Multiple sequence alignment - TraesCS6D01G354100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G354100 chr6D 100.000 5407 0 0 1 5407 449806379 449811785 0.000000e+00 9985.0
1 TraesCS6D01G354100 chr6B 90.875 1578 83 29 1605 3129 681920114 681921683 0.000000e+00 2060.0
2 TraesCS6D01G354100 chr6B 90.130 1611 108 20 3127 4718 681921767 681923345 0.000000e+00 2047.0
3 TraesCS6D01G354100 chr6B 91.922 619 32 11 4795 5404 681923709 681924318 0.000000e+00 850.0
4 TraesCS6D01G354100 chr6B 82.588 827 69 30 722 1513 681919330 681920116 0.000000e+00 660.0
5 TraesCS6D01G354100 chr6B 83.844 588 46 32 99 659 681918750 681919315 1.040000e-141 514.0
6 TraesCS6D01G354100 chr6B 94.681 94 5 0 4174 4267 681922848 681922941 4.360000e-31 147.0
7 TraesCS6D01G354100 chr6B 95.312 64 3 0 4174 4237 681922878 681922941 9.580000e-18 102.0
8 TraesCS6D01G354100 chr6B 86.517 89 10 2 4722 4809 681923603 681923690 4.460000e-16 97.1
9 TraesCS6D01G354100 chr6A 90.424 1556 99 24 1605 3129 595477263 595478799 0.000000e+00 2002.0
10 TraesCS6D01G354100 chr6A 91.684 1455 93 10 3273 4718 595478870 595480305 0.000000e+00 1991.0
11 TraesCS6D01G354100 chr6A 87.529 874 52 19 679 1513 595476410 595477265 0.000000e+00 957.0
12 TraesCS6D01G354100 chr6A 92.557 309 16 5 5106 5407 595481001 595481309 2.310000e-118 436.0
13 TraesCS6D01G354100 chr6A 84.302 344 34 4 4795 5138 595480676 595480999 8.740000e-83 318.0
14 TraesCS6D01G354100 chr6A 94.681 94 5 0 4174 4267 595479795 595479888 4.360000e-31 147.0
15 TraesCS6D01G354100 chr6A 83.019 159 26 1 5182 5339 609159259 609159417 5.650000e-30 143.0
16 TraesCS6D01G354100 chr6A 95.312 64 3 0 4174 4237 595479825 595479888 9.580000e-18 102.0
17 TraesCS6D01G354100 chr6A 93.878 49 1 1 17 63 595476039 595476087 7.510000e-09 73.1
18 TraesCS6D01G354100 chr5A 88.293 205 18 3 5127 5325 531892468 531892264 1.950000e-59 241.0
19 TraesCS6D01G354100 chr5A 88.293 205 18 3 5127 5325 532194139 532194343 1.950000e-59 241.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G354100 chr6D 449806379 449811785 5406 False 9985.0000 9985 100.000000 1 5407 1 chr6D.!!$F1 5406
1 TraesCS6D01G354100 chr6B 681918750 681924318 5568 False 809.6375 2060 89.483625 99 5404 8 chr6B.!!$F1 5305
2 TraesCS6D01G354100 chr6A 595476039 595481309 5270 False 753.2625 2002 91.295875 17 5407 8 chr6A.!!$F2 5390

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
234 242 0.035881 CATCCATCCATCCTCGGGTG 59.964 60.0 0.00 0.00 36.87 4.61 F
265 273 0.037882 TCTCTCCACGCTTGCTTCAG 60.038 55.0 0.00 0.00 0.00 3.02 F
751 948 0.178068 ACCGCAAGCCGATAGTTCAT 59.822 50.0 0.00 0.00 40.02 2.57 F
1565 1807 0.467384 TGGTGTCGTTTTACCCGGAA 59.533 50.0 0.73 0.00 36.10 4.30 F
1854 2106 0.820871 AAGATGACTCGAGCCCTGAC 59.179 55.0 13.61 0.00 0.00 3.51 F
2665 2956 1.047034 ACGACGCTATTAGGGCCCTT 61.047 55.0 34.04 16.77 0.00 3.95 F
3356 3738 0.178858 TATCAACTCCACCACCCCCA 60.179 55.0 0.00 0.00 0.00 4.96 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1546 1788 0.467384 TTCCGGGTAAAACGACACCA 59.533 50.0 0.00 0.00 36.48 4.17 R
1797 2049 0.891373 GCATCTGGCCGCTAGATCTA 59.109 55.0 15.81 1.69 32.75 1.98 R
2641 2932 0.314302 CCCTAATAGCGTCGTCCCTG 59.686 60.0 0.00 0.00 0.00 4.45 R
3172 3554 0.104120 AAAGCTCCGTTTTGCAACCC 59.896 50.0 0.00 0.00 0.00 4.11 R
3337 3719 0.178858 TGGGGGTGGTGGAGTTGATA 60.179 55.0 0.00 0.00 0.00 2.15 R
3537 3919 0.988832 GGATGTGTCAGGGGTTGGTA 59.011 55.0 0.00 0.00 0.00 3.25 R
4934 5640 0.620030 TCTGCCTGCTAGCAATTGGA 59.380 50.0 22.21 13.85 43.52 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 66 0.460987 CGAGCGCAAGGAAGAGGAAT 60.461 55.000 11.47 0.00 38.28 3.01
66 69 0.392998 GCGCAAGGAAGAGGAATCCA 60.393 55.000 0.30 0.00 39.55 3.41
67 70 1.950484 GCGCAAGGAAGAGGAATCCAA 60.950 52.381 0.30 0.00 39.55 3.53
69 72 2.616510 CGCAAGGAAGAGGAATCCAACT 60.617 50.000 0.61 0.00 39.55 3.16
70 73 2.751806 GCAAGGAAGAGGAATCCAACTG 59.248 50.000 0.61 0.00 39.55 3.16
71 74 2.751806 CAAGGAAGAGGAATCCAACTGC 59.248 50.000 0.61 0.00 39.55 4.40
72 75 1.283321 AGGAAGAGGAATCCAACTGCC 59.717 52.381 13.33 13.33 39.55 4.85
73 76 1.283321 GGAAGAGGAATCCAACTGCCT 59.717 52.381 13.75 0.00 36.92 4.75
74 77 2.637947 GAAGAGGAATCCAACTGCCTC 58.362 52.381 0.61 0.00 45.70 4.70
76 79 2.035530 GAGGAATCCAACTGCCTCTG 57.964 55.000 0.61 0.00 42.81 3.35
77 80 1.280421 GAGGAATCCAACTGCCTCTGT 59.720 52.381 0.61 0.00 42.81 3.41
78 81 1.280421 AGGAATCCAACTGCCTCTGTC 59.720 52.381 0.61 0.00 0.00 3.51
79 82 1.280421 GGAATCCAACTGCCTCTGTCT 59.720 52.381 0.00 0.00 0.00 3.41
80 83 2.290577 GGAATCCAACTGCCTCTGTCTT 60.291 50.000 0.00 0.00 0.00 3.01
81 84 2.777832 ATCCAACTGCCTCTGTCTTC 57.222 50.000 0.00 0.00 0.00 2.87
82 85 0.687354 TCCAACTGCCTCTGTCTTCC 59.313 55.000 0.00 0.00 0.00 3.46
83 86 0.322008 CCAACTGCCTCTGTCTTCCC 60.322 60.000 0.00 0.00 0.00 3.97
84 87 0.671781 CAACTGCCTCTGTCTTCCCG 60.672 60.000 0.00 0.00 0.00 5.14
85 88 2.125350 CTGCCTCTGTCTTCCCGC 60.125 66.667 0.00 0.00 0.00 6.13
86 89 2.604686 TGCCTCTGTCTTCCCGCT 60.605 61.111 0.00 0.00 0.00 5.52
87 90 2.185608 GCCTCTGTCTTCCCGCTC 59.814 66.667 0.00 0.00 0.00 5.03
88 91 2.896443 CCTCTGTCTTCCCGCTCC 59.104 66.667 0.00 0.00 0.00 4.70
89 92 2.726351 CCTCTGTCTTCCCGCTCCC 61.726 68.421 0.00 0.00 0.00 4.30
90 93 1.984570 CTCTGTCTTCCCGCTCCCA 60.985 63.158 0.00 0.00 0.00 4.37
91 94 1.954362 CTCTGTCTTCCCGCTCCCAG 61.954 65.000 0.00 0.00 0.00 4.45
92 95 3.003173 TGTCTTCCCGCTCCCAGG 61.003 66.667 0.00 0.00 0.00 4.45
93 96 4.475135 GTCTTCCCGCTCCCAGGC 62.475 72.222 0.00 0.00 0.00 4.85
94 97 4.722535 TCTTCCCGCTCCCAGGCT 62.723 66.667 0.00 0.00 0.00 4.58
95 98 3.721706 CTTCCCGCTCCCAGGCTT 61.722 66.667 0.00 0.00 0.00 4.35
96 99 2.285069 TTCCCGCTCCCAGGCTTA 60.285 61.111 0.00 0.00 0.00 3.09
134 137 3.379445 CAGGCAGGCAAGGCAAGG 61.379 66.667 0.00 0.00 36.37 3.61
216 224 1.839994 GAGACCACTTCCATCCATCCA 59.160 52.381 0.00 0.00 0.00 3.41
217 225 2.441001 GAGACCACTTCCATCCATCCAT 59.559 50.000 0.00 0.00 0.00 3.41
218 226 2.441001 AGACCACTTCCATCCATCCATC 59.559 50.000 0.00 0.00 0.00 3.51
219 227 1.496429 ACCACTTCCATCCATCCATCC 59.504 52.381 0.00 0.00 0.00 3.51
220 228 1.496001 CCACTTCCATCCATCCATCCA 59.504 52.381 0.00 0.00 0.00 3.41
221 229 2.109480 CCACTTCCATCCATCCATCCAT 59.891 50.000 0.00 0.00 0.00 3.41
223 231 2.377869 ACTTCCATCCATCCATCCATCC 59.622 50.000 0.00 0.00 0.00 3.51
224 232 2.136974 TCCATCCATCCATCCATCCA 57.863 50.000 0.00 0.00 0.00 3.41
225 233 2.651190 TCCATCCATCCATCCATCCAT 58.349 47.619 0.00 0.00 0.00 3.41
226 234 2.579400 TCCATCCATCCATCCATCCATC 59.421 50.000 0.00 0.00 0.00 3.51
227 235 2.357881 CCATCCATCCATCCATCCATCC 60.358 54.545 0.00 0.00 0.00 3.51
229 237 2.272698 TCCATCCATCCATCCATCCTC 58.727 52.381 0.00 0.00 0.00 3.71
230 238 1.065636 CCATCCATCCATCCATCCTCG 60.066 57.143 0.00 0.00 0.00 4.63
234 242 0.035881 CATCCATCCATCCTCGGGTG 59.964 60.000 0.00 0.00 36.87 4.61
238 246 1.074926 ATCCATCCTCGGGTGAGCT 60.075 57.895 0.00 0.00 41.13 4.09
261 269 0.390866 CACATCTCTCCACGCTTGCT 60.391 55.000 0.00 0.00 0.00 3.91
262 270 0.322975 ACATCTCTCCACGCTTGCTT 59.677 50.000 0.00 0.00 0.00 3.91
