Multiple sequence alignment - TraesCS6D01G353700

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G353700 chr6D 100.000 7874 0 0 1 7874 449246488 449254361 0.000000e+00 14541.0
1 TraesCS6D01G353700 chr6D 86.796 1598 126 21 1439 2976 361486567 361484995 0.000000e+00 1703.0
2 TraesCS6D01G353700 chr6D 86.662 1597 134 26 1433 2973 346560073 346561646 0.000000e+00 1696.0
3 TraesCS6D01G353700 chr6D 85.797 1563 152 34 3044 4552 449219721 449218175 0.000000e+00 1592.0
4 TraesCS6D01G353700 chr6D 86.549 1420 113 23 1519 2867 25284336 25285748 0.000000e+00 1493.0
5 TraesCS6D01G353700 chr6D 88.930 804 74 11 4924 5721 449187462 449186668 0.000000e+00 977.0
6 TraesCS6D01G353700 chr6D 91.351 659 57 0 4948 5606 449217739 449217081 0.000000e+00 902.0
7 TraesCS6D01G353700 chr6D 86.618 822 74 21 6291 7097 449186275 449185475 0.000000e+00 876.0
8 TraesCS6D01G353700 chr6D 77.701 1305 193 49 1403 2639 226019517 226018243 0.000000e+00 708.0
9 TraesCS6D01G353700 chr6D 78.046 788 89 49 3267 4004 449188833 449188080 3.400000e-113 420.0
10 TraesCS6D01G353700 chr6D 80.409 587 66 13 1439 1980 427758264 427757682 1.230000e-107 401.0
11 TraesCS6D01G353700 chr6D 90.458 262 20 4 6640 6897 449216587 449216327 2.720000e-89 340.0
12 TraesCS6D01G353700 chr6D 82.651 415 41 5 1439 1822 80474080 80473666 9.790000e-89 339.0
13 TraesCS6D01G353700 chr6D 89.057 265 28 1 7532 7796 448920952 448920689 2.120000e-85 327.0
14 TraesCS6D01G353700 chr6D 86.301 292 38 2 7507 7796 449157632 449157341 4.590000e-82 316.0
15 TraesCS6D01G353700 chr6D 87.594 266 29 3 7533 7796 449282063 449282326 9.930000e-79 305.0
16 TraesCS6D01G353700 chr6D 89.407 236 9 8 880 1103 449221480 449221249 4.650000e-72 283.0
17 TraesCS6D01G353700 chr6D 88.462 234 22 5 6297 6529 449216847 449216618 2.160000e-70 278.0
18 TraesCS6D01G353700 chr6D 99.333 150 1 0 954 1103 449189511 449189362 1.010000e-68 272.0
19 TraesCS6D01G353700 chr6D 85.020 247 22 12 4690 4925 386217942 386218184 3.670000e-58 237.0
20 TraesCS6D01G353700 chr6D 80.272 294 32 13 1106 1387 449189049 449188770 1.730000e-46 198.0
21 TraesCS6D01G353700 chr6D 85.034 147 11 3 819 955 449189689 449189544 1.070000e-28 139.0
22 TraesCS6D01G353700 chr6D 92.405 79 6 0 709 787 449247120 449247198 6.460000e-21 113.0
23 TraesCS6D01G353700 chr6D 92.405 79 6 0 633 711 449247196 449247274 6.460000e-21 113.0
24 TraesCS6D01G353700 chr6D 92.105 76 6 0 2979 3054 81895566 81895641 3.000000e-19 108.0
25 TraesCS6D01G353700 chr6D 93.056 72 5 0 2973 3044 161144826 161144897 1.080000e-18 106.0
26 TraesCS6D01G353700 chr6D 90.000 80 8 0 2973 3052 27532747 27532826 3.890000e-18 104.0
27 TraesCS6D01G353700 chr6D 85.870 92 9 4 4583 4672 433403248 433403337 2.340000e-15 95.3
28 TraesCS6D01G353700 chr6B 92.022 2344 132 30 4685 6999 680811734 680814051 0.000000e+00 3241.0
29 TraesCS6D01G353700 chr6B 92.549 1691 72 16 3041 4694 680810002 680811675 0.000000e+00 2375.0
30 TraesCS6D01G353700 chr6B 88.280 785 78 7 4924 5700 680860951 680861729 0.000000e+00 928.0
31 TraesCS6D01G353700 chr6B 90.688 698 60 5 4936 5631 680778914 680778220 0.000000e+00 924.0
32 TraesCS6D01G353700 chr6B 93.904 607 37 0 2 608 40444970 40444364 0.000000e+00 917.0
33 TraesCS6D01G353700 chr6B 93.904 607 37 0 2 608 137414069 137414675 0.000000e+00 917.0
34 TraesCS6D01G353700 chr6B 93.904 607 37 0 2 608 155750159 155750765 0.000000e+00 917.0
35 TraesCS6D01G353700 chr6B 84.874 833 79 29 6284 7097 680862151 680862955 0.000000e+00 797.0
36 TraesCS6D01G353700 chr6B 90.619 565 43 5 6310 6874 680778085 680777531 0.000000e+00 741.0
37 TraesCS6D01G353700 chr6B 92.188 384 16 6 721 1102 680808906 680809277 1.500000e-146 531.0
38 TraesCS6D01G353700 chr6B 86.570 484 49 7 6981 7456 680815609 680816084 3.260000e-143 520.0
39 TraesCS6D01G353700 chr6B 81.113 593 64 24 4011 4578 680779493 680778924 1.570000e-116 431.0
40 TraesCS6D01G353700 chr6B 83.614 415 50 12 3601 4004 680859441 680859848 2.680000e-99 374.0
41 TraesCS6D01G353700 chr6B 94.475 181 6 2 1215 1391 680809788 680809968 7.780000e-70 276.0
42 TraesCS6D01G353700 chr6B 96.000 150 6 0 954 1103 680781842 680781693 2.190000e-60 244.0
43 TraesCS6D01G353700 chr6B 93.007 143 6 3 962 1104 680858392 680858530 1.040000e-48 206.0
44 TraesCS6D01G353700 chr6B 84.951 206 26 3 4725 4925 491595030 491595235 3.730000e-48 204.0
45 TraesCS6D01G353700 chr6B 83.425 181 23 5 4398 4578 680860780 680860953 2.270000e-35 161.0
46 TraesCS6D01G353700 chr6B 87.879 132 6 2 1104 1230 680809644 680809770 6.370000e-31 147.0
47 TraesCS6D01G353700 chr6B 83.217 143 6 5 616 758 680808883 680809007 1.800000e-21 115.0
48 TraesCS6D01G353700 chr6B 92.453 53 2 2 4686 4737 29596661 29596610 3.050000e-09 75.0
49 TraesCS6D01G353700 chr6B 87.931 58 2 5 4685 4738 655252532 655252588 6.600000e-06 63.9
50 TraesCS6D01G353700 chr6B 100.000 29 0 0 4616 4644 28112599 28112627 4.000000e-03 54.7
51 TraesCS6D01G353700 chr6B 96.875 32 1 0 651 682 680808976 680809007 4.000000e-03 54.7
52 TraesCS6D01G353700 chr2D 91.137 1478 103 12 1521 2976 601701958 601703429 0.000000e+00 1978.0
53 TraesCS6D01G353700 chr2D 85.147 1636 135 39 1403 2976 343158390 343159979 0.000000e+00 1576.0
54 TraesCS6D01G353700 chr2D 82.964 1491 168 46 1442 2859 380582520 380581043 0.000000e+00 1267.0
55 TraesCS6D01G353700 chr2D 79.514 1235 208 29 1651 2859 641566976 641565761 0.000000e+00 837.0
56 TraesCS6D01G353700 chr2D 88.608 79 9 0 2979 3057 647842440 647842362 6.500000e-16 97.1
57 TraesCS6D01G353700 chr2D 93.333 45 1 2 4433 4476 372324241 372324284 1.830000e-06 65.8
58 TraesCS6D01G353700 chr2D 100.000 29 0 0 4332 4360 3028049 3028077 4.000000e-03 54.7
59 TraesCS6D01G353700 chr7D 90.090 1443 88 13 1521 2910 3375452 3376892 0.000000e+00 1821.0
60 TraesCS6D01G353700 chr7D 82.222 1350 165 42 1661 2971 221823081 221821768 0.000000e+00 1094.0
61 TraesCS6D01G353700 chr7D 88.571 700 79 1 4929 5628 419767416 419768114 0.000000e+00 848.0
62 TraesCS6D01G353700 chr7D 87.006 708 88 2 4924 5628 487739081 487739787 0.000000e+00 795.0
63 TraesCS6D01G353700 chr7D 82.893 643 64 13 1439 2038 30825900 30826539 3.230000e-148 536.0
64 TraesCS6D01G353700 chr7D 85.393 534 43 16 6327 6859 487739839 487740338 9.050000e-144 521.0
65 TraesCS6D01G353700 chr7D 93.548 217 14 0 6643 6859 419768454 419768670 2.740000e-84 324.0
66 TraesCS6D01G353700 chr7D 91.477 176 15 0 6318 6493 419768190 419768365 7.890000e-60 243.0
67 TraesCS6D01G353700 chr7D 84.848 198 28 2 4729 4926 62232400 62232205 1.730000e-46 198.0
68 TraesCS6D01G353700 chr7D 84.848 198 28 2 4729 4926 62255295 62255100 1.730000e-46 198.0
69 TraesCS6D01G353700 chr7D 83.258 221 27 7 4713 4924 591096947 591097166 2.240000e-45 195.0
70 TraesCS6D01G353700 chr7D 88.235 119 5 1 995 1104 487738043 487738161 4.960000e-27 134.0
71 TraesCS6D01G353700 chr7D 93.421 76 5 0 2973 3048 168567613 168567538 6.460000e-21 113.0
72 TraesCS6D01G353700 chr7D 92.208 77 6 0 2971 3047 426190452 426190376 8.350000e-20 110.0
73 TraesCS6D01G353700 chr7D 85.714 105 6 7 4583 4683 62233938 62233839 1.400000e-17 102.0
74 TraesCS6D01G353700 chr7D 85.714 105 6 7 4583 4683 62256835 62256736 1.400000e-17 102.0
75 TraesCS6D01G353700 chr3D 88.166 1521 114 30 1516 2974 608185308 608183792 0.000000e+00 1751.0
76 TraesCS6D01G353700 chr3D 94.667 75 3 1 2979 3052 515170323 515170249 1.800000e-21 115.0
77 TraesCS6D01G353700 chr2A 87.213 1525 126 30 1439 2908 470655932 470657442 0.000000e+00 1672.0
78 TraesCS6D01G353700 chr2A 83.036 112 13 5 2938 3049 31673103 31672998 6.500000e-16 97.1
79 TraesCS6D01G353700 chr1D 86.466 1596 126 35 1439 2976 204794925 204793362 0.000000e+00 1668.0
80 TraesCS6D01G353700 chr1D 85.741 1613 148 34 1439 2976 107651691 107653296 0.000000e+00 1629.0
81 TraesCS6D01G353700 chr1D 86.227 1561 139 21 1485 2976 396324785 396326338 0.000000e+00 1622.0
82 TraesCS6D01G353700 chr1D 84.160 1471 166 39 1526 2969 400966311 400967741 0.000000e+00 1363.0
83 TraesCS6D01G353700 chr1D 82.172 1593 195 42 1439 2976 215005548 215003990 0.000000e+00 1286.0
84 TraesCS6D01G353700 chr1D 80.019 1066 176 22 1657 2697 449648717 449649770 0.000000e+00 754.0
85 TraesCS6D01G353700 chr1D 79.045 754 99 25 1439 2141 486887573 486888318 5.570000e-126 462.0
86 TraesCS6D01G353700 chr1D 84.536 194 30 0 4728 4921 14688209 14688016 8.060000e-45 193.0
87 TraesCS6D01G353700 chr1D 81.443 194 34 2 4724 4916 382751128 382751320 2.940000e-34 158.0
88 TraesCS6D01G353700 chr1D 77.626 219 43 4 4713 4926 288839707 288839490 2.310000e-25 128.0
89 TraesCS6D01G353700 chr1D 77.169 219 36 8 4728 4941 479807597 479807806 1.800000e-21 115.0
90 TraesCS6D01G353700 chr1D 93.421 76 5 0 2973 3048 474124888 474124963 6.460000e-21 113.0
91 TraesCS6D01G353700 chr1D 93.243 74 5 0 2973 3046 287672461 287672534 8.350000e-20 110.0
92 TraesCS6D01G353700 chr1D 78.191 188 25 11 4347 4523 145941520 145941702 1.080000e-18 106.0
93 TraesCS6D01G353700 chr1D 93.056 72 5 0 2973 3044 396326486 396326557 1.080000e-18 106.0
94 TraesCS6D01G353700 chr1D 94.203 69 4 0 2979 3047 481352964 481352896 1.080000e-18 106.0
95 TraesCS6D01G353700 chr1D 90.541 74 7 0 2973 3046 213338210 213338283 1.810000e-16 99.0
96 TraesCS6D01G353700 chr1D 89.474 76 8 0 2973 3048 348998418 348998493 6.500000e-16 97.1
97 TraesCS6D01G353700 chr1D 89.333 75 7 1 2979 3053 249021023 249020950 8.410000e-15 93.5
98 TraesCS6D01G353700 chr1D 97.297 37 1 0 1403 1439 400966025 400966061 6.600000e-06 63.9
99 TraesCS6D01G353700 chr6A 91.151 1164 58 14 3507 4626 595071505 595072667 0.000000e+00 1537.0
100 TraesCS6D01G353700 chr6A 92.059 1020 73 4 4728 5740 595073097 595074115 0.000000e+00 1428.0
101 TraesCS6D01G353700 chr6A 84.752 1128 101 30 3473 4552 595049973 595048869 0.000000e+00 1064.0
102 TraesCS6D01G353700 chr6A 91.654 683 55 2 4924 5606 595048851 595048171 0.000000e+00 944.0
103 TraesCS6D01G353700 chr6A 91.399 686 58 1 4924 5609 595025231 595024547 0.000000e+00 939.0
104 TraesCS6D01G353700 chr6A 82.028 1124 155 22 1440 2524 97569735 97568620 0.000000e+00 913.0
105 TraesCS6D01G353700 chr6A 90.281 463 40 4 5767 6225 595074357 595074818 1.130000e-167 601.0
106 TraesCS6D01G353700 chr6A 88.272 486 21 15 621 1104 595070119 595070570 4.150000e-152 549.0
107 TraesCS6D01G353700 chr6A 92.092 392 19 6 6225 6614 595076131 595076512 6.950000e-150 542.0
108 TraesCS6D01G353700 chr6A 86.355 513 36 17 6607 7118 595076687 595077166 5.410000e-146 529.0
109 TraesCS6D01G353700 chr6A 85.682 440 40 9 3080 3512 595071004 595071427 7.250000e-120 442.0
110 TraesCS6D01G353700 chr6A 91.353 266 23 0 6600 6865 595024163 595023898 1.610000e-96 364.0
111 TraesCS6D01G353700 chr6A 85.552 353 25 15 6651 6993 595047677 595047341 5.850000e-91 346.0
112 TraesCS6D01G353700 chr6A 79.840 501 70 12 1439 1911 108885734 108885237 3.520000e-88 337.0
113 TraesCS6D01G353700 chr6A 95.980 199 8 0 6310 6508 595024377 595024179 2.740000e-84 324.0
114 TraesCS6D01G353700 chr6A 88.302 265 31 0 7532 7796 595000136 594999872 1.280000e-82 318.0
115 TraesCS6D01G353700 chr6A 85.563 284 26 12 834 1103 595029729 595029447 4.650000e-72 283.0
