Multiple sequence alignment - TraesCS6D01G353400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G353400 chr6D 100.000 7008 0 0 1 7008 449222351 449215344 0.000000e+00 12942.0
1 TraesCS6D01G353400 chr6D 85.833 1560 151 34 2628 4171 449249528 449251033 0.000000e+00 1592.0
2 TraesCS6D01G353400 chr6D 91.806 659 54 0 4613 5271 449187442 449186784 0.000000e+00 918.0
3 TraesCS6D01G353400 chr6D 91.351 659 57 0 4613 5271 449251435 449252093 0.000000e+00 902.0
4 TraesCS6D01G353400 chr6D 81.376 945 96 31 256 1133 449190263 449189332 0.000000e+00 697.0
5 TraesCS6D01G353400 chr6D 94.175 412 23 1 4202 4612 119163270 119162859 1.660000e-175 627.0
6 TraesCS6D01G353400 chr6D 81.612 794 87 34 2854 3620 449188833 449188072 2.800000e-168 603.0
7 TraesCS6D01G353400 chr6D 95.442 373 15 1 4203 4575 20491460 20491830 1.680000e-165 593.0
8 TraesCS6D01G353400 chr6D 90.458 262 20 4 5765 6025 449253127 449253384 2.420000e-89 340.0
9 TraesCS6D01G353400 chr6D 89.700 233 21 3 5505 5734 449186269 449186037 1.910000e-75 294.0
10 TraesCS6D01G353400 chr6D 89.407 236 9 8 872 1103 449247367 449247590 4.140000e-72 283.0
11 TraesCS6D01G353400 chr6D 88.462 234 22 5 5505 5734 449252784 449253016 1.930000e-70 278.0
12 TraesCS6D01G353400 chr6D 77.662 479 67 27 2287 2759 449189057 449188613 9.020000e-64 255.0
13 TraesCS6D01G353400 chr6D 86.207 87 10 2 3957 4042 132312403 132312318 7.480000e-15 93.5
14 TraesCS6D01G353400 chr6D 94.737 38 2 0 5335 5372 84091542 84091579 7.590000e-05 60.2
15 TraesCS6D01G353400 chr6A 94.071 1383 65 11 4613 5994 595048828 595047462 0.000000e+00 2084.0
16 TraesCS6D01G353400 chr6A 92.746 1158 63 11 3058 4212 595049973 595048834 0.000000e+00 1653.0
17 TraesCS6D01G353400 chr6A 87.399 1119 111 20 3092 4192 595071505 595072611 0.000000e+00 1258.0
18 TraesCS6D01G353400 chr6A 93.622 784 26 13 516 1286 595052581 595051809 0.000000e+00 1149.0
19 TraesCS6D01G353400 chr6A 91.958 659 53 0 4613 5271 595025208 595024550 0.000000e+00 924.0
20 TraesCS6D01G353400 chr6A 91.781 657 54 0 4615 5271 595073318 595073974 0.000000e+00 915.0
21 TraesCS6D01G353400 chr6A 83.906 1019 98 22 1666 2660 595051067 595050091 0.000000e+00 913.0
22 TraesCS6D01G353400 chr6A 88.090 487 46 10 5516 5994 595024379 595023897 1.020000e-157 568.0
23 TraesCS6D01G353400 chr6A 82.336 685 79 25 2958 3620 595026488 595025824 2.210000e-154 556.0
24 TraesCS6D01G353400 chr6A 85.478 544 43 14 1 508 595053466 595052923 1.030000e-147 534.0
25 TraesCS6D01G353400 chr6A 78.415 732 85 39 559 1234 595030022 595029308 6.540000e-110 409.0
26 TraesCS6D01G353400 chr6A 83.820 445 47 9 2662 3097 595070999 595071427 3.940000e-107 399.0
27 TraesCS6D01G353400 chr6A 89.565 230 18 4 5505 5733 595076204 595076428 3.200000e-73 287.0
28 TraesCS6D01G353400 chr6A 85.393 267 17 12 872 1133 595070346 595070595 2.510000e-64 257.0
29 TraesCS6D01G353400 chr6A 86.207 87 10 2 3957 4042 171459529 171459444 7.480000e-15 93.5
30 TraesCS6D01G353400 chr6A 85.714 70 8 2 6071 6139 52697887 52697955 9.750000e-09 73.1
31 TraesCS6D01G353400 chr6B 84.760 1811 192 43 2412 4192 680809796 680811552 0.000000e+00 1738.0
32 TraesCS6D01G353400 chr6B 92.109 659 52 0 4613 5271 680860971 680861629 0.000000e+00 929.0
33 TraesCS6D01G353400 chr6B 91.502 659 56 0 4613 5271 680812005 680812663 0.000000e+00 907.0
34 TraesCS6D01G353400 chr6B 91.351 659 57 0 4613 5271 680778903 680778245 0.000000e+00 902.0
35 TraesCS6D01G353400 chr6B 87.002 577 57 11 3622 4193 680779494 680778931 9.920000e-178 634.0
36 TraesCS6D01G353400 chr6B 83.706 626 36 33 565 1133 680782276 680781660 1.340000e-146 531.0
37 TraesCS6D01G353400 chr6B 79.000 800 94 39 2854 3620 680859098 680859856 4.920000e-131 479.0
38 TraesCS6D01G353400 chr6B 84.130 523 44 23 620 1109 680858019 680858535 2.960000e-128 470.0
39 TraesCS6D01G353400 chr6B 77.992 777 79 42 2857 3598 680781041 680780322 3.040000e-108 403.0
40 TraesCS6D01G353400 chr6B 85.075 402 50 9 3623 4021 680859899 680860293 1.090000e-107 401.0
41 TraesCS6D01G353400 chr6B 91.949 236 17 1 5505 5740 680862164 680862397 5.240000e-86 329.0
42 TraesCS6D01G353400 chr6B 90.688 247 17 2 5779 6025 680777754 680777514 2.440000e-84 324.0
43 TraesCS6D01G353400 chr6B 92.000 225 16 1 5516 5740 680778087 680777865 1.470000e-81 315.0
44 TraesCS6D01G353400 chr6B 74.149 793 150 40 1293 2042 79296796 79296016 1.930000e-70 278.0
45 TraesCS6D01G353400 chr6B 89.815 216 15 5 5505 5713 680813357 680813572 3.220000e-68 270.0
46 TraesCS6D01G353400 chr6B 86.853 251 15 10 872 1121 680809063 680809296 1.500000e-66 265.0
47 TraesCS6D01G353400 chr6B 88.119 202 14 7 4016 4212 680860772 680860968 1.520000e-56 231.0
48 TraesCS6D01G353400 chr3D 98.271 983 16 1 6026 7008 35192339 35191358 0.000000e+00 1720.0
49 TraesCS6D01G353400 chr3D 77.367 433 72 16 1319 1729 441190898 441191326 4.230000e-57 233.0
50 TraesCS6D01G353400 chr3D 80.508 118 22 1 6023 6139 50037111 50036994 9.680000e-14 89.8
51 TraesCS6D01G353400 chr3D 79.032 124 15 10 6893 7008 508074198 508074318 2.710000e-09 75.0
52 TraesCS6D01G353400 chr7D 98.069 984 18 1 6026 7008 105653947 105652964 0.000000e+00 1711.0
53 TraesCS6D01G353400 chr7D 84.676 509 48 19 5509 5994 419768176 419768677 1.370000e-131 481.0
54 TraesCS6D01G353400 chr7D 95.000 220 10 1 5776 5994 487740126 487740345 1.870000e-90 344.0
55 TraesCS6D01G353400 chr7D 88.983 118 4 1 995 1103 487738043 487738160 3.410000e-28 137.0
56 TraesCS6D01G353400 chr7D 96.970 33 1 0 5338 5370 429707887 429707855 1.000000e-03 56.5
57 TraesCS6D01G353400 chr2D 98.069 984 16 3 6026 7008 183814090 183815071 0.000000e+00 1709.0
58 TraesCS6D01G353400 chr2D 95.533 403 17 1 4210 4612 66823009 66822608 1.650000e-180 643.0
59 TraesCS6D01G353400 chr2D 95.511 401 17 1 4213 4612 22788927 22789327 2.130000e-179 640.0
60 TraesCS6D01G353400 chr2D 95.250 400 18 1 4213 4612 40784766 40785164 3.570000e-177 632.0
61 TraesCS6D01G353400 chr2D 94.750 400 21 0 4213 4612 61307960 61308359 2.150000e-174 623.0
62 TraesCS6D01G353400 chr2D 74.940 834 142 45 1315 2092 56079565 56080387 3.150000e-83 320.0
63 TraesCS6D01G353400 chr2D 74.916 299 55 18 1797 2085 622231675 622231387 1.230000e-22 119.0
64 TraesCS6D01G353400 chr2D 77.551 147 22 10 1950 2091 639095361 639095221 2.100000e-10 78.7
65 TraesCS6D01G353400 chr2D 79.808 104 18 2 6691 6794 114515600 114515500 9.750000e-09 73.1
66 TraesCS6D01G353400 chr2D 100.000 31 0 0 5338 5368 575367853 575367823 2.730000e-04 58.4
67 TraesCS6D01G353400 chr4D 97.766 985 20 2 6026 7008 66040934 66041918 0.000000e+00 1696.0
68 TraesCS6D01G353400 chr4D 92.982 57 4 0 6709 6765 35614716 35614772 4.500000e-12 84.2
69 TraesCS6D01G353400 chr4D 94.286 35 2 0 5338 5372 399538174 399538208 4.000000e-03 54.7
70 TraesCS6D01G353400 chr7B 90.895 659 60 0 4613 5271 516464235 516464893 0.000000e+00 885.0
71 TraesCS6D01G353400 chr7B 84.118 510 50 20 5509 5993 435790252 435790755 1.380000e-126 464.0
72 TraesCS6D01G353400 chr7B 94.118 221 13 0 5779 5999 516465281 516465501 3.130000e-88 337.0
73 TraesCS6D01G353400 chr7B 84.195 348 52 3 1666 2010 244220848 244220501 1.130000e-87 335.0
74 TraesCS6D01G353400 chr7B 82.530 332 38 8 1941 2257 244220505 244220179 2.490000e-69 274.0
75 TraesCS6D01G353400 chr7B 100.000 33 0 0 5338 5370 5054380 5054412 2.110000e-05 62.1
76 TraesCS6D01G353400 chr7A 81.192 973 140 27 1315 2258 539327995 539328953 0.000000e+00 743.0
77 TraesCS6D01G353400 chr7A 80.039 1037 117 43 1293 2280 287210875 287209880 0.000000e+00 686.0
78 TraesCS6D01G353400 chr7A 85.924 476 47 11 5535 5990 513414586 513414111 2.270000e-134 490.0
79 TraesCS6D01G353400 chr7A 75.177 846 164 22 1317 2121 40243245 40242405 2.400000e-94 357.0
80 TraesCS6D01G353400 chr7A 94.521 219 11 1 5776 5993 555651263 555651481 3.130000e-88 337.0
81 TraesCS6D01G353400 chr7A 80.523 344 52 10 3305 3642 513416257 513415923 4.200000e-62 250.0
82 TraesCS6D01G353400 chr7A 88.406 207 22 2 5513 5719 555650962 555651166 1.510000e-61 248.0
83 TraesCS6D01G353400 chr7A 78.284 373 72 4 3367 3738 513415827 513415463 1.520000e-56 231.0
84 TraesCS6D01G353400 chr7A 93.878 98 4 2 1020 1116 513417483 513417387 5.660000e-31 147.0
85 TraesCS6D01G353400 chr7A 98.000 50 1 0 2763 2812 85258576 85258527 3.480000e-13 87.9
86 TraesCS6D01G353400 chr1A 81.850 865 106 25 1428 2256 524683496 524684345 0.000000e+00 680.0
87 TraesCS6D01G353400 chr1A 93.017 401 27 1 4212 4612 281093802 281093403 1.010000e-162 584.0
88 TraesCS6D01G353400 chr1A 89.855 69 7 0 2753 2821 46217061 46216993 9.680000e-14 89.8
89 TraesCS6D01G353400 chr1A 89.855 69 7 0 2753 2821 46261035 46260967 9.680000e-14 89.8
90 TraesCS6D01G353400 chr3A 81.323 862 116 28 1431 2256 210578411 210577559 0.000000e+00 658.0
91 TraesCS6D01G353400 chr3A 92.494 413 19 5 4212 4612 638744623 638745035 1.310000e-161 580.0
92 TraesCS6D01G353400 chr3A 91.748 412 23 1 4212 4612 687416656 687416245 4.750000e-156 562.0
93 TraesCS6D01G353400 chr3A 81.994 361 52 10 1315 1667 581620895 581621250 1.910000e-75 294.0
94 TraesCS6D01G353400 chr3A 86.111 72 10 0 6068 6139 742275565 742275636 2.100000e-10 78.7