263 271 1.005340 CATCTCTCCACGCTTGCTTC 58.995 55.000 0.00 0.00 0.00 3.86
264 272 0.610174 ATCTCTCCACGCTTGCTTCA 59.390 50.000 0.00 0.00 0.00 3.02
265 273 0.037882 TCTCTCCACGCTTGCTTCAG 60.038 55.000 0.00 0.00 0.00 3.02
266 274 0.320247 CTCTCCACGCTTGCTTCAGT 60.320 55.000 0.00 0.00 0.00 3.41
271 452 1.854126 CCACGCTTGCTTCAGTTTTTG 59.146 47.619 0.00 0.00 0.00 2.44
276 457 2.807837 GCTTGCTTCAGTTTTTGGCCAT 60.808 45.455 6.09 0.00 0.00 4.40
305 486 3.732849 CTGGTCCCTTCCCTGCCC 61.733 72.222 0.00 0.00 0.00 5.36
306 487 4.285790 TGGTCCCTTCCCTGCCCT 62.286 66.667 0.00 0.00 0.00 5.19
307 488 3.732849 GGTCCCTTCCCTGCCCTG 61.733 72.222 0.00 0.00 0.00 4.45
308 489 4.432741 GTCCCTTCCCTGCCCTGC 62.433 72.222 0.00 0.00 0.00 4.85
349 530 2.040544 CCGGACGGCAGCAGATTTT 61.041 57.895 0.00 0.00 0.00 1.82
369 550 6.803154 TTTTCTTCTGCCTTTCTTACTAGC 57.197 37.500 0.00 0.00 0.00 3.42
375 556 5.631119 TCTGCCTTTCTTACTAGCCTTTTT 58.369 37.500 0.00 0.00 0.00 1.94
417 598 7.281100 TGGTTTGTTTGTTTGTTTGTTTTCTCT 59.719 29.630 0.00 0.00 0.00 3.10
429 610 7.475015 TGTTTGTTTTCTCTCAACTGAATGAG 58.525 34.615 8.31 8.31 46.62 2.90
434 615 6.889301 TTTCTCTCAACTGAATGAGCAAAT 57.111 33.333 9.36 0.00 45.21 2.32
450 631 3.989817 AGCAAATCAATTTTCGGTTGCTC 59.010 39.130 2.99 0.00 46.43 4.26
481 662 0.392193 CGATCCTGCTGCTTCCAACT 60.392 55.000 0.00 0.00 0.00 3.16
520 701 4.770874 GCCGCTCCTGCCGGTTTA 62.771 66.667 1.90 0.00 36.03 2.01
521 702 2.189521 CCGCTCCTGCCGGTTTAT 59.810 61.111 1.90 0.00 35.36 1.40
522 703 1.451387 CCGCTCCTGCCGGTTTATT 60.451 57.895 1.90 0.00 35.36 1.40
523 704 1.029947 CCGCTCCTGCCGGTTTATTT 61.030 55.000 1.90 0.00 35.36 1.40
526 707 2.420722 CGCTCCTGCCGGTTTATTTTTA 59.579 45.455 1.90 0.00 35.36 1.52
549 739 3.258872 TGATTCTTGTTGGGGATTGCAAG 59.741 43.478 4.94 0.00 39.52 4.01
551 741 2.676748 TCTTGTTGGGGATTGCAAGTT 58.323 42.857 4.94 0.00 39.28 2.66
584 774 2.439156 GCTGCTTGCCTCCGGATT 60.439 61.111 3.57 0.00 35.15 3.01
610 800 3.016260 GGGATTTGTCCCCTCCCC 58.984 66.667 1.91 0.00 44.18 4.81
630 820 2.412591 CCCCTCTCTCTCTCTCTCTCT 58.587 57.143 0.00 0.00 0.00 3.10
636 826 3.706594 TCTCTCTCTCTCTCTCTCTCACC 59.293 52.174 0.00 0.00 0.00 4.02
647 837 1.812922 CTCTCACCATCAGCCGCAC 60.813 63.158 0.00 0.00 0.00 5.34
659 849 1.587946 CAGCCGCACTTTGTTTGTTTC 59.412 47.619 0.00 0.00 0.00 2.78
662 852 2.029124 GCCGCACTTTGTTTGTTTCTTG 59.971 45.455 0.00 0.00 0.00 3.02
664 854 3.506810 CGCACTTTGTTTGTTTCTTGGA 58.493 40.909 0.00 0.00 0.00 3.53
666 856 4.566360 CGCACTTTGTTTGTTTCTTGGATT 59.434 37.500 0.00 0.00 0.00 3.01
667 857 5.063312 CGCACTTTGTTTGTTTCTTGGATTT 59.937 36.000 0.00 0.00 0.00 2.17
668 858 6.477742 GCACTTTGTTTGTTTCTTGGATTTC 58.522 36.000 0.00 0.00 0.00 2.17
669 859 6.695245 CACTTTGTTTGTTTCTTGGATTTCG 58.305 36.000 0.00 0.00 0.00 3.46
670 860 5.290885 ACTTTGTTTGTTTCTTGGATTTCGC 59.709 36.000 0.00 0.00 0.00 4.70
671 861 3.712187 TGTTTGTTTCTTGGATTTCGCC 58.288 40.909 0.00 0.00 0.00 5.54
672 862 3.057019 GTTTGTTTCTTGGATTTCGCCC 58.943 45.455 0.00 0.00 0.00 6.13
673 863 0.878416 TGTTTCTTGGATTTCGCCCG 59.122 50.000 0.00 0.00 0.00 6.13
674 864 0.456142 GTTTCTTGGATTTCGCCCGC 60.456 55.000 0.00 0.00 0.00 6.13
675 865 1.591504 TTTCTTGGATTTCGCCCGCC 61.592 55.000 0.00 0.00 0.00 6.13
676 866 3.518068 CTTGGATTTCGCCCGCCC 61.518 66.667 0.00 0.00 0.00 6.13
677 867 3.995506 CTTGGATTTCGCCCGCCCT 62.996 63.158 0.00 0.00 0.00 5.19
690 880 2.580815 GCCCTGCAAAATCCAGCC 59.419 61.111 0.00 0.00 0.00 4.85
713 903 1.936547 GGCTCTCGCTTGATTTGGTAG 59.063 52.381 0.00 0.00 36.09 3.18
728 925 0.328258 GGTAGGGCTGCTTTCCTTCA 59.672 55.000 0.00 0.00 34.75 3.02
735 932 1.089920 CTGCTTTCCTTCATCCACCG 58.910 55.000 0.00 0.00 0.00 4.94
737 934 0.960364 GCTTTCCTTCATCCACCGCA 60.960 55.000 0.00 0.00 0.00 5.69
745 942 1.227527 CATCCACCGCAAGCCGATA 60.228 57.895 0.00 0.00 40.02 2.92
746 943 1.069765 ATCCACCGCAAGCCGATAG 59.930 57.895 0.00 0.00 40.02 2.08
749 946 1.429148 CCACCGCAAGCCGATAGTTC 61.429 60.000 0.00 0.00 40.02 3.01
750 947 0.739462 CACCGCAAGCCGATAGTTCA 60.739 55.000 0.00 0.00 40.02 3.18
751 948 0.178068 ACCGCAAGCCGATAGTTCAT 59.822 50.000 0.00 0.00 40.02 2.57
752 949 1.299541 CCGCAAGCCGATAGTTCATT 58.700 50.000 0.00 0.00 40.02 2.57
755 952 3.100817 CGCAAGCCGATAGTTCATTTTG 58.899 45.455 0.00 0.00 40.02 2.44
756 953 2.854185 GCAAGCCGATAGTTCATTTTGC 59.146 45.455 0.00 0.00 33.83 3.68
757 954 3.438360 CAAGCCGATAGTTCATTTTGCC 58.562 45.455 0.00 0.00 0.00 4.52
758 955 3.004752 AGCCGATAGTTCATTTTGCCT 57.995 42.857 0.00 0.00 0.00 4.75
759 956 3.356290 AGCCGATAGTTCATTTTGCCTT 58.644 40.909 0.00 0.00 0.00 4.35
760 957 3.378427 AGCCGATAGTTCATTTTGCCTTC 59.622 43.478 0.00 0.00 0.00 3.46
799 996 1.909376 TAGTTCGCGCTCTGATGTTC 58.091 50.000 5.56 0.00 0.00 3.18
803 1000 0.867329 TCGCGCTCTGATGTTCGATG 60.867 55.000 5.56 0.00 0.00 3.84
804 1001 1.275066 GCGCTCTGATGTTCGATGC 59.725 57.895 0.00 0.00 0.00 3.91
829 1027 0.872388 AATTGGACGCCTCGTTTGTC 59.128 50.000 0.00 0.00 41.37 3.18
881 1091 4.783621 TGGGACAGCGATGCAGCC 62.784 66.667 0.00 0.00 38.01 4.85
897 1107 1.678970 GCCTGGCAGTTTACCCCAG 60.679 63.158 15.17 9.17 44.49 4.45
899 1109 0.988832 CCTGGCAGTTTACCCCAGTA 59.011 55.000 14.43 0.00 43.61 2.74
900 1110 1.353022 CCTGGCAGTTTACCCCAGTAA 59.647 52.381 14.43 0.00 43.61 2.24
922 1134 3.963428 AACTAAACTCTGCATCCGTCT 57.037 42.857 0.00 0.00 0.00 4.18
936 1148 1.291588 CGTCTGTTGGCTCTGCTCT 59.708 57.895 0.00 0.00 0.00 4.09
942 1154 0.520847 GTTGGCTCTGCTCTGCTTTC 59.479 55.000 0.00 0.00 0.00 2.62
958 1170 2.223135 GCTTTCTTGCAGATCGGTAAGC 60.223 50.000 16.67 4.53 29.41 3.09
1096 1331 4.495422 AGTCAACAGCGATTACAAGGTAG 58.505 43.478 0.00 0.00 0.00 3.18
1147 1389 5.585047 TGTCTCTTGCATCATTCATCTCAAG 59.415 40.000 0.00 0.00 34.04 3.02
1163 1405 7.845037 TCATCTCAAGATTTGCTTCTAGAGAA 58.155 34.615 0.00 0.00 36.99 2.87
1164 1406 8.316946 TCATCTCAAGATTTGCTTCTAGAGAAA 58.683 33.333 0.00 0.00 36.99 2.52
1168 1410 9.771915 CTCAAGATTTGCTTCTAGAGAAATTTC 57.228 33.333 10.33 10.33 33.60 2.17
1276 1518 6.574465 GCAAAGGAGAAGTACATCAGAGGTAA 60.574 42.308 0.00 0.00 0.00 2.85
1297 1539 9.003658 AGGTAATAACAAACTCATGTTTCTCTG 57.996 33.333 0.00 0.00 43.75 3.35
1308 1550 6.122850 TCATGTTTCTCTGAACAAGTGTTG 57.877 37.500 0.42 0.00 42.29 3.33
1310 1552 5.295431 TGTTTCTCTGAACAAGTGTTGTG 57.705 39.130 0.42 0.00 44.59 3.33
1311 1553 4.759693 TGTTTCTCTGAACAAGTGTTGTGT 59.240 37.500 0.42 0.00 44.59 3.72
1313 1555 6.128391 TGTTTCTCTGAACAAGTGTTGTGTAC 60.128 38.462 0.42 0.00 44.59 2.90
1315 1557 3.537580 TCTGAACAAGTGTTGTGTACCC 58.462 45.455 0.42 0.00 44.59 3.69
1344 1586 5.127682 ACTGAAGGACAACAGCTTTGATTTT 59.872 36.000 13.35 6.08 37.61 1.82
1352 1594 2.034558 ACAGCTTTGATTTTCCACCACG 59.965 45.455 0.00 0.00 0.00 4.94
1382 1624 1.649321 TGTGCTTCCTGTCTCCAGAT 58.351 50.000 0.00 0.00 41.50 2.90
1407 1649 3.855255 TCATGCATCTTAATTCCGGGA 57.145 42.857 0.00 0.00 0.00 5.14
1496 1738 3.054655 GGGCGGTATGTCCACCATAATAT 60.055 47.826 0.00 0.00 44.04 1.28
1500 1742 6.826741 GGCGGTATGTCCACCATAATATATTT 59.173 38.462 2.68 0.00 37.77 1.40
1501 1743 7.012044 GGCGGTATGTCCACCATAATATATTTC 59.988 40.741 2.68 0.00 37.77 2.17