116 TraesCS6D01G353700 chr6A 89.091 220 21 3 6310 6529 595047936 595047720 3.620000e-68 270.0
117 TraesCS6D01G353700 chr6A 85.425 247 10 9 880 1104 595052233 595051991 4.750000e-57 233.0
118 TraesCS6D01G353700 chr6A 79.323 266 30 12 1403 1647 72917181 72916920 6.320000e-36 163.0
119 TraesCS6D01G353700 chr6A 84.024 169 20 5 4713 4874 552705999 552706167 1.060000e-33 156.0
120 TraesCS6D01G353700 chr6A 97.561 41 1 0 4692 4732 579399577 579399617 3.940000e-08 71.3
121 TraesCS6D01G353700 chr5A 83.481 1580 202 27 1439 2973 493296421 493297986 0.000000e+00 1417.0
122 TraesCS6D01G353700 chr5A 78.882 1610 223 65 1453 2972 646990371 646991953 0.000000e+00 981.0
123 TraesCS6D01G353700 chr5A 79.739 153 23 7 4332 4477 357932989 357933140 3.890000e-18 104.0
124 TraesCS6D01G353700 chr5A 79.866 149 22 7 4336 4477 357936824 357936971 1.400000e-17 102.0
125 TraesCS6D01G353700 chr5A 90.000 80 5 3 4616 4694 87938708 87938785 5.030000e-17 100.0
126 TraesCS6D01G353700 chr5A 92.157 51 1 3 4686 4736 643302128 643302081 1.420000e-07 69.4
127 TraesCS6D01G353700 chr2B 94.234 607 35 0 2 608 747860816 747861422 0.000000e+00 928.0
128 TraesCS6D01G353700 chr2B 93.904 607 37 0 2 608 418282921 418283527 0.000000e+00 917.0
129 TraesCS6D01G353700 chr2B 77.570 1284 208 44 1446 2672 730845607 730844347 0.000000e+00 702.0
130 TraesCS6D01G353700 chr3B 94.234 607 33 2 2 608 780286275 780286879 0.000000e+00 926.0
131 TraesCS6D01G353700 chr3B 80.769 156 21 8 4335 4483 765124601 765124448 6.460000e-21 113.0
132 TraesCS6D01G353700 chr7A 93.904 607 36 1 2 608 460311124 460311729 0.000000e+00 915.0
133 TraesCS6D01G353700 chr7A 84.774 532 42 25 6327 6858 555650982 555651474 1.530000e-136 497.0
134 TraesCS6D01G353700 chr7A 93.304 224 15 0 6651 6874 513414322 513414099 1.640000e-86 331.0
135 TraesCS6D01G353700 chr7A 78.641 206 28 11 4334 4528 77076542 77076742 1.070000e-23 122.0
136 TraesCS6D01G353700 chr7A 94.667 75 4 0 2973 3047 398909942 398909868 4.990000e-22 117.0
137 TraesCS6D01G353700 chr4A 93.904 607 36 1 2 608 708541356 708541961 0.000000e+00 915.0
138 TraesCS6D01G353700 chr4A 75.952 499 58 21 1403 1843 87487 86993 4.820000e-47 200.0
139 TraesCS6D01G353700 chr4B 93.740 607 38 0 2 608 472071267 472070661 0.000000e+00 911.0
140 TraesCS6D01G353700 chr4B 75.904 498 60 20 1403 1843 129250 128756 4.820000e-47 200.0
141 TraesCS6D01G353700 chr4B 95.833 48 1 1 4690 4737 499853726 499853680 8.470000e-10 76.8
142 TraesCS6D01G353700 chr4D 79.440 1357 222 45 1652 2971 10645558 10646894 0.000000e+00 907.0
143 TraesCS6D01G353700 chr4D 87.402 127 16 0 4729 4855 39401327 39401201 6.370000e-31 147.0
144 TraesCS6D01G353700 chr4D 79.012 162 22 8 4728 4888 423414825 423414975 5.030000e-17 100.0
145 TraesCS6D01G353700 chr4D 82.796 93 15 1 4386 4477 138704992 138704900 1.820000e-11 82.4
146 TraesCS6D01G353700 chr4D 94.340 53 1 2 4685 4737 403140062 403140012 6.550000e-11 80.5
147 TraesCS6D01G353700 chr4D 90.244 41 3 1 4434 4474 103250435 103250396 1.400000e-02 52.8
148 TraesCS6D01G353700 chr4D 100.000 28 0 0 4447 4474 291740911 291740884 1.400000e-02 52.8
149 TraesCS6D01G353700 chr7B 88.302 701 81 1 4924 5624 516464212 516464911 0.000000e+00 839.0
150 TraesCS6D01G353700 chr7B 88.304 684 78 2 4924 5607 435789520 435790201 0.000000e+00 819.0
151 TraesCS6D01G353700 chr7B 84.743 544 38 21 6327 6869 516465000 516465499 3.280000e-138 503.0
152 TraesCS6D01G353700 chr7B 92.000 225 18 0 6643 6867 435790533 435790757 4.590000e-82 316.0
153 TraesCS6D01G353700 chr7B 90.909 176 16 0 6318 6493 435790266 435790441 3.670000e-58 237.0
154 TraesCS6D01G353700 chr7B 86.528 193 26 0 4729 4921 505479210 505479018 6.190000e-51 213.0
155 TraesCS6D01G353700 chr7B 84.653 202 30 1 4725 4926 103082481 103082681 4.820000e-47 200.0
156 TraesCS6D01G353700 chr7B 89.076 119 4 1 995 1104 516463169 516463287 1.070000e-28 139.0
157 TraesCS6D01G353700 chr1A 77.384 734 104 33 1439 2141 331269271 331268569 5.770000e-101 379.0
158 TraesCS6D01G353700 chr1A 80.717 223 31 10 4713 4925 372032259 372032039 6.320000e-36 163.0
159 TraesCS6D01G353700 chr1A 80.198 202 34 6 4728 4926 16387285 16387087 6.370000e-31 147.0
160 TraesCS6D01G353700 chr1A 78.610 187 25 10 4347 4523 143819048 143819229 8.350000e-20 110.0
161 TraesCS6D01G353700 chr1A 94.737 38 2 0 4336 4373 3385868 3385905 8.530000e-05 60.2
162 TraesCS6D01G353700 chr3A 85.930 199 27 1 4728 4925 615161187 615161385 2.230000e-50 211.0
163 TraesCS6D01G353700 chr5D 84.112 214 30 3 4714 4926 338529951 338530161 3.730000e-48 204.0
164 TraesCS6D01G353700 chr5D 90.789 152 14 0 4728 4879 427372446 427372295 3.730000e-48 204.0
165 TraesCS6D01G353700 chr5D 83.415 205 29 5 4728 4929 411786822 411787024 1.350000e-42 185.0
166 TraesCS6D01G353700 chr5D 85.227 176 25 1 4752 4926 427372838 427372663 6.280000e-41 180.0
167 TraesCS6D01G353700 chr5D 81.567 217 32 7 4714 4926 135233026 135232814 1.050000e-38 172.0
168 TraesCS6D01G353700 chr5D 80.625 160 25 4 4335 4488 255076211 255076370 1.390000e-22 119.0
169 TraesCS6D01G353700 chr5D 92.405 79 6 0 2973 3051 420845552 420845474 6.460000e-21 113.0
170 TraesCS6D01G353700 chr5D 93.243 74 5 0 2973 3046 2801934 2802007 8.350000e-20 110.0
171 TraesCS6D01G353700 chr5B 84.729 203 28 3 4728 4929 516929543 516929343 4.820000e-47 200.0
172 TraesCS6D01G353700 chr5B 95.122 41 0 2 4437 4476 271946289 271946250 6.600000e-06 63.9
173 TraesCS6D01G353700 chr5B 88.679 53 3 3 4685 4737 647877405 647877356 2.370000e-05 62.1
174 TraesCS6D01G353700 chr1B 82.569 218 33 5 4729 4944 17069258 17069044 3.750000e-43 187.0
175 TraesCS6D01G353700 chr1B 84.865 185 26 2 4731 4913 658390547 658390363 1.350000e-42 185.0
176 TraesCS6D01G353700 chr1B 80.000 115 18 3 7342 7456 604712689 604712580 6.550000e-11 80.5
177 TraesCS6D01G353700 chr1B 96.970 33 0 1 4334 4366 76792537 76792568 4.000000e-03 54.7
178 TraesCS6D01G353700 chrUn 82.955 176 27 3 4725 4900 50926774 50926946 1.060000e-33 156.0
179 TraesCS6D01G353700 chrUn 83.237 173 26 3 4728 4900 226877323 226877154 1.060000e-33 156.0
180 TraesCS6D01G353700 chrUn 89.189 74 8 0 2979 3052 108525743 108525670 8.410000e-15 93.5
181 TraesCS6D01G353700 chrUn 88.889 72 8 0 2973 3044 226888948 226889019 1.090000e-13 89.8
182 TraesCS6D01G353700 chrUn 88.889 72 8 0 2973 3044 400887676 400887747 1.090000e-13 89.8
183 TraesCS6D01G353700 chrUn 85.915 71 9 1 2974 3044 75000822 75000753 3.050000e-09 75.0
184 TraesCS6D01G353700 chrUn 91.837 49 3 1 2996 3044 75403812 75403765 5.100000e-07 67.6
185 TraesCS6D01G353700 chrUn 91.837 49 3 1 2996 3044 438415711 438415664 5.100000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G353700 chr6D 449246488 449254361 7873 False 14541.000000 14541 100.000000 1 7874 1 chr6D.!!$F8 7873
1 TraesCS6D01G353700 chr6D 361484995 361486567 1572 True 1703.000000 1703 86.796000 1439 2976 1 chr6D.!!$R3 1537
2 TraesCS6D01G353700 chr6D 346560073 346561646 1573 False 1696.000000 1696 86.662000 1433 2973 1 chr6D.!!$F5 1540
3 TraesCS6D01G353700 chr6D 25284336 25285748 1412 False 1493.000000 1493 86.549000 1519 2867 1 chr6D.!!$F1 1348
4 TraesCS6D01G353700 chr6D 226018243 226019517 1274 True 708.000000 708 77.701000 1403 2639 1 chr6D.!!$R2 1236
5 TraesCS6D01G353700 chr6D 449216327 449221480 5153 True 679.000000 1592 89.095000 880 6897 5 chr6D.!!$R8 6017
6 TraesCS6D01G353700 chr6D 449185475 449189689 4214 True 480.333333 977 86.372167 819 7097 6 chr6D.!!$R7 6278
7 TraesCS6D01G353700 chr6D 427757682 427758264 582 True 401.000000 401 80.409000 1439 1980 1 chr6D.!!$R4 541
8 TraesCS6D01G353700 chr6B 40444364 40444970 606 True 917.000000 917 93.904000 2 608 1 chr6B.!!$R2 606
9 TraesCS6D01G353700 chr6B 137414069 137414675 606 False 917.000000 917 93.904000 2 608 1 chr6B.!!$F2 606
10 TraesCS6D01G353700 chr6B 155750159 155750765 606 False 917.000000 917 93.904000 2 608 1 chr6B.!!$F3 606
11 TraesCS6D01G353700 chr6B 680808883 680816084 7201 False 907.462500 3241 90.721875 616 7456 8 chr6B.!!$F6 6840
12 TraesCS6D01G353700 chr6B 680777531 680781842 4311 True 585.000000 924 89.605000 954 6874 4 chr6B.!!$R3 5920
13 TraesCS6D01G353700 chr6B 680858392 680862955 4563 False 493.200000 928 86.640000 962 7097 5 chr6B.!!$F7 6135
14 TraesCS6D01G353700 chr2D 601701958 601703429 1471 False 1978.000000 1978 91.137000 1521 2976 1 chr2D.!!$F4 1455
15 TraesCS6D01G353700 chr2D 343158390 343159979 1589 False 1576.000000 1576 85.147000 1403 2976 1 chr2D.!!$F2 1573
16 TraesCS6D01G353700 chr2D 380581043 380582520 1477 True 1267.000000 1267 82.964000 1442 2859 1 chr2D.!!$R1 1417
17 TraesCS6D01G353700 chr2D 641565761 641566976 1215 True 837.000000 837 79.514000 1651 2859 1 chr2D.!!$R2 1208
18 TraesCS6D01G353700 chr7D 3375452 3376892 1440 False 1821.000000 1821 90.090000 1521 2910 1 chr7D.!!$F1 1389
19 TraesCS6D01G353700 chr7D 221821768 221823081 1313 True 1094.000000 1094 82.222000 1661 2971 1 chr7D.!!$R2 1310
20 TraesCS6D01G353700 chr7D 30825900 30826539 639 False 536.000000 536 82.893000 1439 2038 1 chr7D.!!$F2 599
21 TraesCS6D01G353700 chr7D 487738043 487740338 2295 False 483.333333 795 86.878000 995 6859 3 chr7D.!!$F5 5864
22 TraesCS6D01G353700 chr7D 419767416 419768670 1254 False 471.666667 848 91.198667 4929 6859 3 chr7D.!!$F4 1930
23 TraesCS6D01G353700 chr3D 608183792 608185308 1516 True 1751.000000 1751 88.166000 1516 2974 1 chr3D.!!$R2 1458
24 TraesCS6D01G353700 chr2A 470655932 470657442 1510 False 1672.000000 1672 87.213000 1439 2908 1 chr2A.!!$F1 1469
25 TraesCS6D01G353700 chr1D 204793362 204794925 1563 True 1668.000000 1668 86.466000 1439 2976 1 chr1D.!!$R2 1537
26 TraesCS6D01G353700 chr1D 107651691 107653296 1605 False 1629.000000 1629 85.741000 1439 2976 1 chr1D.!!$F1 1537
27 TraesCS6D01G353700 chr1D 215003990 215005548 1558 True 1286.000000 1286 82.172000 1439 2976 1 chr1D.!!$R3 1537
28 TraesCS6D01G353700 chr1D 396324785 396326557 1772 False 864.000000 1622 89.641500 1485 3044 2 chr1D.!!$F11 1559
29 TraesCS6D01G353700 chr1D 449648717 449649770 1053 False 754.000000 754 80.019000 1657 2697 1 chr1D.!!$F7 1040
30 TraesCS6D01G353700 chr1D 400966025 400967741 1716 False 713.450000 1363 90.728500 1403 2969 2 chr1D.!!$F12 1566
31 TraesCS6D01G353700 chr1D 486887573 486888318 745 False 462.000000 462 79.045000 1439 2141 1 chr1D.!!$F10 702
32 TraesCS6D01G353700 chr6A 97568620 97569735 1115 True 913.000000 913 82.028000 1440 2524 1 chr6A.!!$R2 1084
33 TraesCS6D01G353700 chr6A 595070119 595077166 7047 False 804.000000 1537 89.413143 621 7118 7 chr6A.!!$F3 6497
34 TraesCS6D01G353700 chr6A 595047341 595052233 4892 True 571.400000 1064 87.294800 880 6993 5 chr6A.!!$R7 6113
35 TraesCS6D01G353700 chr6A 595023898 595025231 1333 True 542.333333 939 92.910667 4924 6865 3 chr6A.!!$R6 1941
36 TraesCS6D01G353700 chr5A 493296421 493297986 1565 False 1417.000000 1417 83.481000 1439 2973 1 chr5A.!!$F2 1534
37 TraesCS6D01G353700 chr5A 646990371 646991953 1582 False 981.000000 981 78.882000 1453 2972 1 chr5A.!!$F3 1519