95 TraesCS6D01G353400 chr2A 95.103 388 18 1 4233 4620 62699182 62699568 1.670000e-170 610.0
96 TraesCS6D01G353400 chr2A 86.111 72 10 0 6068 6139 736909568 736909639 2.100000e-10 78.7
97 TraesCS6D01G353400 chr2B 95.526 380 17 0 4233 4612 579995984 579996363 6.010000e-170 608.0
98 TraesCS6D01G353400 chr2B 84.884 86 12 1 3966 4050 497806032 497805947 1.250000e-12 86.1
99 TraesCS6D01G353400 chr2B 100.000 29 0 0 5337 5365 189604821 189604849 4.000000e-03 54.7
100 TraesCS6D01G353400 chr5D 75.099 1008 175 49 1315 2257 549200250 549201246 1.090000e-107 401.0
101 TraesCS6D01G353400 chr5D 86.047 86 12 0 6709 6794 473512768 473512683 7.480000e-15 93.5
102 TraesCS6D01G353400 chr5D 85.393 89 9 3 6709 6795 436789992 436789906 9.680000e-14 89.8
103 TraesCS6D01G353400 chr1D 76.943 772 130 30 1315 2047 168330270 168331032 5.090000e-106 396.0
104 TraesCS6D01G353400 chr1D 75.850 853 139 36 1292 2094 6466998 6466163 8.580000e-99 372.0
105 TraesCS6D01G353400 chr1D 86.957 69 9 0 2753 2821 46491730 46491662 2.100000e-10 78.7
106 TraesCS6D01G353400 chrUn 79.304 546 68 24 1294 1829 9995840 9996350 2.420000e-89 340.0
107 TraesCS6D01G353400 chrUn 81.250 224 35 7 1901 2121 34315700 34315481 2.600000e-39 174.0
108 TraesCS6D01G353400 chr1B 73.950 833 153 37 1293 2077 60203478 60204294 1.930000e-70 278.0
109 TraesCS6D01G353400 chr1B 75.460 489 83 29 1805 2261 550351787 550351304 3.310000e-48 204.0
110 TraesCS6D01G353400 chr1B 91.304 69 6 0 2753 2821 66517144 66517076 2.080000e-15 95.3
111 TraesCS6D01G353400 chr1B 73.953 215 43 10 1804 2011 327695848 327695640 2.710000e-09 75.0
112 TraesCS6D01G353400 chr4A 80.053 376 63 9 1298 1665 676920554 676920183 1.160000e-67 268.0
113 TraesCS6D01G353400 chr4A 77.681 457 87 15 1669 2117 742845812 742845363 1.500000e-66 265.0
114 TraesCS6D01G353400 chr4A 91.429 70 4 2 6071 6139 581867380 581867312 2.080000e-15 95.3
115 TraesCS6D01G353400 chr5A 79.528 381 66 9 1290 1662 647607939 647608315 1.940000e-65 261.0
116 TraesCS6D01G353400 chr5A 90.476 63 6 0 2758 2820 3281585 3281647 4.500000e-12 84.2
117 TraesCS6D01G353400 chr5A 82.812 64 11 0 6945 7008 612976906 612976969 2.730000e-04 58.4
118 TraesCS6D01G353400 chr5B 75.154 487 81 24 1805 2258 67466936 67467415 7.170000e-45 193.0
119 TraesCS6D01G353400 chr5B 82.828 99 11 5 6710 6805 590463735 590463830 4.500000e-12 84.2
120 TraesCS6D01G353400 chr4B 75.723 173 37 5 3982 4152 43756389 43756220 1.620000e-11 82.4
121 TraesCS6D01G353400 chr3B 87.879 66 8 0 2760 2825 481628082 481628017 2.100000e-10 78.7
122 TraesCS6D01G353400 chr3B 77.344 128 18 8 6889 7008 669952470 669952594 1.630000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G353400 chr6D 449215344 449222351 7007 True 12942.000000 12942 100.000000 1 7008 1 chr6D.!!$R3 7007
1 TraesCS6D01G353400 chr6D 449247367 449253384 6017 False 679.000000 1592 89.102200 872 6025 5 chr6D.!!$F3 5153
2 TraesCS6D01G353400 chr6D 449186037 449190263 4226 True 553.400000 918 84.431200 256 5734 5 chr6D.!!$R4 5478
3 TraesCS6D01G353400 chr6A 595047462 595053466 6004 True 1266.600000 2084 89.964600 1 5994 5 chr6A.!!$R3 5993
4 TraesCS6D01G353400 chr6A 595070346 595076428 6082 False 623.200000 1258 87.591600 872 5733 5 chr6A.!!$F2 4861
5 TraesCS6D01G353400 chr6A 595023897 595030022 6125 True 614.250000 924 85.199750 559 5994 4 chr6A.!!$R2 5435
6 TraesCS6D01G353400 chr6B 680809063 680813572 4509 False 795.000000 1738 88.232500 872 5713 4 chr6B.!!$F1 4841
7 TraesCS6D01G353400 chr6B 680777514 680782276 4762 True 518.166667 902 87.123167 565 6025 6 chr6B.!!$R2 5460
8 TraesCS6D01G353400 chr6B 680858019 680862397 4378 False 473.166667 929 86.730333 620 5740 6 chr6B.!!$F2 5120
9 TraesCS6D01G353400 chr6B 79296016 79296796 780 True 278.000000 278 74.149000 1293 2042 1 chr6B.!!$R1 749
10 TraesCS6D01G353400 chr3D 35191358 35192339 981 True 1720.000000 1720 98.271000 6026 7008 1 chr3D.!!$R1 982
11 TraesCS6D01G353400 chr7D 105652964 105653947 983 True 1711.000000 1711 98.069000 6026 7008 1 chr7D.!!$R1 982
12 TraesCS6D01G353400 chr7D 419768176 419768677 501 False 481.000000 481 84.676000 5509 5994 1 chr7D.!!$F1 485
13 TraesCS6D01G353400 chr7D 487738043 487740345 2302 False 240.500000 344 91.991500 995 5994 2 chr7D.!!$F2 4999
14 TraesCS6D01G353400 chr2D 183814090 183815071 981 False 1709.000000 1709 98.069000 6026 7008 1 chr2D.!!$F5 982
15 TraesCS6D01G353400 chr2D 56079565 56080387 822 False 320.000000 320 74.940000 1315 2092 1 chr2D.!!$F3 777
16 TraesCS6D01G353400 chr4D 66040934 66041918 984 False 1696.000000 1696 97.766000 6026 7008 1 chr4D.!!$F2 982
17 TraesCS6D01G353400 chr7B 516464235 516465501 1266 False 611.000000 885 92.506500 4613 5999 2 chr7B.!!$F3 1386
18 TraesCS6D01G353400 chr7B 435790252 435790755 503 False 464.000000 464 84.118000 5509 5993 1 chr7B.!!$F2 484
19 TraesCS6D01G353400 chr7B 244220179 244220848 669 True 304.500000 335 83.362500 1666 2257 2 chr7B.!!$R1 591
20 TraesCS6D01G353400 chr7A 539327995 539328953 958 False 743.000000 743 81.192000 1315 2258 1 chr7A.!!$F1 943
21 TraesCS6D01G353400 chr7A 287209880 287210875 995 True 686.000000 686 80.039000 1293 2280 1 chr7A.!!$R3 987
22 TraesCS6D01G353400 chr7A 40242405 40243245 840 True 357.000000 357 75.177000 1317 2121 1 chr7A.!!$R1 804
23 TraesCS6D01G353400 chr7A 555650962 555651481 519 False 292.500000 337 91.463500 5513 5993 2 chr7A.!!$F2 480
24 TraesCS6D01G353400 chr7A 513414111 513417483 3372 True 279.500000 490 84.652250 1020 5990 4 chr7A.!!$R4 4970
25 TraesCS6D01G353400 chr1A 524683496 524684345 849 False 680.000000 680 81.850000 1428 2256 1 chr1A.!!$F1 828
26 TraesCS6D01G353400 chr3A 210577559 210578411 852 True 658.000000 658 81.323000 1431 2256 1 chr3A.!!$R1 825
27 TraesCS6D01G353400 chr5D 549200250 549201246 996 False 401.000000 401 75.099000 1315 2257 1 chr5D.!!$F1 942
28 TraesCS6D01G353400 chr1D 168330270 168331032 762 False 396.000000 396 76.943000 1315 2047 1 chr1D.!!$F1 732
29 TraesCS6D01G353400 chr1D 6466163 6466998 835 True 372.000000 372 75.850000 1292 2094 1 chr1D.!!$R1 802
30 TraesCS6D01G353400 chrUn 9995840 9996350 510 False 340.000000 340 79.304000 1294 1829 1 chrUn.!!$F1 535
31 TraesCS6D01G353400 chr1B 60203478 60204294 816 False 278.000000 278 73.950000 1293 2077 1 chr1B.!!$F1 784

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
512 885 0.320247 GGTGCTCAGCCATATCTCGG 60.320 60.000 0.00 0.00 0.00 4.63 F
514 887 0.760567 TGCTCAGCCATATCTCGGGT 60.761 55.000 0.00 0.00 33.53 5.28 F
721 1111 1.005569 TGGAGACGGAGATGTGTAGGT 59.994 52.381 0.00 0.00 0.00 3.08 F
2182 3557 0.532862 CCACCATCGAGCACCATACC 60.533 60.000 0.00 0.00 0.00 2.73 F
2668 4253 0.320421 ATTTGCCTCTACACGCGTGT 60.320 50.000 42.29 42.29 46.87 4.49 F
2734 4319 1.066929 GGGCAAACCTAAATGGCACAG 60.067 52.381 0.00 0.00 43.34 3.66 F
4261 12164 0.031994 GCACCCACGCAAGAAAACAT 59.968 50.000 0.00 0.00 43.62 2.71 F
4424 12327 0.461870 ACGTGCACTGTTTGAGCAGA 60.462 50.000 16.19 0.00 42.56 4.26 F
5607 15909 0.772124 TATTCCCATGGCCCCTCTCC 60.772 60.000 6.09 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 3175 0.599558 CATGGTTGAGTGCCTTGTGG 59.400 55.000 0.00 0.00 0.00 4.17 R
1912 3181 0.618458 TCCTACCATGGTTGAGTGCC 59.382 55.000 25.38 0.00 0.00 5.01 R
2659 4244 0.103572 AGTAAAGGTCACACGCGTGT 59.896 50.000 37.52 37.52 46.17 4.49 R
3116 8657 0.394938 TCGCTACAACCTCTTTGCCA 59.605 50.000 0.00 0.00 39.01 4.92 R
4242 12145 0.031994 ATGTTTTCTTGCGTGGGTGC 59.968 50.000 0.00 0.00 0.00 5.01 R
4641 12547 0.176680 ACATCGTCATCTCCAGTGCC 59.823 55.000 0.00 0.00 0.00 5.01 R
5999 16388 0.101579 GAGAGCCTAAGTCACTCGGC 59.898 60.000 9.55 9.55 42.79 5.54 R
6001 16390 1.202245 GCAGAGAGCCTAAGTCACTCG 60.202 57.143 0.00 0.00 37.23 4.18 R
6717 17114 7.609760 AATCAGCGACAACTAATATGAAACA 57.390 32.000 0.00 0.00 0.00 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 50 8.301720 TCTTGATTTCCAATTTCAGATTGTCAG 58.698 33.333 0.00 0.00 33.68 3.51
50 55 6.564709 TCCAATTTCAGATTGTCAGAACAG 57.435 37.500 0.00 0.00 36.57 3.16
57 62 2.107204 AGATTGTCAGAACAGCCCTTGT 59.893 45.455 0.00 0.00 43.45 3.16
70 75 6.374417 ACAGCCCTTGTTAAAGAAGATAGA 57.626 37.500 0.00 0.00 36.31 1.98
71 76 6.963322 ACAGCCCTTGTTAAAGAAGATAGAT 58.037 36.000 0.00 0.00 36.31 1.98
73 78 7.050377 CAGCCCTTGTTAAAGAAGATAGATCA 58.950 38.462 0.00 0.00 35.19 2.92
92 111 2.294233 TCACTTTGACCAGAAGCATTGC 59.706 45.455 0.00 0.00 0.00 3.56
105 124 6.424509 CCAGAAGCATTGCAATAGTTTTTCAA 59.575 34.615 12.53 0.00 0.00 2.69
113 132 7.769272 TTGCAATAGTTTTTCAAAAGTGAGG 57.231 32.000 0.00 0.00 34.49 3.86
129 148 9.606631 CAAAAGTGAGGATAACTTATTAGCTCT 57.393 33.333 0.00 0.00 39.45 4.09
159 178 1.949257 CCTTGACGAACAACAGGCC 59.051 57.895 0.00 0.00 34.56 5.19
164 183 1.234821 GACGAACAACAGGCCATCAA 58.765 50.000 5.01 0.00 0.00 2.57
166 185 0.950836 CGAACAACAGGCCATCAACA 59.049 50.000 5.01 0.00 0.00 3.33
167 186 1.334960 CGAACAACAGGCCATCAACAC 60.335 52.381 5.01 0.00 0.00 3.32
168 187 1.680735 GAACAACAGGCCATCAACACA 59.319 47.619 5.01 0.00 0.00 3.72