1503 1745 8.265055 CGGTATGTCCACCATAATATATTTCCT 58.735 37.037 2.68 0.00 37.77 3.36
1504 1746 9.614792 GGTATGTCCACCATAATATATTTCCTC 57.385 37.037 2.68 0.00 37.77 3.71
1506 1748 7.311092 TGTCCACCATAATATATTTCCTCGT 57.689 36.000 2.68 0.00 0.00 4.18
1507 1749 8.425237 TGTCCACCATAATATATTTCCTCGTA 57.575 34.615 2.68 0.00 0.00 3.43
1508 1750 9.042450 TGTCCACCATAATATATTTCCTCGTAT 57.958 33.333 2.68 0.00 0.00 3.06
1511 1753 9.884636 CCACCATAATATATTTCCTCGTATTCA 57.115 33.333 2.68 0.00 0.00 2.57
1518 1760 9.618890 AATATATTTCCTCGTATTCATGGATGG 57.381 33.333 0.00 0.00 0.00 3.51
1519 1761 5.567037 ATTTCCTCGTATTCATGGATGGA 57.433 39.130 0.00 0.00 0.00 3.41
1520 1762 5.366482 TTTCCTCGTATTCATGGATGGAA 57.634 39.130 0.00 0.00 0.00 3.53
1521 1763 4.336889 TCCTCGTATTCATGGATGGAAC 57.663 45.455 0.00 0.00 0.00 3.62
1522 1764 3.071023 TCCTCGTATTCATGGATGGAACC 59.929 47.826 0.00 0.00 0.00 3.62
1523 1765 3.071602 CCTCGTATTCATGGATGGAACCT 59.928 47.826 0.00 0.00 0.00 3.50
1524 1766 4.283467 CCTCGTATTCATGGATGGAACCTA 59.717 45.833 0.00 0.00 0.00 3.08
1525 1767 5.046304 CCTCGTATTCATGGATGGAACCTAT 60.046 44.000 0.00 0.00 0.00 2.57
1526 1768 6.037786 TCGTATTCATGGATGGAACCTATC 57.962 41.667 0.00 0.00 0.00 2.08
1540 1782 5.391312 GAACCTATCCAGTTTGTGCAATT 57.609 39.130 0.00 0.00 0.00 2.32
1541 1783 5.391312 AACCTATCCAGTTTGTGCAATTC 57.609 39.130 0.00 0.00 0.00 2.17
1542 1784 4.666512 ACCTATCCAGTTTGTGCAATTCT 58.333 39.130 0.00 0.00 0.00 2.40
1543 1785 4.702131 ACCTATCCAGTTTGTGCAATTCTC 59.298 41.667 0.00 0.00 0.00 2.87
1544 1786 4.096984 CCTATCCAGTTTGTGCAATTCTCC 59.903 45.833 0.00 0.00 0.00 3.71
1545 1787 2.942804 TCCAGTTTGTGCAATTCTCCA 58.057 42.857 0.00 0.00 0.00 3.86
1546 1788 3.499338 TCCAGTTTGTGCAATTCTCCAT 58.501 40.909 0.00 0.00 0.00 3.41
1547 1789 3.256383 TCCAGTTTGTGCAATTCTCCATG 59.744 43.478 0.00 0.00 0.00 3.66
1548 1790 3.581755 CAGTTTGTGCAATTCTCCATGG 58.418 45.455 4.97 4.97 0.00 3.66
1549 1791 3.006110 CAGTTTGTGCAATTCTCCATGGT 59.994 43.478 12.58 0.00 0.00 3.55
1550 1792 3.006110 AGTTTGTGCAATTCTCCATGGTG 59.994 43.478 12.58 9.91 0.00 4.17
1551 1793 2.291209 TGTGCAATTCTCCATGGTGT 57.709 45.000 12.58 0.00 0.00 4.16
1552 1794 2.161855 TGTGCAATTCTCCATGGTGTC 58.838 47.619 12.58 0.00 0.00 3.67
1553 1795 1.131126 GTGCAATTCTCCATGGTGTCG 59.869 52.381 12.58 0.00 0.00 4.35
1554 1796 1.271325 TGCAATTCTCCATGGTGTCGT 60.271 47.619 12.58 0.00 0.00 4.34
1555 1797 1.812571 GCAATTCTCCATGGTGTCGTT 59.187 47.619 12.58 3.75 0.00 3.85
1556 1798 2.228822 GCAATTCTCCATGGTGTCGTTT 59.771 45.455 12.58 0.20 0.00 3.60
1557 1799 3.305335 GCAATTCTCCATGGTGTCGTTTT 60.305 43.478 12.58 0.00 0.00 2.43
1558 1800 4.083003 GCAATTCTCCATGGTGTCGTTTTA 60.083 41.667 12.58 0.00 0.00 1.52
1559 1801 5.390613 CAATTCTCCATGGTGTCGTTTTAC 58.609 41.667 12.58 0.00 0.00 2.01
1560 1802 3.048337 TCTCCATGGTGTCGTTTTACC 57.952 47.619 12.58 0.00 37.48 2.85
1561 1803 2.081462 CTCCATGGTGTCGTTTTACCC 58.919 52.381 12.58 0.00 36.10 3.69
1562 1804 0.800012 CCATGGTGTCGTTTTACCCG 59.200 55.000 2.57 0.00 36.10 5.28
1563 1805 0.800012 CATGGTGTCGTTTTACCCGG 59.200 55.000 0.00 0.00 36.10 5.73
1564 1806 0.686224 ATGGTGTCGTTTTACCCGGA 59.314 50.000 0.73 0.00 36.10 5.14
1565 1807 0.467384 TGGTGTCGTTTTACCCGGAA 59.533 50.000 0.73 0.00 36.10 4.30
1566 1808 1.134280 TGGTGTCGTTTTACCCGGAAA 60.134 47.619 0.73 0.00 36.10 3.13
1567 1809 2.153645 GGTGTCGTTTTACCCGGAAAT 58.846 47.619 0.73 0.00 0.00 2.17
1568 1810 2.553602 GGTGTCGTTTTACCCGGAAATT 59.446 45.455 0.73 0.00 0.00 1.82
1569 1811 3.365264 GGTGTCGTTTTACCCGGAAATTC 60.365 47.826 0.73 0.00 0.00 2.17
1570 1812 3.250521 GTGTCGTTTTACCCGGAAATTCA 59.749 43.478 0.73 0.00 0.00 2.57
1571 1813 3.499157 TGTCGTTTTACCCGGAAATTCAG 59.501 43.478 0.73 0.00 0.00 3.02
1572 1814 3.747529 GTCGTTTTACCCGGAAATTCAGA 59.252 43.478 0.73 0.00 0.00 3.27
1573 1815 4.393990 GTCGTTTTACCCGGAAATTCAGAT 59.606 41.667 0.73 0.00 0.00 2.90
1574 1816 5.005094 TCGTTTTACCCGGAAATTCAGATT 58.995 37.500 0.73 0.00 0.00 2.40
1575 1817 5.092781 CGTTTTACCCGGAAATTCAGATTG 58.907 41.667 0.73 0.00 0.00 2.67
1576 1818 5.335348 CGTTTTACCCGGAAATTCAGATTGT 60.335 40.000 0.73 0.00 0.00 2.71
1577 1819 6.452242 GTTTTACCCGGAAATTCAGATTGTT 58.548 36.000 0.73 0.00 0.00 2.83
1578 1820 5.637006 TTACCCGGAAATTCAGATTGTTG 57.363 39.130 0.73 0.00 0.00 3.33
1579 1821 2.231235 ACCCGGAAATTCAGATTGTTGC 59.769 45.455 0.73 0.00 0.00 4.17
1580 1822 2.493278 CCCGGAAATTCAGATTGTTGCT 59.507 45.455 0.73 0.00 0.00 3.91
1581 1823 3.056607 CCCGGAAATTCAGATTGTTGCTT 60.057 43.478 0.73 0.00 0.00 3.91
1582 1824 4.168760 CCGGAAATTCAGATTGTTGCTTC 58.831 43.478 0.00 0.00 0.00 3.86
1583 1825 4.082571 CCGGAAATTCAGATTGTTGCTTCT 60.083 41.667 0.00 0.00 0.00 2.85
1584 1826 4.855388 CGGAAATTCAGATTGTTGCTTCTG 59.145 41.667 0.00 0.00 40.58 3.02
1585 1827 5.563475 CGGAAATTCAGATTGTTGCTTCTGT 60.563 40.000 0.00 0.00 40.22 3.41
1586 1828 5.860716 GGAAATTCAGATTGTTGCTTCTGTC 59.139 40.000 0.00 0.00 40.22 3.51
1587 1829 6.395426 AAATTCAGATTGTTGCTTCTGTCA 57.605 33.333 0.00 0.00 40.22 3.58
1588 1830 5.624344 ATTCAGATTGTTGCTTCTGTCAG 57.376 39.130 0.00 0.00 40.22 3.51
1589 1831 4.077300 TCAGATTGTTGCTTCTGTCAGT 57.923 40.909 0.00 0.00 40.22 3.41
1590 1832 5.213891 TCAGATTGTTGCTTCTGTCAGTA 57.786 39.130 0.00 0.00 40.22 2.74
1591 1833 5.798132 TCAGATTGTTGCTTCTGTCAGTAT 58.202 37.500 0.00 0.00 40.22 2.12
1592 1834 6.935167 TCAGATTGTTGCTTCTGTCAGTATA 58.065 36.000 0.00 0.00 40.22 1.47
1593 1835 7.559486 TCAGATTGTTGCTTCTGTCAGTATAT 58.441 34.615 0.00 0.00 40.22 0.86
1594 1836 8.695456 TCAGATTGTTGCTTCTGTCAGTATATA 58.305 33.333 0.00 0.00 40.22 0.86
1595 1837 9.486497 CAGATTGTTGCTTCTGTCAGTATATAT 57.514 33.333 0.00 0.00 35.66 0.86
1598 1840 8.818141 TTGTTGCTTCTGTCAGTATATATAGC 57.182 34.615 0.00 0.00 0.00 2.97
1599 1841 7.951591 TGTTGCTTCTGTCAGTATATATAGCA 58.048 34.615 0.00 0.00 34.62 3.49
1600 1842 7.867909 TGTTGCTTCTGTCAGTATATATAGCAC 59.132 37.037 0.00 0.00 36.01 4.40
1601 1843 7.767250 TGCTTCTGTCAGTATATATAGCACT 57.233 36.000 0.00 0.00 31.80 4.40
1602 1844 8.183104 TGCTTCTGTCAGTATATATAGCACTT 57.817 34.615 0.00 0.00 31.80 3.16
1603 1845 8.300286 TGCTTCTGTCAGTATATATAGCACTTC 58.700 37.037 0.00 0.00 31.80 3.01
1628 1870 6.183360 CCATTATCCAAGCAAATGATGTCTGT 60.183 38.462 0.00 0.00 33.38 3.41
1630 1872 5.733620 ATCCAAGCAAATGATGTCTGTTT 57.266 34.783 0.00 0.00 0.00 2.83
1642 1884 6.785488 TGATGTCTGTTTTACTTGCTACTG 57.215 37.500 0.00 0.00 0.00 2.74
1645 1887 5.666462 TGTCTGTTTTACTTGCTACTGTCA 58.334 37.500 0.00 0.00 0.00 3.58
1660 1902 2.224378 ACTGTCAGGGTGATGTTCAGTG 60.224 50.000 4.53 0.00 36.22 3.66
1667 1909 5.719563 TCAGGGTGATGTTCAGTGACTAATA 59.280 40.000 0.00 0.00 0.00 0.98
1686 1932 8.798859 ACTAATATGGAATGGTGCTTATGATC 57.201 34.615 0.00 0.00 0.00 2.92
1697 1943 5.294306 TGGTGCTTATGATCGATGAACTTTC 59.706 40.000 0.54 0.00 0.00 2.62
1698 1944 5.427082 GTGCTTATGATCGATGAACTTTCG 58.573 41.667 0.54 0.00 37.94 3.46
1699 1945 5.005779 GTGCTTATGATCGATGAACTTTCGT 59.994 40.000 0.54 0.00 37.82 3.85
1702 1948 6.625310 GCTTATGATCGATGAACTTTCGTTTC 59.375 38.462 0.54 0.00 37.82 2.78
1703 1949 7.464710 GCTTATGATCGATGAACTTTCGTTTCT 60.465 37.037 0.54 0.00 37.82 2.52