38 TraesCS6D01G353700 chr2B 747860816 747861422 606 False 928.000000 928 94.234000 2 608 1 chr2B.!!$F2 606
39 TraesCS6D01G353700 chr2B 418282921 418283527 606 False 917.000000 917 93.904000 2 608 1 chr2B.!!$F1 606
40 TraesCS6D01G353700 chr2B 730844347 730845607 1260 True 702.000000 702 77.570000 1446 2672 1 chr2B.!!$R1 1226
41 TraesCS6D01G353700 chr3B 780286275 780286879 604 False 926.000000 926 94.234000 2 608 1 chr3B.!!$F1 606
42 TraesCS6D01G353700 chr7A 460311124 460311729 605 False 915.000000 915 93.904000 2 608 1 chr7A.!!$F2 606
43 TraesCS6D01G353700 chr4A 708541356 708541961 605 False 915.000000 915 93.904000 2 608 1 chr4A.!!$F1 606
44 TraesCS6D01G353700 chr4B 472070661 472071267 606 True 911.000000 911 93.740000 2 608 1 chr4B.!!$R2 606
45 TraesCS6D01G353700 chr4D 10645558 10646894 1336 False 907.000000 907 79.440000 1652 2971 1 chr4D.!!$F1 1319
46 TraesCS6D01G353700 chr7B 516463169 516465499 2330 False 493.666667 839 87.373667 995 6869 3 chr7B.!!$F3 5874
47 TraesCS6D01G353700 chr7B 435789520 435790757 1237 False 457.333333 819 90.404333 4924 6867 3 chr7B.!!$F2 1943
48 TraesCS6D01G353700 chr1A 331268569 331269271 702 True 379.000000 379 77.384000 1439 2141 1 chr1A.!!$R2 702

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
722 726 0.744414 ATGGTTTCGTCTCGGCATGG 60.744 55.000 0.00 0.00 0.00 3.66 F
761 765 1.964373 CGGCACTGTTACACCCACC 60.964 63.158 0.00 0.00 0.00 4.61 F
1624 4063 0.464452 AAAGGAATCTACGGGGCGAG 59.536 55.000 0.00 0.00 0.00 5.03 F
1985 4577 1.298859 GCTCCGGCTTGACGAAACAT 61.299 55.000 0.00 0.00 35.47 2.71 F
2544 5264 1.302033 CCGTTGCTGAGCTTCCACT 60.302 57.895 5.83 0.00 0.00 4.00 F
3554 6672 3.057526 GGCAAAGAGGTTGTAGCGATTTT 60.058 43.478 0.00 0.00 39.63 1.82 F
4602 9147 1.944177 TCTCCAAAGAGGACCCTCAG 58.056 55.000 17.50 6.45 43.07 3.35 F
5353 10624 0.036164 CCGACACCATTCCACTGGAA 59.964 55.000 13.08 13.08 46.39 3.53 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1624 4063 2.956964 CCGCGCTGATCGACTTCC 60.957 66.667 5.56 0.00 41.67 3.46 R
2011 4603 3.390521 TCATCAACGAGGGCGGCT 61.391 61.111 9.56 0.00 43.17 5.52 R
2994 5995 1.903404 CTCCCCAGGCGTTTTTGCT 60.903 57.895 0.00 0.00 34.52 3.91 R
3347 6360 2.035449 TGACAAGTAACTGAGGGTGACG 59.965 50.000 0.00 0.00 34.50 4.35 R
4152 8164 0.385751 CTCACACACAGACCGACACT 59.614 55.000 0.00 0.00 0.00 3.55 R
4690 9249 0.451783 GGTCAAATGCATGTCCGGAC 59.548 55.000 28.17 28.17 0.00 4.79 R
6113 11736 0.175989 AGGGGATTTTCGTCTCTCGC 59.824 55.000 0.00 0.00 39.67 5.03 R
7292 16193 0.034337 TGGGTCTAGCGTGTGTTTCC 59.966 55.000 0.00 0.00 0.00 3.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 1.566231 CTAGGGTTCTTTGCCTCCCAT 59.434 52.381 0.00 0.00 42.12 4.00
174 175 2.701780 GCTCAGGAAGGCGAGACGA 61.702 63.158 0.00 0.00 0.00 4.20
190 191 4.388499 GACGGCGGCTCCCTGAAA 62.388 66.667 13.24 0.00 0.00 2.69
235 238 3.124921 CCCGTTCCGGTGATGTGC 61.125 66.667 0.00 0.00 46.80 4.57
253 256 1.300931 CGTAGCATCATCGGTGGGG 60.301 63.158 0.00 0.00 0.00 4.96
264 267 2.204029 GGTGGGGGTGTGGAGGTA 60.204 66.667 0.00 0.00 0.00 3.08
306 309 2.115427 TGGTGGATTTGCTCGGATCTA 58.885 47.619 0.00 0.00 0.00 1.98
371 374 6.351711 CCTTTTGATCTACACTCTCCATCTGT 60.352 42.308 0.00 0.00 0.00 3.41
439 442 4.232188 TGACTTCCCGACTGTCTACTAT 57.768 45.455 6.21 0.00 0.00 2.12
461 464 1.978617 AATGTTTGCCCGGCTCTGG 60.979 57.895 11.61 0.00 0.00 3.86
473 476 3.382832 CTCTGGCGAGGAACGGGT 61.383 66.667 0.00 0.00 42.83 5.28
544 547 2.024655 AGGTGGTCTACGGTTCTGGATA 60.025 50.000 0.00 0.00 0.00 2.59
550 553 7.039504 GGTGGTCTACGGTTCTGGATATAATTA 60.040 40.741 0.00 0.00 0.00 1.40
585 588 5.592054 AGTGTCCGTTGTACTATCATGATG 58.408 41.667 18.72 10.51 0.00 3.07
608 611 9.698309 GATGGAAGATGAATAGATCGAAAGTTA 57.302 33.333 0.00 0.00 0.00 2.24
610 613 9.884636 TGGAAGATGAATAGATCGAAAGTTAAA 57.115 29.630 0.00 0.00 0.00 1.52
639 642 2.221981 CACGAGTGTTTTGCTTCCTCTC 59.778 50.000 0.00 0.00 0.00 3.20
650 653 1.078918 TTCCTCTCGGCATGCACAG 60.079 57.895 21.36 14.19 0.00 3.66
659 662 3.434319 CATGCACAGCCCACCGAC 61.434 66.667 0.00 0.00 0.00 4.79
682 685 1.596752 CAGCGGCACTGTTACACCA 60.597 57.895 1.45 0.00 41.86 4.17
722 726 0.744414 ATGGTTTCGTCTCGGCATGG 60.744 55.000 0.00 0.00 0.00 3.66
739 743 3.986006 GACAGCACACCGACGGGA 61.986 66.667 20.00 0.00 36.97 5.14
761 765 1.964373 CGGCACTGTTACACCCACC 60.964 63.158 0.00 0.00 0.00 4.61
855 859 3.787676 CGATGACGCGCTTGGCAA 61.788 61.111 5.73 0.00 43.84 4.52
968 1016 5.164233 CAGAGACGCAAGAACTAATTCTCA 58.836 41.667 0.00 0.00 44.82 3.27
1156 3278 5.939764 TCTTAGTCTCTGTGGCATGTAAT 57.060 39.130 0.00 0.00 0.00 1.89
1157 3279 5.907207 TCTTAGTCTCTGTGGCATGTAATC 58.093 41.667 0.00 0.00 0.00 1.75
1158 3280 3.550437 AGTCTCTGTGGCATGTAATCC 57.450 47.619 0.00 0.00 0.00 3.01
1159 3281 2.840038 AGTCTCTGTGGCATGTAATCCA 59.160 45.455 0.00 0.00 0.00 3.41
1160 3282 3.264193 AGTCTCTGTGGCATGTAATCCAA 59.736 43.478 0.00 0.00 33.57 3.53
1161 3283 4.009675 GTCTCTGTGGCATGTAATCCAAA 58.990 43.478 0.00 0.00 33.57 3.28
1162 3284 4.458989 GTCTCTGTGGCATGTAATCCAAAA 59.541 41.667 0.00 0.00 33.57 2.44
1194 3316 7.038302 TCCCTAGATTCATACATGGTGGTTATC 60.038 40.741 0.00 1.42 0.00 1.75
1276 3474 3.828875 TGTCATGTGTCCACTACAACA 57.171 42.857 0.00 0.00 40.63 3.33
1284 3482 4.871557 TGTGTCCACTACAACAGTAACAAC 59.128 41.667 0.00 0.00 40.63 3.32
1325 3541 3.370061 GTCCAGTACTAAAACCATGACGC 59.630 47.826 0.00 0.00 0.00 5.19
1391 3620 3.608474 CGCTGTTAGTTGTAAAAGCCACC 60.608 47.826 2.43 0.00 44.06 4.61
1393 3622 4.320275 GCTGTTAGTTGTAAAAGCCACCTC 60.320 45.833 0.00 0.00 41.93 3.85
1395 3624 4.141344 TGTTAGTTGTAAAAGCCACCTCCT 60.141 41.667 0.00 0.00 0.00 3.69
1396 3625 3.141767 AGTTGTAAAAGCCACCTCCTC 57.858 47.619 0.00 0.00 0.00 3.71
1397 3626 2.711547 AGTTGTAAAAGCCACCTCCTCT 59.288 45.455 0.00 0.00 0.00 3.69
1398 3627 3.908103 AGTTGTAAAAGCCACCTCCTCTA 59.092 43.478 0.00 0.00 0.00 2.43
1399 3628 4.020128 AGTTGTAAAAGCCACCTCCTCTAG 60.020 45.833 0.00 0.00 0.00 2.43
1400 3629 3.517612 TGTAAAAGCCACCTCCTCTAGT 58.482 45.455 0.00 0.00 0.00 2.57
1401 3630 3.908103 TGTAAAAGCCACCTCCTCTAGTT 59.092 43.478 0.00 0.00 0.00 2.24
1511 3898 3.148412 GTTACCCAGACCCGCTTTTTAA 58.852 45.455 0.00 0.00 0.00 1.52
1512 3899 2.368311 ACCCAGACCCGCTTTTTAAA 57.632 45.000 0.00 0.00 0.00 1.52
1543 3950 2.214347 TGAATTCGGCAAAGTTCGACA 58.786 42.857 0.04 0.00 34.99 4.35
1560 3987 5.171147 TCGACAAAAATTCGGCAAACTTA 57.829 34.783 0.00 0.00 37.09 2.24
1583 4011 9.773328 CTTAACATTCATATTCAACATGTTCGT 57.227 29.630 8.48 0.07 38.64 3.85
1624 4063 0.464452 AAAGGAATCTACGGGGCGAG 59.536 55.000 0.00 0.00 0.00 5.03
1985 4577 1.298859 GCTCCGGCTTGACGAAACAT 61.299 55.000 0.00 0.00 35.47 2.71
2097 4706 2.357517 CTGCCTTGACGCCGAAGT 60.358 61.111 0.00 0.00 0.00 3.01
2544 5264 1.302033 CCGTTGCTGAGCTTCCACT 60.302 57.895 5.83 0.00 0.00 4.00
2730 5529 4.212913 GGCAGAGCTCGATGGCGA 62.213 66.667 12.79 0.00 45.71 5.54
2910 5759 3.944250 AATGGCAAGGCTGACCGGG 62.944 63.158 6.32 0.00 42.76 5.73
2990 5991 4.490575 CCGAATTTTGGGCGCCGG 62.491 66.667 22.54 12.00 0.00 6.13
3090 6091 3.545481 CGCGCTTGTGGCTCGTAG 61.545 66.667 5.56 0.00 43.17 3.51
3174 6175 7.963981 TGTTTCGATGACTTCATTGATTAGTC 58.036 34.615 9.54 10.35 43.98 2.59
3181 6187 5.721480 TGACTTCATTGATTAGTCCTCTCCA 59.279 40.000 13.43 0.00 37.97 3.86
3182 6188 6.385176 TGACTTCATTGATTAGTCCTCTCCAT 59.615 38.462 13.43 0.00 37.97 3.41
3261 6274 9.860898 GAGGCAAAGAAATAGTGAATACATTTT 57.139 29.630 0.00 0.00 0.00 1.82
3311 6324 8.877864 TTTCCATGTTGTAATCTTTAGGTGAT 57.122 30.769 0.00 0.00 0.00 3.06
3429 6442 3.935828 GTGGTCTTTGCTCTTCCTATGTC 59.064 47.826 0.00 0.00 0.00 3.06
3554 6672 3.057526 GGCAAAGAGGTTGTAGCGATTTT 60.058 43.478 0.00 0.00 39.63 1.82
3555 6673 3.914364 GCAAAGAGGTTGTAGCGATTTTG 59.086 43.478 0.00 0.00 39.63 2.44
3598 6725 5.453567 AGCTTGTTTGGATTGAAACTACC 57.546 39.130 0.00 0.00 36.86 3.18
3653 6814 9.941664 AATTTAATCATCATCACATCTTTCGTC 57.058 29.630 0.00 0.00 0.00 4.20
3662 6824 7.267857 TCATCACATCTTTCGTCAATAGTGAT 58.732 34.615 0.00 0.00 43.81 3.06
3983 7175 9.612066 TTTGCAAATTATTTTCTCAAACCTCTT 57.388 25.926 8.05 0.00 0.00 2.85
4152 8164 5.667539 TTGGATTTTGAACCTTGTTGACA 57.332 34.783 0.00 0.00 0.00 3.58
4244 8258 9.538508 GCATCTGCCTCTTTGATAAAAATAAAT 57.461 29.630 0.00 0.00 34.31 1.40
4275 8294 3.694566 TGAGACTAGTTGCATTAGCGAGA 59.305 43.478 0.00 0.00 46.23 4.04
4312 8344 9.438291 GTTGATAGACGAAACCATGATTTATTG 57.562 33.333 0.00 0.00 0.00 1.90
4503 9047 8.757789 CGTACTTTTGACTTTGTGTAGTTATCA 58.242 33.333 0.00 0.00 0.00 2.15
4602 9147 1.944177 TCTCCAAAGAGGACCCTCAG 58.056 55.000 17.50 6.45 43.07 3.35
4670 9229 3.889538 TGTATATGTCCGCTTAGCAGTCT 59.110 43.478 4.70 0.00 0.00 3.24
4678 9237 2.033049 CCGCTTAGCAGTCTGTACGTAT 59.967 50.000 4.70 0.00 0.00 3.06
4683 9242 5.048921 GCTTAGCAGTCTGTACGTATGGATA 60.049 44.000 0.00 0.00 0.00 2.59
4684 9243 4.832590 AGCAGTCTGTACGTATGGATAC 57.167 45.455 0.00 0.00 0.00 2.24
4690 9249 4.153117 GTCTGTACGTATGGATACCGGTAG 59.847 50.000 20.91 6.84 0.00 3.18
4693 9252 2.508526 ACGTATGGATACCGGTAGTCC 58.491 52.381 24.79 24.79 0.00 3.85
4724 9584 0.818938 TGACCAATCACATGCATGGC 59.181 50.000 29.41 9.84 36.37 4.40
4798 9671 2.643304 GGTCCCCACCTACTTTTTCTCT 59.357 50.000 0.00 0.00 40.00 3.10
4855 9728 1.524002 CCTCCTGCATCATGTCCGT 59.476 57.895 0.00 0.00 0.00 4.69
4880 9753 1.267261 CACGCCCGGACATAAAAACAA 59.733 47.619 0.73 0.00 0.00 2.83
4889 9762 7.415877 GCCCGGACATAAAAACAAACATATACT 60.416 37.037 0.73 0.00 0.00 2.12
4908 9781 2.301870 ACTGGAGACATTTACGGCTCAA 59.698 45.455 0.00 0.00 41.51 3.02
4922 9795 2.659428 GGCTCAACTTTGGATATGCCT 58.341 47.619 0.00 0.00 37.63 4.75
4934 9807 7.717875 ACTTTGGATATGCCTTAATAGCGTTTA 59.282 33.333 0.00 0.00 37.63 2.01
4975 10246 7.984422 TGTTTCTTATGATTCTTGCTTCAGA 57.016 32.000 0.00 0.00 0.00 3.27
5017 10288 5.012046 TGTGGTGATCAAGATTCTGTACTGT 59.988 40.000 0.00 0.00 0.00 3.55
5020 10291 5.337571 GGTGATCAAGATTCTGTACTGTGGA 60.338 44.000 0.00 0.00 0.00 4.02
5064 10335 3.937706 AGCATCAAGAACGATTGGAAGAG 59.062 43.478 0.00 0.00 0.00 2.85
5229 10500 1.594310 GCTTCGAGAACCTCTGCCT 59.406 57.895 0.00 0.00 0.00 4.75
5353 10624 0.036164 CCGACACCATTCCACTGGAA 59.964 55.000 13.08 13.08 46.39 3.53
5420 10691 4.561938 CCATGAAGTACCACGGTCTAAACA 60.562 45.833 0.00 0.00 0.00 2.83
5729 11009 4.302559 AGAACAACCCTAAGGCCTAAAG 57.697 45.455 5.16 6.91 36.11 1.85
5870 11443 2.090831 ACCCTGATCTAGGCAGACATCT 60.091 50.000 13.11 0.00 45.89 2.90
5979 11601 4.260620 CCACGAGTAACAACAAGGACAAAG 60.261 45.833 0.00 0.00 0.00 2.77
6058 11680 6.018180 GTCGGGCGACTTTTATTTTAGATGAT 60.018 38.462 0.00 0.00 41.57 2.45
6107 11730 2.069273 CGAGACCAAAACCTGCTACAG 58.931 52.381 0.00 0.00 0.00 2.74
6113 11736 3.636764 ACCAAAACCTGCTACAGAAAAGG 59.363 43.478 0.00 0.00 32.44 3.11
6121 11744 2.263945 GCTACAGAAAAGGCGAGAGAC 58.736 52.381 0.00 0.00 42.06 3.36
6152 11775 3.075005 CCTCCACCCCGTCGTCAT 61.075 66.667 0.00 0.00 0.00 3.06
6155 11778 0.533491 CTCCACCCCGTCGTCATAAA 59.467 55.000 0.00 0.00 0.00 1.40
6684 13968 3.797353 GCCGGGAGCCTCATTGGA 61.797 66.667 2.18 0.00 38.35 3.53
6895 14185 3.010138 AGAGTGACTCTACCTCTCTGCTT 59.990 47.826 14.47 0.00 39.28 3.91
6901 14191 3.898123 ACTCTACCTCTCTGCTTTTGTCA 59.102 43.478 0.00 0.00 0.00 3.58
