9.65 0.00 3.33
573 925 1.102978 AAGACCAAAAGCGCAGTTGT 58.897 45.000 11.47 0.00 0.00 3.32
574 926 1.854126 CAAAGACCAAAAGCGCAGTTG 59.146 47.619 11.47 13.23 0.00 3.16
576 928 1.102978 ACAAAGACCAAAAGCGCAGT 58.897 45.000 11.47 0.00 0.00 4.40
577 929 2.208326 AACAAAGACCAAAAGCGCAG 57.792 45.000 11.47 0.00 0.00 5.18
579 931 5.651172 ATAAAAACAAAGACCAAAAGCGC 57.349 34.783 0.00 0.00 0.00 5.92
580 932 8.888332 AAAAATAAAAACAAAGACCAAAAGCG 57.112 26.923 0.00 0.00 0.00 4.68
581 933 9.284594 GGAAAAATAAAAACAAAGACCAAAAGC 57.715 29.630 0.00 0.00 0.00 3.51
679 1064 6.266131 AGATCCCATGCTAATAGGTTTCAA 57.734 37.500 0.00 0.00 0.00 2.69
753 1138 5.013568 TGTCGTAACAGAAGAGTTTTCCA 57.986 39.130 0.00 0.00 33.07 3.53
754 1139 5.978934 TTGTCGTAACAGAAGAGTTTTCC 57.021 39.130 0.00 0.00 36.57 3.13
760 1145 5.188194 CGTTGTTTTGTCGTAACAGAAGAG 58.812 41.667 0.00 0.00 36.89 2.85
761 1146 4.492895 GCGTTGTTTTGTCGTAACAGAAGA 60.493 41.667 0.00 0.00 36.89 2.87
767 1153 2.771689 TGTGCGTTGTTTTGTCGTAAC 58.228 42.857 0.00 0.00 0.00 2.50
792 1178 1.154205 GCTGCTGACAAGTGACACGT 61.154 55.000 0.00 0.00 0.00 4.49
794 1180 1.154205 ACGCTGCTGACAAGTGACAC 61.154 55.000 0.00 0.00 0.00 3.67
796 1182 0.657840 AAACGCTGCTGACAAGTGAC 59.342 50.000 0.00 0.00 0.00 3.67
798 1184 0.657312 TCAAACGCTGCTGACAAGTG 59.343 50.000 0.00 0.00 0.00 3.16
799 1185 0.940126 CTCAAACGCTGCTGACAAGT 59.060 50.000 0.00 0.00 0.00 3.16
800 1186 1.220529 TCTCAAACGCTGCTGACAAG 58.779 50.000 0.00 0.00 0.00 3.16
801 1187 1.599071 CTTCTCAAACGCTGCTGACAA 59.401 47.619 0.00 0.00 0.00 3.18
802 1188 1.220529 CTTCTCAAACGCTGCTGACA 58.779 50.000 0.00 0.00 0.00 3.58
803 1189 0.110464 GCTTCTCAAACGCTGCTGAC 60.110 55.000 0.00 0.00 0.00 3.51
804 1190 1.230635 GGCTTCTCAAACGCTGCTGA 61.231 55.000 0.00 0.00 0.00 4.26
805 1191 1.208614 GGCTTCTCAAACGCTGCTG 59.791 57.895 0.00 0.00 0.00 4.41
806 1192 2.320587 CGGCTTCTCAAACGCTGCT 61.321 57.895 0.00 0.00 0.00 4.24
807 1193 2.174349 CGGCTTCTCAAACGCTGC 59.826 61.111 0.00 0.00 0.00 5.25
808 1194 1.630244 CTCCGGCTTCTCAAACGCTG 61.630 60.000 0.00 0.00 0.00 5.18
809 1195 1.374758 CTCCGGCTTCTCAAACGCT 60.375 57.895 0.00 0.00 0.00 5.07
810 1196 2.391389 CCTCCGGCTTCTCAAACGC 61.391 63.158 0.00 0.00 0.00 4.84
811 1197 0.108138 ATCCTCCGGCTTCTCAAACG 60.108 55.000 0.00 0.00 0.00 3.60
812 1198 1.066143 TCATCCTCCGGCTTCTCAAAC 60.066 52.381 0.00 0.00 0.00 2.93
823 1209 4.202245 TCAGGTTAAAGTTCATCCTCCG 57.798 45.455 0.00 0.00 0.00 4.63
828 1214 5.332707 GCCGAAATCAGGTTAAAGTTCATC 58.667 41.667 0.00 0.00 0.00 2.92
962 1364 0.892358 GGAAGGGGTTTGGTTCGTCC 60.892 60.000 0.00 0.00 0.00 4.79
1179 1616 1.589716 AAGTCGGCAAGGCATCAAGC 61.590 55.000 0.00 0.00 44.65 4.01
1417 1859 3.808218 TTTGCTGACACCCCAGGCC 62.808 63.158 0.00 0.00 34.82 5.19
1419 1861 1.903404 GGTTTGCTGACACCCCAGG 60.903 63.158 0.00 0.00 34.82 4.45
1421 1863 2.203280 CGGTTTGCTGACACCCCA 60.203 61.111 0.00 0.00 0.00 4.96
1422 1864 1.826487 AACGGTTTGCTGACACCCC 60.826 57.895 0.00 0.00 0.00 4.95
1426 1868 0.865111 CGATCAACGGTTTGCTGACA 59.135 50.000 0.00 0.00 38.46 3.58
1427 1869 0.452784 GCGATCAACGGTTTGCTGAC 60.453 55.000 0.00 0.00 42.83 3.51