1704 1950 5.515548 TGATCGATGAACTTTCGTTTCTG 57.484 39.130 0.54 0.00 37.82 3.02
1705 1951 3.788434 TCGATGAACTTTCGTTTCTGC 57.212 42.857 0.00 0.00 37.82 4.26
1845 2097 6.536582 ACATGTCCTATTTCAAAGATGACTCG 59.463 38.462 0.00 0.00 34.61 4.18
1854 2106 0.820871 AAGATGACTCGAGCCCTGAC 59.179 55.000 13.61 0.00 0.00 3.51
1919 2171 5.156804 TCTGAACTTTCTCTTTCGCAAAC 57.843 39.130 0.00 0.00 0.00 2.93
1922 2174 5.704888 TGAACTTTCTCTTTCGCAAACAAA 58.295 33.333 0.00 0.00 0.00 2.83
1923 2175 6.329496 TGAACTTTCTCTTTCGCAAACAAAT 58.671 32.000 0.00 0.00 0.00 2.32
1925 2177 7.971168 TGAACTTTCTCTTTCGCAAACAAATAA 59.029 29.630 0.00 0.00 0.00 1.40
1926 2178 7.679659 ACTTTCTCTTTCGCAAACAAATAAC 57.320 32.000 0.00 0.00 0.00 1.89
1931 2185 6.690957 TCTCTTTCGCAAACAAATAACAACTG 59.309 34.615 0.00 0.00 0.00 3.16
2060 2318 3.492656 CGTCGAACTGGATCCATTGGTAT 60.493 47.826 16.63 0.00 0.00 2.73
2122 2408 6.933514 ATTGGTTTGGTCCATAACATCTTT 57.066 33.333 0.43 0.00 37.33 2.52
2248 2537 4.682860 GTCAGGTGATTCATTGCTTTGTTG 59.317 41.667 0.00 0.00 0.00 3.33
2303 2592 9.535878 TTTTTGAGGTGTCATGGTATTTAAAAC 57.464 29.630 0.00 0.00 30.85 2.43
2324 2613 2.223340 CCTGCATTGCTTACCGTTGATC 60.223 50.000 10.49 0.00 0.00 2.92
2329 2618 4.216257 GCATTGCTTACCGTTGATCCATAT 59.784 41.667 0.16 0.00 0.00 1.78
2330 2619 5.278463 GCATTGCTTACCGTTGATCCATATT 60.278 40.000 0.16 0.00 0.00 1.28
2349 2638 1.861542 TTTTTCAGCCGCATGGGTCG 61.862 55.000 9.14 0.00 46.57 4.79
2394 2683 1.134907 CATGCCCTTTCAATGGTGAGC 60.135 52.381 0.00 0.00 34.49 4.26
2397 2686 1.135721 GCCCTTTCAATGGTGAGCATC 59.864 52.381 0.00 0.00 34.49 3.91
2482 2771 4.217550 GCTTGTAAATGGAAGGTTGCTACA 59.782 41.667 0.00 0.00 0.00 2.74
2560 2849 2.480845 GTACCGGCCACTAGCTTATTG 58.519 52.381 0.00 0.00 43.05 1.90
2618 2909 3.430042 ACACCATTGACATCTTCTGCT 57.570 42.857 0.00 0.00 0.00 4.24
2665 2956 1.047034 ACGACGCTATTAGGGCCCTT 61.047 55.000 34.04 16.77 0.00 3.95
2803 3096 6.922980 TTCTCTGTACTTATCGTCGTTTTG 57.077 37.500 0.00 0.00 0.00 2.44
2841 3134 5.185828 AGGGCAACTTTCTGGATTTTATGAC 59.814 40.000 0.00 0.00 0.00 3.06
2889 3182 4.396166 CGGGATGAGAAGCTGTTAACAATT 59.604 41.667 10.03 7.54 0.00 2.32
2912 3205 1.247567 CAGGTTTGGTTCGCATCCTT 58.752 50.000 0.00 0.00 0.00 3.36
2927 3220 5.473162 TCGCATCCTTGGGATTATTTGTATG 59.527 40.000 0.00 0.00 39.79 2.39
2944 3237 8.816640 ATTTGTATGTTTCCATTGTTGTTCTC 57.183 30.769 0.00 0.00 32.29 2.87
3079 3375 9.450807 CAGGTTTGAAACTTCTACAAGTAAATG 57.549 33.333 8.09 0.00 42.45 2.32
3117 3413 7.939784 TTTCTCTCACAGTTCAGCTAGTATA 57.060 36.000 0.00 0.00 0.00 1.47
3172 3554 7.878127 TGATGGAAGACTAAAGTAAGAAACAGG 59.122 37.037 0.00 0.00 0.00 4.00
3173 3555 6.531021 TGGAAGACTAAAGTAAGAAACAGGG 58.469 40.000 0.00 0.00 0.00 4.45
3201 3583 1.068474 ACGGAGCTTTCGATTGTTCG 58.932 50.000 15.61 0.00 46.87 3.95
3211 3593 2.073056 TCGATTGTTCGGTTGACCATG 58.927 47.619 0.51 0.00 45.53 3.66
3214 3596 1.313772 TTGTTCGGTTGACCATGTGG 58.686 50.000 0.51 0.00 42.17 4.17
3271 3653 6.688073 TCCTCCTTGCTAATATTTCTAGGG 57.312 41.667 13.63 4.88 0.00 3.53
3337 3719 5.104318 ACAGAAAACCAGAAGAGGAAGAAGT 60.104 40.000 0.00 0.00 0.00 3.01
3353 3735 2.572104 AGAAGTATCAACTCCACCACCC 59.428 50.000 0.00 0.00 33.75 4.61
3356 3738 0.178858 TATCAACTCCACCACCCCCA 60.179 55.000 0.00 0.00 0.00 4.96
3484 3866 9.416794 CACTAGAGCAACCACATATTATCTTAG 57.583 37.037 0.00 0.00 0.00 2.18
3522 3904 5.125097 AGCCTAACAAATTCATCTCTGCTTG 59.875 40.000 0.00 0.00 0.00 4.01
3537 3919 1.616921 CTTGGCAGGGGATGGATGT 59.383 57.895 0.00 0.00 0.00 3.06
3538 3920 0.846015 CTTGGCAGGGGATGGATGTA 59.154 55.000 0.00 0.00 0.00 2.29
3553 3935 1.349688 GATGTACCAACCCCTGACACA 59.650 52.381 0.00 0.00 0.00 3.72
3600 3982 1.202627 GGCCTTGGCAATTGTTGAACA 60.203 47.619 14.04 0.00 0.00 3.18
3610 3992 6.210385 TGGCAATTGTTGAACAAGGTACATAT 59.790 34.615 16.43 0.00 41.94 1.78
3613 3997 9.801873 GCAATTGTTGAACAAGGTACATATATT 57.198 29.630 16.43 0.00 41.94 1.28
3627 4011 9.354673 AGGTACATATATTTTCCAAATGGACTG 57.645 33.333 0.54 0.00 45.39 3.51
3642 4026 8.026607 CCAAATGGACTGTCGTAATTTGTTAAT 58.973 33.333 24.63 3.96 36.49 1.40
3655 4039 8.563949 CGTAATTTGTTAATCGTGTGAAATGTC 58.436 33.333 0.00 0.00 0.00 3.06
3656 4040 7.547285 AATTTGTTAATCGTGTGAAATGTCG 57.453 32.000 0.00 0.00 0.00 4.35
3658 4042 4.308265 TGTTAATCGTGTGAAATGTCGGA 58.692 39.130 0.00 0.00 0.00 4.55
3659 4043 4.750598 TGTTAATCGTGTGAAATGTCGGAA 59.249 37.500 0.00 0.00 0.00 4.30
3663 4047 4.203950 TCGTGTGAAATGTCGGAAAAAG 57.796 40.909 0.00 0.00 0.00 2.27
3666 4050 5.031578 CGTGTGAAATGTCGGAAAAAGAAA 58.968 37.500 0.00 0.00 0.00 2.52
3670 4054 6.533367 TGTGAAATGTCGGAAAAAGAAAAAGG 59.467 34.615 0.00 0.00 0.00 3.11
3674 4058 7.534085 AATGTCGGAAAAAGAAAAAGGAAAC 57.466 32.000 0.00 0.00 0.00 2.78
3692 4076 4.546570 GAAACCAGGCACTAAAATGTGTC 58.453 43.478 0.00 0.00 42.32 3.67
3703 4087 5.003804 ACTAAAATGTGTCTGCCGATTCTT 58.996 37.500 0.00 0.00 0.00 2.52
3706 4090 0.035317 TGTGTCTGCCGATTCTTGCT 59.965 50.000 0.00 0.00 0.00 3.91
3818 4202 4.379793 GCAAGTGAAAATGTTGCTACTTCG 59.620 41.667 0.00 0.00 42.70 3.79
3861 4245 2.490991 ACACTTGCCTACGGTTTCTTC 58.509 47.619 0.00 0.00 0.00 2.87
3902 4286 1.680735 TCAAACTGACATTTTGCCGCT 59.319 42.857 12.18 0.00 34.50 5.52
4391 4790 2.816718 GGCAACGCCTATACCGGA 59.183 61.111 9.46 0.00 46.69 5.14
4438 4838 6.055588 TGTGGTGGTTTTTCTTTTTGTTTCA 58.944 32.000 0.00 0.00 0.00 2.69
4569 4976 0.620556 AGCCGTGAAGGATTGTCCAT 59.379 50.000 0.00 0.00 45.00 3.41
4572 4979 1.340017 CCGTGAAGGATTGTCCATGGT 60.340 52.381 12.58 0.00 45.00 3.55
4577 4984 5.125417 CGTGAAGGATTGTCCATGGTAATTT 59.875 40.000 12.58 6.41 39.61 1.82
4617 5024 7.505585 TGGTAACATCTTTTGAAACAGGAGAAT 59.494 33.333 0.00 0.00 46.17 2.40
4738 5146 9.822727 AAAATAAAGTTTTCCCTTGAGATAGGA 57.177 29.630 0.00 0.00 37.50 2.94
4739 5147 9.467796 AAATAAAGTTTTCCCTTGAGATAGGAG 57.532 33.333 0.00 0.00 37.50 3.69
4743 5412 6.716284 AGTTTTCCCTTGAGATAGGAGAAAG 58.284 40.000 0.00 0.00 36.61 2.62
4746 5415 7.516450 TTTCCCTTGAGATAGGAGAAAGAAT 57.484 36.000 0.00 0.00 37.50 2.40
4775 5444 5.182001 ACTGAACTGAAACTATGCATCAACC 59.818 40.000 0.19 0.00 0.00 3.77
4779 5448 4.154195 ACTGAAACTATGCATCAACCGAAC 59.846 41.667 0.19 0.00 0.00 3.95
4783 5452 3.262420 ACTATGCATCAACCGAACTGAC 58.738 45.455 0.19 0.00 0.00 3.51
4785 5454 0.948623 TGCATCAACCGAACTGACCG 60.949 55.000 0.00 0.00 0.00 4.79
4861 5563 4.358851 CAGAAGCTAGACAGAGTATGCAC 58.641 47.826 0.00 0.00 0.00 4.57
4885 5587 1.588082 CCATGGCAAACAGCTGACC 59.412 57.895 23.35 15.92 44.79 4.02
4930 5636 4.515567 GGAAGTTCAAGTTCCTACCAACAG 59.484 45.833 15.91 0.00 42.96 3.16
4934 5640 6.365520 AGTTCAAGTTCCTACCAACAGAAAT 58.634 36.000 0.00 0.00 29.71 2.17
4935 5641 6.486993 AGTTCAAGTTCCTACCAACAGAAATC 59.513 38.462 0.00 0.00 29.71 2.17
4938 5644 5.319043 AGTTCCTACCAACAGAAATCCAA 57.681 39.130 0.00 0.00 0.00 3.53
4939 5645 5.892348 AGTTCCTACCAACAGAAATCCAAT 58.108 37.500 0.00 0.00 0.00 3.16
4982 5688 0.179070 TACACGCAACTGAACAGGCA 60.179 50.000 6.76 0.00 0.00 4.75
4999 5705 5.423015 ACAGGCACACTTCACTGATATAAG 58.577 41.667 0.00 0.00 35.08 1.73
5071 5777 7.682787 AGTTGATGATCCCTATTTCTAGTGT 57.317 36.000 0.00 0.00 0.00 3.55