169 188 1.032014 ACAACAGGCCATCAACACAC 58.968 50.000 5.01 0.00 0.00 3.82
174 193 2.499289 ACAGGCCATCAACACACAAAAA 59.501 40.909 5.01 0.00 0.00 1.94
178 213 4.404073 AGGCCATCAACACACAAAAAGTAA 59.596 37.500 5.01 0.00 0.00 2.24
203 238 8.472007 AGAGTTTTGTGTGGTGGAAATTATAA 57.528 30.769 0.00 0.00 0.00 0.98
286 321 4.644234 TCACAACAGGCTTCTTTTGATTCA 59.356 37.500 0.00 0.00 33.64 2.57
434 473 5.047847 CGTATGTTCCTCGATTTGGTATGT 58.952 41.667 0.00 0.00 0.00 2.29
437 476 2.864343 GTTCCTCGATTTGGTATGTCGG 59.136 50.000 0.00 0.00 36.14 4.79
460 499 4.379394 GGCGCATTAACAAGACTTCATCAA 60.379 41.667 10.83 0.00 0.00 2.57
464 503 7.660059 CGCATTAACAAGACTTCATCAATTTG 58.340 34.615 0.00 0.00 0.00 2.32
481 520 2.736144 TTGAAGATACGTCGGCTTGT 57.264 45.000 0.00 0.00 0.00 3.16
508 547 1.069204 TCGAAGGTGCTCAGCCATATC 59.931 52.381 0.00 0.00 0.00 1.63
510 883 2.765122 GAAGGTGCTCAGCCATATCTC 58.235 52.381 0.00 0.00 0.00 2.75
512 885 0.320247 GGTGCTCAGCCATATCTCGG 60.320 60.000 0.00 0.00 0.00 4.63
514 887 0.760567 TGCTCAGCCATATCTCGGGT 60.761 55.000 0.00 0.00 33.53 5.28
650 1032 2.164624 TGTTTTGTTTTCACCCACTCGG 59.835 45.455 0.00 0.00 37.81 4.63
715 1105 1.633774 ACAACTGGAGACGGAGATGT 58.366 50.000 0.00 0.00 41.09 3.06
717 1107 1.273606 CAACTGGAGACGGAGATGTGT 59.726 52.381 0.00 0.00 41.09 3.72
719 1109 2.370349 ACTGGAGACGGAGATGTGTAG 58.630 52.381 0.00 0.00 41.09 2.74
721 1111 1.005569 TGGAGACGGAGATGTGTAGGT 59.994 52.381 0.00 0.00 0.00 3.08
722 1112 2.240414 TGGAGACGGAGATGTGTAGGTA 59.760 50.000 0.00 0.00 0.00 3.08
757 1165 2.098443 GTGTTTTGTTTCCTCTCGGCAA 59.902 45.455 0.00 0.00 0.00 4.52
758 1166 2.955660 TGTTTTGTTTCCTCTCGGCAAT 59.044 40.909 0.00 0.00 0.00 3.56
759 1167 3.383185 TGTTTTGTTTCCTCTCGGCAATT 59.617 39.130 0.00 0.00 0.00 2.32
760 1168 3.915437 TTTGTTTCCTCTCGGCAATTC 57.085 42.857 0.00 0.00 0.00 2.17
761 1169 2.559698 TGTTTCCTCTCGGCAATTCA 57.440 45.000 0.00 0.00 0.00 2.57
948 1400 1.151777 AACACAACAGAGACGCACCG 61.152 55.000 0.00 0.00 0.00 4.94
1124 1615 3.041351 CACGCACGCAAGCCAGTA 61.041 61.111 0.00 0.00 45.62 2.74
1153 1670 3.524606 GCCGGCGGTGTAGCTAGA 61.525 66.667 28.82 0.00 37.29 2.43
1307 1922 6.325596 GTGAAATAATCTCAAAACAGGCTCC 58.674 40.000 0.00 0.00 0.00 4.70
1311 1926 1.140312 TCTCAAAACAGGCTCCCACT 58.860 50.000 0.00 0.00 0.00 4.00
1368 2545 1.593006 CACGGCCGAATGATACAAGAC 59.407 52.381 35.90 0.00 0.00 3.01
1387 2564 4.551671 AGACAGTGATGTAGCCCTCTTAT 58.448 43.478 0.00 0.00 0.00 1.73
1401 2579 4.689983 GCCCTCTTATAAAGCCAATCCTGT 60.690 45.833 0.00 0.00 0.00 4.00
1424 2604 2.023414 AACCGGCAGACACAGAACGA 62.023 55.000 0.00 0.00 0.00 3.85
1429 2609 1.487452 GCAGACACAGAACGAACGCA 61.487 55.000 0.00 0.00 0.00 5.24
1436 2621 2.729360 CACAGAACGAACGCAACTATGA 59.271 45.455 0.00 0.00 0.00 2.15
1512 2704 1.812686 TAAGCTCCACGACAACGCCT 61.813 55.000 0.00 0.00 43.96 5.52
1618 2823 4.196193 ACCACAACGACATCTTCAAGAAA 58.804 39.130 0.00 0.00 0.00 2.52
1696 2953 1.374125 CGCCATGAGGAACGTGACA 60.374 57.895 0.00 0.00 37.69 3.58
1758 3022 3.398353 GAGAGGGAACGTCCGAGCG 62.398 68.421 0.00 0.00 45.39 5.03
1775 3039 3.041940 GACCCGTCGCAACACCTG 61.042 66.667 0.00 0.00 0.00 4.00
1912 3181 3.286751 CACCGCCCACACCACAAG 61.287 66.667 0.00 0.00 0.00 3.16
1955 3237 2.210116 GTGACGACACAACATCCACTT 58.790 47.619 13.14 0.00 45.32 3.16
1963 3245 1.985159 ACAACATCCACTTCTAGCCCA 59.015 47.619 0.00 0.00 0.00 5.36
2182 3557 0.532862 CCACCATCGAGCACCATACC 60.533 60.000 0.00 0.00 0.00 2.73
2183 3558 0.532862 CACCATCGAGCACCATACCC 60.533 60.000 0.00 0.00 0.00 3.69
2184 3559 1.300931 CCATCGAGCACCATACCCG 60.301 63.158 0.00 0.00 0.00 5.28
2185 3560 1.300931 CATCGAGCACCATACCCGG 60.301 63.158 0.00 0.00 0.00 5.73
2235 3623 1.123928 CGAAGCCCAACCTCTCCTAT 58.876 55.000 0.00 0.00 0.00 2.57
2294 3689 4.447180 GCCTAGCCCAACTTATTTATCCCA 60.447 45.833 0.00 0.00 0.00 4.37
2342 3737 5.431765 TGCAGATTCTCAAAATAGTCTCCC 58.568 41.667 0.00 0.00 0.00 4.30
2343 3738 4.509600 GCAGATTCTCAAAATAGTCTCCCG 59.490 45.833 0.00 0.00 0.00 5.14
2344 3739 5.665459 CAGATTCTCAAAATAGTCTCCCGT 58.335 41.667 0.00 0.00 0.00 5.28
2346 3741 3.887621 TCTCAAAATAGTCTCCCGTGG 57.112 47.619 0.00 0.00 0.00 4.94
2348 3743 3.835978 TCTCAAAATAGTCTCCCGTGGAA 59.164 43.478 0.00 0.00 0.00 3.53
2349 3744 4.469945 TCTCAAAATAGTCTCCCGTGGAAT 59.530 41.667 0.00 0.00 0.00 3.01
2350 3745 4.513442 TCAAAATAGTCTCCCGTGGAATG 58.487 43.478 0.00 0.00 0.00 2.67
2351 3746 4.019681 TCAAAATAGTCTCCCGTGGAATGT 60.020 41.667 0.00 0.00 0.00 2.71
2372 3772 4.830600 TGTGGTTTGTTTCCCTAGATTTCC 59.169 41.667 0.00 0.00 0.00 3.13
2402 3802 2.307934 TTTTGGGTTGCTTTCTGTGC 57.692 45.000 0.00 0.00 0.00 4.57
2488 4070 7.551262 AGCCGTAACAAATAGTGTGAATTATCA 59.449 33.333 0.00 0.00 40.60 2.15
2489 4071 8.342634 GCCGTAACAAATAGTGTGAATTATCAT 58.657 33.333 0.00 0.00 40.60 2.45
2512 4094 8.046107 TCATAGTGTGAATAATCATGTGTCCAA 58.954 33.333 0.00 0.00 38.01 3.53
2531 4113 4.221041 TCCAATACTACAACCGTGACATCA 59.779 41.667 0.00 0.00 0.00 3.07
2533 4115 5.584649 CCAATACTACAACCGTGACATCAAT 59.415 40.000 0.00 0.00 0.00 2.57
2537 4119 2.343101 ACAACCGTGACATCAATACCG 58.657 47.619 0.00 0.00 0.00 4.02
2581 4166 3.460144 GCGACGCCACTGTTAGTC 58.540 61.111 9.14 0.00 0.00 2.59
2610 4195 2.874086 CCGCATACATGTGATGTGTCAT 59.126 45.455 9.11 0.00 44.60 3.06
2645 4230 7.012959 TCGTCACTATTAGCTTGTAGTACTG 57.987 40.000 5.39 0.00 30.37 2.74
2659 4244 6.599356 TGTAGTACTGTTCATTTGCCTCTA 57.401 37.500 5.39 0.00 0.00 2.43
2660 4245 6.395629 TGTAGTACTGTTCATTTGCCTCTAC 58.604 40.000 5.39 0.00 0.00 2.59
2662 4247 5.238583 AGTACTGTTCATTTGCCTCTACAC 58.761 41.667 0.00 0.00 0.00 2.90
2664 4249 1.804151 TGTTCATTTGCCTCTACACGC 59.196 47.619 0.00 0.00 0.00 5.34
2668 4253 0.320421 ATTTGCCTCTACACGCGTGT 60.320 50.000 42.29 42.29 46.87 4.49
2687 4272 6.513884 CGCGTGTGACCTTTACTATTCCTATA 60.514 42.308 0.00 0.00 0.00 1.31
2689 4274 8.517878 GCGTGTGACCTTTACTATTCCTATATA 58.482 37.037 0.00 0.00 0.00 0.86
2734 4319 1.066929 GGGCAAACCTAAATGGCACAG 60.067 52.381 0.00 0.00 43.34 3.66
2772 5500 5.538877 TCATTGATTAGTACTCCCTCCCTT 58.461 41.667 0.00 0.00 0.00 3.95
2832 5567 7.062749 ACTATATATGGACCGAAGCAAAGAA 57.937 36.000 2.68 0.00 0.00 2.52
2834 5569 8.157476 ACTATATATGGACCGAAGCAAAGAAAT 58.843 33.333 2.68 0.00 0.00 2.17
2839 5574 3.127030 GGACCGAAGCAAAGAAATAGTGG 59.873 47.826 0.00 0.00 0.00 4.00
2841 5576 4.589908 ACCGAAGCAAAGAAATAGTGGAT 58.410 39.130 0.00 0.00 0.00 3.41
2865 5993 4.748102 ACATTTGTCATTAACGTCGACACT 59.252 37.500 17.16 3.87 39.29 3.55
2876 6004 2.223876 ACGTCGACACTAGCCTTTTTCA 60.224 45.455 17.16 0.00 0.00 2.69
2895 6025 6.723298 TTTCAGTTTTGGAATCTTTAGGCA 57.277 33.333 0.00 0.00 0.00 4.75
2910 6041 7.543359 TCTTTAGGCAACCTACTGTTAGTTA 57.457 36.000 0.00 0.00 35.63 2.24
2915 6046 9.880157 TTAGGCAACCTACTGTTAGTTATAAAG 57.120 33.333 0.00 0.00 35.63 1.85
2918 6049 6.596497 GCAACCTACTGTTAGTTATAAAGGCA 59.404 38.462 0.00 0.00 34.69 4.75
2919 6050 7.282450 GCAACCTACTGTTAGTTATAAAGGCAT 59.718 37.037 0.00 0.00 34.69 4.40
2994 7743 2.591923 TCCTTTGCCTTTGTGCATGTA 58.408 42.857 0.00 0.00 41.70 2.29
3030 7797 6.764379 TCCAGTGTGTTGTATGAATCAAGTA 58.236 36.000 0.00 0.00 0.00 2.24
3116 8657 4.161102 ACTTTACTAGGACTTGACTGGCT 58.839 43.478 0.00 0.00 0.00 4.75
3145 8691 6.183309 AGAGGTTGTAGCGATTTTGATTTC 57.817 37.500 0.00 0.00 0.00 2.17
3146 8692 5.940470 AGAGGTTGTAGCGATTTTGATTTCT 59.060 36.000 0.00 0.00 0.00 2.52
3521 9098 6.216569 GCTAGTGTGCTATGAGCTGTATAAA 58.783 40.000 0.00 0.00 42.97 1.40
3647 10358 7.792374 ATTATGTGATATGCTCAAACGAGTT 57.208 32.000 0.00 0.00 35.07 3.01
3696 10407 8.976986 ATTCAGCAGATTGATTAGACAAAAAC 57.023 30.769 0.00 0.00 33.44 2.43
3732 10446 9.499479 AACAAAAATTGGTCATTTGCATGTATA 57.501 25.926 0.00 0.00 37.52 1.47
3769 10483 2.116827 TGAACCTTGTTGACCGTGTT 57.883 45.000 0.00 0.00 0.00 3.32
3903 10629 6.035866 GTGAGCACTGAATTGAGTTGATAGAG 59.964 42.308 0.00 0.00 0.00 2.43
3968 10699 2.171448 ACTTGCATGTACTCCCTCCATC 59.829 50.000 2.92 0.00 0.00 3.51
3977 10708 3.953542 ACTCCCTCCATCCCAAAATAC 57.046 47.619 0.00 0.00 0.00 1.89
4194 12096 3.308438 TTTGGAACAGAGGTAGTACGC 57.692 47.619 0.00 0.00 42.39 4.42
4218 12121 8.097514 GCAATAGCGTTTCTTTTTAGAGAATG 57.902 34.615 0.00 0.00 35.70 2.67
4219 12122 7.218963 GCAATAGCGTTTCTTTTTAGAGAATGG 59.781 37.037 0.00 0.00 35.70 3.16
4220 12123 7.923414 ATAGCGTTTCTTTTTAGAGAATGGT 57.077 32.000 0.00 0.00 35.70 3.55
4221 12124 6.635030 AGCGTTTCTTTTTAGAGAATGGTT 57.365 33.333 0.00 0.00 35.70 3.67
4222 12125 6.669278 AGCGTTTCTTTTTAGAGAATGGTTC 58.331 36.000 0.00 0.00 35.70 3.62
4223 12126 6.486993 AGCGTTTCTTTTTAGAGAATGGTTCT 59.513 34.615 0.00 0.00 44.21 3.01
4224 12127 7.013369 AGCGTTTCTTTTTAGAGAATGGTTCTT 59.987 33.333 0.00 0.00 40.87 2.52
4225 12128 7.323895 GCGTTTCTTTTTAGAGAATGGTTCTTC 59.676 37.037 0.00 0.00 40.87 2.87
4226 12129 8.560374 CGTTTCTTTTTAGAGAATGGTTCTTCT 58.440 33.333 0.00 0.00 40.87 2.85
4230 12133 9.490379 TCTTTTTAGAGAATGGTTCTTCTACAC 57.510 33.333 0.00 0.00 40.87 2.90
4231 12134 8.617290 TTTTTAGAGAATGGTTCTTCTACACC 57.383 34.615 0.00 0.00 40.87 4.16
4232 12135 4.828072 AGAGAATGGTTCTTCTACACCC 57.172 45.455 0.00 0.00 40.87 4.61