1428 1870 0.882484 TGCGATCAACGGTTTGCTGA 60.882 50.000 0.00 0.00 42.83 4.26
1429 1871 0.725784 GTGCGATCAACGGTTTGCTG 60.726 55.000 0.00 0.00 42.83 4.41
1430 1872 1.574428 GTGCGATCAACGGTTTGCT 59.426 52.632 0.00 0.00 42.83 3.91
1431 1873 1.442017 GGTGCGATCAACGGTTTGC 60.442 57.895 0.00 0.00 42.83 3.68
1432 1874 2.857934 ATCGGTGCGATCAACGGTTTG 61.858 52.381 2.81 0.00 45.91 2.93
1433 1875 0.672401 ATCGGTGCGATCAACGGTTT 60.672 50.000 2.81 0.00 45.91 3.27
1434 1876 1.079405 ATCGGTGCGATCAACGGTT 60.079 52.632 2.81 0.00 45.91 4.44
1439 1881 0.179111 GACTCCATCGGTGCGATCAA 60.179 55.000 0.00 0.00 45.19 2.57
1440 1882 1.437573 GACTCCATCGGTGCGATCA 59.562 57.895 0.00 0.00 45.19 2.92
1441 1883 1.300233 GGACTCCATCGGTGCGATC 60.300 63.158 0.00 0.00 45.19 3.69
1444 1886 3.822192 TCGGACTCCATCGGTGCG 61.822 66.667 0.00 0.00 46.79 5.34
1445 1887 2.202756 GTCGGACTCCATCGGTGC 60.203 66.667 0.00 0.00 0.00 5.01
1446 1888 2.102357 CGTCGGACTCCATCGGTG 59.898 66.667 6.57 0.00 0.00 4.94
1447 1889 3.138798 CCGTCGGACTCCATCGGT 61.139 66.667 4.91 0.00 35.72 4.69
1517 1959 4.069232 CTTCAGCCGTCCTGCCGA 62.069 66.667 0.00 0.00 41.50 5.54
1833 2432 1.743958 GTGTAGCTCTCGTCCAGCTTA 59.256 52.381 10.10 0.16 45.34 3.09
1890 2489 1.168714 GGGTCACCTTGAGATTGTGC 58.831 55.000 0.00 0.00 0.00 4.57
2043 2709 5.244626 AGCAACAATTTTATCCAAGTGCTCT 59.755 36.000 0.00 0.00 0.00 4.09
2044 2710 5.473039 AGCAACAATTTTATCCAAGTGCTC 58.527 37.500 0.00 0.00 0.00 4.26
2045 2711 5.473066 AGCAACAATTTTATCCAAGTGCT 57.527 34.783 0.00 0.00 0.00 4.40
2046 2712 5.695816 TCAAGCAACAATTTTATCCAAGTGC 59.304 36.000 0.00 0.00 0.00 4.40
2176 2842 1.685148 CTGCTAGCCTGATTTTCCCC 58.315 55.000 13.29 0.00 0.00 4.81
2190 2857 4.388485 TCTTTCATGACAACTTGCTGCTA 58.612 39.130 0.00 0.00 0.00 3.49
2278 2945 7.750903 GCATATTTGAGTTCTAAACTGAACCAC 59.249 37.037 0.00 1.06 45.25 4.16
2321 2988 4.600692 AAAATTTTAGTGGCCACTGACC 57.399 40.909 42.35 15.63 42.52 4.02
2323 2990 6.909550 ACATAAAATTTTAGTGGCCACTGA 57.090 33.333 42.35 34.43 42.52 3.41
2348 3019 5.987098 AGAATGCTCTATGAAGCTCTGAAA 58.013 37.500 0.00 0.00 42.94 2.69
2355 3026 8.229137 GTCATGAATTAGAATGCTCTATGAAGC 58.771 37.037 0.00 0.00 42.82 3.86
2371 3042 9.944376 GCTCAGGTATATAAAGGTCATGAATTA 57.056 33.333 0.00 0.00 0.00 1.40
2372 3043 8.439971 TGCTCAGGTATATAAAGGTCATGAATT 58.560 33.333 0.00 0.00 0.00 2.17
2379 3050 4.991687 GTGCTGCTCAGGTATATAAAGGTC 59.008 45.833 0.00 0.00 0.00 3.85
2450 3122 1.871080 CTGAAAGGCCGATATCGCTT 58.129 50.000 19.78 14.79 38.18 4.68
2454 3126 1.202698 ACCAGCTGAAAGGCCGATATC 60.203 52.381 17.39 0.00 0.00 1.63
2455 3127 0.839946 ACCAGCTGAAAGGCCGATAT 59.160 50.000 17.39 0.00 0.00 1.63
2457 3129 1.377725 CACCAGCTGAAAGGCCGAT 60.378 57.895 17.39 0.00 0.00 4.18
2475 3147 3.923017 AGCAAATGTAGCAGTGAAACC 57.077 42.857 0.00 0.00 37.80 3.27
2518 3255 3.244875 ACAATCCACATACTGACTGCCAA 60.245 43.478 0.00 0.00 0.00 4.52
2550 3287 3.132646 ACACAAAACTGTGATGTGCCAAT 59.867 39.130 19.93 4.49 46.42 3.16
2551 3288 2.495270 ACACAAAACTGTGATGTGCCAA 59.505 40.909 19.93 0.00 46.42 4.52