6902 14192 4.021544 ACTCTACCTCTCTGCTTTTGTCAG 60.022 45.833 0.00 0.00 0.00 3.51
6904 14194 2.050144 ACCTCTCTGCTTTTGTCAGGA 58.950 47.619 0.00 0.00 32.63 3.86
6922 14226 5.470098 GTCAGGAAGTAGCAAGAAACAATCA 59.530 40.000 0.00 0.00 0.00 2.57
7033 15926 9.368416 AGGAAGATAGTAGCAGTACATGAATTA 57.632 33.333 0.00 0.00 0.00 1.40
7071 15968 5.359009 AGATGTTGCATGGTATCCAAAGAAG 59.641 40.000 0.00 0.00 36.95 2.85
7135 16035 7.229707 TGCCTAACATTTTTCTAGTACAAGCAA 59.770 33.333 0.00 0.00 0.00 3.91
7163 16063 7.885009 TGGATTTTGCTGATGATTTAGATGA 57.115 32.000 0.00 0.00 0.00 2.92
7190 16090 3.096852 TCTTTCTCCCTGATCTACGCAA 58.903 45.455 0.00 0.00 0.00 4.85
7195 16095 1.135199 TCCCTGATCTACGCAACGTTC 60.135 52.381 0.00 0.00 41.54 3.95
7200 16100 0.246635 ATCTACGCAACGTTCTGGCT 59.753 50.000 0.00 0.00 41.54 4.75
7216 16116 5.869649 TCTGGCTAATATGCTGAGTAACA 57.130 39.130 0.00 0.00 0.00 2.41
7220 16120 7.015195 TCTGGCTAATATGCTGAGTAACATACA 59.985 37.037 0.00 0.00 31.87 2.29
7252 16153 8.926715 AAGGTACAGTCTTTTCAAAATTTCAC 57.073 30.769 0.00 0.00 0.00 3.18
7253 16154 8.293699 AGGTACAGTCTTTTCAAAATTTCACT 57.706 30.769 0.00 0.00 0.00 3.41
7254 16155 8.190784 AGGTACAGTCTTTTCAAAATTTCACTG 58.809 33.333 0.00 8.71 36.81 3.66
7255 16156 8.188139 GGTACAGTCTTTTCAAAATTTCACTGA 58.812 33.333 14.07 0.00 35.15 3.41
7256 16157 9.736023 GTACAGTCTTTTCAAAATTTCACTGAT 57.264 29.630 14.07 5.70 35.15 2.90
7286 16187 1.581934 TCGCTTTGATAGAATGGGCG 58.418 50.000 0.00 0.00 42.00 6.13
7292 16193 1.961277 GATAGAATGGGCGGGTGCG 60.961 63.158 0.00 0.00 44.10 5.34
7322 16229 5.758296 ACACGCTAGACCCACATTATAAATG 59.242 40.000 0.00 0.00 0.00 2.32
7323 16230 5.758296 CACGCTAGACCCACATTATAAATGT 59.242 40.000 0.00 0.00 0.00 2.71
7331 16238 9.832445 AGACCCACATTATAAATGTACTTGTAG 57.168 33.333 5.04 0.00 0.00 2.74
7349 16256 5.762825 TGTAGTTAACTATACTCTGGGCG 57.237 43.478 18.03 0.00 0.00 6.13
7367 16274 0.248702 CGAAAGCCTAGCTCGACCTC 60.249 60.000 0.00 0.00 38.25 3.85
7371 16278 1.226717 GCCTAGCTCGACCTCGTTG 60.227 63.158 0.00 0.00 40.80 4.10
7382 16289 1.143838 CCTCGTTGGATGCCGATGA 59.856 57.895 0.00 0.00 38.35 2.92
7383 16290 0.250038 CCTCGTTGGATGCCGATGAT 60.250 55.000 0.00 0.00 38.35 2.45
7388 16295 0.463620 TTGGATGCCGATGATGACGA 59.536 50.000 0.00 0.00 0.00 4.20
7390 16297 1.278172 GGATGCCGATGATGACGACG 61.278 60.000 0.00 0.00 0.00 5.12
7394 16301 1.299165 CCGATGATGACGACGTCCC 60.299 63.158 24.33 16.29 0.00 4.46
7395 16302 1.654440 CGATGATGACGACGTCCCG 60.654 63.158 24.33 15.19 0.00 5.14
7407 16314 2.671896 ACGTCCCGTCCTAGGATATT 57.328 50.000 16.27 0.00 33.69 1.28
7408 16315 2.236766 ACGTCCCGTCCTAGGATATTG 58.763 52.381 16.27 5.56 33.69 1.90
7456 16363 0.842467 CCCCTTCACCTCCCTTGTCT 60.842 60.000 0.00 0.00 0.00 3.41
7457 16364 1.068121 CCCTTCACCTCCCTTGTCTT 58.932 55.000 0.00 0.00 0.00 3.01
7458 16365 1.003696 CCCTTCACCTCCCTTGTCTTC 59.996 57.143 0.00 0.00 0.00 2.87
7459 16366 1.981495 CCTTCACCTCCCTTGTCTTCT 59.019 52.381 0.00 0.00 0.00 2.85
7460 16367 2.027653 CCTTCACCTCCCTTGTCTTCTC 60.028 54.545 0.00 0.00 0.00 2.87
7461 16368 2.704190 TCACCTCCCTTGTCTTCTCT 57.296 50.000 0.00 0.00 0.00 3.10
7462 16369 3.827817 TCACCTCCCTTGTCTTCTCTA 57.172 47.619 0.00 0.00 0.00 2.43
7463 16370 4.127918 TCACCTCCCTTGTCTTCTCTAA 57.872 45.455 0.00 0.00 0.00 2.10
7464 16371 4.090090 TCACCTCCCTTGTCTTCTCTAAG 58.910 47.826 0.00 0.00 0.00 2.18
7465 16372 4.090090 CACCTCCCTTGTCTTCTCTAAGA 58.910 47.826 0.00 0.00 39.47 2.10
7475 16382 3.870274 TCTTCTCTAAGACCGTGATCGA 58.130 45.455 0.00 0.00 36.80 3.59
7476 16383 3.622163 TCTTCTCTAAGACCGTGATCGAC 59.378 47.826 0.00 0.00 36.80 4.20
7477 16384 3.263489 TCTCTAAGACCGTGATCGACT 57.737 47.619 0.00 0.00 39.71 4.18
7478 16385 3.607741 TCTCTAAGACCGTGATCGACTT 58.392 45.455 0.00 0.00 39.71 3.01
7479 16386 4.008330 TCTCTAAGACCGTGATCGACTTT 58.992 43.478 0.00 0.00 39.71 2.66
7480 16387 4.092771 TCTAAGACCGTGATCGACTTTG 57.907 45.455 0.00 0.00 39.71 2.77
7481 16388 2.814280 AAGACCGTGATCGACTTTGT 57.186 45.000 0.00 0.00 39.71 2.83
7482 16389 2.065993 AGACCGTGATCGACTTTGTG 57.934 50.000 0.00 0.00 39.71 3.33
7483 16390 1.068474 GACCGTGATCGACTTTGTGG 58.932 55.000 0.00 0.00 39.71 4.17
7484 16391 0.949105 ACCGTGATCGACTTTGTGGC 60.949 55.000 0.00 0.00 39.71 5.01
7485 16392 0.670546 CCGTGATCGACTTTGTGGCT 60.671 55.000 0.00 0.00 39.71 4.75
7486 16393 0.439985 CGTGATCGACTTTGTGGCTG 59.560 55.000 0.00 0.00 39.71 4.85
7487 16394 0.798776 GTGATCGACTTTGTGGCTGG 59.201 55.000 0.00 0.00 0.00 4.85
7488 16395 0.955428 TGATCGACTTTGTGGCTGGC 60.955 55.000 0.00 0.00 0.00 4.85
7489 16396 0.674895 GATCGACTTTGTGGCTGGCT 60.675 55.000 2.00 0.00 0.00 4.75
7490 16397 0.674895 ATCGACTTTGTGGCTGGCTC 60.675 55.000 2.00 0.00 0.00 4.70
7491 16398 2.328099 CGACTTTGTGGCTGGCTCC 61.328 63.158 2.00 0.00 0.00 4.70
7492 16399 1.973812 GACTTTGTGGCTGGCTCCC 60.974 63.158 2.00 0.00 0.00 4.30
7493 16400 2.417558 GACTTTGTGGCTGGCTCCCT 62.418 60.000 2.00 0.00 0.00 4.20
7494 16401 1.228675 CTTTGTGGCTGGCTCCCTT 60.229 57.895 2.00 0.00 0.00 3.95
7495 16402 0.829182 CTTTGTGGCTGGCTCCCTTT 60.829 55.000 2.00 0.00 0.00 3.11
7496 16403 0.398381 TTTGTGGCTGGCTCCCTTTT 60.398 50.000 2.00 0.00 0.00 2.27
7497 16404 0.398381 TTGTGGCTGGCTCCCTTTTT 60.398 50.000 2.00 0.00 0.00 1.94
7498 16405 0.827507 TGTGGCTGGCTCCCTTTTTC 60.828 55.000 2.00 0.00 0.00 2.29
7499 16406 0.540597 GTGGCTGGCTCCCTTTTTCT 60.541 55.000 2.00 0.00 0.00 2.52
7500 16407 0.188342 TGGCTGGCTCCCTTTTTCTT 59.812 50.000 2.00 0.00 0.00 2.52
7501 16408 0.891373 GGCTGGCTCCCTTTTTCTTC 59.109 55.000 0.00 0.00 0.00 2.87
7502 16409 1.620822 GCTGGCTCCCTTTTTCTTCA 58.379 50.000 0.00 0.00 0.00 3.02
7503 16410 2.174360 GCTGGCTCCCTTTTTCTTCAT 58.826 47.619 0.00 0.00 0.00 2.57
7504 16411 2.094338 GCTGGCTCCCTTTTTCTTCATG 60.094 50.000 0.00 0.00 0.00 3.07
7505 16412 3.160269 CTGGCTCCCTTTTTCTTCATGT 58.840 45.455 0.00 0.00 0.00 3.21
7506 16413 3.575687 CTGGCTCCCTTTTTCTTCATGTT 59.424 43.478 0.00 0.00 0.00 2.71
7507 16414 3.966665 TGGCTCCCTTTTTCTTCATGTTT 59.033 39.130 0.00 0.00 0.00 2.83
7508 16415 4.039124 TGGCTCCCTTTTTCTTCATGTTTC 59.961 41.667 0.00 0.00 0.00 2.78
7509 16416 4.281941 GGCTCCCTTTTTCTTCATGTTTCT 59.718 41.667 0.00 0.00 0.00 2.52
7510 16417 5.225642 GCTCCCTTTTTCTTCATGTTTCTG 58.774 41.667 0.00 0.00 0.00 3.02
7511 16418 5.200368 TCCCTTTTTCTTCATGTTTCTGC 57.800 39.130 0.00 0.00 0.00 4.26
7512 16419 4.895297 TCCCTTTTTCTTCATGTTTCTGCT 59.105 37.500 0.00 0.00 0.00 4.24
7513 16420 4.986659 CCCTTTTTCTTCATGTTTCTGCTG 59.013 41.667 0.00 0.00 0.00 4.41
7514 16421 5.221303 CCCTTTTTCTTCATGTTTCTGCTGA 60.221 40.000 0.00 0.00 0.00 4.26
7515 16422 6.453092 CCTTTTTCTTCATGTTTCTGCTGAT 58.547 36.000 0.00 0.00 0.00 2.90
7516 16423 6.927381 CCTTTTTCTTCATGTTTCTGCTGATT 59.073 34.615 0.00 0.00 0.00 2.57
7517 16424 7.440255 CCTTTTTCTTCATGTTTCTGCTGATTT 59.560 33.333 0.00 0.00 0.00 2.17
7518 16425 8.721019 TTTTTCTTCATGTTTCTGCTGATTTT 57.279 26.923 0.00 0.00 0.00 1.82
7519 16426 7.935338 TTTCTTCATGTTTCTGCTGATTTTC 57.065 32.000 0.00 0.00 0.00 2.29
7520 16427 6.889301 TCTTCATGTTTCTGCTGATTTTCT 57.111 33.333 0.00 0.00 0.00 2.52
7521 16428 7.281040 TCTTCATGTTTCTGCTGATTTTCTT 57.719 32.000 0.00 0.00 0.00 2.52
7522 16429 7.365741 TCTTCATGTTTCTGCTGATTTTCTTC 58.634 34.615 0.00 0.00 0.00 2.87
7523 16430 6.638096 TCATGTTTCTGCTGATTTTCTTCA 57.362 33.333 0.00 0.00 0.00 3.02
7524 16431 6.441274 TCATGTTTCTGCTGATTTTCTTCAC 58.559 36.000 0.00 0.00 0.00 3.18
7525 16432 5.186996 TGTTTCTGCTGATTTTCTTCACC 57.813 39.130 0.00 0.00 0.00 4.02
7526 16433 4.644234 TGTTTCTGCTGATTTTCTTCACCA 59.356 37.500 0.00 0.00 0.00 4.17
7527 16434 5.126869 TGTTTCTGCTGATTTTCTTCACCAA 59.873 36.000 0.00 0.00 0.00 3.67
7528 16435 4.836125 TCTGCTGATTTTCTTCACCAAC 57.164 40.909 0.00 0.00 0.00 3.77
7529 16436 3.569701 TCTGCTGATTTTCTTCACCAACC 59.430 43.478 0.00 0.00 0.00 3.77
7530 16437 3.565307 TGCTGATTTTCTTCACCAACCT 58.435 40.909 0.00 0.00 0.00 3.50
7531 16438 3.569701 TGCTGATTTTCTTCACCAACCTC 59.430 43.478 0.00 0.00 0.00 3.85
7532 16439 3.365364 GCTGATTTTCTTCACCAACCTCG 60.365 47.826 0.00 0.00 0.00 4.63
7533 16440 2.552315 TGATTTTCTTCACCAACCTCGC 59.448 45.455 0.00 0.00 0.00 5.03
7534 16441 2.045561 TTTTCTTCACCAACCTCGCA 57.954 45.000 0.00 0.00 0.00 5.10
7535 16442 1.593196 TTTCTTCACCAACCTCGCAG 58.407 50.000 0.00 0.00 0.00 5.18
7536 16443 0.884704 TTCTTCACCAACCTCGCAGC 60.885 55.000 0.00 0.00 0.00 5.25
7537 16444 1.597854 CTTCACCAACCTCGCAGCA 60.598 57.895 0.00 0.00 0.00 4.41
7538 16445 1.845809 CTTCACCAACCTCGCAGCAC 61.846 60.000 0.00 0.00 0.00 4.40
7539 16446 3.357079 CACCAACCTCGCAGCACC 61.357 66.667 0.00 0.00 0.00 5.01
7540 16447 4.643387 ACCAACCTCGCAGCACCC 62.643 66.667 0.00 0.00 0.00 4.61
7551 16458 4.740822 AGCACCCGCCACCCATTC 62.741 66.667 0.00 0.00 39.83 2.67
7553 16460 4.402528 CACCCGCCACCCATTCGA 62.403 66.667 0.00 0.00 0.00 3.71
7554 16461 4.404098 ACCCGCCACCCATTCGAC 62.404 66.667 0.00 0.00 0.00 4.20
7556 16463 4.444838 CCGCCACCCATTCGACGA 62.445 66.667 0.00 0.00 0.00 4.20
7557 16464 2.433491 CGCCACCCATTCGACGAA 60.433 61.111 13.48 13.48 0.00 3.85
7558 16465 2.030401 CGCCACCCATTCGACGAAA 61.030 57.895 15.22 0.00 0.00 3.46
7559 16466 1.366111 CGCCACCCATTCGACGAAAT 61.366 55.000 15.22 0.60 0.00 2.17
7560 16467 0.098728 GCCACCCATTCGACGAAATG 59.901 55.000 15.22 12.57 36.57 2.32
7568 16475 4.661993 CATTCGACGAAATGGACAAGAA 57.338 40.909 15.22 0.00 33.80 2.52
7569 16476 4.641954 CATTCGACGAAATGGACAAGAAG 58.358 43.478 15.22 0.00 33.80 2.85
7570 16477 2.683968 TCGACGAAATGGACAAGAAGG 58.316 47.619 0.00 0.00 0.00 3.46
7571 16478 1.128692 CGACGAAATGGACAAGAAGGC 59.871 52.381 0.00 0.00 0.00 4.35
7572 16479 2.427506 GACGAAATGGACAAGAAGGCT 58.572 47.619 0.00 0.00 0.00 4.58
7573 16480 2.154462 ACGAAATGGACAAGAAGGCTG 58.846 47.619 0.00 0.00 0.00 4.85
7574 16481 1.135575 CGAAATGGACAAGAAGGCTGC 60.136 52.381 0.00 0.00 0.00 5.25
7575 16482 2.165998 GAAATGGACAAGAAGGCTGCT 58.834 47.619 0.00 0.00 0.00 4.24
7576 16483 1.542492 AATGGACAAGAAGGCTGCTG 58.458 50.000 0.00 0.00 0.00 4.41
7577 16484 0.323178 ATGGACAAGAAGGCTGCTGG 60.323 55.000 0.00 0.00 0.00 4.85
7578 16485 2.338785 GGACAAGAAGGCTGCTGGC 61.339 63.158 9.27 9.27 40.90 4.85
7579 16486 1.601759 GACAAGAAGGCTGCTGGCA 60.602 57.895 19.23 0.00 44.01 4.92
7580 16487 1.860484 GACAAGAAGGCTGCTGGCAC 61.860 60.000 19.23 12.12 44.01 5.01
7581 16488 1.602888 CAAGAAGGCTGCTGGCACT 60.603 57.895 19.23 14.03 44.01 4.40
7582 16489 1.602888 AAGAAGGCTGCTGGCACTG 60.603 57.895 19.23 0.00 44.01 3.66
7583 16490 3.060615 GAAGGCTGCTGGCACTGG 61.061 66.667 19.23 0.00 44.01 4.00
7590 16497 4.479993 GCTGGCACTGGCGAGGAT 62.480 66.667 0.00 0.00 45.01 3.24
7591 16498 2.202987 CTGGCACTGGCGAGGATC 60.203 66.667 0.00 0.00 41.62 3.36
7592 16499 3.746949 CTGGCACTGGCGAGGATCC 62.747 68.421 2.48 2.48 41.62 3.36
7593 16500 4.554036 GGCACTGGCGAGGATCCC 62.554 72.222 8.55 0.00 42.47 3.85
7594 16501 3.474570 GCACTGGCGAGGATCCCT 61.475 66.667 8.55 0.00 36.03 4.20
7595 16502 3.036429 GCACTGGCGAGGATCCCTT 62.036 63.158 8.55 0.00 31.76 3.95
7596 16503 1.604378 CACTGGCGAGGATCCCTTT 59.396 57.895 8.55 0.00 31.76 3.11