4233 12136 4.168101 AGAGAATGGTTCTTCTACACCCA 58.832 43.478 0.00 0.00 40.87 4.51
4234 12137 4.020128 AGAGAATGGTTCTTCTACACCCAC 60.020 45.833 0.00 0.00 40.87 4.61
4235 12138 3.910627 AGAATGGTTCTTCTACACCCACT 59.089 43.478 0.00 0.00 36.36 4.00
4236 12139 3.983044 ATGGTTCTTCTACACCCACTC 57.017 47.619 0.00 0.00 31.24 3.51
4237 12140 2.972348 TGGTTCTTCTACACCCACTCT 58.028 47.619 0.00 0.00 31.24 3.24
4238 12141 2.897969 TGGTTCTTCTACACCCACTCTC 59.102 50.000 0.00 0.00 31.24 3.20
4239 12142 2.094649 GGTTCTTCTACACCCACTCTCG 60.095 54.545 0.00 0.00 0.00 4.04
4240 12143 1.835494 TCTTCTACACCCACTCTCGG 58.165 55.000 0.00 0.00 0.00 4.63
4241 12144 1.075050 TCTTCTACACCCACTCTCGGT 59.925 52.381 0.00 0.00 0.00 4.69
4245 12148 2.357517 CACCCACTCTCGGTGCAC 60.358 66.667 8.80 8.80 44.10 4.57
4246 12149 3.626924 ACCCACTCTCGGTGCACC 61.627 66.667 26.78 26.78 44.08 5.01
4247 12150 4.394712 CCCACTCTCGGTGCACCC 62.395 72.222 29.95 12.55 44.08 4.61
4248 12151 3.625897 CCACTCTCGGTGCACCCA 61.626 66.667 29.95 17.50 44.08 4.51
4249 12152 2.357517 CACTCTCGGTGCACCCAC 60.358 66.667 29.95 5.86 39.22 4.61
4250 12153 3.991051 ACTCTCGGTGCACCCACG 61.991 66.667 29.95 18.33 43.00 4.94
4256 12159 2.904866 GGTGCACCCACGCAAGAA 60.905 61.111 26.31 0.00 45.14 2.52
4257 12160 2.485795 GGTGCACCCACGCAAGAAA 61.486 57.895 26.31 0.00 45.14 2.52
4258 12161 1.435515 GTGCACCCACGCAAGAAAA 59.564 52.632 5.22 0.00 45.14 2.29
4259 12162 0.869880 GTGCACCCACGCAAGAAAAC 60.870 55.000 5.22 0.00 45.14 2.43
4260 12163 1.315981 TGCACCCACGCAAGAAAACA 61.316 50.000 0.00 0.00 39.45 2.83
4261 12164 0.031994 GCACCCACGCAAGAAAACAT 59.968 50.000 0.00 0.00 43.62 2.71
4262 12165 1.268352 GCACCCACGCAAGAAAACATA 59.732 47.619 0.00 0.00 43.62 2.29
4263 12166 2.094752 GCACCCACGCAAGAAAACATAT 60.095 45.455 0.00 0.00 43.62 1.78
4264 12167 3.758300 CACCCACGCAAGAAAACATATC 58.242 45.455 0.00 0.00 43.62 1.63
4265 12168 3.190327 CACCCACGCAAGAAAACATATCA 59.810 43.478 0.00 0.00 43.62 2.15
4266 12169 3.823873 ACCCACGCAAGAAAACATATCAA 59.176 39.130 0.00 0.00 43.62 2.57
4267 12170 4.279671 ACCCACGCAAGAAAACATATCAAA 59.720 37.500 0.00 0.00 43.62 2.69
4268 12171 5.221342 ACCCACGCAAGAAAACATATCAAAA 60.221 36.000 0.00 0.00 43.62 2.44
4269 12172 5.118510 CCCACGCAAGAAAACATATCAAAAC 59.881 40.000 0.00 0.00 43.62 2.43
4270 12173 5.689514 CCACGCAAGAAAACATATCAAAACA 59.310 36.000 0.00 0.00 43.62 2.83
4271 12174 6.365789 CCACGCAAGAAAACATATCAAAACAT 59.634 34.615 0.00 0.00 43.62 2.71
4272 12175 7.095691 CCACGCAAGAAAACATATCAAAACATT 60.096 33.333 0.00 0.00 43.62 2.71
4273 12176 8.274939 CACGCAAGAAAACATATCAAAACATTT 58.725 29.630 0.00 0.00 43.62 2.32
4274 12177 8.487176 ACGCAAGAAAACATATCAAAACATTTC 58.513 29.630 0.00 0.00 43.62 2.17
4275 12178 7.679634 CGCAAGAAAACATATCAAAACATTTCG 59.320 33.333 0.00 0.00 43.02 3.46
4276 12179 8.698854 GCAAGAAAACATATCAAAACATTTCGA 58.301 29.630 0.00 0.00 32.21 3.71
4302 12205 8.925161 AAAAATCTGAAACTTCGTGAAAATGA 57.075 26.923 0.00 0.00 0.00 2.57
4303 12206 9.533253 AAAAATCTGAAACTTCGTGAAAATGAT 57.467 25.926 0.00 0.00 0.00 2.45
4304 12207 8.733857 AAATCTGAAACTTCGTGAAAATGATC 57.266 30.769 0.00 0.00 0.00 2.92
4305 12208 6.859420 TCTGAAACTTCGTGAAAATGATCA 57.141 33.333 0.00 0.00 0.00 2.92
4306 12209 7.439157 TCTGAAACTTCGTGAAAATGATCAT 57.561 32.000 1.18 1.18 0.00 2.45
4307 12210 7.521529 TCTGAAACTTCGTGAAAATGATCATC 58.478 34.615 9.06 0.00 0.00 2.92
4308 12211 7.173047 TCTGAAACTTCGTGAAAATGATCATCA 59.827 33.333 9.06 0.42 0.00 3.07
4309 12212 7.647228 TGAAACTTCGTGAAAATGATCATCAA 58.353 30.769 9.06 0.00 0.00 2.57
4310 12213 7.591057 TGAAACTTCGTGAAAATGATCATCAAC 59.409 33.333 9.06 4.53 0.00 3.18
4311 12214 6.558771 ACTTCGTGAAAATGATCATCAACA 57.441 33.333 9.06 6.61 0.00 3.33
4312 12215 6.969366 ACTTCGTGAAAATGATCATCAACAA 58.031 32.000 9.06 0.00 0.00 2.83
4313 12216 7.424803 ACTTCGTGAAAATGATCATCAACAAA 58.575 30.769 9.06 1.88 0.00 2.83
4314 12217 8.084073 ACTTCGTGAAAATGATCATCAACAAAT 58.916 29.630 9.06 0.00 0.00 2.32
4315 12218 7.800015 TCGTGAAAATGATCATCAACAAATG 57.200 32.000 9.06 0.00 0.00 2.32
4316 12219 7.369607 TCGTGAAAATGATCATCAACAAATGT 58.630 30.769 9.06 0.00 0.00 2.71
4317 12220 7.866898 TCGTGAAAATGATCATCAACAAATGTT 59.133 29.630 9.06 0.00 39.12 2.71
4318 12221 9.127006 CGTGAAAATGATCATCAACAAATGTTA 57.873 29.630 9.06 0.00 36.32 2.41
4322 12225 8.951787 AAATGATCATCAACAAATGTTATGGG 57.048 30.769 9.06 0.00 36.32 4.00
4323 12226 7.901283 ATGATCATCAACAAATGTTATGGGA 57.099 32.000 1.18 0.00 36.32 4.37
4324 12227 7.337480 TGATCATCAACAAATGTTATGGGAG 57.663 36.000 0.00 0.00 36.32 4.30
4325 12228 5.581126 TCATCAACAAATGTTATGGGAGC 57.419 39.130 0.00 0.00 36.32 4.70
4326 12229 5.263599 TCATCAACAAATGTTATGGGAGCT 58.736 37.500 0.00 0.00 36.32 4.09
4327 12230 5.716228 TCATCAACAAATGTTATGGGAGCTT 59.284 36.000 0.00 0.00 36.32 3.74
4328 12231 5.389859 TCAACAAATGTTATGGGAGCTTG 57.610 39.130 0.00 0.00 36.32 4.01
4329 12232 3.874392 ACAAATGTTATGGGAGCTTGC 57.126 42.857 0.00 0.00 0.00 4.01
4330 12233 3.164268 ACAAATGTTATGGGAGCTTGCA 58.836 40.909 0.00 0.00 0.00 4.08
4331 12234 3.577848 ACAAATGTTATGGGAGCTTGCAA 59.422 39.130 0.00 0.00 0.00 4.08
4332 12235 4.040217 ACAAATGTTATGGGAGCTTGCAAA 59.960 37.500 0.00 0.00 0.00 3.68
4333 12236 4.888326 AATGTTATGGGAGCTTGCAAAA 57.112 36.364 0.00 0.00 0.00 2.44
4334 12237 5.425196 AATGTTATGGGAGCTTGCAAAAT 57.575 34.783 0.00 0.00 0.00 1.82
4335 12238 4.888326 TGTTATGGGAGCTTGCAAAATT 57.112 36.364 0.00 0.00 0.00 1.82
4336 12239 5.226194 TGTTATGGGAGCTTGCAAAATTT 57.774 34.783 0.00 0.00 0.00 1.82
4337 12240 4.996122 TGTTATGGGAGCTTGCAAAATTTG 59.004 37.500 0.00 0.57 0.00 2.32
4338 12241 2.547299 TGGGAGCTTGCAAAATTTGG 57.453 45.000 7.89 0.00 0.00 3.28
4339 12242 1.767681 TGGGAGCTTGCAAAATTTGGT 59.232 42.857 7.89 0.00 0.00 3.67
4340 12243 2.145536 GGGAGCTTGCAAAATTTGGTG 58.854 47.619 7.89 0.00 0.00 4.17
4341 12244 2.145536 GGAGCTTGCAAAATTTGGTGG 58.854 47.619 7.89 0.00 0.00 4.61
4342 12245 2.485302 GGAGCTTGCAAAATTTGGTGGT 60.485 45.455 7.89 0.00 0.00 4.16
4343 12246 2.802247 GAGCTTGCAAAATTTGGTGGTC 59.198 45.455 7.89 0.00 0.00 4.02
4344 12247 2.170187 AGCTTGCAAAATTTGGTGGTCA 59.830 40.909 7.89 0.00 0.00 4.02
4345 12248 2.941720 GCTTGCAAAATTTGGTGGTCAA 59.058 40.909 7.89 2.25 0.00 3.18
4358 12261 6.582677 TTGGTGGTCAAATAACATACAAGG 57.417 37.500 0.00 0.00 31.46 3.61
4359 12262 5.882040 TGGTGGTCAAATAACATACAAGGA 58.118 37.500 0.00 0.00 0.00 3.36
4360 12263 5.943416 TGGTGGTCAAATAACATACAAGGAG 59.057 40.000 0.00 0.00 0.00 3.69
4361 12264 5.163652 GGTGGTCAAATAACATACAAGGAGC 60.164 44.000 0.00 0.00 0.00 4.70
4362 12265 5.648092 GTGGTCAAATAACATACAAGGAGCT 59.352 40.000 0.00 0.00 0.00 4.09
4363 12266 5.880332 TGGTCAAATAACATACAAGGAGCTC 59.120 40.000 4.71 4.71 0.00 4.09
4364 12267 6.116126 GGTCAAATAACATACAAGGAGCTCT 58.884 40.000 14.64 0.00 0.00 4.09
4365 12268 6.258947 GGTCAAATAACATACAAGGAGCTCTC 59.741 42.308 14.64 3.76 0.00 3.20
4366 12269 7.044798 GTCAAATAACATACAAGGAGCTCTCT 58.955 38.462 14.64 6.28 0.00 3.10
4367 12270 8.198109 GTCAAATAACATACAAGGAGCTCTCTA 58.802 37.037 14.64 0.00 0.00 2.43
4368 12271 8.198109 TCAAATAACATACAAGGAGCTCTCTAC 58.802 37.037 14.64 0.00 0.00 2.59
4369 12272 7.661536 AATAACATACAAGGAGCTCTCTACA 57.338 36.000 14.64 0.00 0.00 2.74
4370 12273 7.661536 ATAACATACAAGGAGCTCTCTACAA 57.338 36.000 14.64 0.00 0.00 2.41
4371 12274 6.360370 AACATACAAGGAGCTCTCTACAAA 57.640 37.500 14.64 0.00 0.00 2.83
4372 12275 6.360370 ACATACAAGGAGCTCTCTACAAAA 57.640 37.500 14.64 0.00 0.00 2.44
4373 12276 6.769512 ACATACAAGGAGCTCTCTACAAAAA 58.230 36.000 14.64 0.00 0.00 1.94
4407 12310 9.825972 ATCACTGAAAATTAGTCAAAATGTACG 57.174 29.630 0.00 0.00 0.00 3.67
4408 12311 8.832521 TCACTGAAAATTAGTCAAAATGTACGT 58.167 29.630 0.00 0.00 0.00 3.57
4409 12312 8.891928 CACTGAAAATTAGTCAAAATGTACGTG 58.108 33.333 0.00 0.00 0.00 4.49
4410 12313 7.589954 ACTGAAAATTAGTCAAAATGTACGTGC 59.410 33.333 0.00 0.00 0.00 5.34
4411 12314 7.418408 TGAAAATTAGTCAAAATGTACGTGCA 58.582 30.769 9.28 9.28 0.00 4.57
4412 12315 7.377397 TGAAAATTAGTCAAAATGTACGTGCAC 59.623 33.333 8.99 6.82 0.00 4.57
4413 12316 6.554334 AATTAGTCAAAATGTACGTGCACT 57.446 33.333 16.19 2.84 0.00 4.40
4414 12317 3.878086 AGTCAAAATGTACGTGCACTG 57.122 42.857 16.19 11.05 0.00 3.66
4415 12318 3.202906 AGTCAAAATGTACGTGCACTGT 58.797 40.909 16.19 16.29 0.00 3.55
4416 12319 3.625764 AGTCAAAATGTACGTGCACTGTT 59.374 39.130 16.19 0.63 0.00 3.16
4417 12320 4.095782 AGTCAAAATGTACGTGCACTGTTT 59.904 37.500 16.19 7.19 0.00 2.83
4418 12321 4.204168 GTCAAAATGTACGTGCACTGTTTG 59.796 41.667 22.28 22.28 0.00 2.93
4419 12322 4.095036 TCAAAATGTACGTGCACTGTTTGA 59.905 37.500 24.75 24.75 33.45 2.69
4420 12323 3.878086 AATGTACGTGCACTGTTTGAG 57.122 42.857 16.19 0.00 0.00 3.02
4421 12324 0.934496 TGTACGTGCACTGTTTGAGC 59.066 50.000 16.19 4.75 0.00 4.26
4422 12325 0.934496 GTACGTGCACTGTTTGAGCA 59.066 50.000 16.19 0.00 39.83 4.26
4423 12326 1.070577 GTACGTGCACTGTTTGAGCAG 60.071 52.381 16.19 0.00 42.56 4.24
4424 12327 0.461870 ACGTGCACTGTTTGAGCAGA 60.462 50.000 16.19 0.00 42.56 4.26
4425 12328 0.870393 CGTGCACTGTTTGAGCAGAT 59.130 50.000 16.19 0.00 42.56 2.90