2650 3391 4.275689 TCAGCAAGACAAGTATGTTTGTGG 59.724 41.667 1.89 0.00 41.15 4.17
2724 3467 6.295632 GCCTGTAAAATATGGAAACCTGGTTT 60.296 38.462 24.06 24.06 38.54 3.27
3234 3982 7.384477 TGATGGACATGCATGATTTGTTTTTA 58.616 30.769 32.75 6.42 0.00 1.52
3235 3983 6.231951 TGATGGACATGCATGATTTGTTTTT 58.768 32.000 32.75 7.05 0.00 1.94
3369 4302 8.050325 TGGTGCAACAATAAGGTAGTGTATAAT 58.950 33.333 0.00 0.00 39.98 1.28
3370 4303 7.395617 TGGTGCAACAATAAGGTAGTGTATAA 58.604 34.615 0.00 0.00 39.98 0.98
3371 4304 6.948589 TGGTGCAACAATAAGGTAGTGTATA 58.051 36.000 0.00 0.00 39.98 1.47
3372 4305 5.811190 TGGTGCAACAATAAGGTAGTGTAT 58.189 37.500 0.00 0.00 39.98 2.29
3418 4387 9.903682 ATCATTGCAGAATATTACTGTAAATGC 57.096 29.630 21.39 10.17 41.49 3.56
3480 4475 9.143631 CTGTAAATTTGAATTTCCAAGGATCAC 57.856 33.333 0.00 0.00 39.24 3.06
3550 4547 6.773976 TTTAATTTCCTGGAAGCATGGTAG 57.226 37.500 9.42 0.00 0.00 3.18
3711 4720 9.363763 CATATAATGTCATCAGATGGTACTGTC 57.636 37.037 10.67 0.00 38.79 3.51
3715 4724 8.728337 ATGCATATAATGTCATCAGATGGTAC 57.272 34.615 10.67 3.10 0.00 3.34
3732 4741 9.515020 GAAATTCCAAAACGAGAAATGCATATA 57.485 29.630 0.00 0.00 0.00 0.86
3874 4931 6.510879 TGTCTGATATACTTGACACTTCGT 57.489 37.500 0.00 0.00 34.94 3.85
3928 4985 0.255890 TGGCAAGCTAATGGGACCTC 59.744 55.000 0.00 0.00 0.00 3.85
4030 5087 1.651987 CGTACACATAAGCAGTGGGG 58.348 55.000 0.00 0.00 41.21 4.96
4062 5119 7.541122 AGAAAGAGAATTAAAGTATGCGACC 57.459 36.000 0.00 0.00 0.00 4.79
4065 5122 6.688813 GCCAAGAAAGAGAATTAAAGTATGCG 59.311 38.462 0.00 0.00 0.00 4.73
4111 5168 0.539438 ATCAAACGGGGCTGCTGAAA 60.539 50.000 0.00 0.00 0.00 2.69
4174 5231 6.455513 CGAATGAGTTCAATTATTCTGTGCGA 60.456 38.462 0.00 0.00 33.86 5.10
4177 5234 8.189709 TCTCGAATGAGTTCAATTATTCTGTG 57.810 34.615 0.00 0.00 43.09 3.66
4295 5353 9.291664 CTAGTTTGCTACTACTAAAGATGACAC 57.708 37.037 0.00 0.00 38.33 3.67
4517 5581 3.059597 GCCTTGCATCGATGTACACATAC 60.060 47.826 25.47 7.75 36.57 2.39
4528 5592 1.219124 GACTCTGGCCTTGCATCGA 59.781 57.895 3.32 0.00 0.00 3.59
4533 5597 2.749441 GGCTGACTCTGGCCTTGC 60.749 66.667 3.32 0.00 44.48 4.01
4543 5607 3.584733 AGAAAAACAAGAGGGCTGACT 57.415 42.857 0.00 0.00 0.00 3.41
4615 5679 9.213777 TGACATTTTAGATACTCCTACAGGAAT 57.786 33.333 0.00 0.00 44.91 3.01
4704 5768 1.343789 CAGGAGATGGAGATGTGCGAT 59.656 52.381 0.00 0.00 0.00 4.58
4705 5769 0.749049 CAGGAGATGGAGATGTGCGA 59.251 55.000 0.00 0.00 0.00 5.10
4729 5793 6.049149 CCATCATTTAACACTCACGGTATCT 58.951 40.000 0.00 0.00 0.00 1.98
4736 5800 5.235186 CGGATCTCCATCATTTAACACTCAC 59.765 44.000 0.00 0.00 35.14 3.51
4788 5856 9.672673 CACAAATAATTAGTATATAGCCAGGCT 57.327 33.333 20.63 20.63 43.41 4.58
4809 5877 5.067544 TGCAACAAACTCTGATCATCACAAA 59.932 36.000 0.00 0.00 0.00 2.83
4834 5903 0.933047 CAGCGGATGCATTGCAATCG 60.933 55.000 23.51 23.51 43.62 3.34
4845 5914 1.302033 GGGGTATCTGCAGCGGATG 60.302 63.158 24.89 0.00 31.33 3.51
4864 5934 2.904866 GGGCGGCGGATTAATGCA 60.905 61.111 9.78 0.00 0.00 3.96
4889 5959 7.759465 AGACCATTATATATTGACGTACGGAG 58.241 38.462 21.06 0.00 0.00 4.63
4939 6009 4.096382 GCGGTGATCTCCATGTTATGTTTT 59.904 41.667 13.99 0.00 0.00 2.43