7597 16504 0.035056 CACTGGCGAGGATCCCTTTT 60.035 55.000 8.55 0.00 31.76 2.27
7598 16505 0.035056 ACTGGCGAGGATCCCTTTTG 60.035 55.000 8.55 0.00 31.76 2.44
7599 16506 1.378514 TGGCGAGGATCCCTTTTGC 60.379 57.895 8.55 5.60 31.76 3.68
7600 16507 2.121538 GGCGAGGATCCCTTTTGCC 61.122 63.158 13.58 13.58 38.69 4.52
7601 16508 1.077429 GCGAGGATCCCTTTTGCCT 60.077 57.895 8.55 0.00 31.76 4.75
7602 16509 1.098129 GCGAGGATCCCTTTTGCCTC 61.098 60.000 8.55 0.00 42.71 4.70
7603 16510 0.464554 CGAGGATCCCTTTTGCCTCC 60.465 60.000 8.55 0.00 43.10 4.30
7604 16511 0.922626 GAGGATCCCTTTTGCCTCCT 59.077 55.000 8.55 0.00 40.79 3.69
7605 16512 0.922626 AGGATCCCTTTTGCCTCCTC 59.077 55.000 8.55 0.00 30.45 3.71
7606 16513 0.106469 GGATCCCTTTTGCCTCCTCC 60.106 60.000 0.00 0.00 0.00 4.30
7607 16514 0.106469 GATCCCTTTTGCCTCCTCCC 60.106 60.000 0.00 0.00 0.00 4.30
7608 16515 1.584717 ATCCCTTTTGCCTCCTCCCC 61.585 60.000 0.00 0.00 0.00 4.81
7609 16516 2.044946 CCTTTTGCCTCCTCCCCG 60.045 66.667 0.00 0.00 0.00 5.73
7610 16517 2.602676 CCTTTTGCCTCCTCCCCGA 61.603 63.158 0.00 0.00 0.00 5.14
7611 16518 1.377333 CTTTTGCCTCCTCCCCGAC 60.377 63.158 0.00 0.00 0.00 4.79
7612 16519 3.248446 TTTTGCCTCCTCCCCGACG 62.248 63.158 0.00 0.00 0.00 5.12
7613 16520 4.689549 TTGCCTCCTCCCCGACGA 62.690 66.667 0.00 0.00 0.00 4.20
7617 16524 3.812019 CTCCTCCCCGACGACGTG 61.812 72.222 4.58 0.00 37.88 4.49
7620 16527 4.477975 CTCCCCGACGACGTGCTC 62.478 72.222 4.58 0.00 37.88 4.26
7625 16532 4.379143 CGACGACGTGCTCGACCA 62.379 66.667 16.04 0.00 46.14 4.02
7626 16533 2.799916 GACGACGTGCTCGACCAC 60.800 66.667 16.04 0.49 46.14 4.16
7627 16534 3.531920 GACGACGTGCTCGACCACA 62.532 63.158 16.04 0.00 46.14 4.17
7628 16535 2.126463 CGACGTGCTCGACCACAT 60.126 61.111 16.04 0.00 46.14 3.21
7629 16536 2.152699 CGACGTGCTCGACCACATC 61.153 63.158 16.04 4.37 46.14 3.06
7637 16544 4.988065 CGACCACATCGTGTCCTT 57.012 55.556 0.00 0.00 46.25 3.36
7638 16545 3.210857 CGACCACATCGTGTCCTTT 57.789 52.632 0.00 0.00 46.25 3.11
7639 16546 1.068474 CGACCACATCGTGTCCTTTC 58.932 55.000 0.00 0.00 46.25 2.62
7640 16547 1.336887 CGACCACATCGTGTCCTTTCT 60.337 52.381 0.00 0.00 46.25 2.52
7641 16548 2.069273 GACCACATCGTGTCCTTTCTG 58.931 52.381 0.00 0.00 0.00 3.02
7642 16549 0.798776 CCACATCGTGTCCTTTCTGC 59.201 55.000 0.00 0.00 0.00 4.26
7643 16550 0.798776 CACATCGTGTCCTTTCTGCC 59.201 55.000 0.00 0.00 0.00 4.85
7644 16551 0.670546 ACATCGTGTCCTTTCTGCCG 60.671 55.000 0.00 0.00 0.00 5.69
7645 16552 1.079127 ATCGTGTCCTTTCTGCCGG 60.079 57.895 0.00 0.00 0.00 6.13
7646 16553 2.521958 ATCGTGTCCTTTCTGCCGGG 62.522 60.000 2.18 0.00 0.00 5.73
7647 16554 2.359975 GTGTCCTTTCTGCCGGGG 60.360 66.667 2.18 0.00 0.00 5.73
7648 16555 3.646715 TGTCCTTTCTGCCGGGGG 61.647 66.667 2.18 0.00 0.00 5.40
7649 16556 3.327404 GTCCTTTCTGCCGGGGGA 61.327 66.667 2.18 0.00 0.00 4.81
7650 16557 2.286121 TCCTTTCTGCCGGGGGAT 60.286 61.111 2.18 0.00 0.00 3.85
7651 16558 2.124151 CCTTTCTGCCGGGGGATG 60.124 66.667 2.18 0.00 0.00 3.51
7652 16559 2.679342 CCTTTCTGCCGGGGGATGA 61.679 63.158 2.18 0.00 0.00 2.92
7653 16560 1.302949 CTTTCTGCCGGGGGATGAA 59.697 57.895 2.18 0.00 0.00 2.57
7654 16561 0.749454 CTTTCTGCCGGGGGATGAAG 60.749 60.000 2.18 0.00 0.00 3.02
7655 16562 2.837031 TTTCTGCCGGGGGATGAAGC 62.837 60.000 2.18 0.00 0.00 3.86
7656 16563 4.883354 CTGCCGGGGGATGAAGCC 62.883 72.222 2.18 0.00 0.00 4.35
7663 16570 3.001514 GGGATGAAGCCCTGCAGA 58.998 61.111 17.39 0.00 45.12 4.26
7664 16571 1.452833 GGGATGAAGCCCTGCAGAC 60.453 63.158 17.39 6.97 45.12 3.51
7665 16572 1.300963 GGATGAAGCCCTGCAGACA 59.699 57.895 17.39 7.56 0.00 3.41
7666 16573 0.106819 GGATGAAGCCCTGCAGACAT 60.107 55.000 17.39 11.94 0.00 3.06
7667 16574 1.022735 GATGAAGCCCTGCAGACATG 58.977 55.000 17.39 1.49 0.00 3.21
7677 16584 3.791539 CAGACATGCCTGCTCGAC 58.208 61.111 0.00 0.00 0.00 4.20
7678 16585 1.079612 CAGACATGCCTGCTCGACA 60.080 57.895 0.00 0.00 0.00 4.35
7679 16586 0.671472 CAGACATGCCTGCTCGACAA 60.671 55.000 0.00 0.00 0.00 3.18
7680 16587 0.671781 AGACATGCCTGCTCGACAAC 60.672 55.000 0.00 0.00 0.00 3.32
7681 16588 1.639298 GACATGCCTGCTCGACAACC 61.639 60.000 0.00 0.00 0.00 3.77
7682 16589 1.672030 CATGCCTGCTCGACAACCA 60.672 57.895 0.00 0.00 0.00 3.67
7683 16590 1.376424 ATGCCTGCTCGACAACCAG 60.376 57.895 0.00 0.00 0.00 4.00
7684 16591 2.031163 GCCTGCTCGACAACCAGT 59.969 61.111 0.00 0.00 0.00 4.00
7685 16592 2.320587 GCCTGCTCGACAACCAGTG 61.321 63.158 0.00 0.00 0.00 3.66
7686 16593 1.669115 CCTGCTCGACAACCAGTGG 60.669 63.158 7.91 7.91 0.00 4.00
7687 16594 2.280797 TGCTCGACAACCAGTGGC 60.281 61.111 9.78 0.00 0.00 5.01
7692 16599 3.330275 GACAACCAGTGGCGTGAC 58.670 61.111 18.07 9.68 0.00 3.67
7693 16600 2.203153 ACAACCAGTGGCGTGACC 60.203 61.111 18.07 0.00 39.84 4.02
7694 16601 2.111043 CAACCAGTGGCGTGACCT 59.889 61.111 9.78 0.00 40.22 3.85
7695 16602 1.961277 CAACCAGTGGCGTGACCTC 60.961 63.158 9.78 0.00 40.22 3.85
7696 16603 2.140792 AACCAGTGGCGTGACCTCT 61.141 57.895 9.78 0.00 43.19 3.69
7697 16604 0.830444 AACCAGTGGCGTGACCTCTA 60.830 55.000 9.78 0.00 40.37 2.43
7698 16605 1.251527 ACCAGTGGCGTGACCTCTAG 61.252 60.000 9.78 0.00 40.37 2.43
7699 16606 0.965866 CCAGTGGCGTGACCTCTAGA 60.966 60.000 0.00 0.00 40.37 2.43
7700 16607 0.453793 CAGTGGCGTGACCTCTAGAG 59.546 60.000 13.18 13.18 40.37 2.43
7710 16617 2.768834 CCTCTAGAGGCGCAAAACC 58.231 57.895 25.73 0.00 42.44 3.27
7711 16618 0.036388 CCTCTAGAGGCGCAAAACCA 60.036 55.000 25.73 0.00 42.44 3.67
7712 16619 1.363744 CTCTAGAGGCGCAAAACCAG 58.636 55.000 10.83 0.00 0.00 4.00
7713 16620 0.673644 TCTAGAGGCGCAAAACCAGC 60.674 55.000 10.83 0.00 0.00 4.85
7718 16625 2.504681 GCGCAAAACCAGCCATCG 60.505 61.111 0.30 0.00 0.00 3.84
7719 16626 2.504681 CGCAAAACCAGCCATCGC 60.505 61.111 0.00 0.00 0.00 4.58
7721 16628 1.290009 GCAAAACCAGCCATCGCTT 59.710 52.632 0.00 0.00 45.55 4.68
7722 16629 0.733909 GCAAAACCAGCCATCGCTTC 60.734 55.000 0.00 0.00 45.55 3.86
7723 16630 0.597568 CAAAACCAGCCATCGCTTCA 59.402 50.000 0.00 0.00 45.55 3.02
7724 16631 1.203052 CAAAACCAGCCATCGCTTCAT 59.797 47.619 0.00 0.00 45.55 2.57
7725 16632 1.098050 AAACCAGCCATCGCTTCATC 58.902 50.000 0.00 0.00 45.55 2.92
7726 16633 0.254178 AACCAGCCATCGCTTCATCT 59.746 50.000 0.00 0.00 45.55 2.90
7727 16634 0.254178 ACCAGCCATCGCTTCATCTT 59.746 50.000 0.00 0.00 45.55 2.40
7728 16635 1.340405 ACCAGCCATCGCTTCATCTTT 60.340 47.619 0.00 0.00 45.55 2.52
7729 16636 1.065102 CCAGCCATCGCTTCATCTTTG 59.935 52.381 0.00 0.00 45.55 2.77
7730 16637 2.011947 CAGCCATCGCTTCATCTTTGA 58.988 47.619 0.00 0.00 45.55 2.69
7731 16638 2.012673 AGCCATCGCTTCATCTTTGAC 58.987 47.619 0.00 0.00 45.55 3.18
7732 16639 1.267732 GCCATCGCTTCATCTTTGACG 60.268 52.381 0.00 0.00 0.00 4.35
7733 16640 2.270923 CCATCGCTTCATCTTTGACGA 58.729 47.619 0.00 0.00 35.61 4.20
7734 16641 2.672874 CCATCGCTTCATCTTTGACGAA 59.327 45.455 0.00 0.00 35.04 3.85
7735 16642 3.310774 CCATCGCTTCATCTTTGACGAAT 59.689 43.478 0.00 0.00 35.04 3.34
7736 16643 3.997319 TCGCTTCATCTTTGACGAATG 57.003 42.857 0.00 0.00 30.26 2.67
7737 16644 2.672874 TCGCTTCATCTTTGACGAATGG 59.327 45.455 0.00 0.00 30.26 3.16
7738 16645 2.416547 CGCTTCATCTTTGACGAATGGT 59.583 45.455 0.00 0.00 0.00 3.55
7739 16646 3.484229 CGCTTCATCTTTGACGAATGGTC 60.484 47.826 0.00 0.00 46.27 4.02
7750 16657 3.885358 GACGAATGGTCAAGTTTCAACC 58.115 45.455 0.00 0.00 45.36 3.77
7751 16658 2.289547 ACGAATGGTCAAGTTTCAACCG 59.710 45.455 0.00 0.00 35.76 4.44
7752 16659 2.661594 GAATGGTCAAGTTTCAACCGC 58.338 47.619 0.00 0.00 35.76 5.68
7753 16660 1.686355 ATGGTCAAGTTTCAACCGCA 58.314 45.000 0.00 0.00 35.76 5.69
7754 16661 1.464734 TGGTCAAGTTTCAACCGCAA 58.535 45.000 0.00 0.00 35.76 4.85
7755 16662 1.403679 TGGTCAAGTTTCAACCGCAAG 59.596 47.619 0.00 0.00 35.76 4.01
7756 16663 1.477105 GTCAAGTTTCAACCGCAAGC 58.523 50.000 0.00 0.00 0.00 4.01
7757 16664 0.028770 TCAAGTTTCAACCGCAAGCG 59.971 50.000 7.60 7.60 39.44 4.68
7758 16665 0.248458 CAAGTTTCAACCGCAAGCGT 60.248 50.000 13.80 0.00 37.81 5.07
7759 16666 0.454196 AAGTTTCAACCGCAAGCGTT 59.546 45.000 13.80 5.22 37.81 4.84
7760 16667 0.454196 AGTTTCAACCGCAAGCGTTT 59.546 45.000 13.80 2.06 37.81 3.60
7761 16668 0.843872 GTTTCAACCGCAAGCGTTTC 59.156 50.000 13.80 0.00 37.81 2.78
7762 16669 0.452184 TTTCAACCGCAAGCGTTTCA 59.548 45.000 13.80 0.00 37.81 2.69
7763 16670 0.028770 TTCAACCGCAAGCGTTTCAG 59.971 50.000 13.80 0.00 37.81 3.02
7764 16671 1.092921 TCAACCGCAAGCGTTTCAGT 61.093 50.000 13.80 0.55 37.81 3.41
7765 16672 0.657368 CAACCGCAAGCGTTTCAGTC 60.657 55.000 13.80 0.00 37.81 3.51
7766 16673 1.092921 AACCGCAAGCGTTTCAGTCA 61.093 50.000 13.80 0.00 37.81 3.41
7767 16674 1.205064 CCGCAAGCGTTTCAGTCAG 59.795 57.895 13.80 0.00 37.81 3.51
7768 16675 1.439365 CGCAAGCGTTTCAGTCAGC 60.439 57.895 6.25 0.00 34.35 4.26
7769 16676 1.835483 CGCAAGCGTTTCAGTCAGCT 61.835 55.000 6.25 0.00 42.35 4.24
7770 16677 0.110464 GCAAGCGTTTCAGTCAGCTC 60.110 55.000 0.00 0.00 39.25 4.09
7771 16678 0.162507 CAAGCGTTTCAGTCAGCTCG 59.837 55.000 0.00 0.00 39.25 5.03
7772 16679 0.249489 AAGCGTTTCAGTCAGCTCGT 60.249 50.000 0.00 0.00 39.25 4.18
7773 16680 0.941463 AGCGTTTCAGTCAGCTCGTG 60.941 55.000 0.00 0.00 34.48 4.35
7774 16681 0.939577 GCGTTTCAGTCAGCTCGTGA 60.940 55.000 0.00 0.00 0.00 4.35
7775 16682 1.487482 CGTTTCAGTCAGCTCGTGAA 58.513 50.000 0.00 0.00 36.74 3.18
7776 16683 1.453524 CGTTTCAGTCAGCTCGTGAAG 59.546 52.381 2.97 0.00 36.74 3.02
7788 16695 3.582444 CTCGTGAAGCTGATAATGCAC 57.418 47.619 0.00 0.00 0.00 4.57
7789 16696 2.279741 TCGTGAAGCTGATAATGCACC 58.720 47.619 0.00 0.00 0.00 5.01
7790 16697 2.093500 TCGTGAAGCTGATAATGCACCT 60.093 45.455 0.00 0.00 0.00 4.00
7791 16698 2.286294 CGTGAAGCTGATAATGCACCTC 59.714 50.000 0.00 0.00 0.00 3.85
7792 16699 3.273434 GTGAAGCTGATAATGCACCTCA 58.727 45.455 0.00 0.00 0.00 3.86
7793 16700 3.311871 GTGAAGCTGATAATGCACCTCAG 59.688 47.826 14.58 14.58 39.50 3.35
7794 16701 2.634815 AGCTGATAATGCACCTCAGG 57.365 50.000 18.46 0.00 37.47 3.86
7795 16702 1.142465 AGCTGATAATGCACCTCAGGG 59.858 52.381 18.46 2.10 37.47 4.45
7796 16703 1.141657 GCTGATAATGCACCTCAGGGA 59.858 52.381 18.46 0.00 37.47 4.20
7797 16704 2.421952 GCTGATAATGCACCTCAGGGAA 60.422 50.000 18.46 0.00 37.47 3.97
7798 16705 3.749954 GCTGATAATGCACCTCAGGGAAT 60.750 47.826 18.46 0.00 37.47 3.01
7799 16706 3.819337 CTGATAATGCACCTCAGGGAATG 59.181 47.826 12.12 0.00 34.17 2.67
7800 16707 2.734755 TAATGCACCTCAGGGAATGG 57.265 50.000 0.00 0.00 36.25 3.16
7801 16708 0.706433 AATGCACCTCAGGGAATGGT 59.294 50.000 0.00 0.00 36.25 3.55
7802 16709 1.595311 ATGCACCTCAGGGAATGGTA 58.405 50.000 0.00 0.00 36.25 3.25
7803 16710 0.911769 TGCACCTCAGGGAATGGTAG 59.088 55.000 0.00 0.00 36.25 3.18
7804 16711 1.204146 GCACCTCAGGGAATGGTAGA 58.796 55.000 0.00 0.00 36.25 2.59
7805 16712 1.771255 GCACCTCAGGGAATGGTAGAT 59.229 52.381 0.00 0.00 36.25 1.98
7806 16713 2.173569 GCACCTCAGGGAATGGTAGATT 59.826 50.000 0.00 0.00 36.25 2.40
7807 16714 3.813443 CACCTCAGGGAATGGTAGATTG 58.187 50.000 0.00 0.00 36.25 2.67
7808 16715 3.455910 CACCTCAGGGAATGGTAGATTGA 59.544 47.826 0.00 0.00 36.25 2.57
7809 16716 3.456277 ACCTCAGGGAATGGTAGATTGAC 59.544 47.826 0.00 0.00 36.25 3.18