5080 5786 2.685850 ATTTCTAGTGTGGTACCGCC 57.314 50.000 22.54 13.56 37.90 6.13
5097 5803 1.097547 GCCAATAGCACGCAGACCAT 61.098 55.000 0.00 0.00 42.97 3.55
5100 5806 2.224042 CCAATAGCACGCAGACCATAGA 60.224 50.000 0.00 0.00 0.00 1.98
5119 5859 3.656496 AGATTCAGGAGAGGATGAAGCT 58.344 45.455 0.20 0.20 44.84 3.74
5151 5891 2.697761 GGCGCTGTACTCGTCCTCA 61.698 63.158 7.64 0.00 0.00 3.86
5330 6070 2.034532 CACCCACCTGCATGCAGA 59.965 61.111 42.21 13.57 46.30 4.26
5340 6080 0.452987 TGCATGCAGAGGCGAAATTC 59.547 50.000 18.46 0.00 45.35 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.079750 GTGTGAACGGGGAGAGAGC 60.080 63.158 0.00 0.00 0.00 4.09
1 2 0.038159 GTGTGTGAACGGGGAGAGAG 60.038 60.000 0.00 0.00 0.00 3.20
2 3 0.757561 TGTGTGTGAACGGGGAGAGA 60.758 55.000 0.00 0.00 0.00 3.10
3 4 0.600255 GTGTGTGTGAACGGGGAGAG 60.600 60.000 0.00 0.00 0.00 3.20
4 5 1.444250 GTGTGTGTGAACGGGGAGA 59.556 57.895 0.00 0.00 0.00 3.71
5 6 1.597027 GGTGTGTGTGAACGGGGAG 60.597 63.158 0.00 0.00 0.00 4.30
6 7 1.628238 AAGGTGTGTGTGAACGGGGA 61.628 55.000 0.00 0.00 0.00 4.81
7 8 1.153046 AAGGTGTGTGTGAACGGGG 60.153 57.895 0.00 0.00 0.00 5.73
8 9 2.021722 CAAGGTGTGTGTGAACGGG 58.978 57.895 0.00 0.00 0.00 5.28
9 10 1.355210 GCAAGGTGTGTGTGAACGG 59.645 57.895 0.00 0.00 0.00 4.44
10 11 1.095228 AGGCAAGGTGTGTGTGAACG 61.095 55.000 0.00 0.00 0.00 3.95
11 12 1.065551 GAAGGCAAGGTGTGTGTGAAC 59.934 52.381 0.00 0.00 0.00 3.18
12 13 1.064758 AGAAGGCAAGGTGTGTGTGAA 60.065 47.619 0.00 0.00 0.00 3.18
13 14 0.546122 AGAAGGCAAGGTGTGTGTGA 59.454 50.000 0.00 0.00 0.00 3.58
14 15 1.334869 GAAGAAGGCAAGGTGTGTGTG 59.665 52.381 0.00 0.00 0.00 3.82
15 16 1.680338 GAAGAAGGCAAGGTGTGTGT 58.320 50.000 0.00 0.00 0.00 3.72
54 57 2.637947 GAGGCAGTTGGATTCCTCTTC 58.362 52.381 3.95 0.00 41.35 2.87
63 66 0.687354 GGAAGACAGAGGCAGTTGGA 59.313 55.000 0.00 0.00 0.00 3.53
66 69 1.674057 CGGGAAGACAGAGGCAGTT 59.326 57.895 0.00 0.00 0.00 3.16
67 70 2.948720 GCGGGAAGACAGAGGCAGT 61.949 63.158 0.00 0.00 0.00 4.40
69 72 2.604686 AGCGGGAAGACAGAGGCA 60.605 61.111 0.00 0.00 0.00 4.75
70 73 2.185608 GAGCGGGAAGACAGAGGC 59.814 66.667 0.00 0.00 0.00 4.70
71 74 2.726351 GGGAGCGGGAAGACAGAGG 61.726 68.421 0.00 0.00 0.00 3.69
72 75 1.954362 CTGGGAGCGGGAAGACAGAG 61.954 65.000 0.00 0.00 0.00 3.35
73 76 1.984570 CTGGGAGCGGGAAGACAGA 60.985 63.158 0.00 0.00 0.00 3.41
74 77 2.581354 CTGGGAGCGGGAAGACAG 59.419 66.667 0.00 0.00 0.00 3.51
75 78 3.003173 CCTGGGAGCGGGAAGACA 61.003 66.667 0.00 0.00 0.00 3.41
76 79 4.475135 GCCTGGGAGCGGGAAGAC 62.475 72.222 0.00 0.00 0.00 3.01
77 80 2.815684 TAAGCCTGGGAGCGGGAAGA 62.816 60.000 0.00 0.00 38.01 2.87
78 81 2.317149 CTAAGCCTGGGAGCGGGAAG 62.317 65.000 0.00 0.00 38.01 3.46
79 82 2.285069 TAAGCCTGGGAGCGGGAA 60.285 61.111 0.00 0.00 38.01 3.97
80 83 2.764128 CTAAGCCTGGGAGCGGGA 60.764 66.667 0.00 0.00 38.01 5.14
81 84 4.554036 GCTAAGCCTGGGAGCGGG 62.554 72.222 0.00 0.00 38.01 6.13
82 85 4.554036 GGCTAAGCCTGGGAGCGG 62.554 72.222 0.00 0.00 46.69 5.52
93 96 2.107953 GCGGAGGAGCTGGCTAAG 59.892 66.667 0.00 0.00 0.00 2.18
94 97 3.470888 GGCGGAGGAGCTGGCTAA 61.471 66.667 0.00 0.00 44.63 3.09
122 125 4.729918 CTCCGCCTTGCCTTGCCT 62.730 66.667 0.00 0.00 0.00 4.75
189 193 0.673985 TGGAAGTGGTCTCGACTGTG 59.326 55.000 0.00 0.00 0.00 3.66
216 224 0.104986 TCACCCGAGGATGGATGGAT 60.105 55.000 0.00 0.00 0.00 3.41
217 225 0.760567 CTCACCCGAGGATGGATGGA 60.761 60.000 0.00 0.00 35.44 3.41
218 226 1.750930 CTCACCCGAGGATGGATGG 59.249 63.158 0.00 0.00 35.44 3.51
219 227 1.070445 GCTCACCCGAGGATGGATG 59.930 63.158 0.00 0.00 39.88 3.51
220 228 0.188587 TAGCTCACCCGAGGATGGAT 59.811 55.000 0.00 0.00 39.88 3.41
221 229 0.188587 ATAGCTCACCCGAGGATGGA 59.811 55.000 0.00 0.00 39.88 3.41
223 231 1.688735 TGAATAGCTCACCCGAGGATG 59.311 52.381 0.00 0.00 39.88 3.51
224 232 2.088104 TGAATAGCTCACCCGAGGAT 57.912 50.000 0.00 0.00 39.88 3.24
225 233 3.607871 TGAATAGCTCACCCGAGGA 57.392 52.632 0.00 0.00 39.88 3.71
234 242 3.637432 CGTGGAGAGATGTGAATAGCTC 58.363 50.000 0.00 0.00 33.42 4.09
238 246 3.785486 CAAGCGTGGAGAGATGTGAATA 58.215 45.455 0.00 0.00 0.00 1.75
251 259 1.854126 CAAAAACTGAAGCAAGCGTGG 59.146 47.619 0.79 0.00 0.00 4.94
261 269 2.094100 TCCCATGGCCAAAAACTGAA 57.906 45.000 10.96 0.00 0.00 3.02
262 270 2.094100 TTCCCATGGCCAAAAACTGA 57.906 45.000 10.96 0.00 0.00 3.41
263 271 2.926778 TTTCCCATGGCCAAAAACTG 57.073 45.000 10.96 2.02 0.00 3.16
264 272 3.941704 TTTTTCCCATGGCCAAAAACT 57.058 38.095 20.65 0.00 0.00 2.66
286 467 4.432741 GCAGGGAAGGGACCAGGC 62.433 72.222 0.00 0.00 0.00 4.85
287 468 3.732849 GGCAGGGAAGGGACCAGG 61.733 72.222 0.00 0.00 0.00 4.45
288 469 3.732849 GGGCAGGGAAGGGACCAG 61.733 72.222 0.00 0.00 30.28 4.00
291 472 4.432741 GCAGGGCAGGGAAGGGAC 62.433 72.222 0.00 0.00 0.00 4.46
310 491 3.777925 CTGCAGAAACCGACGGCG 61.778 66.667 15.39 1.94 37.24 6.46
311 492 4.090057 GCTGCAGAAACCGACGGC 62.090 66.667 20.43 0.00 0.00 5.68
312 493 1.080093 TAGCTGCAGAAACCGACGG 60.080 57.895 20.43 13.61 0.00 4.79
313 494 1.352156 GGTAGCTGCAGAAACCGACG 61.352 60.000 20.43 0.00 0.00 5.12
314 495 2.457080 GGTAGCTGCAGAAACCGAC 58.543 57.895 20.43 5.82 0.00 4.79
349 530 4.097418 AGGCTAGTAAGAAAGGCAGAAGA 58.903 43.478 0.00 0.00 40.56 2.87
390 571 7.762382 AGAAAACAAACAAACAAACAAACCAA 58.238 26.923 0.00 0.00 0.00 3.67
391 572 7.281100 AGAGAAAACAAACAAACAAACAAACCA 59.719 29.630 0.00 0.00 0.00 3.67
392 573 7.635423 AGAGAAAACAAACAAACAAACAAACC 58.365 30.769 0.00 0.00 0.00 3.27
393 574 8.331742 TGAGAGAAAACAAACAAACAAACAAAC 58.668 29.630 0.00 0.00 0.00 2.93
396 577 7.708752 AGTTGAGAGAAAACAAACAAACAAACA 59.291 29.630 0.00 0.00 0.00 2.83
417 598 7.115236 CGAAAATTGATTTGCTCATTCAGTTGA 59.885 33.333 0.00 0.00 32.72 3.18
429 610 3.740321 TGAGCAACCGAAAATTGATTTGC 59.260 39.130 0.00 0.00 39.69 3.68
434 615 3.848272 GGATGAGCAACCGAAAATTGA 57.152 42.857 0.00 0.00 0.00 2.57
467 648 0.240411 GAAGCAGTTGGAAGCAGCAG 59.760 55.000 0.00 0.00 0.00 4.24
468 649 0.179009 AGAAGCAGTTGGAAGCAGCA 60.179 50.000 0.00 0.00 0.00 4.41
515 696 9.161629 CCCCAACAAGAATCATAAAAATAAACC 57.838 33.333 0.00 0.00 0.00 3.27
516 697 9.936759 TCCCCAACAAGAATCATAAAAATAAAC 57.063 29.630 0.00 0.00 0.00 2.01
520 701 7.553760 GCAATCCCCAACAAGAATCATAAAAAT 59.446 33.333 0.00 0.00 0.00 1.82
521 702 6.878389 GCAATCCCCAACAAGAATCATAAAAA 59.122 34.615 0.00 0.00 0.00 1.94
522 703 6.013898 TGCAATCCCCAACAAGAATCATAAAA 60.014 34.615 0.00 0.00 0.00 1.52
523 704 5.483231 TGCAATCCCCAACAAGAATCATAAA 59.517 36.000 0.00 0.00 0.00 1.40
526 707 3.443052 TGCAATCCCCAACAAGAATCAT 58.557 40.909 0.00 0.00 0.00 2.45
584 774 1.673009 GACAAATCCCCGCCGTGAA 60.673 57.895 0.00 0.00 0.00 3.18
610 800 2.370189 GAGAGAGAGAGAGAGAGAGGGG 59.630 59.091 0.00 0.00 0.00 4.79
612 802 3.963374 TGAGAGAGAGAGAGAGAGAGAGG 59.037 52.174 0.00 0.00 0.00 3.69
614 804 3.706594 GGTGAGAGAGAGAGAGAGAGAGA 59.293 52.174 0.00 0.00 0.00 3.10
615 805 3.452264 TGGTGAGAGAGAGAGAGAGAGAG 59.548 52.174 0.00 0.00 0.00 3.20
616 806 3.449918 TGGTGAGAGAGAGAGAGAGAGA 58.550 50.000 0.00 0.00 0.00 3.10
617 807 3.912496 TGGTGAGAGAGAGAGAGAGAG 57.088 52.381 0.00 0.00 0.00 3.20