4963 6033 2.373335 TAAGCAGCAAAAGGGTGGAA 57.627 45.000 0.00 0.00 45.14 3.53
4982 6052 2.046892 GACCAGCACACCAGCGAT 60.047 61.111 0.00 0.00 40.15 4.58
4984 6054 3.907260 ATGGACCAGCACACCAGCG 62.907 63.158 0.00 0.00 40.15 5.18
4987 6057 2.282391 GCATGGACCAGCACACCA 60.282 61.111 0.00 0.00 38.09 4.17
4996 6066 2.193248 GTAGGCAGGGCATGGACC 59.807 66.667 0.00 0.00 0.00 4.46
5004 6074 1.227380 GTGCAGATCGTAGGCAGGG 60.227 63.158 4.95 0.00 38.38 4.45
5017 6087 2.126071 CCACCTACCGTCGTGCAG 60.126 66.667 0.00 0.00 0.00 4.41
5024 6094 3.391382 GCTGAGGCCACCTACCGT 61.391 66.667 5.01 0.00 31.76 4.83
5036 6106 2.985456 GACCAGTGGGAGGCTGAG 59.015 66.667 15.21 0.00 36.12 3.35
5098 6168 1.668151 GTGGAAGCTCGTGGACCAC 60.668 63.158 15.13 15.13 42.83 4.16
5099 6169 2.741092 GTGGAAGCTCGTGGACCA 59.259 61.111 0.00 0.00 0.00 4.02
5100 6170 2.047179 GGTGGAAGCTCGTGGACC 60.047 66.667 0.00 0.00 0.00 4.46
5102 6172 2.741092 GTGGTGGAAGCTCGTGGA 59.259 61.111 0.00 0.00 33.76 4.02
5141 6220 0.889994 ACGCCGTACATGTACTCCAA 59.110 50.000 28.53 0.00 34.04 3.53
5144 6223 1.143969 GCCACGCCGTACATGTACTC 61.144 60.000 28.53 19.96 34.04 2.59
5145 6224 1.153706 GCCACGCCGTACATGTACT 60.154 57.895 28.53 11.37 34.04 2.73
5165 6244 4.530857 GCCCGTGCTGACGCCTAT 62.531 66.667 0.00 0.00 44.68 2.57
5191 6270 1.900545 GCACGAGGAAGTAAGCCCCT 61.901 60.000 0.00 0.00 0.00 4.79
5194 6273 0.741221 CCAGCACGAGGAAGTAAGCC 60.741 60.000 0.00 0.00 0.00 4.35
5195 6274 0.246635 TCCAGCACGAGGAAGTAAGC 59.753 55.000 0.00 0.00 30.71 3.09
5197 6276 1.000506 GTGTCCAGCACGAGGAAGTAA 59.999 52.381 0.00 0.00 38.45 2.24
5198 6277 0.601558 GTGTCCAGCACGAGGAAGTA 59.398 55.000 0.00 0.00 38.45 2.24
5200 6279 4.268687 GTGTCCAGCACGAGGAAG 57.731 61.111 0.00 0.00 38.45 3.46
5223 6302 3.503363 GCATCCACGTCAGGCTGC 61.503 66.667 10.34 5.16 42.74 5.25
5231 6310 3.188100 CACGCATCGCATCCACGT 61.188 61.111 0.00 0.00 37.47 4.49
5314 6393 1.767681 GAGCTCATTGGATGGAGAGGT 59.232 52.381 9.40 0.00 41.08 3.85
5326 6405 1.133668 GGTTGGCATAGGGAGCTCATT 60.134 52.381 17.19 5.20 0.00 2.57
5328 6407 1.915228 GGTTGGCATAGGGAGCTCA 59.085 57.895 17.19 0.00 0.00 4.26
5333 6412 3.804329 GGGCGGTTGGCATAGGGA 61.804 66.667 0.00 0.00 46.16 4.20
5412 6491 1.899437 ATGGTCTCGACGCCCAACAT 61.899 55.000 5.10 0.00 0.00 2.71
5413 6492 2.501223 GATGGTCTCGACGCCCAACA 62.501 60.000 5.10 0.00 0.00 3.33
5416 6495 2.058001 ATGATGGTCTCGACGCCCA 61.058 57.895 3.71 3.71 0.00 5.36
5417 6496 1.592669 CATGATGGTCTCGACGCCC 60.593 63.158 0.00 0.00 0.00 6.13
5426 6505 2.508526 GGATTACCCAGCATGATGGTC 58.491 52.381 27.41 17.93 39.69 4.02
5435 6514 0.733150 GCAAAGTCGGATTACCCAGC 59.267 55.000 0.00 0.00 34.14 4.85
5568 6647 1.203928 CGACACGATCCTTGATCTGC 58.796 55.000 0.00 0.00 36.96 4.26
5569 6648 1.203928 GCGACACGATCCTTGATCTG 58.796 55.000 0.00 3.27 36.96 2.90
5570 6649 0.103208 GGCGACACGATCCTTGATCT 59.897 55.000 0.00 0.00 36.96 2.75
5571 6650 0.103208 AGGCGACACGATCCTTGATC 59.897 55.000 0.00 0.00 35.88 2.92
5592 6671 4.279671 CCAATCAGATAGTAGGAGAAGCGT 59.720 45.833 0.00 0.00 0.00 5.07