4426 12329 1.265095 CGTGCACTGTTTGAGCAGATT 59.735 47.619 16.19 0.00 42.56 2.40
4427 12330 2.287188 CGTGCACTGTTTGAGCAGATTT 60.287 45.455 16.19 0.00 42.56 2.17
4428 12331 3.709987 GTGCACTGTTTGAGCAGATTTT 58.290 40.909 10.32 0.00 42.56 1.82
4429 12332 3.488310 GTGCACTGTTTGAGCAGATTTTG 59.512 43.478 10.32 0.00 42.56 2.44
4430 12333 3.130869 TGCACTGTTTGAGCAGATTTTGT 59.869 39.130 1.73 0.00 37.35 2.83
4431 12334 4.337836 TGCACTGTTTGAGCAGATTTTGTA 59.662 37.500 1.73 0.00 37.35 2.41
4432 12335 5.163571 TGCACTGTTTGAGCAGATTTTGTAA 60.164 36.000 1.73 0.00 37.35 2.41
4433 12336 5.922544 GCACTGTTTGAGCAGATTTTGTAAT 59.077 36.000 1.73 0.00 39.62 1.89
4434 12337 6.421801 GCACTGTTTGAGCAGATTTTGTAATT 59.578 34.615 1.73 0.00 39.62 1.40
4435 12338 7.042523 GCACTGTTTGAGCAGATTTTGTAATTT 60.043 33.333 1.73 0.00 39.62 1.82
4436 12339 8.819974 CACTGTTTGAGCAGATTTTGTAATTTT 58.180 29.630 1.73 0.00 39.62 1.82
4437 12340 8.819974 ACTGTTTGAGCAGATTTTGTAATTTTG 58.180 29.630 1.73 0.00 39.62 2.44
4438 12341 8.715191 TGTTTGAGCAGATTTTGTAATTTTGT 57.285 26.923 0.00 0.00 0.00 2.83
4439 12342 8.816144 TGTTTGAGCAGATTTTGTAATTTTGTC 58.184 29.630 0.00 0.00 0.00 3.18
4440 12343 9.034544 GTTTGAGCAGATTTTGTAATTTTGTCT 57.965 29.630 0.00 0.00 0.00 3.41
4441 12344 9.598517 TTTGAGCAGATTTTGTAATTTTGTCTT 57.401 25.926 0.00 0.00 0.00 3.01
4442 12345 9.598517 TTGAGCAGATTTTGTAATTTTGTCTTT 57.401 25.926 0.00 0.00 0.00 2.52
4443 12346 9.598517 TGAGCAGATTTTGTAATTTTGTCTTTT 57.401 25.926 0.00 0.00 0.00 2.27
4461 12364 2.717580 TTTTGTAGAGCGCTTCTCGA 57.282 45.000 13.26 1.66 46.44 4.04
4462 12365 2.717580 TTTGTAGAGCGCTTCTCGAA 57.282 45.000 13.26 8.24 46.44 3.71
4463 12366 2.941453 TTGTAGAGCGCTTCTCGAAT 57.059 45.000 13.26 0.00 46.44 3.34
4464 12367 2.194800 TGTAGAGCGCTTCTCGAATG 57.805 50.000 13.26 0.00 46.44 2.67
4465 12368 1.472878 TGTAGAGCGCTTCTCGAATGT 59.527 47.619 13.26 0.00 46.44 2.71
4466 12369 2.094700 TGTAGAGCGCTTCTCGAATGTT 60.095 45.455 13.26 0.00 46.44 2.71
4467 12370 2.941453 AGAGCGCTTCTCGAATGTTA 57.059 45.000 13.26 0.00 46.44 2.41
4468 12371 3.444703 AGAGCGCTTCTCGAATGTTAT 57.555 42.857 13.26 0.00 46.44 1.89
4469 12372 3.786635 AGAGCGCTTCTCGAATGTTATT 58.213 40.909 13.26 0.00 46.44 1.40
4470 12373 4.184629 AGAGCGCTTCTCGAATGTTATTT 58.815 39.130 13.26 0.00 46.44 1.40
4471 12374 4.033358 AGAGCGCTTCTCGAATGTTATTTG 59.967 41.667 13.26 0.00 46.44 2.32
4472 12375 3.932710 AGCGCTTCTCGAATGTTATTTGA 59.067 39.130 2.64 0.00 41.67 2.69
4473 12376 4.022475 GCGCTTCTCGAATGTTATTTGAC 58.978 43.478 0.00 0.00 41.67 3.18
4474 12377 4.578601 CGCTTCTCGAATGTTATTTGACC 58.421 43.478 0.00 0.00 41.67 4.02
4475 12378 4.092821 CGCTTCTCGAATGTTATTTGACCA 59.907 41.667 0.00 0.00 41.67 4.02
4476 12379 5.324697 GCTTCTCGAATGTTATTTGACCAC 58.675 41.667 0.00 0.00 0.00 4.16
4477 12380 5.673818 GCTTCTCGAATGTTATTTGACCACC 60.674 44.000 0.00 0.00 0.00 4.61
4478 12381 4.900684 TCTCGAATGTTATTTGACCACCA 58.099 39.130 0.00 0.00 0.00 4.17
4479 12382 5.309638 TCTCGAATGTTATTTGACCACCAA 58.690 37.500 0.00 0.00 0.00 3.67
4481 12384 5.764131 TCGAATGTTATTTGACCACCAAAC 58.236 37.500 0.00 0.00 46.41 2.93
4482 12385 5.533154 TCGAATGTTATTTGACCACCAAACT 59.467 36.000 0.00 0.00 46.41 2.66
4483 12386 6.039941 TCGAATGTTATTTGACCACCAAACTT 59.960 34.615 0.00 0.00 46.41 2.66
4484 12387 6.699642 CGAATGTTATTTGACCACCAAACTTT 59.300 34.615 0.00 0.00 46.41 2.66
4485 12388 7.306515 CGAATGTTATTTGACCACCAAACTTTG 60.307 37.037 0.00 0.00 46.41 2.77
4486 12389 5.112686 TGTTATTTGACCACCAAACTTTGC 58.887 37.500 0.00 0.00 46.41 3.68
4487 12390 3.902881 ATTTGACCACCAAACTTTGCA 57.097 38.095 0.00 0.00 46.41 4.08
4488 12391 3.685139 TTTGACCACCAAACTTTGCAA 57.315 38.095 0.00 0.00 39.65 4.08
4489 12392 3.685139 TTGACCACCAAACTTTGCAAA 57.315 38.095 12.14 12.14 0.00 3.68
4490 12393 2.966050 TGACCACCAAACTTTGCAAAC 58.034 42.857 8.05 0.00 0.00 2.93
4491 12394 2.276201 GACCACCAAACTTTGCAAACC 58.724 47.619 8.05 0.00 0.00 3.27
4492 12395 1.065782 ACCACCAAACTTTGCAAACCC 60.066 47.619 8.05 0.00 0.00 4.11
4493 12396 1.209261 CCACCAAACTTTGCAAACCCT 59.791 47.619 8.05 0.00 0.00 4.34
4494 12397 2.549926 CACCAAACTTTGCAAACCCTC 58.450 47.619 8.05 0.00 0.00 4.30
4495 12398 2.093764 CACCAAACTTTGCAAACCCTCA 60.094 45.455 8.05 0.00 0.00 3.86
4496 12399 2.771372 ACCAAACTTTGCAAACCCTCAT 59.229 40.909 8.05 0.00 0.00 2.90
4497 12400 3.964031 ACCAAACTTTGCAAACCCTCATA 59.036 39.130 8.05 0.00 0.00 2.15
4498 12401 4.407296 ACCAAACTTTGCAAACCCTCATAA 59.593 37.500 8.05 0.00 0.00 1.90
4499 12402 4.749598 CCAAACTTTGCAAACCCTCATAAC 59.250 41.667 8.05 0.00 0.00 1.89
4500 12403 5.355596 CAAACTTTGCAAACCCTCATAACA 58.644 37.500 8.05 0.00 0.00 2.41
4501 12404 5.806654 AACTTTGCAAACCCTCATAACAT 57.193 34.783 8.05 0.00 0.00 2.71
4502 12405 5.806654 ACTTTGCAAACCCTCATAACATT 57.193 34.783 8.05 0.00 0.00 2.71
4503 12406 6.173427 ACTTTGCAAACCCTCATAACATTT 57.827 33.333 8.05 0.00 0.00 2.32
4504 12407 5.990996 ACTTTGCAAACCCTCATAACATTTG 59.009 36.000 8.05 0.00 34.17 2.32
4505 12408 5.543507 TTGCAAACCCTCATAACATTTGT 57.456 34.783 0.00 0.00 33.70 2.83
4506 12409 5.543507 TGCAAACCCTCATAACATTTGTT 57.456 34.783 1.08 1.08 41.73 2.83
4507 12410 5.295950 TGCAAACCCTCATAACATTTGTTG 58.704 37.500 6.21 0.00 38.90 3.33
4508 12411 5.069648 TGCAAACCCTCATAACATTTGTTGA 59.930 36.000 6.21 0.00 38.90 3.18
4509 12412 6.165577 GCAAACCCTCATAACATTTGTTGAT 58.834 36.000 6.21 0.00 38.90 2.57
4510 12413 6.091169 GCAAACCCTCATAACATTTGTTGATG 59.909 38.462 6.21 6.43 38.90 3.07
4511 12414 7.377398 CAAACCCTCATAACATTTGTTGATGA 58.623 34.615 6.21 9.61 38.90 2.92
4512 12415 7.722949 AACCCTCATAACATTTGTTGATGAT 57.277 32.000 6.21 0.00 38.90 2.45
4513 12416 7.338800 ACCCTCATAACATTTGTTGATGATC 57.661 36.000 6.21 0.00 38.90 2.92
4514 12417 6.891361 ACCCTCATAACATTTGTTGATGATCA 59.109 34.615 0.00 0.00 38.90 2.92
4515 12418 7.562454 ACCCTCATAACATTTGTTGATGATCAT 59.438 33.333 8.25 8.25 38.90 2.45
4516 12419 8.418662 CCCTCATAACATTTGTTGATGATCATT 58.581 33.333 10.14 0.00 38.90 2.57
4517 12420 9.811995 CCTCATAACATTTGTTGATGATCATTT 57.188 29.630 10.14 0.00 38.90 2.32
4519 12422 9.806203 TCATAACATTTGTTGATGATCATTTCC 57.194 29.630 10.14 0.00 38.90 3.13
4520 12423 9.589111 CATAACATTTGTTGATGATCATTTCCA 57.411 29.630 10.14 0.14 38.90 3.53
4521 12424 7.894376 AACATTTGTTGATGATCATTTCCAC 57.106 32.000 10.14 1.70 36.80 4.02
4522 12425 6.094719 ACATTTGTTGATGATCATTTCCACG 58.905 36.000 10.14 0.00 0.00 4.94
4523 12426 5.956068 TTTGTTGATGATCATTTCCACGA 57.044 34.783 10.14 0.00 0.00 4.35
4524 12427 5.956068 TTGTTGATGATCATTTCCACGAA 57.044 34.783 10.14 0.00 0.00 3.85
4525 12428 5.550232 TGTTGATGATCATTTCCACGAAG 57.450 39.130 10.14 0.00 0.00 3.79
4527 12430 5.473162 TGTTGATGATCATTTCCACGAAGTT 59.527 36.000 10.14 0.00 41.61 2.66
4528 12431 6.016360 TGTTGATGATCATTTCCACGAAGTTT 60.016 34.615 10.14 0.00 41.61 2.66
4529 12432 6.182039 TGATGATCATTTCCACGAAGTTTC 57.818 37.500 10.14 0.00 41.61 2.78
4530 12433 5.704978 TGATGATCATTTCCACGAAGTTTCA 59.295 36.000 10.14 0.00 41.61 2.69
4531 12434 5.611796 TGATCATTTCCACGAAGTTTCAG 57.388 39.130 0.00 0.00 41.61 3.02
4532 12435 5.063204 TGATCATTTCCACGAAGTTTCAGT 58.937 37.500 0.00 0.00 41.61 3.41
4533 12436 5.530915 TGATCATTTCCACGAAGTTTCAGTT 59.469 36.000 0.00 0.00 41.61 3.16
4534 12437 5.828299 TCATTTCCACGAAGTTTCAGTTT 57.172 34.783 0.00 0.00 41.61 2.66
4535 12438 6.202516 TCATTTCCACGAAGTTTCAGTTTT 57.797 33.333 0.00 0.00 41.61 2.43
4536 12439 6.626302 TCATTTCCACGAAGTTTCAGTTTTT 58.374 32.000 0.00 0.00 41.61 1.94
4568 12471 8.592105 ATGTTTTGATATGTTTTCTTGTGTGG 57.408 30.769 0.00 0.00 0.00 4.17
4569 12472 6.983307 TGTTTTGATATGTTTTCTTGTGTGGG 59.017 34.615 0.00 0.00 0.00 4.61
4570 12473 6.723298 TTTGATATGTTTTCTTGTGTGGGT 57.277 33.333 0.00 0.00 0.00 4.51
4571 12474 5.703978 TGATATGTTTTCTTGTGTGGGTG 57.296 39.130 0.00 0.00 0.00 4.61
4572 12475 2.888834 ATGTTTTCTTGTGTGGGTGC 57.111 45.000 0.00 0.00 0.00 5.01
4573 12476 1.550327 TGTTTTCTTGTGTGGGTGCA 58.450 45.000 0.00 0.00 0.00 4.57
4574 12477 1.203523 TGTTTTCTTGTGTGGGTGCAC 59.796 47.619 8.80 8.80 39.65 4.57
4575 12478 0.820871 TTTTCTTGTGTGGGTGCACC 59.179 50.000 28.57 28.57 38.52 5.01
4576 12479 1.380403 TTTCTTGTGTGGGTGCACCG 61.380 55.000 29.08 13.78 44.64 4.94
4577 12480 2.515991 CTTGTGTGGGTGCACCGT 60.516 61.111 29.08 0.00 44.64 4.83
4578 12481 2.826287 TTGTGTGGGTGCACCGTG 60.826 61.111 29.08 0.00 44.64 4.94
4579 12482 4.866224 TGTGTGGGTGCACCGTGG 62.866 66.667 29.08 0.00 44.64 4.94
4590 12493 3.548484 ACCGTGGGTGCACCGTAA 61.548 61.111 29.08 14.81 44.64 3.18
4591 12494 2.740826 CCGTGGGTGCACCGTAAG 60.741 66.667 29.08 20.92 44.64 2.34
4592 12495 2.029964 CGTGGGTGCACCGTAAGT 59.970 61.111 29.08 0.00 44.64 2.24
4601 12504 4.468007 ACCGTAAGTGGGTGCAAC 57.532 55.556 0.00 0.00 36.14 4.17
4641 12547 8.340618 TGTTTCTTATGATTCTTTCTTCAGGG 57.659 34.615 0.00 0.00 0.00 4.45
4732 12638 3.064207 TCAAGAACGAATGGAAGAACGG 58.936 45.455 0.00 0.00 0.00 4.44
4877 12783 1.004560 CGAGAGCTGCAACAAGGGA 60.005 57.895 1.02 0.00 0.00 4.20
4898 12804 3.637273 GAGAACCACTGCCCGGGT 61.637 66.667 24.63 0.00 39.65 5.28
5288 15501 4.142038 AGGTACCAATCAAACAAGACCAC 58.858 43.478 15.94 0.00 0.00 4.16