618 808 3.779738 TGATGGTGAGAGAGAGAGAGAGA 59.220 47.826 0.00 0.00 0.00 3.10
624 814 1.774110 GGCTGATGGTGAGAGAGAGA 58.226 55.000 0.00 0.00 0.00 3.10
630 820 1.830587 AAGTGCGGCTGATGGTGAGA 61.831 55.000 0.00 0.00 0.00 3.27
636 826 1.269206 ACAAACAAAGTGCGGCTGATG 60.269 47.619 0.00 0.00 0.00 3.07
647 837 5.276820 GGCGAAATCCAAGAAACAAACAAAG 60.277 40.000 0.00 0.00 0.00 2.77
659 849 3.518068 GGGCGGGCGAAATCCAAG 61.518 66.667 0.00 0.00 0.00 3.61
668 858 4.496927 GATTTTGCAGGGCGGGCG 62.497 66.667 0.00 0.00 0.00 6.13
669 859 4.147449 GGATTTTGCAGGGCGGGC 62.147 66.667 0.00 0.00 0.00 6.13
670 860 2.679642 TGGATTTTGCAGGGCGGG 60.680 61.111 0.00 0.00 0.00 6.13
671 861 2.887360 CTGGATTTTGCAGGGCGG 59.113 61.111 0.00 0.00 31.71 6.13
672 862 2.182537 GCTGGATTTTGCAGGGCG 59.817 61.111 0.00 0.00 36.25 6.13
673 863 1.953231 GAGGCTGGATTTTGCAGGGC 61.953 60.000 0.00 0.00 36.25 5.19
674 864 1.660560 CGAGGCTGGATTTTGCAGGG 61.661 60.000 0.00 0.00 36.25 4.45
675 865 1.660560 CCGAGGCTGGATTTTGCAGG 61.661 60.000 0.00 0.00 36.25 4.85
676 866 1.805254 CCGAGGCTGGATTTTGCAG 59.195 57.895 0.00 0.00 38.97 4.41
677 867 2.342650 GCCGAGGCTGGATTTTGCA 61.343 57.895 6.90 0.00 38.26 4.08
701 891 2.134789 AGCAGCCCTACCAAATCAAG 57.865 50.000 0.00 0.00 0.00 3.02
704 894 1.751351 GGAAAGCAGCCCTACCAAATC 59.249 52.381 0.00 0.00 0.00 2.17
713 903 0.323725 TGGATGAAGGAAAGCAGCCC 60.324 55.000 0.00 0.00 39.75 5.19
728 925 1.069765 CTATCGGCTTGCGGTGGAT 59.930 57.895 0.39 0.00 0.00 3.41
735 932 2.854185 GCAAAATGAACTATCGGCTTGC 59.146 45.455 0.00 0.00 32.36 4.01
737 934 3.356290 AGGCAAAATGAACTATCGGCTT 58.644 40.909 0.00 0.00 0.00 4.35
745 942 3.181429 TGGGAGAGAAGGCAAAATGAACT 60.181 43.478 0.00 0.00 0.00 3.01
746 943 3.057245 GTGGGAGAGAAGGCAAAATGAAC 60.057 47.826 0.00 0.00 0.00 3.18
749 946 1.821136 GGTGGGAGAGAAGGCAAAATG 59.179 52.381 0.00 0.00 0.00 2.32
750 947 1.614317 CGGTGGGAGAGAAGGCAAAAT 60.614 52.381 0.00 0.00 0.00 1.82
751 948 0.250727 CGGTGGGAGAGAAGGCAAAA 60.251 55.000 0.00 0.00 0.00 2.44
752 949 1.374947 CGGTGGGAGAGAAGGCAAA 59.625 57.895 0.00 0.00 0.00 3.68
755 952 4.475135 GGCGGTGGGAGAGAAGGC 62.475 72.222 0.00 0.00 0.00 4.35
756 953 4.148825 CGGCGGTGGGAGAGAAGG 62.149 72.222 0.00 0.00 0.00 3.46
757 954 2.356818 GATCGGCGGTGGGAGAGAAG 62.357 65.000 7.21 0.00 0.00 2.85
758 955 2.363795 ATCGGCGGTGGGAGAGAA 60.364 61.111 7.21 0.00 0.00 2.87
759 956 2.833582 GATCGGCGGTGGGAGAGA 60.834 66.667 7.21 0.00 0.00 3.10
760 957 2.835431 AGATCGGCGGTGGGAGAG 60.835 66.667 7.21 0.00 0.00 3.20
799 996 1.333524 GCGTCCAATTCTCATGCATCG 60.334 52.381 0.00 0.00 0.00 3.84
803 1000 0.659957 GAGGCGTCCAATTCTCATGC 59.340 55.000 0.00 0.00 0.00 4.06
804 1001 0.933097 CGAGGCGTCCAATTCTCATG 59.067 55.000 0.00 0.00 0.00 3.07
829 1027 3.278668 AAGAGATGTGAGAGGCAATGG 57.721 47.619 0.00 0.00 0.00 3.16
831 1029 4.564782 TGAAAGAGATGTGAGAGGCAAT 57.435 40.909 0.00 0.00 0.00 3.56
881 1091 2.871096 TTACTGGGGTAAACTGCCAG 57.129 50.000 0.00 0.00 35.29 4.85
897 1107 6.979238 AGACGGATGCAGAGTTTAGTTATTAC 59.021 38.462 0.00 0.00 0.00 1.89
899 1109 5.812642 CAGACGGATGCAGAGTTTAGTTATT 59.187 40.000 0.00 0.00 0.00 1.40
900 1110 5.105310 ACAGACGGATGCAGAGTTTAGTTAT 60.105 40.000 0.00 0.00 0.00 1.89
922 1134 0.179009 AAAGCAGAGCAGAGCCAACA 60.179 50.000 0.00 0.00 0.00 3.33
942 1154 2.200067 CTCAGCTTACCGATCTGCAAG 58.800 52.381 0.00 0.00 0.00 4.01
952 1164 2.074729 TCCTCCTAGCTCAGCTTACC 57.925 55.000 3.31 0.00 40.44 2.85
958 1170 0.544120 GGGGGATCCTCCTAGCTCAG 60.544 65.000 24.85 0.00 36.57 3.35
988 1223 3.620785 GGCCATCGATCCTCGGCT 61.621 66.667 20.24 0.00 44.27 5.52
1086 1321 7.119262 GTGGTTCGTAGTAGTACTACCTTGTAA 59.881 40.741 27.24 13.36 46.27 2.41
1096 1331 3.067320 GGGATGGTGGTTCGTAGTAGTAC 59.933 52.174 0.00 0.00 0.00 2.73
1109 1350 1.118838 GAGACAGAGAGGGATGGTGG 58.881 60.000 0.00 0.00 0.00 4.61
1111 1352 2.465813 CAAGAGACAGAGAGGGATGGT 58.534 52.381 0.00 0.00 0.00 3.55
1308 1550 4.964593 TGTCCTTCAGTAAAAGGGTACAC 58.035 43.478 3.01 0.00 45.03 2.90
1310 1552 5.370679 TGTTGTCCTTCAGTAAAAGGGTAC 58.629 41.667 3.01 0.00 45.03 3.34
1311 1553 5.617252 CTGTTGTCCTTCAGTAAAAGGGTA 58.383 41.667 3.01 0.00 45.03 3.69
1313 1555 3.253432 GCTGTTGTCCTTCAGTAAAAGGG 59.747 47.826 3.01 0.00 45.03 3.95
1315 1557 5.757850 AAGCTGTTGTCCTTCAGTAAAAG 57.242 39.130 0.00 0.00 34.57 2.27
1344 1586 1.066215 CATGATCAGAACCGTGGTGGA 60.066 52.381 0.09 0.00 42.00 4.02
1352 1594 2.681848 CAGGAAGCACATGATCAGAACC 59.318 50.000 0.00 0.00 31.40 3.62
1382 1624 5.939883 CCCGGAATTAAGATGCATGAAGATA 59.060 40.000 2.46 0.00 0.00 1.98
1496 1738 6.680148 TCCATCCATGAATACGAGGAAATA 57.320 37.500 0.00 0.00 33.17 1.40
1500 1742 3.071023 GGTTCCATCCATGAATACGAGGA 59.929 47.826 0.00 0.00 34.12 3.71
1501 1743 3.071602 AGGTTCCATCCATGAATACGAGG 59.928 47.826 0.00 0.00 0.00 4.63
1503 1745 5.046591 GGATAGGTTCCATCCATGAATACGA 60.047 44.000 0.00 0.00 44.74 3.43
1504 1746 5.178797 GGATAGGTTCCATCCATGAATACG 58.821 45.833 0.00 0.00 44.74 3.06
1517 1759 2.790433 TGCACAAACTGGATAGGTTCC 58.210 47.619 0.00 0.00 45.69 3.62
1518 1760 5.183904 AGAATTGCACAAACTGGATAGGTTC 59.816 40.000 0.00 0.00 29.30 3.62
1519 1761 5.079643 AGAATTGCACAAACTGGATAGGTT 58.920 37.500 0.00 0.00 32.95 3.50
1520 1762 4.666512 AGAATTGCACAAACTGGATAGGT 58.333 39.130 0.00 0.00 0.00 3.08
1521 1763 4.096984 GGAGAATTGCACAAACTGGATAGG 59.903 45.833 0.00 0.00 0.00 2.57
1522 1764 4.701651 TGGAGAATTGCACAAACTGGATAG 59.298 41.667 0.00 0.00 0.00 2.08
1523 1765 4.661222 TGGAGAATTGCACAAACTGGATA 58.339 39.130 0.00 0.00 0.00 2.59
1524 1766 3.499338 TGGAGAATTGCACAAACTGGAT 58.501 40.909 0.00 0.00 0.00 3.41
1525 1767 2.942804 TGGAGAATTGCACAAACTGGA 58.057 42.857 0.00 0.00 0.00 3.86
1526 1768 3.581755 CATGGAGAATTGCACAAACTGG 58.418 45.455 0.00 0.00 0.00 4.00
1527 1769 3.006110 ACCATGGAGAATTGCACAAACTG 59.994 43.478 21.47 0.00 0.00 3.16
1528 1770 3.006110 CACCATGGAGAATTGCACAAACT 59.994 43.478 21.47 0.00 0.00 2.66
1529 1771 3.243839 ACACCATGGAGAATTGCACAAAC 60.244 43.478 21.47 0.00 0.00 2.93
1530 1772 2.964464 ACACCATGGAGAATTGCACAAA 59.036 40.909 21.47 0.00 0.00 2.83
1531 1773 2.557924 GACACCATGGAGAATTGCACAA 59.442 45.455 21.47 0.00 0.00 3.33
1532 1774 2.161855 GACACCATGGAGAATTGCACA 58.838 47.619 21.47 0.00 0.00 4.57
1533 1775 1.131126 CGACACCATGGAGAATTGCAC 59.869 52.381 21.47 3.13 0.00 4.57
1534 1776 1.271325 ACGACACCATGGAGAATTGCA 60.271 47.619 21.47 0.00 0.00 4.08
1535 1777 1.453155 ACGACACCATGGAGAATTGC 58.547 50.000 21.47 1.49 0.00 3.56
1536 1778 4.503741 AAAACGACACCATGGAGAATTG 57.496 40.909 21.47 8.39 0.00 2.32
1537 1779 4.457949 GGTAAAACGACACCATGGAGAATT 59.542 41.667 21.47 5.17 34.77 2.17
1538 1780 4.007659 GGTAAAACGACACCATGGAGAAT 58.992 43.478 21.47 0.00 34.77 2.40
1539 1781 3.404899 GGTAAAACGACACCATGGAGAA 58.595 45.455 21.47 0.00 34.77 2.87
1540 1782 2.289819 GGGTAAAACGACACCATGGAGA 60.290 50.000 21.47 0.00 36.48 3.71
1541 1783 2.081462 GGGTAAAACGACACCATGGAG 58.919 52.381 21.47 14.24 36.48 3.86
1542 1784 1.608542 CGGGTAAAACGACACCATGGA 60.609 52.381 21.47 0.00 36.48 3.41
1543 1785 0.800012 CGGGTAAAACGACACCATGG 59.200 55.000 11.19 11.19 36.48 3.66
1544 1786 0.800012 CCGGGTAAAACGACACCATG 59.200 55.000 0.00 0.00 36.48 3.66