5606 6685 1.679944 CGTGACCTTGGCCAATCAGAT 60.680 52.381 20.85 0.00 0.00 2.90
5687 6766 2.848694 AGGATCTTGATGTGATGGTGGT 59.151 45.455 0.00 0.00 0.00 4.16
5696 6775 2.103263 GGCGTAGGAAGGATCTTGATGT 59.897 50.000 0.00 0.00 0.00 3.06
5712 6791 0.034337 GTGGAAGGTGTTGAGGCGTA 59.966 55.000 0.00 0.00 0.00 4.42
5718 6797 1.525077 GCCGTGTGGAAGGTGTTGA 60.525 57.895 0.00 0.00 37.49 3.18
5720 6799 2.590575 CGCCGTGTGGAAGGTGTT 60.591 61.111 0.00 0.00 37.49 3.32
5798 6877 1.212935 ACATAGTCTGTTGGATGCCCC 59.787 52.381 0.00 0.00 32.90 5.80
5808 6887 1.001974 TGCCGCTCAAACATAGTCTGT 59.998 47.619 0.00 0.00 40.84 3.41
5811 6890 0.375106 GCTGCCGCTCAAACATAGTC 59.625 55.000 0.00 0.00 0.00 2.59
5844 6923 2.594592 GCGTCCACAAAGCACCCT 60.595 61.111 0.00 0.00 32.01 4.34
5859 6938 3.490759 GTGATCTGTGTGCCGGCG 61.491 66.667 23.90 6.99 0.00 6.46
5929 7008 2.045926 GTACCCCCACTGCTGCAG 60.046 66.667 27.02 27.02 37.52 4.41
6005 7084 3.700970 TCAACCTCGGGATGCGCA 61.701 61.111 14.96 14.96 0.00 6.09
6138 7217 0.032952 CCGTGGTCGTGGGGTATATG 59.967 60.000 0.00 0.00 35.01 1.78
6139 7218 1.117142 CCCGTGGTCGTGGGGTATAT 61.117 60.000 0.00 0.00 42.05 0.86
6141 7220 3.078836 CCCGTGGTCGTGGGGTAT 61.079 66.667 0.00 0.00 42.05 2.73
6243 7322 1.446966 GTCGGCTTCACAGCTCTCC 60.447 63.158 0.00 0.00 46.44 3.71
6275 7354 2.265904 CCTCGTCACCACTCGGACA 61.266 63.158 0.00 0.00 33.66 4.02
6313 7392 4.424626 TGAGTGACTAATGATTGACGAGC 58.575 43.478 0.00 0.00 0.00 5.03
6347 7426 1.745087 CAGTTAAGGATGGCGCACAAT 59.255 47.619 10.83 0.00 0.00 2.71
6401 7481 4.234550 AGGGAGGACACTATGCATGAATA 58.765 43.478 10.16 0.00 0.00 1.75
6433 9837 6.814146 CCAAGTCTAGGTTGAATCTACAACTC 59.186 42.308 0.00 0.00 46.17 3.01
6476 9880 9.106070 CCTAACTAACTTAATGATGTGGTTACC 57.894 37.037 0.00 0.00 0.00 2.85
6491 9896 9.597170 GAGTTATTTTCGGATCCTAACTAACTT 57.403 33.333 24.22 15.78 33.88 2.66
6516 9921 1.142870 CAAGAGGTTCCCAACACCAGA 59.857 52.381 0.00 0.00 36.67 3.86
6525 9932 1.682087 GCCCATGTACAAGAGGTTCCC 60.682 57.143 0.00 0.00 0.00 3.97
6526 9933 1.682087 GGCCCATGTACAAGAGGTTCC 60.682 57.143 0.00 2.87 0.00 3.62
6571 9980 4.433615 AGCATGGTATGAACAAGTCTACG 58.566 43.478 0.00 0.00 0.00 3.51
6646 10056 3.181440 GGGGATCACTGCCAGATAATGAA 60.181 47.826 0.00 0.00 33.72 2.57
6660 10070 0.468029 AAATCCATGCCGGGGATCAC 60.468 55.000 10.74 0.00 44.30 3.06
6722 10295 8.193438 GCTACCTTCTGAATTTCAATTGCTAAT 58.807 33.333 0.00 0.30 0.00 1.73
6789 10368 8.093927 TGGAACTTTTTCATCATGGAAATTACC 58.906 33.333 0.00 0.00 36.71 2.85
6911 10541 9.522804 GTATCTTTTTGTTTAACACCATCAACA 57.477 29.630 0.00 0.00 0.00 3.33
6933 10563 4.987832 ACTTGACACATCGACAGAGTATC 58.012 43.478 0.00 0.00 0.00 2.24
6934 10564 6.701145 ATACTTGACACATCGACAGAGTAT 57.299 37.500 0.00 0.00 0.00 2.12
6935 10565 7.307219 CGATATACTTGACACATCGACAGAGTA 60.307 40.741 0.00 0.00 40.62 2.59
6936 10566 6.511929 CGATATACTTGACACATCGACAGAGT 60.512 42.308 0.00 0.00 40.62 3.24
6937 10567 5.848559 CGATATACTTGACACATCGACAGAG 59.151 44.000 0.00 0.00 40.62 3.35
6939 10569 4.912187 CCGATATACTTGACACATCGACAG 59.088 45.833 4.00 0.00 40.62 3.51