5296 15510 9.342308 ACCAATCAAACAAGACCACATATATAG 57.658 33.333 0.00 0.00 0.00 1.31
5326 15540 6.434340 TCAGTCTTGCTAAATCTCAGTGACTA 59.566 38.462 0.00 0.00 31.63 2.59
5336 15550 2.563179 TCTCAGTGACTAAGGCTTGGTC 59.437 50.000 30.10 30.10 41.05 4.02
5365 15579 5.594317 TCGTGAGATCTTACATTGAGATCCA 59.406 40.000 16.95 6.05 46.88 3.41
5438 15652 6.843208 TGTCACTTGATAAGTCTAAGTCGAG 58.157 40.000 0.00 0.00 40.46 4.04
5449 15663 4.223477 AGTCTAAGTCGAGTGAGACCTAGT 59.777 45.833 27.58 11.64 41.83 2.57
5456 15670 4.013702 TGAGACCTAGTCGCACCC 57.986 61.111 0.00 0.00 37.43 4.61
5467 15681 4.511826 CCTAGTCGCACCCATAGATTTTTC 59.488 45.833 0.00 0.00 0.00 2.29
5480 15694 2.834549 AGATTTTTCTCTCTCTCCGGCA 59.165 45.455 0.00 0.00 0.00 5.69
5498 15712 4.183865 CGGCAGAGATCAAAACATGAGTA 58.816 43.478 0.00 0.00 42.53 2.59
5500 15714 5.295292 CGGCAGAGATCAAAACATGAGTATT 59.705 40.000 0.00 0.00 42.53 1.89
5588 15890 3.818210 TCATAAACACGGTGTCTGCAAAT 59.182 39.130 15.09 0.00 0.00 2.32
5607 15909 0.772124 TATTCCCATGGCCCCTCTCC 60.772 60.000 6.09 0.00 0.00 3.71
5720 16022 1.079543 CTCCGACCTCACAAGCCTG 60.080 63.158 0.00 0.00 0.00 4.85
5735 16040 4.098654 ACAAGCCTGGCTAGCTATATATCG 59.901 45.833 23.69 0.98 40.49 2.92
5743 16053 5.104485 TGGCTAGCTATATATCGTCTCCAGA 60.104 44.000 15.72 0.00 0.00 3.86
5752 16062 2.795175 TCGTCTCCAGACTCACAAAC 57.205 50.000 5.21 0.00 42.66 2.93
5757 16127 4.499183 GTCTCCAGACTCACAAACCTATG 58.501 47.826 0.00 0.00 41.65 2.23
5758 16128 4.021016 GTCTCCAGACTCACAAACCTATGT 60.021 45.833 0.00 0.00 41.65 2.29
5790 16179 1.771073 CGTGTGGCAGCGAACAAGAA 61.771 55.000 5.59 0.00 0.00 2.52
5845 16234 1.525923 CCAGGAGATGCTGGACCTG 59.474 63.158 14.73 0.00 46.37 4.00
6010 16399 4.719369 GTCGCCGCCGAGTGACTT 62.719 66.667 10.62 0.00 45.38 3.01
6124 16519 2.096819 GGTGCTCAAACTTGTTTCGTCA 59.903 45.455 0.00 0.00 0.00 4.35
6287 16683 2.747855 GGCTTGGAACGCTGGGAG 60.748 66.667 0.00 0.00 0.00 4.30
6517 16914 6.894767 CCTTAAAGGACCGCAGTTAGTGCT 62.895 50.000 10.48 0.00 44.06 4.40
6769 17166 9.933723 AGTATAACTTTGTACTAAATCAACCGT 57.066 29.630 0.00 0.00 34.01 4.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 50 5.966742 ATCTTCTTTAACAAGGGCTGTTC 57.033 39.130 0.00 0.00 45.50 3.18
50 55 7.051000 AGTGATCTATCTTCTTTAACAAGGGC 58.949 38.462 0.00 0.00 0.00 5.19
57 62 9.658799 CTGGTCAAAGTGATCTATCTTCTTTAA 57.341 33.333 0.00 0.00 33.82 1.52
70 75 3.057033 GCAATGCTTCTGGTCAAAGTGAT 60.057 43.478 0.00 0.00 0.00 3.06
71 76 2.294233 GCAATGCTTCTGGTCAAAGTGA 59.706 45.455 0.00 0.00 0.00 3.41
73 78 2.309613 TGCAATGCTTCTGGTCAAAGT 58.690 42.857 6.82 0.00 0.00 2.66
120 139 6.996180 AGGCCAGTACAAATAGAGCTAATA 57.004 37.500 5.01 0.00 0.00 0.98
129 148 3.965379 TCGTCAAGGCCAGTACAAATA 57.035 42.857 5.01 0.00 0.00 1.40
130 149 2.812011 GTTCGTCAAGGCCAGTACAAAT 59.188 45.455 5.01 0.00 0.00 2.32
132 151 1.139256 TGTTCGTCAAGGCCAGTACAA 59.861 47.619 5.01 0.00 0.00 2.41
159 178 8.687824 AAACTCTTACTTTTTGTGTGTTGATG 57.312 30.769 0.00 0.00 0.00 3.07
169 188 6.310224 CCACCACACAAAACTCTTACTTTTTG 59.690 38.462 5.47 5.47 44.70 2.44
174 193 4.497291 TCCACCACACAAAACTCTTACT 57.503 40.909 0.00 0.00 0.00 2.24
178 213 6.976934 ATAATTTCCACCACACAAAACTCT 57.023 33.333 0.00 0.00 0.00 3.24
191 226 9.063615 AGGATCGTACCAATTTATAATTTCCAC 57.936 33.333 0.00 0.00 0.00 4.02
192 227 9.635404 AAGGATCGTACCAATTTATAATTTCCA 57.365 29.630 0.00 0.00 0.00 3.53
248 283 9.646522 AGCCTGTTGTGATTCCTAAATATATTT 57.353 29.630 14.86 14.86 0.00 1.40
249 284 9.646522 AAGCCTGTTGTGATTCCTAAATATATT 57.353 29.630 0.00 0.00 0.00 1.28
250 285 9.289782 GAAGCCTGTTGTGATTCCTAAATATAT 57.710 33.333 0.00 0.00 0.00 0.86
252 287 7.349598 AGAAGCCTGTTGTGATTCCTAAATAT 58.650 34.615 0.00 0.00 0.00 1.28
254 289 5.574188 AGAAGCCTGTTGTGATTCCTAAAT 58.426 37.500 0.00 0.00 0.00 1.40
272 307 6.538381 TCAAAAACCCTTGAATCAAAAGAAGC 59.462 34.615 0.00 0.00 32.39 3.86
286 321 8.541899 TTTTAACTACCAGATCAAAAACCCTT 57.458 30.769 0.00 0.00 0.00 3.95
434 473 0.036765 AGTCTTGTTAATGCGCCCGA 60.037 50.000 4.18 0.00 0.00 5.14
437 476 3.126858 TGATGAAGTCTTGTTAATGCGCC 59.873 43.478 4.18 0.00 0.00 6.53
460 499 3.596214 ACAAGCCGACGTATCTTCAAAT 58.404 40.909 0.00 0.00 0.00 2.32
464 503 2.853003 GAGAACAAGCCGACGTATCTTC 59.147 50.000 0.00 0.00 0.00 2.87
471 510 0.794981 CGAGAGAGAACAAGCCGACG 60.795 60.000 0.00 0.00 0.00 5.12
475 514 1.273886 ACCTTCGAGAGAGAACAAGCC 59.726 52.381 0.00 0.00 43.69 4.35
481 520 1.815613 CTGAGCACCTTCGAGAGAGAA 59.184 52.381 0.00 0.00 43.69 2.87
508 547 1.202371 ACGTGTGCACATATACCCGAG 60.202 52.381 24.69 8.45 0.00 4.63
510 883 1.647346 AACGTGTGCACATATACCCG 58.353 50.000 24.69 21.79 0.00 5.28
512 885 3.682858 ACTCAAACGTGTGCACATATACC 59.317 43.478 24.69 8.66 0.00 2.73
514 887 4.559643 CGTACTCAAACGTGTGCACATATA 59.440 41.667 24.69 5.05 38.07 0.86
548 921 0.667487 AACGATCACGCACACTGAGG 60.667 55.000 0.00 0.00 43.96 3.86
650 1032 0.397254 TTCCCCTCTCCGTCTCATCC 60.397 60.000 0.00 0.00 0.00 3.51
651 1033 1.036707 CTTCCCCTCTCCGTCTCATC 58.963 60.000 0.00 0.00 0.00 2.92
652 1034 0.631753 TCTTCCCCTCTCCGTCTCAT 59.368 55.000 0.00 0.00 0.00 2.90
715 1105 0.323999 TGCTCTCCGCCTTACCTACA 60.324 55.000 0.00 0.00 38.05 2.74
717 1107 1.112113 CTTGCTCTCCGCCTTACCTA 58.888 55.000 0.00 0.00 38.05 3.08
719 1109 0.741221 CACTTGCTCTCCGCCTTACC 60.741 60.000 0.00 0.00 38.05 2.85
721 1111 0.685097 AACACTTGCTCTCCGCCTTA 59.315 50.000 0.00 0.00 38.05 2.69
722 1112 0.179018 AAACACTTGCTCTCCGCCTT 60.179 50.000 0.00 0.00 38.05 4.35
757 1165 1.745115 CCCGTCGGTGTGCATGAAT 60.745 57.895 11.06 0.00 0.00 2.57
758 1166 2.358125 CCCGTCGGTGTGCATGAA 60.358 61.111 11.06 0.00 0.00 2.57
759 1167 3.307108 TCCCGTCGGTGTGCATGA 61.307 61.111 11.06 0.00 0.00 3.07
760 1168 3.118454 GTCCCGTCGGTGTGCATG 61.118 66.667 11.06 0.00 0.00 4.06
761 1169 3.589654 CTGTCCCGTCGGTGTGCAT 62.590 63.158 11.06 0.00 0.00 3.96
948 1400 1.739067 ATTAGTTCTTGAGGCGTGGC 58.261 50.000 0.00 0.00 0.00 5.01
1153 1670 3.390521 TCCAGATGCGGAGGCGTT 61.391 61.111 0.00 0.00 44.10 4.84
1368 2545 5.698545 GCTTTATAAGAGGGCTACATCACTG 59.301 44.000 0.00 0.00 0.00 3.66
1387 2564 3.153919 GGTTGTCACAGGATTGGCTTTA 58.846 45.455 0.00 0.00 0.00 1.85
1401 2579 1.227527 CTGTGTCTGCCGGTTGTCA 60.228 57.895 1.90 0.00 0.00 3.58
1424 2604 3.260475 TGCTGGTATCATAGTTGCGTT 57.740 42.857 0.00 0.00 0.00 4.84
1429 2609 5.102953 TGCTCTTTGCTGGTATCATAGTT 57.897 39.130 0.00 0.00 43.37 2.24
1436 2621 1.453155 CCGTTGCTCTTTGCTGGTAT 58.547 50.000 0.00 0.00 43.37 2.73
1452 2641 0.683412 GGGTGTGTTAGTTCTCCCGT 59.317 55.000 0.00 0.00 0.00 5.28
1512 2704 1.907739 CGCCATTCTCCCTCTTGGA 59.092 57.895 0.00 0.00 42.41 3.53
1562 2766 2.154074 AGGGCTCCGGGTGAAGTTT 61.154 57.895 0.00 0.00 0.00 2.66
1564 2768 3.322466 CAGGGCTCCGGGTGAAGT 61.322 66.667 0.00 0.00 0.00 3.01
1758 3022 3.041940 CAGGTGTTGCGACGGGTC 61.042 66.667 0.00 0.00 0.00 4.46
1775 3039 1.878775 GAGCTGTGTGGGCAATGAC 59.121 57.895 0.00 0.00 0.00 3.06
1880 3148 1.674611 CGGTGCACGCTTTCTCGTAG 61.675 60.000 11.45 0.00 41.21 3.51
1881 3149 1.731613 CGGTGCACGCTTTCTCGTA 60.732 57.895 11.45 0.00 41.21 3.43
1906 3175 0.599558 CATGGTTGAGTGCCTTGTGG 59.400 55.000 0.00 0.00 0.00 4.17
1912 3181 0.618458 TCCTACCATGGTTGAGTGCC 59.382 55.000 25.38 0.00 0.00 5.01
1955 3237 1.407936 GAGACTGATGCTGGGCTAGA 58.592 55.000 0.43 0.00 0.00 2.43
1963 3245 1.102154 CAGACTCGGAGACTGATGCT 58.898 55.000 26.27 0.00 39.74 3.79
2048 3405 1.072678 AGTCTCGGAGTCGTGTCCA 59.927 57.895 4.69 0.00 36.23 4.02
2094 3452 3.649277 CTCGTCTGGCCAAGGGTCG 62.649 68.421 7.01 5.26 0.00 4.79
2095 3453 2.266055 CTCGTCTGGCCAAGGGTC 59.734 66.667 7.01 0.00 0.00 4.46
2108 3466 2.355126 CAGTGCGTGTGAGCTCGT 60.355 61.111 9.64 0.00 38.13 4.18
2217 3605 1.418264 GGATAGGAGAGGTTGGGCTTC 59.582 57.143 0.00 0.00 0.00 3.86
2258 3646 4.096003 TAGGCCACTGCTTCCGGC 62.096 66.667 5.01 0.00 45.47 6.13
2342 3737 2.544903 GGGAAACAAACCACATTCCACG 60.545 50.000 5.82 0.00 42.50 4.94
2343 3738 2.698274 AGGGAAACAAACCACATTCCAC 59.302 45.455 5.82 0.00 42.50 4.02
2344 3739 3.039252 AGGGAAACAAACCACATTCCA 57.961 42.857 5.82 0.00 42.50 3.53
2346 3741 6.590234 AATCTAGGGAAACAAACCACATTC 57.410 37.500 0.00 0.00 0.00 2.67
2348 3743 5.480422 GGAAATCTAGGGAAACAAACCACAT 59.520 40.000 0.00 0.00 0.00 3.21
2349 3744 4.830600 GGAAATCTAGGGAAACAAACCACA 59.169 41.667 0.00 0.00 0.00 4.17
2350 3745 4.830600 TGGAAATCTAGGGAAACAAACCAC 59.169 41.667 0.00 0.00 0.00 4.16
2351 3746 4.830600 GTGGAAATCTAGGGAAACAAACCA 59.169 41.667 0.00 0.00 0.00 3.67
2372 3772 2.796735 GCAACCCAAAAACCAGTACGTG 60.797 50.000 0.00 0.00 0.00 4.49
2402 3802 8.702163 ATTAAGGCCGAATTTCACAAAAATAG 57.298 30.769 0.00 0.00 0.00 1.73
2488 4070 8.985315 ATTGGACACATGATTATTCACACTAT 57.015 30.769 0.00 0.00 33.85 2.12
2489 4071 9.325198 GTATTGGACACATGATTATTCACACTA 57.675 33.333 0.00 0.00 33.85 2.74
2490 4072 8.049117 AGTATTGGACACATGATTATTCACACT 58.951 33.333 0.00 0.00 33.85 3.55
2491 4073 8.213518 AGTATTGGACACATGATTATTCACAC 57.786 34.615 0.00 0.00 33.85 3.82
2492 4074 9.325198 GTAGTATTGGACACATGATTATTCACA 57.675 33.333 0.00 0.00 33.85 3.58
2493 4075 9.325198 TGTAGTATTGGACACATGATTATTCAC 57.675 33.333 0.00 0.00 33.85 3.18