1545 1787 0.686224 TCCGGGTAAAACGACACCAT 59.314 50.000 0.00 0.00 36.48 3.55
1546 1788 0.467384 TTCCGGGTAAAACGACACCA 59.533 50.000 0.00 0.00 36.48 4.17
1547 1789 1.592064 TTTCCGGGTAAAACGACACC 58.408 50.000 0.00 0.00 0.00 4.16
1548 1790 3.250521 TGAATTTCCGGGTAAAACGACAC 59.749 43.478 0.00 0.00 0.00 3.67
1549 1791 3.474600 TGAATTTCCGGGTAAAACGACA 58.525 40.909 0.00 0.00 0.00 4.35
1550 1792 3.747529 TCTGAATTTCCGGGTAAAACGAC 59.252 43.478 0.00 0.00 0.00 4.34
1551 1793 4.005487 TCTGAATTTCCGGGTAAAACGA 57.995 40.909 0.00 0.00 0.00 3.85
1552 1794 4.957759 ATCTGAATTTCCGGGTAAAACG 57.042 40.909 0.00 0.00 0.00 3.60
1553 1795 6.020971 ACAATCTGAATTTCCGGGTAAAAC 57.979 37.500 0.00 0.00 0.00 2.43
1554 1796 6.451393 CAACAATCTGAATTTCCGGGTAAAA 58.549 36.000 0.00 0.00 0.00 1.52
1555 1797 5.565834 GCAACAATCTGAATTTCCGGGTAAA 60.566 40.000 0.00 0.00 0.00 2.01
1556 1798 4.082463 GCAACAATCTGAATTTCCGGGTAA 60.082 41.667 0.00 0.00 0.00 2.85
1557 1799 3.442273 GCAACAATCTGAATTTCCGGGTA 59.558 43.478 0.00 0.00 0.00 3.69
1558 1800 2.231235 GCAACAATCTGAATTTCCGGGT 59.769 45.455 0.00 0.00 0.00 5.28
1559 1801 2.493278 AGCAACAATCTGAATTTCCGGG 59.507 45.455 0.00 0.00 0.00 5.73
1560 1802 3.855689 AGCAACAATCTGAATTTCCGG 57.144 42.857 0.00 0.00 0.00 5.14
1561 1803 4.855388 CAGAAGCAACAATCTGAATTTCCG 59.145 41.667 0.00 0.00 44.64 4.30
1562 1804 5.776744 ACAGAAGCAACAATCTGAATTTCC 58.223 37.500 9.56 0.00 44.64 3.13
1563 1805 6.441274 TGACAGAAGCAACAATCTGAATTTC 58.559 36.000 9.56 0.00 44.64 2.17
1564 1806 6.040166 ACTGACAGAAGCAACAATCTGAATTT 59.960 34.615 10.08 0.00 44.64 1.82
1565 1807 5.533903 ACTGACAGAAGCAACAATCTGAATT 59.466 36.000 10.08 0.00 44.64 2.17
1566 1808 5.068636 ACTGACAGAAGCAACAATCTGAAT 58.931 37.500 10.08 0.00 44.64 2.57
1567 1809 4.454678 ACTGACAGAAGCAACAATCTGAA 58.545 39.130 10.08 0.00 44.64 3.02
1568 1810 4.077300 ACTGACAGAAGCAACAATCTGA 57.923 40.909 10.08 0.00 44.64 3.27
1569 1811 7.783090 ATATACTGACAGAAGCAACAATCTG 57.217 36.000 10.08 1.46 46.69 2.90
1572 1814 9.429359 GCTATATATACTGACAGAAGCAACAAT 57.571 33.333 10.08 0.00 0.00 2.71
1573 1815 8.421002 TGCTATATATACTGACAGAAGCAACAA 58.579 33.333 10.08 0.00 34.75 2.83
1574 1816 7.867909 GTGCTATATATACTGACAGAAGCAACA 59.132 37.037 10.08 0.00 38.98 3.33
1575 1817 8.085296 AGTGCTATATATACTGACAGAAGCAAC 58.915 37.037 10.08 7.16 38.98 4.17
1576 1818 8.183104 AGTGCTATATATACTGACAGAAGCAA 57.817 34.615 10.08 0.00 38.98 3.91
1577 1819 7.767250 AGTGCTATATATACTGACAGAAGCA 57.233 36.000 10.08 8.96 35.26 3.91
1578 1820 7.757624 GGAAGTGCTATATATACTGACAGAAGC 59.242 40.741 10.08 6.68 0.00 3.86
1579 1821 8.797438 TGGAAGTGCTATATATACTGACAGAAG 58.203 37.037 10.08 0.00 0.00 2.85
1580 1822 8.706322 TGGAAGTGCTATATATACTGACAGAA 57.294 34.615 10.08 0.00 0.00 3.02
1581 1823 8.885693 ATGGAAGTGCTATATATACTGACAGA 57.114 34.615 10.08 0.00 0.00 3.41
1590 1832 8.551440 TGCTTGGATAATGGAAGTGCTATATAT 58.449 33.333 0.00 0.00 0.00 0.86
1591 1833 7.917003 TGCTTGGATAATGGAAGTGCTATATA 58.083 34.615 0.00 0.00 0.00 0.86
1592 1834 6.782986 TGCTTGGATAATGGAAGTGCTATAT 58.217 36.000 0.00 0.00 0.00 0.86
1593 1835 6.186420 TGCTTGGATAATGGAAGTGCTATA 57.814 37.500 0.00 0.00 0.00 1.31
1594 1836 5.052693 TGCTTGGATAATGGAAGTGCTAT 57.947 39.130 0.00 0.00 0.00 2.97
1595 1837 4.502105 TGCTTGGATAATGGAAGTGCTA 57.498 40.909 0.00 0.00 0.00 3.49
1596 1838 3.370840 TGCTTGGATAATGGAAGTGCT 57.629 42.857 0.00 0.00 0.00 4.40
1597 1839 4.454728 TTTGCTTGGATAATGGAAGTGC 57.545 40.909 0.00 0.00 0.00 4.40
1598 1840 6.211587 TCATTTGCTTGGATAATGGAAGTG 57.788 37.500 0.00 0.00 31.74 3.16
1599 1841 6.381994 ACATCATTTGCTTGGATAATGGAAGT 59.618 34.615 0.00 0.00 31.74 3.01
1600 1842 6.812998 ACATCATTTGCTTGGATAATGGAAG 58.187 36.000 0.00 0.00 31.74 3.46
1601 1843 6.608405 AGACATCATTTGCTTGGATAATGGAA 59.392 34.615 0.00 0.00 31.74 3.53
1602 1844 6.040054 CAGACATCATTTGCTTGGATAATGGA 59.960 38.462 0.00 0.00 31.74 3.41
1603 1845 6.183360 ACAGACATCATTTGCTTGGATAATGG 60.183 38.462 0.00 0.00 31.74 3.16
1628 1870 4.101898 TCACCCTGACAGTAGCAAGTAAAA 59.898 41.667 0.93 0.00 0.00 1.52
1630 1872 3.236047 TCACCCTGACAGTAGCAAGTAA 58.764 45.455 0.93 0.00 0.00 2.24
1642 1884 2.037772 AGTCACTGAACATCACCCTGAC 59.962 50.000 0.00 0.00 0.00 3.51
1645 1887 6.408548 CCATATTAGTCACTGAACATCACCCT 60.409 42.308 0.00 0.00 0.00 4.34
1660 1902 8.798859 ATCATAAGCACCATTCCATATTAGTC 57.201 34.615 0.00 0.00 0.00 2.59
1667 1909 4.356405 TCGATCATAAGCACCATTCCAT 57.644 40.909 0.00 0.00 0.00 3.41
1697 1943 2.666619 GCAACCTGATGAAGCAGAAACG 60.667 50.000 0.00 0.00 38.14 3.60
1698 1944 2.294233 TGCAACCTGATGAAGCAGAAAC 59.706 45.455 0.00 0.00 38.14 2.78
1699 1945 2.294233 GTGCAACCTGATGAAGCAGAAA 59.706 45.455 0.00 0.00 38.14 2.52
1702 1948 1.199327 CAGTGCAACCTGATGAAGCAG 59.801 52.381 0.00 0.00 37.80 4.24
1703 1949 1.202794 TCAGTGCAACCTGATGAAGCA 60.203 47.619 3.01 0.00 36.57 3.91
1704 1950 1.527034 TCAGTGCAACCTGATGAAGC 58.473 50.000 3.01 0.00 36.57 3.86
1705 1951 3.188048 GTCTTCAGTGCAACCTGATGAAG 59.812 47.826 18.63 15.66 43.25 3.02
1797 2049 0.891373 GCATCTGGCCGCTAGATCTA 59.109 55.000 15.81 1.69 32.75 1.98
1845 2097 1.134560 CAACTAGTACCGTCAGGGCTC 59.865 57.143 0.00 0.00 43.47 4.70
1931 2185 3.548818 GCAAACACAACATGTCAGGAGAC 60.549 47.826 0.00 0.00 42.31 3.36
2086 2344 6.048732 ACCAAACCAATATTTGTTCCCATC 57.951 37.500 5.46 0.00 37.79 3.51
2087 2345 5.045942 GGACCAAACCAATATTTGTTCCCAT 60.046 40.000 5.46 0.00 42.42 4.00
2091 2356 8.091449 TGTTATGGACCAAACCAATATTTGTTC 58.909 33.333 0.00 0.00 43.47 3.18
2122 2408 6.491062 CCCTGCAGATAATGGATATCACAAAA 59.509 38.462 17.39 0.00 42.52 2.44
2132 2421 2.419990 CGTGTTCCCTGCAGATAATGGA 60.420 50.000 17.39 10.14 0.00 3.41
2134 2423 2.868583 CTCGTGTTCCCTGCAGATAATG 59.131 50.000 17.39 0.00 0.00 1.90
2248 2537 1.595609 CGATTCACTTTGCGCAGAAC 58.404 50.000 11.31 5.13 0.00 3.01
2299 2588 1.960689 ACGGTAAGCAATGCAGGTTTT 59.039 42.857 8.35 0.00 0.00 2.43
2303 2592 1.164411 TCAACGGTAAGCAATGCAGG 58.836 50.000 8.35 0.00 0.00 4.85
2330 2619 1.861542 CGACCCATGCGGCTGAAAAA 61.862 55.000 0.00 0.00 33.26 1.94
2349 2638 7.661437 TGCTGGATTATGGTGTTATAAGATGAC 59.339 37.037 0.00 0.00 0.00 3.06
2394 2683 7.381766 TCACTGTTCATAAATGTTCTGGATG 57.618 36.000 0.00 0.00 0.00 3.51
2397 2686 7.206981 AGTTCACTGTTCATAAATGTTCTGG 57.793 36.000 0.00 0.00 0.00 3.86
2482 2771 4.277476 CTGTCTGGATCCTAACACTCTCT 58.723 47.826 14.23 0.00 0.00 3.10
2618 2909 4.801147 GCATATCGAAGAACTGCATTGA 57.199 40.909 0.00 0.00 44.13 2.57
2641 2932 0.314302 CCCTAATAGCGTCGTCCCTG 59.686 60.000 0.00 0.00 0.00 4.45
2737 3030 4.938226 TGTTGTGGAAAACCAATTCAAACC 59.062 37.500 0.00 0.00 0.00 3.27
2841 3134 6.922957 GCCCAATATGTATGGTTTTACATGTG 59.077 38.462 9.11 5.63 41.65 3.21
2889 3182 1.606668 GATGCGAACCAAACCTGTTCA 59.393 47.619 0.00 0.00 41.70 3.18
2927 3220 6.534793 ACAAACATGAGAACAACAATGGAAAC 59.465 34.615 0.00 0.00 0.00 2.78
2944 3237 5.801947 GGCTATCAGCAAGTTTACAAACATG 59.198 40.000 7.53 6.65 44.75 3.21
3091 3387 5.918608 ACTAGCTGAACTGTGAGAGAAAAA 58.081 37.500 0.00 0.00 0.00 1.94
3095 3391 6.654959 AGTATACTAGCTGAACTGTGAGAGA 58.345 40.000 2.75 0.00 0.00 3.10