6940 10570 4.577283 TCCGATATACTTGACACATCGACA 59.423 41.667 4.00 0.00 40.62 4.35
7001 10631 3.502595 CCTCATAGCAAGCTCATGAATGG 59.497 47.826 0.00 2.59 0.00 3.16
7131 10765 9.193806 ACATGCCAAGAAAGAGAATTATAATGT 57.806 29.630 0.00 0.00 0.00 2.71
7250 10894 4.220724 ACAGTCTTGGCCCGTATATCTTA 58.779 43.478 0.00 0.00 0.00 2.10
7309 10962 2.477375 TCTCGTGTTACGGAATGCAAAC 59.523 45.455 0.00 0.00 42.81 2.93
7368 11161 2.750712 GCGGTGCTTGGATTTAACCTTA 59.249 45.455 0.00 0.00 0.00 2.69
7419 11212 5.874810 ACTGTCTGTTATTCGCACATACAAT 59.125 36.000 0.00 0.00 32.62 2.71
7471 11275 3.080319 ACCACGAGACCTAAGTCACTAC 58.920 50.000 0.00 0.00 46.15 2.73
7516 11325 1.328279 GGGGTTCCTGAAACACAAGG 58.672 55.000 0.00 0.00 43.56 3.61
7541 11350 2.655090 TGAAGTGGAAATGCTGGTGA 57.345 45.000 0.00 0.00 0.00 4.02
7549 11358 4.402616 TCCCTGGAAATGAAGTGGAAAT 57.597 40.909 0.00 0.00 0.00 2.17
7583 11392 2.034053 GGAATCTCACCTGACGCTAGAG 59.966 54.545 0.00 0.00 0.00 2.43
7696 11519 6.480320 CAGAATACTTCAGCGGCTACTTAATT 59.520 38.462 0.26 0.38 0.00 1.40
7720 11543 3.028130 TCGATCCACACTAACATAGGCA 58.972 45.455 0.00 0.00 0.00 4.75
7761 11584 5.605534 AGATCAACTACATGGTAGATGTGC 58.394 41.667 10.17 5.72 33.76 4.57
7839 12329 6.636003 TGTATAAGGGAATGGAGGGTGTATA 58.364 40.000 0.00 0.00 0.00 1.47
7844 12334 4.386424 GCTTTGTATAAGGGAATGGAGGGT 60.386 45.833 0.00 0.00 0.00 4.34
7845 12335 4.145052 GCTTTGTATAAGGGAATGGAGGG 58.855 47.826 0.00 0.00 0.00 4.30
7846 12336 4.145052 GGCTTTGTATAAGGGAATGGAGG 58.855 47.826 0.00 0.00 0.00 4.30
7847 12337 4.580580 GTGGCTTTGTATAAGGGAATGGAG 59.419 45.833 0.00 0.00 0.00 3.86
7848 12338 4.229582 AGTGGCTTTGTATAAGGGAATGGA 59.770 41.667 0.00 0.00 0.00 3.41
7849 12339 4.536765 AGTGGCTTTGTATAAGGGAATGG 58.463 43.478 0.00 0.00 0.00 3.16
7865 12355 1.940613 GACACGAAAGACAAAGTGGCT 59.059 47.619 0.00 0.00 37.28 4.75
7871 12361 6.003234 TCAAAGTTTGACACGAAAGACAAA 57.997 33.333 14.35 0.00 34.08 2.83
7872 12362 5.614923 TCAAAGTTTGACACGAAAGACAA 57.385 34.783 14.35 0.00 34.08 3.18
7942 12432 8.824781 CACATCTCAAAGAACTTATCGATGATT 58.175 33.333 8.54 0.00 33.26 2.57
7975 12465 9.547753 GGTATATGTCACAAAGAAGTATGTCAT 57.452 33.333 0.00 0.00 0.00 3.06
7977 12467 9.250624 GAGGTATATGTCACAAAGAAGTATGTC 57.749 37.037 0.00 0.00 0.00 3.06
7983 12473 8.553459 AAAGTGAGGTATATGTCACAAAGAAG 57.447 34.615 15.88 0.00 44.70 2.85
7986 12476 8.567948 ACAAAAAGTGAGGTATATGTCACAAAG 58.432 33.333 15.88 6.86 44.70 2.77
7989 12479 6.367695 CGACAAAAAGTGAGGTATATGTCACA 59.632 38.462 15.88 0.00 44.70 3.58
7990 12480 6.183360 CCGACAAAAAGTGAGGTATATGTCAC 60.183 42.308 8.65 8.65 42.95 3.67
7991 12481 5.872617 CCGACAAAAAGTGAGGTATATGTCA 59.127 40.000 0.00 0.00 36.59 3.58
7992 12482 5.873164 ACCGACAAAAAGTGAGGTATATGTC 59.127 40.000 0.00 0.00 39.05 3.06
7993 12483 5.801380 ACCGACAAAAAGTGAGGTATATGT 58.199 37.500 0.00 0.00 39.05 2.29
7994 12484 7.837202 TTACCGACAAAAAGTGAGGTATATG 57.163 36.000 0.00 0.00 40.76 1.78
8055 12551 2.175499 CCCTCCATTCTTATCCAAGGCA 59.825 50.000 0.00 0.00 32.22 4.75
8059 12555 5.729229 TGTTACTCCCTCCATTCTTATCCAA 59.271 40.000 0.00 0.00 0.00 3.53