7810 16717 3.493350 CCTCAGGGAATGGTAGATTGACG 60.493 52.174 0.00 0.00 33.58 4.35
7811 16718 2.434336 TCAGGGAATGGTAGATTGACGG 59.566 50.000 0.00 0.00 0.00 4.79
7812 16719 1.141053 AGGGAATGGTAGATTGACGGC 59.859 52.381 0.00 0.00 0.00 5.68
7813 16720 1.134220 GGGAATGGTAGATTGACGGCA 60.134 52.381 0.00 0.00 0.00 5.69
7814 16721 2.487265 GGGAATGGTAGATTGACGGCAT 60.487 50.000 0.00 0.00 0.00 4.40
7815 16722 2.549754 GGAATGGTAGATTGACGGCATG 59.450 50.000 0.00 0.00 0.00 4.06
7816 16723 2.260844 ATGGTAGATTGACGGCATGG 57.739 50.000 0.00 0.00 0.00 3.66
7817 16724 0.463654 TGGTAGATTGACGGCATGGC 60.464 55.000 9.69 9.69 0.00 4.40
7818 16725 1.166531 GGTAGATTGACGGCATGGCC 61.167 60.000 14.46 0.00 46.75 5.36
7830 16737 2.747396 GCATGGCCACAAGATTGAAA 57.253 45.000 8.16 0.00 0.00 2.69
7831 16738 3.255969 GCATGGCCACAAGATTGAAAT 57.744 42.857 8.16 0.00 0.00 2.17
7832 16739 2.933906 GCATGGCCACAAGATTGAAATG 59.066 45.455 8.16 0.00 0.00 2.32
7833 16740 3.527533 CATGGCCACAAGATTGAAATGG 58.472 45.455 8.16 0.00 0.00 3.16
7838 16745 2.933906 CCACAAGATTGAAATGGCATGC 59.066 45.455 9.90 9.90 0.00 4.06
7839 16746 3.369052 CCACAAGATTGAAATGGCATGCT 60.369 43.478 18.92 0.00 0.00 3.79
7840 16747 3.863424 CACAAGATTGAAATGGCATGCTC 59.137 43.478 18.92 7.73 0.00 4.26
7841 16748 3.767673 ACAAGATTGAAATGGCATGCTCT 59.232 39.130 18.92 6.83 0.00 4.09
7842 16749 4.112634 CAAGATTGAAATGGCATGCTCTG 58.887 43.478 18.92 0.00 0.00 3.35
7843 16750 3.628008 AGATTGAAATGGCATGCTCTGA 58.372 40.909 18.92 0.00 0.00 3.27
7844 16751 4.021229 AGATTGAAATGGCATGCTCTGAA 58.979 39.130 18.92 3.91 0.00 3.02
7845 16752 4.649674 AGATTGAAATGGCATGCTCTGAAT 59.350 37.500 18.92 8.55 0.00 2.57
7846 16753 4.811969 TTGAAATGGCATGCTCTGAATT 57.188 36.364 18.92 7.37 0.00 2.17
7847 16754 5.918426 TTGAAATGGCATGCTCTGAATTA 57.082 34.783 18.92 0.00 0.00 1.40
7848 16755 6.474140 TTGAAATGGCATGCTCTGAATTAT 57.526 33.333 18.92 0.00 0.00 1.28
7849 16756 7.585579 TTGAAATGGCATGCTCTGAATTATA 57.414 32.000 18.92 1.42 0.00 0.98
7850 16757 7.585579 TGAAATGGCATGCTCTGAATTATAA 57.414 32.000 18.92 0.00 0.00 0.98
7851 16758 8.009622 TGAAATGGCATGCTCTGAATTATAAA 57.990 30.769 18.92 0.00 0.00 1.40
7852 16759 8.476447 TGAAATGGCATGCTCTGAATTATAAAA 58.524 29.630 18.92 0.00 0.00 1.52
7853 16760 9.316730 GAAATGGCATGCTCTGAATTATAAAAA 57.683 29.630 18.92 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
174 175 3.268103 ATTTTCAGGGAGCCGCCGT 62.268 57.895 0.00 0.00 37.63 5.68
235 238 1.300931 CCCCACCGATGATGCTACG 60.301 63.158 0.00 0.00 0.00 3.51
264 267 1.739338 GACAGATCCGCCGGAGACAT 61.739 60.000 13.12 0.00 34.05 3.06
306 309 1.974680 GAACGAAGACGAACGACGAAT 59.025 47.619 0.00 0.00 45.77 3.34
371 374 1.073025 ACCAGAACAGCAATCGCCA 59.927 52.632 0.00 0.00 39.83 5.69
439 442 0.885196 GAGCCGGGCAAACATTGTTA 59.115 50.000 23.09 0.00 0.00 2.41
461 464 1.810030 GTCATCACCCGTTCCTCGC 60.810 63.158 0.00 0.00 38.35 5.03
500 503 2.390938 CGACGACTACAAGCACTGAAA 58.609 47.619 0.00 0.00 0.00 2.69
550 553 9.880157 AGTACAACGGACACTACAAATAATAAT 57.120 29.630 0.00 0.00 0.00 1.28
560 563 6.127810 TCATGATAGTACAACGGACACTAC 57.872 41.667 0.00 0.00 0.00 2.73
578 581 7.472334 TCGATCTATTCATCTTCCATCATGA 57.528 36.000 0.00 0.00 0.00 3.07
665 668 1.147376 TTGGTGTAACAGTGCCGCT 59.853 52.632 0.00 0.00 39.98 5.52
666 669 1.281656 GTTGGTGTAACAGTGCCGC 59.718 57.895 0.00 0.00 39.98 6.53
667 670 2.696566 TGTTGGTGTAACAGTGCCG 58.303 52.632 0.00 0.00 44.07 5.69
682 685 4.539083 TGTGGTGAGCGCGGTGTT 62.539 61.111 18.92 0.00 0.00 3.32
711 715 2.103042 GTGCTGTCCATGCCGAGAC 61.103 63.158 0.00 0.00 0.00 3.36
713 717 2.046988 TGTGCTGTCCATGCCGAG 60.047 61.111 0.00 0.00 0.00 4.63
722 726 3.986006 TCCCGTCGGTGTGCTGTC 61.986 66.667 11.06 0.00 0.00 3.51
804 808 2.032071 AGGTGTAACAGTGCCGCC 59.968 61.111 0.00 0.00 39.98 6.13
871 875 3.432608 GGCCGCCTTTTATACTACAAGGA 60.433 47.826 0.71 0.00 39.73 3.36
1156 3278 8.966868 GTATGAATCTAGGGAAACAATTTTGGA 58.033 33.333 0.00 0.00 0.00 3.53
1157 3279 8.748412 TGTATGAATCTAGGGAAACAATTTTGG 58.252 33.333 0.00 0.00 0.00 3.28
1160 3282 8.917088 CCATGTATGAATCTAGGGAAACAATTT 58.083 33.333 0.00 0.00 0.00 1.82
1161 3283 8.061304 ACCATGTATGAATCTAGGGAAACAATT 58.939 33.333 0.00 0.00 0.00 2.32
1162 3284 7.503566 CACCATGTATGAATCTAGGGAAACAAT 59.496 37.037 0.00 0.00 0.00 2.71
1194 3316 1.453155 ATAACACAGAAAGCAGCCCG 58.547 50.000 0.00 0.00 0.00 6.13
1236 3392 8.736742 CATGACAATTCGTACTATTTGCAAATC 58.263 33.333 27.28 12.59 0.00 2.17
1284 3482 8.948631 ACTGGACACATGATAATTTACACTAG 57.051 34.615 0.00 0.00 0.00 2.57
1325 3541 2.159627 CGAAGAAAAAGATGGGTGTCGG 59.840 50.000 0.00 0.00 0.00 4.79
1391 3620 1.187087 ACGGCTGGAAACTAGAGGAG 58.813 55.000 0.00 0.00 0.00 3.69
1393 3622 1.726853 CAACGGCTGGAAACTAGAGG 58.273 55.000 0.00 0.00 0.00 3.69
1437 3681 3.259020 CGCCGATTTTAGCGCCGA 61.259 61.111 2.29 0.00 46.50 5.54
1490 3862 1.612676 AAAAAGCGGGTCTGGGTAAC 58.387 50.000 0.00 0.00 0.00 2.50
1492 3864 3.505480 TTTAAAAAGCGGGTCTGGGTA 57.495 42.857 0.00 0.00 0.00 3.69
1493 3865 2.368311 TTTAAAAAGCGGGTCTGGGT 57.632 45.000 0.00 0.00 0.00 4.51
1543 3950 7.778470 TGAATGTTAAGTTTGCCGAATTTTT 57.222 28.000 0.00 0.00 0.00 1.94
1560 3987 6.960992 CGACGAACATGTTGAATATGAATGTT 59.039 34.615 17.58 0.00 42.53 2.71
1624 4063 2.956964 CCGCGCTGATCGACTTCC 60.957 66.667 5.56 0.00 41.67 3.46
1653 4143 3.745803 GGAGAAGGCCGACGACGT 61.746 66.667 0.00 0.00 37.88 4.34
1985 4577 3.673597 ACCTCCTCGGCTCCTCCA 61.674 66.667 0.00 0.00 35.61 3.86
2011 4603 3.390521 TCATCAACGAGGGCGGCT 61.391 61.111 9.56 0.00 43.17 5.52
2994 5995 1.903404 CTCCCCAGGCGTTTTTGCT 60.903 57.895 0.00 0.00 34.52 3.91
3036 6037 3.264947 TGCACTACAAGCTAAGAGCATG 58.735 45.455 10.34 1.55 45.56 4.06
3087 6088 6.710597 TCATACCACACATAGGAAGACTAC 57.289 41.667 0.00 0.00 33.70 2.73
3090 6091 6.582636 TGATTCATACCACACATAGGAAGAC 58.417 40.000 0.00 0.00 0.00 3.01
3174 6175 6.878317 TCTTACAATAGTGAACATGGAGAGG 58.122 40.000 0.00 0.00 0.00 3.69
3181 6187 8.321353 TCCAAGACATCTTACAATAGTGAACAT 58.679 33.333 0.00 0.00 34.28 2.71
3182 6188 7.676004 TCCAAGACATCTTACAATAGTGAACA 58.324 34.615 0.00 0.00 34.28 3.18
3261 6274 2.036217 AGTTGGTGTCGACGTTAATGGA 59.964 45.455 11.62 0.00 32.56 3.41
3311 6324 5.070714 TGTGCCTTTACAACTAACAGTAGGA 59.929 40.000 0.00 0.00 0.00 2.94
3347 6360 2.035449 TGACAAGTAACTGAGGGTGACG 59.965 50.000 0.00 0.00 34.50 4.35
3429 6442 2.120232 GAGCCACTCGATTCATACACG 58.880 52.381 0.00 0.00 0.00 4.49
3469 6482 2.158623 AGAAACAGGTGTGCCATTGAGA 60.159 45.455 0.00 0.00 37.19 3.27
3564 6687 9.722056 CAATCCAAACAAGCTAATGAGTAATAC 57.278 33.333 0.00 0.00 0.00 1.89
3653 6814 9.372369 GCCTAAATAGCTAGGTAATCACTATTG 57.628 37.037 5.62 0.00 40.68 1.90
3662 6824 8.029782 TGAAATGAGCCTAAATAGCTAGGTAA 57.970 34.615 5.62 0.00 41.75 2.85
4152 8164 0.385751 CTCACACACAGACCGACACT 59.614 55.000 0.00 0.00 0.00 3.55
4246 8260 7.010552 CGCTAATGCAACTAGTCTCAGTTTATT 59.989 37.037 0.00 0.00 36.61 1.40
4275 8294 7.095187 GGTTTCGTCTATCAACTCAATTCAGTT 60.095 37.037 0.00 0.00 37.05 3.16
4312 8344 4.218417 ACATTCAAGTGTGTAAATCAGGCC 59.782 41.667 0.00 0.00 0.00 5.19
4503 9047 9.807921 TCTGACCAAGTTATAGGAAAATTTTCT 57.192 29.630 25.86 16.13 37.35 2.52
4602 9147 4.009002 GGTCCGGACATATAGTAGAGGTC 58.991 52.174 34.40 9.33 0.00 3.85
4670 9229 4.065088 GACTACCGGTATCCATACGTACA 58.935 47.826 16.25 0.00 34.11 2.90
4690 9249 0.451783 GGTCAAATGCATGTCCGGAC 59.548 55.000 28.17 28.17 0.00 4.79
4693 9252 2.164017 TGATTGGTCAAATGCATGTCCG 59.836 45.455 0.00 0.00 32.05 4.79
4724 9584 0.547712 TGGTTGGGAGAAGAGAGGGG 60.548 60.000 0.00 0.00 0.00 4.79
4798 9671 6.642707 AATCACAAAGTATCCGGTTGAAAA 57.357 33.333 8.59 0.00 0.00 2.29
4880 9753 5.989777 GCCGTAAATGTCTCCAGTATATGTT 59.010 40.000 0.00 0.00 0.00 2.71
4889 9762 2.301870 AGTTGAGCCGTAAATGTCTCCA 59.698 45.455 0.00 0.00 0.00 3.86
4908 9781 5.621193 ACGCTATTAAGGCATATCCAAAGT 58.379 37.500 4.50 0.00 37.29 2.66
4975 10246 1.552337 ACATCGTCATCTCCAGTGCTT 59.448 47.619 0.00 0.00 0.00 3.91
5017 10288 0.615331 GGTCAGAGTGGCAGATTCCA 59.385 55.000 0.00 0.00 0.00 3.53
5020 10291 2.234908 GTGTAGGTCAGAGTGGCAGATT 59.765 50.000 0.00 0.00 0.00 2.40
5064 10335 3.128375 CCATGGGGTATTTGGCGC 58.872 61.111 2.85 0.00 0.00 6.53
5229 10500 3.354233 TGTAGGTGGGGATTATGCCTA 57.646 47.619 2.15 0.00 0.00 3.93
5420 10691 1.528824 CGAGGTGCATCCCAGGAAT 59.471 57.895 0.00 0.00 36.75 3.01
5667 10946 3.005472 ACCATATATCTTGGTCGTGTCCG 59.995 47.826 4.75 0.00 44.15 4.79
5729 11009 5.501156 ACTTCAATGGTCATAGGTCCTTTC 58.499 41.667 0.00 0.00 0.00 2.62
5740 11020 5.008613 GTCTTTGCAAGTACTTCAATGGTCA 59.991 40.000 20.53 9.32 0.00 4.02
5870 11443 2.031807 GTCTTCGAGCGATAGTAGCACA 59.968 50.000 0.00 0.00 37.01 4.57
5945 11567 3.770388 TGTTACTCGTGGATGATGGGTTA 59.230 43.478 0.00 0.00 0.00 2.85
5951 11573 4.020573 TCCTTGTTGTTACTCGTGGATGAT 60.021 41.667 0.00 0.00 0.00 2.45
5979 11601 4.994217 GCATTATCAAGGAGCCTAGAAGAC 59.006 45.833 0.00 0.00 0.00 3.01
6058 11680 1.565288 TCACTCCAATGGATGATGGCA 59.435 47.619 0.87 0.00 36.62 4.92
6107 11730 3.181519 GGATTTTCGTCTCTCGCCTTTTC 60.182 47.826 0.00 0.00 39.67 2.29
6113 11736 0.175989 AGGGGATTTTCGTCTCTCGC 59.824 55.000 0.00 0.00 39.67 5.03
6121 11744 1.279025 TGGAGGGGAGGGGATTTTCG 61.279 60.000 0.00 0.00 0.00 3.46
6151 11774 1.226491 CGCTCCGGTCGTCGTTTAT 60.226 57.895 0.00 0.00 37.11 1.40
6152 11775 2.176546 CGCTCCGGTCGTCGTTTA 59.823 61.111 0.00 0.00 37.11 2.01
6191 11819 1.271163 CCCGTGAAGAAACCTTAGCCA 60.271 52.381 0.00 0.00 0.00 4.75
6638 13922 4.092821 TCTTGTTCGCTGTACATACAATGC 59.907 41.667 0.00 0.00 35.50 3.56
6684 13968 2.204136 TGGGTGTCCCTCATGCCT 60.204 61.111 6.38 0.00 45.70 4.75
6895 14185 5.189928 TGTTTCTTGCTACTTCCTGACAAA 58.810 37.500 0.00 0.00 0.00 2.83
6901 14191 6.959639 TTTGATTGTTTCTTGCTACTTCCT 57.040 33.333 0.00 0.00 0.00 3.36
6902 14192 8.593492 ATTTTTGATTGTTTCTTGCTACTTCC 57.407 30.769 0.00 0.00 0.00 3.46
6904 14194 9.822185 AGAATTTTTGATTGTTTCTTGCTACTT 57.178 25.926 0.00 0.00 0.00 2.24
6997 15890 8.709308 ACTGCTACTATCTTCCTTCATTTACAT 58.291 33.333 0.00 0.00 0.00 2.29
6999 15892 9.465985 GTACTGCTACTATCTTCCTTCATTTAC 57.534 37.037 0.00 0.00 0.00 2.01
7000 15893 9.197306 TGTACTGCTACTATCTTCCTTCATTTA 57.803 33.333 0.00 0.00 0.00 1.40
7001 15894 8.079211 TGTACTGCTACTATCTTCCTTCATTT 57.921 34.615 0.00 0.00 0.00 2.32
7002 15895 7.661536 TGTACTGCTACTATCTTCCTTCATT 57.338 36.000 0.00 0.00 0.00 2.57
7003 15896 7.507277 TCATGTACTGCTACTATCTTCCTTCAT 59.493 37.037 0.00 0.00 0.00 2.57
7004 15897 6.833933 TCATGTACTGCTACTATCTTCCTTCA 59.166 38.462 0.00 0.00 0.00 3.02
7005 15898 7.278461 TCATGTACTGCTACTATCTTCCTTC 57.722 40.000 0.00 0.00 0.00 3.46
7006 15899 7.661536 TTCATGTACTGCTACTATCTTCCTT 57.338 36.000 0.00 0.00 0.00 3.36
7007 15900 7.847711 ATTCATGTACTGCTACTATCTTCCT 57.152 36.000 0.00 0.00 0.00 3.36
7014 15907 9.678941 CGAAGAATAATTCATGTACTGCTACTA 57.321 33.333 0.00 0.00 0.00 1.82
7015 15908 8.198109 ACGAAGAATAATTCATGTACTGCTACT 58.802 33.333 0.00 0.00 0.00 2.57
7016 15909 8.354011 ACGAAGAATAATTCATGTACTGCTAC 57.646 34.615 0.00 0.00 0.00 3.58
7018 15911 8.982685 CATACGAAGAATAATTCATGTACTGCT 58.017 33.333 0.00 0.00 0.00 4.24
7019 15912 8.223769 CCATACGAAGAATAATTCATGTACTGC 58.776 37.037 0.00 0.00 0.00 4.40