3096 3392 6.935741 AGTATACTAGCTGAACTGTGAGAG 57.064 41.667 2.75 0.00 0.00 3.20
3138 3520 9.793259 TTACTTTAGTCTTCCATCACATCTTTT 57.207 29.630 0.00 0.00 0.00 2.27
3142 3524 9.436957 TTTCTTACTTTAGTCTTCCATCACATC 57.563 33.333 0.00 0.00 0.00 3.06
3172 3554 0.104120 AAAGCTCCGTTTTGCAACCC 59.896 50.000 0.00 0.00 0.00 4.11
3173 3555 1.487482 GAAAGCTCCGTTTTGCAACC 58.513 50.000 0.00 0.00 0.00 3.77
3201 3583 1.995376 AAAGGTCCACATGGTCAACC 58.005 50.000 0.00 0.00 36.34 3.77
3211 3593 6.512297 ACAAACAATGACAATAAAGGTCCAC 58.488 36.000 0.00 0.00 34.36 4.02
3214 3596 6.981722 AGGACAAACAATGACAATAAAGGTC 58.018 36.000 0.00 0.00 35.83 3.85
3248 3630 5.013183 GCCCTAGAAATATTAGCAAGGAGGA 59.987 44.000 0.00 0.00 0.00 3.71
3249 3631 5.221925 TGCCCTAGAAATATTAGCAAGGAGG 60.222 44.000 0.00 0.00 0.00 4.30
3250 3632 5.869579 TGCCCTAGAAATATTAGCAAGGAG 58.130 41.667 0.00 1.53 0.00 3.69
3271 3653 2.414138 GCCTGCAAACAAATGAAGATGC 59.586 45.455 0.00 0.00 0.00 3.91
3337 3719 0.178858 TGGGGGTGGTGGAGTTGATA 60.179 55.000 0.00 0.00 0.00 2.15
3353 3735 2.840651 AGTTGATACTTGAGGAGGTGGG 59.159 50.000 0.00 0.00 0.00 4.61
3356 3738 5.087323 TCTGAAGTTGATACTTGAGGAGGT 58.913 41.667 5.00 0.00 43.33 3.85
3484 3866 7.443259 TTTGTTAGGCTGGTTCAGTTATAAC 57.557 36.000 7.57 7.57 33.43 1.89
3496 3878 4.201990 GCAGAGATGAATTTGTTAGGCTGG 60.202 45.833 0.00 0.00 0.00 4.85
3522 3904 1.352622 TGGTACATCCATCCCCTGCC 61.353 60.000 0.00 0.00 41.93 4.85
3537 3919 0.988832 GGATGTGTCAGGGGTTGGTA 59.011 55.000 0.00 0.00 0.00 3.25
3538 3920 1.767692 GGATGTGTCAGGGGTTGGT 59.232 57.895 0.00 0.00 0.00 3.67
3541 3923 1.983224 CTCGGATGTGTCAGGGGTT 59.017 57.895 0.00 0.00 0.00 4.11
3543 3925 1.043116 TAGCTCGGATGTGTCAGGGG 61.043 60.000 0.00 0.00 0.00 4.79
3553 3935 4.754114 GCATTCTTTTGATCTAGCTCGGAT 59.246 41.667 0.00 0.00 0.00 4.18
3627 4011 8.563949 CATTTCACACGATTAACAAATTACGAC 58.436 33.333 0.00 0.00 0.00 4.34
3642 4026 3.872182 TCTTTTTCCGACATTTCACACGA 59.128 39.130 0.00 0.00 0.00 4.35
3655 4039 4.808895 CCTGGTTTCCTTTTTCTTTTTCCG 59.191 41.667 0.00 0.00 0.00 4.30
3656 4040 4.574828 GCCTGGTTTCCTTTTTCTTTTTCC 59.425 41.667 0.00 0.00 0.00 3.13
3658 4042 4.941263 GTGCCTGGTTTCCTTTTTCTTTTT 59.059 37.500 0.00 0.00 0.00 1.94
3659 4043 4.225042 AGTGCCTGGTTTCCTTTTTCTTTT 59.775 37.500 0.00 0.00 0.00 2.27
3663 4047 4.929819 TTAGTGCCTGGTTTCCTTTTTC 57.070 40.909 0.00 0.00 0.00 2.29
3666 4050 4.653801 ACATTTTAGTGCCTGGTTTCCTTT 59.346 37.500 0.00 0.00 0.00 3.11
3670 4054 4.278419 AGACACATTTTAGTGCCTGGTTTC 59.722 41.667 0.00 0.00 43.23 2.78
3674 4058 2.095059 GCAGACACATTTTAGTGCCTGG 60.095 50.000 11.36 0.00 46.16 4.45
3692 4076 1.723003 GCAAAAAGCAAGAATCGGCAG 59.277 47.619 3.11 0.00 44.79 4.85
3861 4245 5.425630 TGATTTCAGAGACATGATCAGGTG 58.574 41.667 19.20 6.22 0.00 4.00
3902 4286 1.982395 CAGTCCACCGGCCTGTAGA 60.982 63.158 0.00 0.00 0.00 2.59
4253 4652 1.272554 GGAAGGACGGGTTGGAGGAT 61.273 60.000 0.00 0.00 0.00 3.24
4340 4739 1.006102 CGCCGGAGCATAAGGGTAG 60.006 63.158 5.05 0.00 39.83 3.18
4391 4790 2.808202 GCATCTCTACATCATGCCGGTT 60.808 50.000 1.90 0.00 37.54 4.44
4582 4989 7.537596 TCAAAAGATGTTACCATGTTTCCAT 57.462 32.000 0.00 0.00 42.02 3.41
4586 4993 7.710475 CCTGTTTCAAAAGATGTTACCATGTTT 59.290 33.333 0.00 0.00 44.00 2.83
4599 5006 8.597167 TCATCTCTATTCTCCTGTTTCAAAAGA 58.403 33.333 0.00 0.00 0.00 2.52
4600 5007 8.783833 TCATCTCTATTCTCCTGTTTCAAAAG 57.216 34.615 0.00 0.00 0.00 2.27
4601 5008 9.003658 GTTCATCTCTATTCTCCTGTTTCAAAA 57.996 33.333 0.00 0.00 0.00 2.44
4641 5049 3.156293 TGCTCTGTTGCAACCACATATT 58.844 40.909 26.14 0.00 40.29 1.28
4642 5050 2.794103 TGCTCTGTTGCAACCACATAT 58.206 42.857 26.14 0.00 40.29 1.78
4651 5059 3.282021 AGAGAAAAGTTGCTCTGTTGCA 58.718 40.909 0.41 0.00 39.86 4.08
4652 5060 3.563390 AGAGAGAAAAGTTGCTCTGTTGC 59.437 43.478 6.27 0.00 41.33 4.17
4713 5121 9.467796 CTCCTATCTCAAGGGAAAACTTTATTT 57.532 33.333 0.00 0.00 37.24 1.40
4715 5123 8.393959 TCTCCTATCTCAAGGGAAAACTTTAT 57.606 34.615 0.00 0.00 37.24 1.40
4716 5124 7.808279 TCTCCTATCTCAAGGGAAAACTTTA 57.192 36.000 0.00 0.00 37.24 1.85
4717 5125 6.704056 TCTCCTATCTCAAGGGAAAACTTT 57.296 37.500 0.00 0.00 37.24 2.66
4718 5126 6.704056 TTCTCCTATCTCAAGGGAAAACTT 57.296 37.500 0.00 0.00 37.24 2.66
4719 5127 6.502158 TCTTTCTCCTATCTCAAGGGAAAACT 59.498 38.462 0.00 0.00 36.36 2.66
4720 5128 6.712276 TCTTTCTCCTATCTCAAGGGAAAAC 58.288 40.000 0.00 0.00 36.36 2.43
4721 5129 6.952605 TCTTTCTCCTATCTCAAGGGAAAA 57.047 37.500 0.00 0.00 36.36 2.29
4723 5131 7.516450 AATTCTTTCTCCTATCTCAAGGGAA 57.484 36.000 0.00 0.00 37.24 3.97
4725 5133 8.256356 TCTAATTCTTTCTCCTATCTCAAGGG 57.744 38.462 0.00 0.00 37.24 3.95
4726 5134 9.541143 GTTCTAATTCTTTCTCCTATCTCAAGG 57.459 37.037 0.00 0.00 38.06 3.61
4729 5137 9.480861 TCAGTTCTAATTCTTTCTCCTATCTCA 57.519 33.333 0.00 0.00 0.00 3.27
4735 5143 7.967908 TCAGTTCAGTTCTAATTCTTTCTCCT 58.032 34.615 0.00 0.00 0.00 3.69
4736 5144 8.608844 TTCAGTTCAGTTCTAATTCTTTCTCC 57.391 34.615 0.00 0.00 0.00 3.71
4737 5145 9.871299 GTTTCAGTTCAGTTCTAATTCTTTCTC 57.129 33.333 0.00 0.00 0.00 2.87
4738 5146 9.620259 AGTTTCAGTTCAGTTCTAATTCTTTCT 57.380 29.630 0.00 0.00 0.00 2.52
4743 5412 8.721478 TGCATAGTTTCAGTTCAGTTCTAATTC 58.279 33.333 0.00 0.00 0.00 2.17
4746 5415 7.877612 TGATGCATAGTTTCAGTTCAGTTCTAA 59.122 33.333 0.00 0.00 0.00 2.10
4783 5452 2.099141 TCTTGCTTTGATCTGACCGG 57.901 50.000 0.00 0.00 0.00 5.28
4785 5454 2.751259 TGCATCTTGCTTTGATCTGACC 59.249 45.455 0.75 0.00 45.31 4.02
4816 5518 3.314553 CGCCTTTCGTCGGTATGATATT 58.685 45.455 0.00 0.00 0.00 1.28
4826 5528 2.730672 CTTCTGCCGCCTTTCGTCG 61.731 63.158 0.00 0.00 36.19 5.12
4885 5587 4.319549 CCATTGATGATCTCACTTGCATCG 60.320 45.833 0.00 0.00 39.88 3.84
4930 5636 2.428171 TGCCTGCTAGCAATTGGATTTC 59.572 45.455 22.21 7.54 40.56 2.17
4934 5640 0.620030 TCTGCCTGCTAGCAATTGGA 59.380 50.000 22.21 13.85 43.52 3.53
4935 5641 1.022735 CTCTGCCTGCTAGCAATTGG 58.977 55.000 19.86 17.38 43.52 3.16
4938 5644 1.138568 ATCCTCTGCCTGCTAGCAAT 58.861 50.000 19.86 3.51 43.52 3.56
4939 5645 1.793414 TATCCTCTGCCTGCTAGCAA 58.207 50.000 19.86 2.79 43.52 3.91
4967 5673 1.009675 GTGTGCCTGTTCAGTTGCG 60.010 57.895 0.00 0.00 0.00 4.85
4982 5688 6.054860 ACCTTGCTTATATCAGTGAAGTGT 57.945 37.500 0.00 0.00 0.00 3.55
4999 5705 0.675633 ATTGGTGTGCTTGACCTTGC 59.324 50.000 0.00 0.00 34.26 4.01
5080 5786 3.097877 TCTATGGTCTGCGTGCTATTG 57.902 47.619 0.00 0.00 0.00 1.90
5082 5788 3.321968 TGAATCTATGGTCTGCGTGCTAT 59.678 43.478 0.00 0.00 0.00 2.97
5083 5789 2.693074 TGAATCTATGGTCTGCGTGCTA 59.307 45.455 0.00 0.00 0.00 3.49
5085 5791 1.863454 CTGAATCTATGGTCTGCGTGC 59.137 52.381 0.00 0.00 0.00 5.34
5097 5803 4.813809 AGCTTCATCCTCTCCTGAATCTA 58.186 43.478 0.00 0.00 28.86 1.98
5100 5806 3.388676 CAGAGCTTCATCCTCTCCTGAAT 59.611 47.826 0.00 0.00 37.57 2.57
5151 5891 2.907892 TGGTTCCTCCAGATGAACTCT 58.092 47.619 13.28 0.00 41.93 3.24
5253 5993 1.584495 CATCGCCATCCCGTCGATA 59.416 57.895 0.00 0.00 40.48 2.92
5330 6070 2.806945 TTCCTGATGGAATTTCGCCT 57.193 45.000 0.00 0.00 46.57 5.52
5340 6080 5.474876 AGTTCTTGTAGCTTTTTCCTGATGG 59.525 40.000 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.