8062 12558 7.775561 ACAAATGTTACTCCCTCCATTCTTATC 59.224 37.037 0.00 0.00 0.00 1.75
8106 12602 9.656323 AGATAAACATATAGTACTGGGAGAACA 57.344 33.333 5.39 0.00 0.00 3.18
8134 12630 6.014156 GGTGCTGTAGGGAGAGATAAACATAT 60.014 42.308 0.00 0.00 0.00 1.78
8135 12631 5.304614 GGTGCTGTAGGGAGAGATAAACATA 59.695 44.000 0.00 0.00 0.00 2.29
8136 12632 4.101741 GGTGCTGTAGGGAGAGATAAACAT 59.898 45.833 0.00 0.00 0.00 2.71
8137 12633 3.451178 GGTGCTGTAGGGAGAGATAAACA 59.549 47.826 0.00 0.00 0.00 2.83
8138 12634 3.181464 GGGTGCTGTAGGGAGAGATAAAC 60.181 52.174 0.00 0.00 0.00 2.01
8139 12635 3.039011 GGGTGCTGTAGGGAGAGATAAA 58.961 50.000 0.00 0.00 0.00 1.40
8140 12636 2.679082 GGGTGCTGTAGGGAGAGATAA 58.321 52.381 0.00 0.00 0.00 1.75
8141 12637 1.478837 CGGGTGCTGTAGGGAGAGATA 60.479 57.143 0.00 0.00 0.00 1.98
8142 12638 0.757188 CGGGTGCTGTAGGGAGAGAT 60.757 60.000 0.00 0.00 0.00 2.75
8143 12639 1.379977 CGGGTGCTGTAGGGAGAGA 60.380 63.158 0.00 0.00 0.00 3.10
8144 12640 3.082579 GCGGGTGCTGTAGGGAGAG 62.083 68.421 0.00 0.00 38.39 3.20
8145 12641 3.075005 GCGGGTGCTGTAGGGAGA 61.075 66.667 0.00 0.00 38.39 3.71
8146 12642 4.162690 GGCGGGTGCTGTAGGGAG 62.163 72.222 0.00 0.00 42.25 4.30
8147 12643 2.808761 TAAGGCGGGTGCTGTAGGGA 62.809 60.000 0.00 0.00 42.25 4.20
8148 12644 2.363975 TAAGGCGGGTGCTGTAGGG 61.364 63.158 0.00 0.00 42.25 3.53
8149 12645 1.153429 GTAAGGCGGGTGCTGTAGG 60.153 63.158 0.00 0.00 42.25 3.18
8174 12670 2.685850 AACGTACTAATGCCTCCCAC 57.314 50.000 0.00 0.00 0.00 4.61
8203 12714 0.893270 TCAACGGGGTTGCTGAATGG 60.893 55.000 3.68 0.00 42.55 3.16
8210 12721 0.970427 ATCCCAATCAACGGGGTTGC 60.970 55.000 3.68 0.00 44.62 4.17
8211 12722 2.428544 TATCCCAATCAACGGGGTTG 57.571 50.000 2.16 2.16 44.62 3.77
8222 12733 2.831526 GTGCCACCTTGTTTATCCCAAT 59.168 45.455 0.00 0.00 0.00 3.16
8223 12734 2.158385 AGTGCCACCTTGTTTATCCCAA 60.158 45.455 0.00 0.00 0.00 4.12
8225 12736 2.092323 GAGTGCCACCTTGTTTATCCC 58.908 52.381 0.00 0.00 0.00 3.85
8228 12739 3.327757 TGAGAGAGTGCCACCTTGTTTAT 59.672 43.478 0.00 0.00 0.00 1.40
8230 12741 1.490490 TGAGAGAGTGCCACCTTGTTT 59.510 47.619 0.00 0.00 0.00 2.83
8233 12744 3.616956 TTATGAGAGAGTGCCACCTTG 57.383 47.619 0.00 0.00 0.00 3.61
8235 12746 5.957771 TTATTTATGAGAGAGTGCCACCT 57.042 39.130 0.00 0.00 0.00 4.00
8238 12749 9.662947 CATGATATTATTTATGAGAGAGTGCCA 57.337 33.333 0.00 0.00 0.00 4.92
8266 13721 9.079833 GTACGAGTTTAGCTTATTATGTGTGAA 57.920 33.333 0.00 0.00 0.00 3.18
8267 13722 7.430211 CGTACGAGTTTAGCTTATTATGTGTGA 59.570 37.037 10.44 0.00 0.00 3.58
8269 13724 7.475015 TCGTACGAGTTTAGCTTATTATGTGT 58.525 34.615 15.28 0.00 0.00 3.72
8281 13736 5.277731 GGGAATACCTCTCGTACGAGTTTAG 60.278 48.000 36.67 28.01 42.49 1.85
8283 13738 3.379688 GGGAATACCTCTCGTACGAGTTT 59.620 47.826 36.67 25.69 42.49 2.66
8292 13759 1.070758 CATGGTGGGGAATACCTCTCG 59.929 57.143 0.00 0.00 39.01 4.04
8297 13764 2.711009 TCTGATCATGGTGGGGAATACC 59.289 50.000 0.00 0.00 38.71 2.73
8304 13771 2.238144 AGTTCAGTCTGATCATGGTGGG 59.762 50.000 12.41 0.00 0.00 4.61
8311 13778 8.455903 AGAAAATCAAAAGTTCAGTCTGATCA 57.544 30.769 12.41 0.00 0.00 2.92