2494 4076 9.898152 TTGTAGTATTGGACACATGATTATTCA 57.102 29.630 0.00 0.00 36.00 2.57
2496 4078 9.120538 GGTTGTAGTATTGGACACATGATTATT 57.879 33.333 0.00 0.00 0.00 1.40
2497 4079 7.441157 CGGTTGTAGTATTGGACACATGATTAT 59.559 37.037 0.00 0.00 0.00 1.28
2498 4080 6.759356 CGGTTGTAGTATTGGACACATGATTA 59.241 38.462 0.00 0.00 0.00 1.75
2499 4081 5.584649 CGGTTGTAGTATTGGACACATGATT 59.415 40.000 0.00 0.00 0.00 2.57
2500 4082 5.116180 CGGTTGTAGTATTGGACACATGAT 58.884 41.667 0.00 0.00 0.00 2.45
2501 4083 4.020928 ACGGTTGTAGTATTGGACACATGA 60.021 41.667 0.00 0.00 0.00 3.07
2502 4084 4.092821 CACGGTTGTAGTATTGGACACATG 59.907 45.833 0.00 0.00 0.00 3.21
2512 4094 6.278363 GGTATTGATGTCACGGTTGTAGTAT 58.722 40.000 0.00 0.00 0.00 2.12
2545 4127 3.700038 TCGCCTAAAAACTCCAAAACCAA 59.300 39.130 0.00 0.00 0.00 3.67
2546 4128 3.067040 GTCGCCTAAAAACTCCAAAACCA 59.933 43.478 0.00 0.00 0.00 3.67
2547 4129 3.635331 GTCGCCTAAAAACTCCAAAACC 58.365 45.455 0.00 0.00 0.00 3.27
2575 4157 3.613737 TGTATGCGGCTTTTACGACTAAC 59.386 43.478 0.00 0.00 0.00 2.34
2581 4166 2.350192 TCACATGTATGCGGCTTTTACG 59.650 45.455 0.00 0.00 0.00 3.18
2639 4224 5.238583 GTGTAGAGGCAAATGAACAGTACT 58.761 41.667 0.00 0.00 0.00 2.73
2645 4230 1.201921 CGCGTGTAGAGGCAAATGAAC 60.202 52.381 0.00 0.00 32.98 3.18
2659 4244 0.103572 AGTAAAGGTCACACGCGTGT 59.896 50.000 37.52 37.52 46.17 4.49
2660 4245 2.054687 TAGTAAAGGTCACACGCGTG 57.945 50.000 35.99 35.99 45.08 5.34
2662 4247 2.601763 GGAATAGTAAAGGTCACACGCG 59.398 50.000 3.53 3.53 0.00 6.01
2687 4272 6.191657 TGAGCCACTTGATTCATACCATAT 57.808 37.500 0.00 0.00 0.00 1.78
2689 4274 4.508551 TGAGCCACTTGATTCATACCAT 57.491 40.909 0.00 0.00 0.00 3.55
2734 4319 4.818534 TCAATGAAGTCACTGAAACAGC 57.181 40.909 0.00 0.00 34.37 4.40
2832 5567 9.391006 ACGTTAATGACAAATGTATCCACTATT 57.609 29.630 0.58 0.00 0.00 1.73
2834 5569 7.221259 CGACGTTAATGACAAATGTATCCACTA 59.779 37.037 0.58 0.00 0.00 2.74
2839 5574 6.892951 GTGTCGACGTTAATGACAAATGTATC 59.107 38.462 11.62 0.20 43.58 2.24
2841 5576 5.921976 AGTGTCGACGTTAATGACAAATGTA 59.078 36.000 11.62 0.00 43.58 2.29
2849 5584 2.751259 AGGCTAGTGTCGACGTTAATGA 59.249 45.455 11.62 0.00 0.00 2.57
2850 5585 3.146618 AGGCTAGTGTCGACGTTAATG 57.853 47.619 11.62 0.12 0.00 1.90
2865 5993 6.976934 AGATTCCAAAACTGAAAAAGGCTA 57.023 33.333 0.00 0.00 0.00 3.93
2876 6004 5.147767 AGGTTGCCTAAAGATTCCAAAACT 58.852 37.500 0.00 0.00 28.47 2.66
2910 6041 7.938490 TGACACATCACATGTATATGCCTTTAT 59.062 33.333 16.46 0.00 42.70 1.40
3009 7758 6.467677 AGCTACTTGATTCATACAACACACT 58.532 36.000 0.00 0.00 0.00 3.55
3010 7759 6.368791 TGAGCTACTTGATTCATACAACACAC 59.631 38.462 0.00 0.00 0.00 3.82
3116 8657 0.394938 TCGCTACAACCTCTTTGCCA 59.605 50.000 0.00 0.00 39.01 4.92
3367 8940 9.627123 ACATGTTGGTAGCATTACTTTATATGT 57.373 29.630 0.00 0.00 0.00 2.29
3521 9098 4.044065 TCCTAAAACCATCCATCAACCACT 59.956 41.667 0.00 0.00 0.00 4.00
3606 9187 9.944376 ATCACATAATTCAGCCTATTATTACGT 57.056 29.630 0.00 0.00 0.00 3.57
3696 10407 6.783162 TGACCAATTTTTGTTTTGCTGATTG 58.217 32.000 0.00 0.00 0.00 2.67
3732 10446 4.875536 GGTTCAAAAGCCAAACAATCAGTT 59.124 37.500 0.00 0.00 43.89 3.16
3769 10483 1.567208 AACACCACTCACACCCACCA 61.567 55.000 0.00 0.00 0.00 4.17
3860 10582 4.680172 GCTCACTGATGCAACTAGTCTCAT 60.680 45.833 8.92 8.92 0.00 2.90
3903 10629 9.696917 AAATCTCACAAGTAAATCATGGTTTTC 57.303 29.630 9.68 4.48 0.00 2.29
4152 11371 7.309744 CCAAAATATTGAAGTTCTAGGTTGCCA 60.310 37.037 4.17 0.00 38.94 4.92
4194 12096 8.237267 ACCATTCTCTAAAAAGAAACGCTATTG 58.763 33.333 0.00 0.00 38.69 1.90
4212 12115 4.020128 AGTGGGTGTAGAAGAACCATTCTC 60.020 45.833 0.00 0.00 39.61 2.87
4213 12116 3.910627 AGTGGGTGTAGAAGAACCATTCT 59.089 43.478 0.00 0.00 43.15 2.40
4214 12117 4.020128 AGAGTGGGTGTAGAAGAACCATTC 60.020 45.833 0.00 0.00 38.27 2.67
4215 12118 3.910627 AGAGTGGGTGTAGAAGAACCATT 59.089 43.478 0.00 0.00 38.27 3.16
4216 12119 3.515901 GAGAGTGGGTGTAGAAGAACCAT 59.484 47.826 0.00 0.00 38.27 3.55
4217 12120 2.897969 GAGAGTGGGTGTAGAAGAACCA 59.102 50.000 0.00 0.00 38.27 3.67
4218 12121 2.094649 CGAGAGTGGGTGTAGAAGAACC 60.095 54.545 0.00 0.00 35.59 3.62
4219 12122 2.094649 CCGAGAGTGGGTGTAGAAGAAC 60.095 54.545 0.00 0.00 0.00 3.01
4220 12123 2.168496 CCGAGAGTGGGTGTAGAAGAA 58.832 52.381 0.00 0.00 0.00 2.52
4221 12124 1.075050 ACCGAGAGTGGGTGTAGAAGA 59.925 52.381 0.00 0.00 36.14 2.87
4222 12125 1.546961 ACCGAGAGTGGGTGTAGAAG 58.453 55.000 0.00 0.00 36.14 2.85
4223 12126 3.759865 ACCGAGAGTGGGTGTAGAA 57.240 52.632 0.00 0.00 36.14 2.10
4233 12136 3.991051 CGTGGGTGCACCGAGAGT 61.991 66.667 29.08 0.00 44.64 3.24
4239 12142 2.010582 TTTTCTTGCGTGGGTGCACC 62.011 55.000 28.57 28.57 46.25 5.01
4240 12143 0.869880 GTTTTCTTGCGTGGGTGCAC 60.870 55.000 8.80 8.80 46.25 4.57
4241 12144 1.315981 TGTTTTCTTGCGTGGGTGCA 61.316 50.000 0.00 0.00 44.61 4.57
4242 12145 0.031994 ATGTTTTCTTGCGTGGGTGC 59.968 50.000 0.00 0.00 0.00 5.01
4243 12146 3.190327 TGATATGTTTTCTTGCGTGGGTG 59.810 43.478 0.00 0.00 0.00 4.61
4244 12147 3.417101 TGATATGTTTTCTTGCGTGGGT 58.583 40.909 0.00 0.00 0.00 4.51
4245 12148 4.433186 TTGATATGTTTTCTTGCGTGGG 57.567 40.909 0.00 0.00 0.00 4.61
4246 12149 5.689514 TGTTTTGATATGTTTTCTTGCGTGG 59.310 36.000 0.00 0.00 0.00 4.94
4247 12150 6.746104 TGTTTTGATATGTTTTCTTGCGTG 57.254 33.333 0.00 0.00 0.00 5.34
4248 12151 7.945033 AATGTTTTGATATGTTTTCTTGCGT 57.055 28.000 0.00 0.00 0.00 5.24
4249 12152 7.679634 CGAAATGTTTTGATATGTTTTCTTGCG 59.320 33.333 0.00 0.00 0.00 4.85
4250 12153 8.698854 TCGAAATGTTTTGATATGTTTTCTTGC 58.301 29.630 0.00 0.00 0.00 4.01
4277 12180 8.925161 TCATTTTCACGAAGTTTCAGATTTTT 57.075 26.923 0.00 0.00 41.61 1.94
4278 12181 9.185192 GATCATTTTCACGAAGTTTCAGATTTT 57.815 29.630 0.00 0.00 41.61 1.82
4279 12182 8.352201 TGATCATTTTCACGAAGTTTCAGATTT 58.648 29.630 0.00 0.00 41.61 2.17
4280 12183 7.874940 TGATCATTTTCACGAAGTTTCAGATT 58.125 30.769 0.00 0.00 41.61 2.40
4281 12184 7.439157 TGATCATTTTCACGAAGTTTCAGAT 57.561 32.000 0.00 0.00 41.61 2.90
4282 12185 6.859420 TGATCATTTTCACGAAGTTTCAGA 57.141 33.333 0.00 0.00 41.61 3.27
4283 12186 7.300320 TGATGATCATTTTCACGAAGTTTCAG 58.700 34.615 10.14 0.00 41.61 3.02
4284 12187 7.200778 TGATGATCATTTTCACGAAGTTTCA 57.799 32.000 10.14 0.00 41.61 2.69
4285 12188 7.591057 TGTTGATGATCATTTTCACGAAGTTTC 59.409 33.333 10.14 0.00 41.61 2.78
4286 12189 7.424803 TGTTGATGATCATTTTCACGAAGTTT 58.575 30.769 10.14 0.00 41.61 2.66
4287 12190 6.969366 TGTTGATGATCATTTTCACGAAGTT 58.031 32.000 10.14 0.00 41.61 2.66
4289 12192 7.856492 TTTGTTGATGATCATTTTCACGAAG 57.144 32.000 10.14 0.00 0.00 3.79
4290 12193 7.866898 ACATTTGTTGATGATCATTTTCACGAA 59.133 29.630 10.14 10.27 0.00 3.85
4291 12194 7.369607 ACATTTGTTGATGATCATTTTCACGA 58.630 30.769 10.14 2.01 0.00 4.35
4292 12195 7.571089 ACATTTGTTGATGATCATTTTCACG 57.429 32.000 10.14 3.97 0.00 4.35
4296 12199 9.386010 CCCATAACATTTGTTGATGATCATTTT 57.614 29.630 10.14 0.00 38.90 1.82
4297 12200 8.760735 TCCCATAACATTTGTTGATGATCATTT 58.239 29.630 10.14 0.00 38.90 2.32
4298 12201 8.308851 TCCCATAACATTTGTTGATGATCATT 57.691 30.769 10.14 0.00 38.90 2.57
4299 12202 7.470981 GCTCCCATAACATTTGTTGATGATCAT 60.471 37.037 8.25 8.25 38.90 2.45
4300 12203 6.183360 GCTCCCATAACATTTGTTGATGATCA 60.183 38.462 0.00 0.00 38.90 2.92
4301 12204 6.040166 AGCTCCCATAACATTTGTTGATGATC 59.960 38.462 6.21 0.00 38.90 2.92
4302 12205 5.895534 AGCTCCCATAACATTTGTTGATGAT 59.104 36.000 6.21 0.00 38.90 2.45
4303 12206 5.263599 AGCTCCCATAACATTTGTTGATGA 58.736 37.500 6.21 0.00 38.90 2.92
4304 12207 5.587388 AGCTCCCATAACATTTGTTGATG 57.413 39.130 6.21 6.19 38.90 3.07
4305 12208 5.625197 GCAAGCTCCCATAACATTTGTTGAT 60.625 40.000 6.21 0.00 38.90 2.57
4306 12209 4.321899 GCAAGCTCCCATAACATTTGTTGA 60.322 41.667 6.21 0.00 38.90 3.18
4307 12210 3.928375 GCAAGCTCCCATAACATTTGTTG 59.072 43.478 6.21 0.00 38.90 3.33
4308 12211 3.577848 TGCAAGCTCCCATAACATTTGTT 59.422 39.130 1.08 1.08 41.73 2.83
4309 12212 3.164268 TGCAAGCTCCCATAACATTTGT 58.836 40.909 0.00 0.00 0.00 2.83
4310 12213 3.872511 TGCAAGCTCCCATAACATTTG 57.127 42.857 0.00 0.00 0.00 2.32
4311 12214 4.888326 TTTGCAAGCTCCCATAACATTT 57.112 36.364 0.00 0.00 0.00 2.32
4312 12215 4.888326 TTTTGCAAGCTCCCATAACATT 57.112 36.364 0.00 0.00 0.00 2.71
4313 12216 5.425196 AATTTTGCAAGCTCCCATAACAT 57.575 34.783 0.00 0.00 0.00 2.71
4314 12217 4.888326 AATTTTGCAAGCTCCCATAACA 57.112 36.364 0.00 0.00 0.00 2.41
4315 12218 4.392754 CCAAATTTTGCAAGCTCCCATAAC 59.607 41.667 0.00 0.00 0.00 1.89
4316 12219 4.041444 ACCAAATTTTGCAAGCTCCCATAA 59.959 37.500 0.00 0.00 0.00 1.90
4317 12220 3.582208 ACCAAATTTTGCAAGCTCCCATA 59.418 39.130 0.00 0.00 0.00 2.74
4318 12221 2.372837 ACCAAATTTTGCAAGCTCCCAT 59.627 40.909 0.00 0.00 0.00 4.00
4319 12222 1.767681 ACCAAATTTTGCAAGCTCCCA 59.232 42.857 0.00 0.00 0.00 4.37
4320 12223 2.145536 CACCAAATTTTGCAAGCTCCC 58.854 47.619 0.00 0.00 0.00 4.30
4321 12224 2.145536 CCACCAAATTTTGCAAGCTCC 58.854 47.619 0.00 0.00 0.00 4.70
4322 12225 2.802247 GACCACCAAATTTTGCAAGCTC 59.198 45.455 0.00 0.00 0.00 4.09
4323 12226 2.170187 TGACCACCAAATTTTGCAAGCT 59.830 40.909 0.00 0.00 0.00 3.74