7020 15913 8.223769 GCCATACGAAGAATAATTCATGTACTG 58.776 37.037 0.00 0.00 0.00 2.74
7033 15926 3.313526 GCAACATCTGCCATACGAAGAAT 59.686 43.478 0.00 0.00 46.13 2.40
7071 15968 9.416794 CAACTGATGGTGTATAGAAGATATGAC 57.583 37.037 0.00 0.00 0.00 3.06
7135 16035 5.750352 AAATCATCAGCAAAATCCAACCT 57.250 34.783 0.00 0.00 0.00 3.50
7163 16063 6.931840 GCGTAGATCAGGGAGAAAGAAAATAT 59.068 38.462 0.00 0.00 0.00 1.28
7177 16077 1.920574 CAGAACGTTGCGTAGATCAGG 59.079 52.381 5.00 0.00 39.99 3.86
7179 16079 1.990799 CCAGAACGTTGCGTAGATCA 58.009 50.000 5.00 0.00 39.99 2.92
7183 16083 1.705256 TTAGCCAGAACGTTGCGTAG 58.295 50.000 5.00 0.00 39.99 3.51
7186 16086 2.599848 GCATATTAGCCAGAACGTTGCG 60.600 50.000 5.00 0.00 0.00 4.85
7190 16090 3.133003 ACTCAGCATATTAGCCAGAACGT 59.867 43.478 0.00 0.00 34.23 3.99
7195 16095 7.154656 TGTATGTTACTCAGCATATTAGCCAG 58.845 38.462 0.00 0.00 31.51 4.85
7260 16161 6.763135 GCCCATTCTATCAAAGCGATGATATA 59.237 38.462 12.85 5.68 40.51 0.86
7261 16162 5.587844 GCCCATTCTATCAAAGCGATGATAT 59.412 40.000 12.85 0.58 40.51 1.63
7262 16163 4.937620 GCCCATTCTATCAAAGCGATGATA 59.062 41.667 12.14 12.14 40.44 2.15
7263 16164 3.755378 GCCCATTCTATCAAAGCGATGAT 59.245 43.478 11.27 11.27 42.52 2.45
7265 16166 2.096069 CGCCCATTCTATCAAAGCGATG 60.096 50.000 0.00 0.00 44.51 3.84
7266 16167 2.146342 CGCCCATTCTATCAAAGCGAT 58.854 47.619 0.00 0.00 44.51 4.58
7267 16168 1.581934 CGCCCATTCTATCAAAGCGA 58.418 50.000 0.00 0.00 44.51 4.93
7269 16170 0.954452 CCCGCCCATTCTATCAAAGC 59.046 55.000 0.00 0.00 0.00 3.51
7286 16187 4.322385 GCGTGTGTTTCCGCACCC 62.322 66.667 0.00 0.00 46.97 4.61
7292 16193 0.034337 TGGGTCTAGCGTGTGTTTCC 59.966 55.000 0.00 0.00 0.00 3.13
7322 16229 8.134261 GCCCAGAGTATAGTTAACTACAAGTAC 58.866 40.741 17.45 14.80 0.00 2.73
7323 16230 7.012704 CGCCCAGAGTATAGTTAACTACAAGTA 59.987 40.741 17.45 3.73 0.00 2.24
7331 16238 4.507021 GCTTTCGCCCAGAGTATAGTTAAC 59.493 45.833 0.00 0.00 0.00 2.01
7349 16256 0.248702 CGAGGTCGAGCTAGGCTTTC 60.249 60.000 18.63 2.25 39.88 2.62
7355 16262 1.025812 ATCCAACGAGGTCGAGCTAG 58.974 55.000 18.63 20.00 43.02 3.42
7367 16274 0.583438 GTCATCATCGGCATCCAACG 59.417 55.000 0.00 0.00 0.00 4.10
7371 16278 1.278172 CGTCGTCATCATCGGCATCC 61.278 60.000 0.00 0.00 32.96 3.51
7390 16297 4.502777 GGAAACAATATCCTAGGACGGGAC 60.503 50.000 15.42 1.32 35.51 4.46
7424 16331 3.790437 AGGGGCTCCATGACGCTG 61.790 66.667 4.79 0.00 46.01 5.18
7456 16363 3.607741 AGTCGATCACGGTCTTAGAGAA 58.392 45.455 0.00 0.00 40.21 2.87
7457 16364 3.263489 AGTCGATCACGGTCTTAGAGA 57.737 47.619 0.00 0.00 40.21 3.10
7458 16365 4.099120 CAAAGTCGATCACGGTCTTAGAG 58.901 47.826 0.00 0.00 40.21 2.43
7459 16366 3.504906 ACAAAGTCGATCACGGTCTTAGA 59.495 43.478 0.00 0.00 40.21 2.10
7460 16367 3.608506 CACAAAGTCGATCACGGTCTTAG 59.391 47.826 0.00 0.00 40.21 2.18
7461 16368 3.571571 CACAAAGTCGATCACGGTCTTA 58.428 45.455 0.00 0.00 40.21 2.10
7462 16369 2.404215 CACAAAGTCGATCACGGTCTT 58.596 47.619 0.00 0.00 40.21 3.01
7463 16370 1.336887 CCACAAAGTCGATCACGGTCT 60.337 52.381 0.00 0.00 40.21 3.85
7464 16371 1.068474 CCACAAAGTCGATCACGGTC 58.932 55.000 0.00 0.00 40.21 4.79
7465 16372 0.949105 GCCACAAAGTCGATCACGGT 60.949 55.000 0.00 0.00 40.21 4.83
7466 16373 0.670546 AGCCACAAAGTCGATCACGG 60.671 55.000 0.00 0.00 40.21 4.94
7467 16374 0.439985 CAGCCACAAAGTCGATCACG 59.560 55.000 0.00 0.00 41.26 4.35
7468 16375 0.798776 CCAGCCACAAAGTCGATCAC 59.201 55.000 0.00 0.00 0.00 3.06
7469 16376 0.955428 GCCAGCCACAAAGTCGATCA 60.955 55.000 0.00 0.00 0.00 2.92
7470 16377 0.674895 AGCCAGCCACAAAGTCGATC 60.675 55.000 0.00 0.00 0.00 3.69
7471 16378 0.674895 GAGCCAGCCACAAAGTCGAT 60.675 55.000 0.00 0.00 0.00 3.59
7472 16379 1.301716 GAGCCAGCCACAAAGTCGA 60.302 57.895 0.00 0.00 0.00 4.20
7473 16380 2.328099 GGAGCCAGCCACAAAGTCG 61.328 63.158 0.00 0.00 0.00 4.18
7474 16381 1.973812 GGGAGCCAGCCACAAAGTC 60.974 63.158 0.00 0.00 0.00 3.01
7475 16382 2.011617 AAGGGAGCCAGCCACAAAGT 62.012 55.000 0.00 0.00 0.00 2.66
7476 16383 0.829182 AAAGGGAGCCAGCCACAAAG 60.829 55.000 0.00 0.00 0.00 2.77
7477 16384 0.398381 AAAAGGGAGCCAGCCACAAA 60.398 50.000 0.00 0.00 0.00 2.83
7478 16385 0.398381 AAAAAGGGAGCCAGCCACAA 60.398 50.000 0.00 0.00 0.00 3.33
7479 16386 0.827507 GAAAAAGGGAGCCAGCCACA 60.828 55.000 0.00 0.00 0.00 4.17
7480 16387 0.540597 AGAAAAAGGGAGCCAGCCAC 60.541 55.000 0.00 0.00 0.00 5.01
7481 16388 0.188342 AAGAAAAAGGGAGCCAGCCA 59.812 50.000 0.00 0.00 0.00 4.75
7482 16389 0.891373 GAAGAAAAAGGGAGCCAGCC 59.109 55.000 0.00 0.00 0.00 4.85
7483 16390 1.620822 TGAAGAAAAAGGGAGCCAGC 58.379 50.000 0.00 0.00 0.00 4.85
7484 16391 3.160269 ACATGAAGAAAAAGGGAGCCAG 58.840 45.455 0.00 0.00 0.00 4.85
7485 16392 3.243359 ACATGAAGAAAAAGGGAGCCA 57.757 42.857 0.00 0.00 0.00 4.75
7486 16393 4.281941 AGAAACATGAAGAAAAAGGGAGCC 59.718 41.667 0.00 0.00 0.00 4.70
7487 16394 5.225642 CAGAAACATGAAGAAAAAGGGAGC 58.774 41.667 0.00 0.00 0.00 4.70
7488 16395 5.010415 AGCAGAAACATGAAGAAAAAGGGAG 59.990 40.000 0.00 0.00 0.00 4.30
7489 16396 4.895297 AGCAGAAACATGAAGAAAAAGGGA 59.105 37.500 0.00 0.00 0.00 4.20
7490 16397 4.986659 CAGCAGAAACATGAAGAAAAAGGG 59.013 41.667 0.00 0.00 0.00 3.95
7491 16398 5.835257 TCAGCAGAAACATGAAGAAAAAGG 58.165 37.500 0.00 0.00 0.00 3.11
7492 16399 7.941795 AATCAGCAGAAACATGAAGAAAAAG 57.058 32.000 0.00 0.00 0.00 2.27
7493 16400 8.721019 AAAATCAGCAGAAACATGAAGAAAAA 57.279 26.923 0.00 0.00 0.00 1.94
7494 16401 8.199449 AGAAAATCAGCAGAAACATGAAGAAAA 58.801 29.630 0.00 0.00 0.00 2.29
7495 16402 7.719483 AGAAAATCAGCAGAAACATGAAGAAA 58.281 30.769 0.00 0.00 0.00 2.52
7496 16403 7.281040 AGAAAATCAGCAGAAACATGAAGAA 57.719 32.000 0.00 0.00 0.00 2.52
7497 16404 6.889301 AGAAAATCAGCAGAAACATGAAGA 57.111 33.333 0.00 0.00 0.00 2.87
7498 16405 7.114529 GTGAAGAAAATCAGCAGAAACATGAAG 59.885 37.037 0.00 0.00 0.00 3.02
7499 16406 6.919662 GTGAAGAAAATCAGCAGAAACATGAA 59.080 34.615 0.00 0.00 0.00 2.57
7500 16407 6.441274 GTGAAGAAAATCAGCAGAAACATGA 58.559 36.000 0.00 0.00 0.00 3.07
7501 16408 5.632347 GGTGAAGAAAATCAGCAGAAACATG 59.368 40.000 0.00 0.00 44.99 3.21
7502 16409 5.776744 GGTGAAGAAAATCAGCAGAAACAT 58.223 37.500 1.94 0.00 44.99 2.71
7503 16410 5.186996 GGTGAAGAAAATCAGCAGAAACA 57.813 39.130 1.94 0.00 44.99 2.83
7510 16417 3.365364 CGAGGTTGGTGAAGAAAATCAGC 60.365 47.826 0.00 0.00 45.65 4.26
7511 16418 3.365364 GCGAGGTTGGTGAAGAAAATCAG 60.365 47.826 0.00 0.00 0.00 2.90
7512 16419 2.552315 GCGAGGTTGGTGAAGAAAATCA 59.448 45.455 0.00 0.00 0.00 2.57
7513 16420 2.552315 TGCGAGGTTGGTGAAGAAAATC 59.448 45.455 0.00 0.00 0.00 2.17
7514 16421 2.554032 CTGCGAGGTTGGTGAAGAAAAT 59.446 45.455 0.00 0.00 0.00 1.82
7515 16422 1.946768 CTGCGAGGTTGGTGAAGAAAA 59.053 47.619 0.00 0.00 0.00 2.29
7516 16423 1.593196 CTGCGAGGTTGGTGAAGAAA 58.407 50.000 0.00 0.00 0.00 2.52
7517 16424 0.884704 GCTGCGAGGTTGGTGAAGAA 60.885 55.000 0.00 0.00 0.00 2.52
7518 16425 1.301716 GCTGCGAGGTTGGTGAAGA 60.302 57.895 0.00 0.00 0.00 2.87
7519 16426 1.597854 TGCTGCGAGGTTGGTGAAG 60.598 57.895 0.00 0.00 0.00 3.02
7520 16427 1.891919 GTGCTGCGAGGTTGGTGAA 60.892 57.895 0.00 0.00 0.00 3.18
7521 16428 2.280797 GTGCTGCGAGGTTGGTGA 60.281 61.111 0.00 0.00 0.00 4.02
7522 16429 3.357079 GGTGCTGCGAGGTTGGTG 61.357 66.667 0.00 0.00 0.00 4.17
7523 16430 4.643387 GGGTGCTGCGAGGTTGGT 62.643 66.667 0.00 0.00 0.00 3.67
7534 16441 4.740822 GAATGGGTGGCGGGTGCT 62.741 66.667 0.00 0.00 42.25 4.40
7536 16443 4.402528 TCGAATGGGTGGCGGGTG 62.403 66.667 0.00 0.00 0.00 4.61
7537 16444 4.404098 GTCGAATGGGTGGCGGGT 62.404 66.667 0.00 0.00 0.00 5.28
7539 16446 3.943479 TTCGTCGAATGGGTGGCGG 62.943 63.158 2.90 0.00 0.00 6.13
7540 16447 1.366111 ATTTCGTCGAATGGGTGGCG 61.366 55.000 8.78 0.00 0.00 5.69
7541 16448 0.098728 CATTTCGTCGAATGGGTGGC 59.901 55.000 8.78 0.00 34.20 5.01
7547 16454 4.436050 CCTTCTTGTCCATTTCGTCGAATG 60.436 45.833 8.78 9.05 36.89 2.67
7548 16455 3.684788 CCTTCTTGTCCATTTCGTCGAAT 59.315 43.478 8.78 0.00 0.00 3.34
7549 16456 3.064207 CCTTCTTGTCCATTTCGTCGAA 58.936 45.455 2.90 2.90 0.00 3.71
7550 16457 2.683968 CCTTCTTGTCCATTTCGTCGA 58.316 47.619 0.00 0.00 0.00 4.20
7551 16458 1.128692 GCCTTCTTGTCCATTTCGTCG 59.871 52.381 0.00 0.00 0.00 5.12
7552 16459 2.160417 CAGCCTTCTTGTCCATTTCGTC 59.840 50.000 0.00 0.00 0.00 4.20
7553 16460 2.154462 CAGCCTTCTTGTCCATTTCGT 58.846 47.619 0.00 0.00 0.00 3.85
7554 16461 1.135575 GCAGCCTTCTTGTCCATTTCG 60.136 52.381 0.00 0.00 0.00 3.46
7555 16462 2.094854 CAGCAGCCTTCTTGTCCATTTC 60.095 50.000 0.00 0.00 0.00 2.17
7556 16463 1.891150 CAGCAGCCTTCTTGTCCATTT 59.109 47.619 0.00 0.00 0.00 2.32
7557 16464 1.542492 CAGCAGCCTTCTTGTCCATT 58.458 50.000 0.00 0.00 0.00 3.16
7558 16465 0.323178 CCAGCAGCCTTCTTGTCCAT 60.323 55.000 0.00 0.00 0.00 3.41
7559 16466 1.073722 CCAGCAGCCTTCTTGTCCA 59.926 57.895 0.00 0.00 0.00 4.02
7560 16467 2.338785 GCCAGCAGCCTTCTTGTCC 61.339 63.158 0.00 0.00 34.35 4.02
7561 16468 1.601759 TGCCAGCAGCCTTCTTGTC 60.602 57.895 0.00 0.00 42.71 3.18
7562 16469 1.900498 GTGCCAGCAGCCTTCTTGT 60.900 57.895 0.00 0.00 42.71 3.16
7563 16470 1.602888 AGTGCCAGCAGCCTTCTTG 60.603 57.895 0.00 0.00 42.71 3.02
7564 16471 1.602888 CAGTGCCAGCAGCCTTCTT 60.603 57.895 0.00 0.00 42.71 2.52
7565 16472 2.033757 CAGTGCCAGCAGCCTTCT 59.966 61.111 0.00 0.00 42.71 2.85
7566 16473 3.060615 CCAGTGCCAGCAGCCTTC 61.061 66.667 0.00 0.00 42.71 3.46
7573 16480 4.479993 ATCCTCGCCAGTGCCAGC 62.480 66.667 0.00 0.00 0.00 4.85
7574 16481 2.202987 GATCCTCGCCAGTGCCAG 60.203 66.667 0.00 0.00 0.00 4.85
7575 16482 3.785859 GGATCCTCGCCAGTGCCA 61.786 66.667 3.84 0.00 0.00 4.92
7576 16483 4.554036 GGGATCCTCGCCAGTGCC 62.554 72.222 12.58 0.00 0.00 5.01
7577 16484 2.543067 AAAGGGATCCTCGCCAGTGC 62.543 60.000 12.58 0.00 30.89 4.40
7578 16485 0.035056 AAAAGGGATCCTCGCCAGTG 60.035 55.000 12.58 0.00 30.89 3.66
7579 16486 0.035056 CAAAAGGGATCCTCGCCAGT 60.035 55.000 12.58 0.00 30.89 4.00
7580 16487 1.379642 GCAAAAGGGATCCTCGCCAG 61.380 60.000 12.58 0.00 30.89 4.85
7581 16488 1.378514 GCAAAAGGGATCCTCGCCA 60.379 57.895 12.58 0.00 30.89 5.69
7582 16489 2.121538 GGCAAAAGGGATCCTCGCC 61.122 63.158 12.58 12.49 30.89 5.54
7583 16490 1.077429 AGGCAAAAGGGATCCTCGC 60.077 57.895 12.58 7.23 30.89 5.03
7584 16491 0.464554 GGAGGCAAAAGGGATCCTCG 60.465 60.000 12.58 0.00 44.55 4.63
7585 16492 0.922626 AGGAGGCAAAAGGGATCCTC 59.077 55.000 12.58 1.55 43.27 3.71
7586 16493 0.922626 GAGGAGGCAAAAGGGATCCT 59.077 55.000 12.58 0.00 43.08 3.24
7587 16494 0.106469 GGAGGAGGCAAAAGGGATCC 60.106 60.000 1.92 1.92 0.00 3.36
7588 16495 0.106469 GGGAGGAGGCAAAAGGGATC 60.106 60.000 0.00 0.00 0.00 3.36
7589 16496 1.584717 GGGGAGGAGGCAAAAGGGAT 61.585 60.000 0.00 0.00 0.00 3.85
7590 16497 2.238701 GGGGAGGAGGCAAAAGGGA 61.239 63.158 0.00 0.00 0.00 4.20
7591 16498 2.360585 GGGGAGGAGGCAAAAGGG 59.639 66.667 0.00 0.00 0.00 3.95
7592 16499 2.044946 CGGGGAGGAGGCAAAAGG 60.045 66.667 0.00 0.00 0.00 3.11
7593 16500 1.377333 GTCGGGGAGGAGGCAAAAG 60.377 63.158 0.00 0.00 0.00 2.27
7594 16501 2.754375 GTCGGGGAGGAGGCAAAA 59.246 61.111 0.00 0.00 0.00 2.44
7595 16502 3.702048 CGTCGGGGAGGAGGCAAA 61.702 66.667 0.00 0.00 0.00 3.68