8315 13782 9.357652 TGAAAAGAAAATCAAAAGTTCAGTCTG 57.642 29.630 0.00 0.00 0.00 3.51
8330 14459 9.710900 AACTTGAAGTTGACTTGAAAAGAAAAT 57.289 25.926 10.18 0.00 41.21 1.82
8333 14462 7.312899 GGAACTTGAAGTTGACTTGAAAAGAA 58.687 34.615 16.25 0.00 42.28 2.52
8335 14464 5.739161 CGGAACTTGAAGTTGACTTGAAAAG 59.261 40.000 16.25 5.36 44.13 2.27
8345 14474 5.873179 TTATAAGGCGGAACTTGAAGTTG 57.127 39.130 16.25 3.11 38.80 3.16
8348 14477 9.849166 TTAAAATTTATAAGGCGGAACTTGAAG 57.151 29.630 0.00 0.00 32.02 3.02
8351 14480 9.634163 ACTTTAAAATTTATAAGGCGGAACTTG 57.366 29.630 13.62 0.00 32.02 3.16
8352 14481 9.634163 CACTTTAAAATTTATAAGGCGGAACTT 57.366 29.630 13.62 0.00 34.52 2.66
8357 14486 7.317390 ACACCACTTTAAAATTTATAAGGCGG 58.683 34.615 13.62 14.20 0.00 6.13
8358 14487 9.498307 CTACACCACTTTAAAATTTATAAGGCG 57.502 33.333 13.62 7.62 0.00 5.52
8365 14494 8.347035 GCACACTCTACACCACTTTAAAATTTA 58.653 33.333 0.00 0.00 0.00 1.40
8369 14498 4.577283 GGCACACTCTACACCACTTTAAAA 59.423 41.667 0.00 0.00 0.00 1.52
8371 14500 3.134985 TGGCACACTCTACACCACTTTAA 59.865 43.478 0.00 0.00 0.00 1.52
8372 14501 2.701423 TGGCACACTCTACACCACTTTA 59.299 45.455 0.00 0.00 0.00 1.85
8373 14502 1.488812 TGGCACACTCTACACCACTTT 59.511 47.619 0.00 0.00 0.00 2.66
8374 14503 1.128200 TGGCACACTCTACACCACTT 58.872 50.000 0.00 0.00 0.00 3.16
8375 14504 2.834631 TGGCACACTCTACACCACT 58.165 52.632 0.00 0.00 0.00 4.00
8385 14514 7.393234 TTTGCTAAATAGTAAAGATGGCACACT 59.607 33.333 0.00 0.00 35.46 3.55
8386 14515 7.484959 GTTTGCTAAATAGTAAAGATGGCACAC 59.515 37.037 4.27 0.00 38.81 3.82
8387 14516 7.393234 AGTTTGCTAAATAGTAAAGATGGCACA 59.607 33.333 4.27 0.00 39.69 4.57
8388 14517 7.762382 AGTTTGCTAAATAGTAAAGATGGCAC 58.238 34.615 4.27 0.00 38.31 5.01
8389 14518 7.938140 AGTTTGCTAAATAGTAAAGATGGCA 57.062 32.000 4.27 0.00 38.31 4.92
8390 14519 8.070769 GCTAGTTTGCTAAATAGTAAAGATGGC 58.929 37.037 14.96 6.42 38.31 4.40
8391 14520 9.109393 TGCTAGTTTGCTAAATAGTAAAGATGG 57.891 33.333 14.96 1.36 38.31 3.51
8406 14535 9.231297 TCTCAACTTATATTTTGCTAGTTTGCT 57.769 29.630 0.00 0.00 0.00 3.91
8407 14536 9.495754 CTCTCAACTTATATTTTGCTAGTTTGC 57.504 33.333 0.00 0.00 0.00 3.68
8408 14537 9.495754 GCTCTCAACTTATATTTTGCTAGTTTG 57.504 33.333 0.00 0.00 0.00 2.93
8409 14538 8.678199 GGCTCTCAACTTATATTTTGCTAGTTT 58.322 33.333 0.00 0.00 0.00 2.66
8410 14539 7.829211 TGGCTCTCAACTTATATTTTGCTAGTT 59.171 33.333 0.00 0.00 0.00 2.24
8411 14540 7.281100 GTGGCTCTCAACTTATATTTTGCTAGT 59.719 37.037 0.00 0.00 0.00 2.57
8412 14541 7.280876 TGTGGCTCTCAACTTATATTTTGCTAG 59.719 37.037 0.00 0.00 0.00 3.42
8413 14542 7.109501 TGTGGCTCTCAACTTATATTTTGCTA 58.890 34.615 0.00 0.00 0.00 3.49
8414 14543 5.945784 TGTGGCTCTCAACTTATATTTTGCT 59.054 36.000 0.00 0.00 0.00 3.91
8415 14544 6.194796 TGTGGCTCTCAACTTATATTTTGC 57.805 37.500 0.00 0.00 0.00 3.68
8416 14545 9.474920 TTTTTGTGGCTCTCAACTTATATTTTG 57.525 29.630 0.00 0.00 0.00 2.44
8425 14554 9.461312 TGTAATATATTTTTGTGGCTCTCAACT 57.539 29.630 2.68 0.00 0.00 3.16
8428 14557 9.461312 AGTTGTAATATATTTTTGTGGCTCTCA 57.539 29.630 2.68 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.