7596 16503 4.689549 TCGTCGGGGAGGAGGCAA 62.690 66.667 0.00 0.00 0.00 4.52
7600 16507 3.812019 CACGTCGTCGGGGAGGAG 61.812 72.222 7.05 0.00 41.85 3.69
7603 16510 4.477975 GAGCACGTCGTCGGGGAG 62.478 72.222 6.42 0.00 41.24 4.30
7612 16519 3.768632 GATGTGGTCGAGCACGTC 58.231 61.111 38.96 38.96 40.69 4.34
7621 16528 2.069273 CAGAAAGGACACGATGTGGTC 58.931 52.381 1.64 0.00 37.94 4.02
7622 16529 1.878102 GCAGAAAGGACACGATGTGGT 60.878 52.381 1.64 0.00 37.94 4.16
7623 16530 0.798776 GCAGAAAGGACACGATGTGG 59.201 55.000 1.64 0.00 37.94 4.17
7624 16531 0.798776 GGCAGAAAGGACACGATGTG 59.201 55.000 0.00 0.00 39.75 3.21
7625 16532 0.670546 CGGCAGAAAGGACACGATGT 60.671 55.000 0.00 0.00 0.00 3.06
7626 16533 1.361668 CCGGCAGAAAGGACACGATG 61.362 60.000 0.00 0.00 0.00 3.84
7627 16534 1.079127 CCGGCAGAAAGGACACGAT 60.079 57.895 0.00 0.00 0.00 3.73
7628 16535 2.342279 CCGGCAGAAAGGACACGA 59.658 61.111 0.00 0.00 0.00 4.35
7629 16536 2.742372 CCCGGCAGAAAGGACACG 60.742 66.667 0.00 0.00 0.00 4.49
7630 16537 2.359975 CCCCGGCAGAAAGGACAC 60.360 66.667 0.00 0.00 0.00 3.67
7631 16538 3.646715 CCCCCGGCAGAAAGGACA 61.647 66.667 0.00 0.00 0.00 4.02
7632 16539 2.680370 ATCCCCCGGCAGAAAGGAC 61.680 63.158 0.00 0.00 0.00 3.85
7633 16540 2.286121 ATCCCCCGGCAGAAAGGA 60.286 61.111 0.00 0.00 0.00 3.36
7634 16541 2.124151 CATCCCCCGGCAGAAAGG 60.124 66.667 0.00 0.00 0.00 3.11
7635 16542 0.749454 CTTCATCCCCCGGCAGAAAG 60.749 60.000 0.00 0.00 0.00 2.62
7636 16543 1.302949 CTTCATCCCCCGGCAGAAA 59.697 57.895 0.00 0.00 0.00 2.52
7637 16544 2.998097 CTTCATCCCCCGGCAGAA 59.002 61.111 0.00 0.00 0.00 3.02
7638 16545 3.797353 GCTTCATCCCCCGGCAGA 61.797 66.667 0.00 0.00 0.00 4.26
7639 16546 4.883354 GGCTTCATCCCCCGGCAG 62.883 72.222 0.00 0.00 0.00 4.85
7646 16553 1.452833 GTCTGCAGGGCTTCATCCC 60.453 63.158 15.13 0.00 46.93 3.85
7647 16554 0.106819 ATGTCTGCAGGGCTTCATCC 60.107 55.000 15.13 0.00 0.00 3.51
7648 16555 1.022735 CATGTCTGCAGGGCTTCATC 58.977 55.000 15.13 0.00 0.00 2.92
7649 16556 3.186345 CATGTCTGCAGGGCTTCAT 57.814 52.632 15.13 8.38 0.00 2.57
7650 16557 4.728409 CATGTCTGCAGGGCTTCA 57.272 55.556 15.13 6.42 0.00 3.02
7660 16567 0.671472 TTGTCGAGCAGGCATGTCTG 60.671 55.000 23.17 23.17 32.63 3.51
7661 16568 0.671781 GTTGTCGAGCAGGCATGTCT 60.672 55.000 0.00 0.00 32.63 3.41
7662 16569 1.639298 GGTTGTCGAGCAGGCATGTC 61.639 60.000 0.00 0.00 32.63 3.06
7663 16570 1.672356 GGTTGTCGAGCAGGCATGT 60.672 57.895 0.00 0.00 32.63 3.21
7664 16571 1.672030 TGGTTGTCGAGCAGGCATG 60.672 57.895 0.00 0.00 32.63 4.06
7665 16572 2.749682 TGGTTGTCGAGCAGGCAT 59.250 55.556 0.00 0.00 32.63 4.40
7670 16577 2.280797 GCCACTGGTTGTCGAGCA 60.281 61.111 0.00 0.00 0.00 4.26
7671 16578 3.414700 CGCCACTGGTTGTCGAGC 61.415 66.667 0.00 0.00 0.00 5.03
7672 16579 2.029073 ACGCCACTGGTTGTCGAG 59.971 61.111 0.00 0.00 0.00 4.04
7673 16580 2.279851 CACGCCACTGGTTGTCGA 60.280 61.111 0.00 0.00 0.00 4.20
7674 16581 2.279851 TCACGCCACTGGTTGTCG 60.280 61.111 0.00 0.00 0.00 4.35
7675 16582 2.251642 GGTCACGCCACTGGTTGTC 61.252 63.158 0.00 0.00 37.17 3.18
7676 16583 2.203153 GGTCACGCCACTGGTTGT 60.203 61.111 0.00 0.00 37.17 3.32
7677 16584 1.961277 GAGGTCACGCCACTGGTTG 60.961 63.158 0.00 0.00 40.61 3.77
7678 16585 0.830444 TAGAGGTCACGCCACTGGTT 60.830 55.000 0.00 0.00 38.64 3.67
7679 16586 1.228769 TAGAGGTCACGCCACTGGT 60.229 57.895 0.00 0.00 38.64 4.00
7680 16587 0.965866 TCTAGAGGTCACGCCACTGG 60.966 60.000 0.00 0.00 38.64 4.00
7681 16588 0.453793 CTCTAGAGGTCACGCCACTG 59.546 60.000 12.27 0.00 38.64 3.66
7682 16589 0.681564 CCTCTAGAGGTCACGCCACT 60.682 60.000 28.12 0.00 43.61 4.00
7683 16590 1.810532 CCTCTAGAGGTCACGCCAC 59.189 63.158 28.12 0.00 43.61 5.01
7684 16591 4.338815 CCTCTAGAGGTCACGCCA 57.661 61.111 28.12 0.00 43.61 5.69
7693 16600 1.363744 CTGGTTTTGCGCCTCTAGAG 58.636 55.000 13.18 13.18 0.00 2.43
7694 16601 0.673644 GCTGGTTTTGCGCCTCTAGA 60.674 55.000 4.18 0.00 0.00 2.43
7695 16602 1.648467 GGCTGGTTTTGCGCCTCTAG 61.648 60.000 4.18 1.02 40.62 2.43
7696 16603 1.674322 GGCTGGTTTTGCGCCTCTA 60.674 57.895 4.18 0.00 40.62 2.43
7697 16604 2.985847 GGCTGGTTTTGCGCCTCT 60.986 61.111 4.18 0.00 40.62 3.69
7698 16605 2.548127 GATGGCTGGTTTTGCGCCTC 62.548 60.000 4.18 0.00 44.09 4.70
7699 16606 2.601367 ATGGCTGGTTTTGCGCCT 60.601 55.556 4.18 0.00 44.09 5.52
7700 16607 2.125952 GATGGCTGGTTTTGCGCC 60.126 61.111 4.18 0.00 44.02 6.53
7701 16608 2.504681 CGATGGCTGGTTTTGCGC 60.505 61.111 0.00 0.00 0.00 6.09
7702 16609 2.504681 GCGATGGCTGGTTTTGCG 60.505 61.111 0.00 0.00 35.83 4.85
7712 16619 1.267732 CGTCAAAGATGAAGCGATGGC 60.268 52.381 0.00 0.00 37.30 4.40
7713 16620 2.270923 TCGTCAAAGATGAAGCGATGG 58.729 47.619 0.00 0.00 37.30 3.51
7714 16621 3.997319 TTCGTCAAAGATGAAGCGATG 57.003 42.857 0.00 0.00 37.30 3.84
7715 16622 3.310774 CCATTCGTCAAAGATGAAGCGAT 59.689 43.478 7.61 0.00 40.28 4.58
7716 16623 2.672874 CCATTCGTCAAAGATGAAGCGA 59.327 45.455 7.61 0.00 40.28 4.93
7717 16624 2.416547 ACCATTCGTCAAAGATGAAGCG 59.583 45.455 7.61 3.23 40.28 4.68
7718 16625 4.008539 GACCATTCGTCAAAGATGAAGC 57.991 45.455 7.61 0.00 40.28 3.86
7729 16636 3.606153 CGGTTGAAACTTGACCATTCGTC 60.606 47.826 0.00 0.00 42.33 4.20
7730 16637 2.289547 CGGTTGAAACTTGACCATTCGT 59.710 45.455 0.00 0.00 32.95 3.85
7731 16638 2.916111 CGGTTGAAACTTGACCATTCG 58.084 47.619 0.00 0.00 32.95 3.34
7732 16639 2.034053 TGCGGTTGAAACTTGACCATTC 59.966 45.455 0.00 0.00 32.95 2.67
7733 16640 2.028130 TGCGGTTGAAACTTGACCATT 58.972 42.857 0.00 0.00 32.95 3.16
7734 16641 1.686355 TGCGGTTGAAACTTGACCAT 58.314 45.000 0.00 0.00 32.95 3.55
7735 16642 1.403679 CTTGCGGTTGAAACTTGACCA 59.596 47.619 0.00 0.00 32.95 4.02
7736 16643 1.864029 GCTTGCGGTTGAAACTTGACC 60.864 52.381 0.00 0.00 0.00 4.02
7737 16644 1.477105 GCTTGCGGTTGAAACTTGAC 58.523 50.000 0.00 0.00 0.00 3.18
7738 16645 0.028770 CGCTTGCGGTTGAAACTTGA 59.971 50.000 7.16 0.00 0.00 3.02
7739 16646 0.248458 ACGCTTGCGGTTGAAACTTG 60.248 50.000 19.19 0.00 0.00 3.16
7740 16647 0.454196 AACGCTTGCGGTTGAAACTT 59.546 45.000 19.19 0.00 0.00 2.66
7741 16648 0.454196 AAACGCTTGCGGTTGAAACT 59.546 45.000 17.66 0.00 0.00 2.66
7742 16649 0.843872 GAAACGCTTGCGGTTGAAAC 59.156 50.000 23.05 4.78 0.00 2.78
7743 16650 0.452184 TGAAACGCTTGCGGTTGAAA 59.548 45.000 23.05 5.73 0.00 2.69
7744 16651 0.028770 CTGAAACGCTTGCGGTTGAA 59.971 50.000 23.05 9.92 0.00 2.69
7745 16652 1.092921 ACTGAAACGCTTGCGGTTGA 61.093 50.000 23.05 13.87 0.00 3.18
7746 16653 0.657368 GACTGAAACGCTTGCGGTTG 60.657 55.000 23.05 11.82 0.00 3.77
7747 16654 1.092921 TGACTGAAACGCTTGCGGTT 61.093 50.000 18.38 18.38 0.00 4.44
7748 16655 1.498865 CTGACTGAAACGCTTGCGGT 61.499 55.000 19.19 10.16 0.00 5.68
7749 16656 1.205064 CTGACTGAAACGCTTGCGG 59.795 57.895 19.19 3.50 0.00 5.69
7750 16657 1.439365 GCTGACTGAAACGCTTGCG 60.439 57.895 13.70 13.70 0.00 4.85
7751 16658 0.110464 GAGCTGACTGAAACGCTTGC 60.110 55.000 0.00 0.00 31.96 4.01
7752 16659 0.162507 CGAGCTGACTGAAACGCTTG 59.837 55.000 0.00 0.00 31.96 4.01
7753 16660 0.249489 ACGAGCTGACTGAAACGCTT 60.249 50.000 0.00 0.00 31.96 4.68
7754 16661 0.941463 CACGAGCTGACTGAAACGCT 60.941 55.000 0.00 0.00 35.03 5.07
7755 16662 0.939577 TCACGAGCTGACTGAAACGC 60.940 55.000 0.00 0.00 0.00 4.84
7756 16663 1.453524 CTTCACGAGCTGACTGAAACG 59.546 52.381 0.00 0.00 0.00 3.60
7768 16675 2.286294 GGTGCATTATCAGCTTCACGAG 59.714 50.000 0.00 0.00 0.00 4.18
7769 16676 2.093500 AGGTGCATTATCAGCTTCACGA 60.093 45.455 0.00 0.00 41.51 4.35
7770 16677 2.283298 AGGTGCATTATCAGCTTCACG 58.717 47.619 0.00 0.00 41.51 4.35
7771 16678 3.273434 TGAGGTGCATTATCAGCTTCAC 58.727 45.455 0.00 0.00 43.94 3.18
7772 16679 3.538591 CTGAGGTGCATTATCAGCTTCA 58.461 45.455 11.36 0.00 43.94 3.02
7773 16680 2.877168 CCTGAGGTGCATTATCAGCTTC 59.123 50.000 16.24 0.00 43.94 3.86
7774 16681 2.422519 CCCTGAGGTGCATTATCAGCTT 60.423 50.000 16.24 0.00 43.94 3.74
7775 16682 1.142465 CCCTGAGGTGCATTATCAGCT 59.858 52.381 16.24 0.00 46.25 4.24
7776 16683 1.141657 TCCCTGAGGTGCATTATCAGC 59.858 52.381 16.24 0.00 39.30 4.26
7777 16684 3.565764 TTCCCTGAGGTGCATTATCAG 57.434 47.619 15.21 15.21 40.13 2.90
7778 16685 3.435457 CCATTCCCTGAGGTGCATTATCA 60.435 47.826 0.00 0.00 0.00 2.15
7779 16686 3.152341 CCATTCCCTGAGGTGCATTATC 58.848 50.000 0.00 0.00 0.00 1.75
7780 16687 2.515429 ACCATTCCCTGAGGTGCATTAT 59.485 45.455 0.00 0.00 33.57 1.28
7781 16688 1.922447 ACCATTCCCTGAGGTGCATTA 59.078 47.619 0.00 0.00 33.57 1.90
7782 16689 0.706433 ACCATTCCCTGAGGTGCATT 59.294 50.000 0.00 0.00 33.57 3.56
7783 16690 1.492176 CTACCATTCCCTGAGGTGCAT 59.508 52.381 0.00 0.00 36.87 3.96
7784 16691 0.911769 CTACCATTCCCTGAGGTGCA 59.088 55.000 0.00 0.00 36.87 4.57
7785 16692 1.204146 TCTACCATTCCCTGAGGTGC 58.796 55.000 0.00 0.00 36.87 5.01
7786 16693 3.455910 TCAATCTACCATTCCCTGAGGTG 59.544 47.826 0.00 0.00 36.87 4.00
7787 16694 3.456277 GTCAATCTACCATTCCCTGAGGT 59.544 47.826 0.00 0.00 39.41 3.85
7788 16695 3.493350 CGTCAATCTACCATTCCCTGAGG 60.493 52.174 0.00 0.00 0.00 3.86
7789 16696 3.493350 CCGTCAATCTACCATTCCCTGAG 60.493 52.174 0.00 0.00 0.00 3.35
7790 16697 2.434336 CCGTCAATCTACCATTCCCTGA 59.566 50.000 0.00 0.00 0.00 3.86
7791 16698 2.838736 CCGTCAATCTACCATTCCCTG 58.161 52.381 0.00 0.00 0.00 4.45
7792 16699 1.141053 GCCGTCAATCTACCATTCCCT 59.859 52.381 0.00 0.00 0.00 4.20
7793 16700 1.134220 TGCCGTCAATCTACCATTCCC 60.134 52.381 0.00 0.00 0.00 3.97
7794 16701 2.325583 TGCCGTCAATCTACCATTCC 57.674 50.000 0.00 0.00 0.00 3.01
7795 16702 2.549754 CCATGCCGTCAATCTACCATTC 59.450 50.000 0.00 0.00 0.00 2.67
7796 16703 2.575532 CCATGCCGTCAATCTACCATT 58.424 47.619 0.00 0.00 0.00 3.16
7797 16704 1.815408 GCCATGCCGTCAATCTACCAT 60.815 52.381 0.00 0.00 0.00 3.55
7798 16705 0.463654 GCCATGCCGTCAATCTACCA 60.464 55.000 0.00 0.00 0.00 3.25
7799 16706 1.166531 GGCCATGCCGTCAATCTACC 61.167 60.000 0.00 0.00 39.62 3.18
7800 16707 2.321213 GGCCATGCCGTCAATCTAC 58.679 57.895 0.00 0.00 39.62 2.59
7801 16708 4.876701 GGCCATGCCGTCAATCTA 57.123 55.556 0.00 0.00 39.62 1.98
7811 16718 2.747396 TTTCAATCTTGTGGCCATGC 57.253 45.000 9.72 0.00 0.00 4.06
7812 16719 3.527533 CCATTTCAATCTTGTGGCCATG 58.472 45.455 9.72 0.96 0.00 3.66
7813 16720 3.899052 CCATTTCAATCTTGTGGCCAT 57.101 42.857 9.72 0.00 0.00 4.40
7817 16724 2.933906 GCATGCCATTTCAATCTTGTGG 59.066 45.455 6.36 0.00 0.00 4.17
7818 16725 3.857052 AGCATGCCATTTCAATCTTGTG 58.143 40.909 15.66 0.00 0.00 3.33
7819 16726 3.767673 AGAGCATGCCATTTCAATCTTGT 59.232 39.130 15.66 0.00 0.00 3.16
7820 16727 4.112634 CAGAGCATGCCATTTCAATCTTG 58.887 43.478 15.66 0.00 0.00 3.02
7821 16728 4.021229 TCAGAGCATGCCATTTCAATCTT 58.979 39.130 15.66 0.00 0.00 2.40
7822 16729 3.628008 TCAGAGCATGCCATTTCAATCT 58.372 40.909 15.66 4.93 0.00 2.40
7823 16730 4.380841 TTCAGAGCATGCCATTTCAATC 57.619 40.909 15.66 2.28 0.00 2.67
7824 16731 5.353394 AATTCAGAGCATGCCATTTCAAT 57.647 34.783 15.66 2.78 0.00 2.57
7825 16732 4.811969 AATTCAGAGCATGCCATTTCAA 57.188 36.364 15.66 0.20 0.00 2.69
7826 16733 7.585579 TTATAATTCAGAGCATGCCATTTCA 57.414 32.000 15.66 0.00 0.00 2.69
7827 16734 8.876275 TTTTATAATTCAGAGCATGCCATTTC 57.124 30.769 15.66 5.18 0.00 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.