4324 12227 2.559440 TGACCACCAAATTTTGCAAGC 58.441 42.857 0.00 0.00 0.00 4.01
4335 12238 6.307776 TCCTTGTATGTTATTTGACCACCAA 58.692 36.000 0.00 0.00 0.00 3.67
4336 12239 5.882040 TCCTTGTATGTTATTTGACCACCA 58.118 37.500 0.00 0.00 0.00 4.17
4337 12240 5.163652 GCTCCTTGTATGTTATTTGACCACC 60.164 44.000 0.00 0.00 0.00 4.61
4338 12241 5.648092 AGCTCCTTGTATGTTATTTGACCAC 59.352 40.000 0.00 0.00 0.00 4.16
4339 12242 5.815581 AGCTCCTTGTATGTTATTTGACCA 58.184 37.500 0.00 0.00 0.00 4.02
4340 12243 6.116126 AGAGCTCCTTGTATGTTATTTGACC 58.884 40.000 10.93 0.00 0.00 4.02
4341 12244 7.044798 AGAGAGCTCCTTGTATGTTATTTGAC 58.955 38.462 10.93 0.00 0.00 3.18
4342 12245 7.187824 AGAGAGCTCCTTGTATGTTATTTGA 57.812 36.000 10.93 0.00 0.00 2.69
4343 12246 7.981789 TGTAGAGAGCTCCTTGTATGTTATTTG 59.018 37.037 10.93 0.00 0.00 2.32
4344 12247 8.079211 TGTAGAGAGCTCCTTGTATGTTATTT 57.921 34.615 10.93 0.00 0.00 1.40
4345 12248 7.661536 TGTAGAGAGCTCCTTGTATGTTATT 57.338 36.000 10.93 0.00 0.00 1.40
4346 12249 7.661536 TTGTAGAGAGCTCCTTGTATGTTAT 57.338 36.000 10.93 0.00 0.00 1.89
4347 12250 7.476540 TTTGTAGAGAGCTCCTTGTATGTTA 57.523 36.000 10.93 0.00 0.00 2.41
4348 12251 6.360370 TTTGTAGAGAGCTCCTTGTATGTT 57.640 37.500 10.93 0.00 0.00 2.71
4349 12252 6.360370 TTTTGTAGAGAGCTCCTTGTATGT 57.640 37.500 10.93 0.00 0.00 2.29
4381 12284 9.825972 CGTACATTTTGACTAATTTTCAGTGAT 57.174 29.630 0.00 0.00 0.00 3.06
4382 12285 8.832521 ACGTACATTTTGACTAATTTTCAGTGA 58.167 29.630 0.00 0.00 0.00 3.41
4383 12286 8.891928 CACGTACATTTTGACTAATTTTCAGTG 58.108 33.333 0.00 0.00 0.00 3.66
4384 12287 7.589954 GCACGTACATTTTGACTAATTTTCAGT 59.410 33.333 0.00 0.00 0.00 3.41
4385 12288 7.589587 TGCACGTACATTTTGACTAATTTTCAG 59.410 33.333 0.00 0.00 0.00 3.02
4386 12289 7.377397 GTGCACGTACATTTTGACTAATTTTCA 59.623 33.333 0.00 0.00 0.00 2.69
4387 12290 7.589954 AGTGCACGTACATTTTGACTAATTTTC 59.410 33.333 12.01 0.00 0.00 2.29
4388 12291 7.378461 CAGTGCACGTACATTTTGACTAATTTT 59.622 33.333 12.01 0.00 0.00 1.82
4389 12292 6.855914 CAGTGCACGTACATTTTGACTAATTT 59.144 34.615 12.01 0.00 0.00 1.82
4390 12293 6.017440 ACAGTGCACGTACATTTTGACTAATT 60.017 34.615 12.01 0.00 0.00 1.40
4391 12294 5.468746 ACAGTGCACGTACATTTTGACTAAT 59.531 36.000 12.01 0.00 0.00 1.73
4392 12295 4.812091 ACAGTGCACGTACATTTTGACTAA 59.188 37.500 12.01 0.00 0.00 2.24
4393 12296 4.373527 ACAGTGCACGTACATTTTGACTA 58.626 39.130 12.01 0.00 0.00 2.59
4394 12297 3.202906 ACAGTGCACGTACATTTTGACT 58.797 40.909 12.01 0.00 0.00 3.41
4395 12298 3.602390 ACAGTGCACGTACATTTTGAC 57.398 42.857 12.01 0.00 0.00 3.18
4396 12299 4.095036 TCAAACAGTGCACGTACATTTTGA 59.905 37.500 12.01 16.15 34.21 2.69
4397 12300 4.346970 TCAAACAGTGCACGTACATTTTG 58.653 39.130 12.01 14.35 0.00 2.44
4398 12301 4.597079 CTCAAACAGTGCACGTACATTTT 58.403 39.130 12.01 3.17 0.00 1.82
4399 12302 3.548014 GCTCAAACAGTGCACGTACATTT 60.548 43.478 12.01 6.14 36.75 2.32
4400 12303 2.032030 GCTCAAACAGTGCACGTACATT 60.032 45.455 12.01 0.92 36.75 2.71
4401 12304 1.531149 GCTCAAACAGTGCACGTACAT 59.469 47.619 12.01 0.00 36.75 2.29
4402 12305 0.934496 GCTCAAACAGTGCACGTACA 59.066 50.000 12.01 0.00 36.75 2.90
4403 12306 0.934496 TGCTCAAACAGTGCACGTAC 59.066 50.000 12.01 0.00 41.43 3.67
4404 12307 1.202475 TCTGCTCAAACAGTGCACGTA 60.202 47.619 12.01 0.00 41.43 3.57
4405 12308 0.461870 TCTGCTCAAACAGTGCACGT 60.462 50.000 12.01 9.84 41.43 4.49
4406 12309 0.870393 ATCTGCTCAAACAGTGCACG 59.130 50.000 12.01 9.15 41.43 5.34
4407 12310 3.360249 AAATCTGCTCAAACAGTGCAC 57.640 42.857 9.40 9.40 41.43 4.57
4408 12311 3.130869 ACAAAATCTGCTCAAACAGTGCA 59.869 39.130 0.00 0.00 43.83 4.57
4409 12312 3.709987 ACAAAATCTGCTCAAACAGTGC 58.290 40.909 0.00 0.00 38.84 4.40
4410 12313 7.935338 AATTACAAAATCTGCTCAAACAGTG 57.065 32.000 0.00 0.00 38.84 3.66
4411 12314 8.819974 CAAAATTACAAAATCTGCTCAAACAGT 58.180 29.630 0.00 0.00 38.84 3.55
4412 12315 8.819974 ACAAAATTACAAAATCTGCTCAAACAG 58.180 29.630 0.00 0.00 39.12 3.16
4413 12316 8.715191 ACAAAATTACAAAATCTGCTCAAACA 57.285 26.923 0.00 0.00 0.00 2.83
4414 12317 9.034544 AGACAAAATTACAAAATCTGCTCAAAC 57.965 29.630 0.00 0.00 0.00 2.93
4415 12318 9.598517 AAGACAAAATTACAAAATCTGCTCAAA 57.401 25.926 0.00 0.00 0.00 2.69
4416 12319 9.598517 AAAGACAAAATTACAAAATCTGCTCAA 57.401 25.926 0.00 0.00 0.00 3.02
4417 12320 9.598517 AAAAGACAAAATTACAAAATCTGCTCA 57.401 25.926 0.00 0.00 0.00 4.26
4441 12344 3.021269 TCGAGAAGCGCTCTACAAAAA 57.979 42.857 12.06 0.00 41.66 1.94
4442 12345 2.717580 TCGAGAAGCGCTCTACAAAA 57.282 45.000 12.06 0.00 41.66 2.44
4443 12346 2.717580 TTCGAGAAGCGCTCTACAAA 57.282 45.000 12.06 0.00 41.66 2.83
4444 12347 2.094700 ACATTCGAGAAGCGCTCTACAA 60.095 45.455 12.06 6.42 41.66 2.41
4445 12348 1.472878 ACATTCGAGAAGCGCTCTACA 59.527 47.619 12.06 0.00 41.66 2.74
4446 12349 2.196295 ACATTCGAGAAGCGCTCTAC 57.804 50.000 12.06 5.66 41.66 2.59
4447 12350 2.941453 AACATTCGAGAAGCGCTCTA 57.059 45.000 12.06 0.00 41.66 2.43
4448 12351 2.941453 TAACATTCGAGAAGCGCTCT 57.059 45.000 12.06 10.03 41.66 4.09
4449 12352 4.032900 TCAAATAACATTCGAGAAGCGCTC 59.967 41.667 12.06 4.30 40.61 5.03
4450 12353 3.932710 TCAAATAACATTCGAGAAGCGCT 59.067 39.130 2.64 2.64 40.61 5.92
4451 12354 4.022475 GTCAAATAACATTCGAGAAGCGC 58.978 43.478 0.00 0.00 40.61 5.92
4452 12355 4.092821 TGGTCAAATAACATTCGAGAAGCG 59.907 41.667 0.00 0.00 42.69 4.68
4453 12356 5.324697 GTGGTCAAATAACATTCGAGAAGC 58.675 41.667 0.00 0.00 0.00 3.86
4454 12357 5.411361 TGGTGGTCAAATAACATTCGAGAAG 59.589 40.000 0.00 0.00 0.00 2.85
4455 12358 5.309638 TGGTGGTCAAATAACATTCGAGAA 58.690 37.500 0.00 0.00 0.00 2.87
4456 12359 4.900684 TGGTGGTCAAATAACATTCGAGA 58.099 39.130 0.00 0.00 0.00 4.04
4457 12360 5.621197 TTGGTGGTCAAATAACATTCGAG 57.379 39.130 0.00 0.00 31.46 4.04
4458 12361 5.533154 AGTTTGGTGGTCAAATAACATTCGA 59.467 36.000 0.00 0.00 45.79 3.71
4459 12362 5.768317 AGTTTGGTGGTCAAATAACATTCG 58.232 37.500 0.00 0.00 45.79 3.34
4460 12363 7.518211 GCAAAGTTTGGTGGTCAAATAACATTC 60.518 37.037 17.11 0.00 45.79 2.67
4461 12364 6.259829 GCAAAGTTTGGTGGTCAAATAACATT 59.740 34.615 17.11 0.00 45.79 2.71
4462 12365 5.757808 GCAAAGTTTGGTGGTCAAATAACAT 59.242 36.000 17.11 0.00 45.79 2.71
4463 12366 5.112686 GCAAAGTTTGGTGGTCAAATAACA 58.887 37.500 17.11 0.00 45.79 2.41
4464 12367 5.112686 TGCAAAGTTTGGTGGTCAAATAAC 58.887 37.500 17.11 0.00 45.79 1.89
4465 12368 5.344743 TGCAAAGTTTGGTGGTCAAATAA 57.655 34.783 17.11 0.00 45.79 1.40
4466 12369 5.344743 TTGCAAAGTTTGGTGGTCAAATA 57.655 34.783 17.11 0.00 45.79 1.40
4467 12370 3.902881 TGCAAAGTTTGGTGGTCAAAT 57.097 38.095 17.11 0.00 45.79 2.32
4468 12371 3.685139 TTGCAAAGTTTGGTGGTCAAA 57.315 38.095 17.11 0.00 42.50 2.69
4469 12372 3.330267 GTTTGCAAAGTTTGGTGGTCAA 58.670 40.909 13.26 9.19 0.00 3.18
4470 12373 2.354203 GGTTTGCAAAGTTTGGTGGTCA 60.354 45.455 13.26 3.47 0.00 4.02
4471 12374 2.276201 GGTTTGCAAAGTTTGGTGGTC 58.724 47.619 13.26 0.82 0.00 4.02
4472 12375 1.065782 GGGTTTGCAAAGTTTGGTGGT 60.066 47.619 13.26 0.00 0.00 4.16
4473 12376 1.209261 AGGGTTTGCAAAGTTTGGTGG 59.791 47.619 13.26 0.00 0.00 4.61
4474 12377 2.093764 TGAGGGTTTGCAAAGTTTGGTG 60.094 45.455 13.26 0.00 0.00 4.17
4475 12378 2.183679 TGAGGGTTTGCAAAGTTTGGT 58.816 42.857 13.26 0.00 0.00 3.67
4476 12379 2.977772 TGAGGGTTTGCAAAGTTTGG 57.022 45.000 13.26 0.00 0.00 3.28
4477 12380 5.355596 TGTTATGAGGGTTTGCAAAGTTTG 58.644 37.500 13.26 11.41 0.00 2.93
4478 12381 5.606348 TGTTATGAGGGTTTGCAAAGTTT 57.394 34.783 13.26 0.11 0.00 2.66
4479 12382 5.806654 ATGTTATGAGGGTTTGCAAAGTT 57.193 34.783 13.26 0.51 0.00 2.66
4480 12383 5.806654 AATGTTATGAGGGTTTGCAAAGT 57.193 34.783 13.26 0.00 0.00 2.66
4481 12384 5.990996 ACAAATGTTATGAGGGTTTGCAAAG 59.009 36.000 13.26 0.00 34.12 2.77
4482 12385 5.923204 ACAAATGTTATGAGGGTTTGCAAA 58.077 33.333 8.05 8.05 34.12 3.68
4483 12386 5.543507 ACAAATGTTATGAGGGTTTGCAA 57.456 34.783 0.00 0.00 34.12 4.08
4484 12387 5.069648 TCAACAAATGTTATGAGGGTTTGCA 59.930 36.000 0.00 0.00 36.32 4.08
4485 12388 5.537188 TCAACAAATGTTATGAGGGTTTGC 58.463 37.500 0.00 0.00 36.32 3.68
4486 12389 7.377398 TCATCAACAAATGTTATGAGGGTTTG 58.623 34.615 0.00 0.00 36.32 2.93
4487 12390 7.537596 TCATCAACAAATGTTATGAGGGTTT 57.462 32.000 0.00 0.00 36.32 3.27
4488 12391 7.396907 TGATCATCAACAAATGTTATGAGGGTT 59.603 33.333 16.25 6.79 36.32 4.11
4489 12392 6.891361 TGATCATCAACAAATGTTATGAGGGT 59.109 34.615 16.25 5.48 36.32 4.34
4490 12393 7.337480 TGATCATCAACAAATGTTATGAGGG 57.663 36.000 16.25 4.98 36.32 4.30
4491 12394 9.811995 AAATGATCATCAACAAATGTTATGAGG 57.188 29.630 9.06 8.22 36.32 3.86
4493 12396 9.806203 GGAAATGATCATCAACAAATGTTATGA 57.194 29.630 9.06 14.75 36.32 2.15
4494 12397 9.589111 TGGAAATGATCATCAACAAATGTTATG 57.411 29.630 9.06 4.49 36.32 1.90
4495 12398 9.590451 GTGGAAATGATCATCAACAAATGTTAT 57.410 29.630 9.06 0.00 36.32 1.89
4496 12399 7.754475 CGTGGAAATGATCATCAACAAATGTTA 59.246 33.333 9.06 0.00 36.32 2.41
4497 12400 6.587226 CGTGGAAATGATCATCAACAAATGTT 59.413 34.615 9.06 0.00 39.12 2.71
4498 12401 6.072008 TCGTGGAAATGATCATCAACAAATGT 60.072 34.615 9.06 0.00 0.00 2.71
4499 12402 6.324042 TCGTGGAAATGATCATCAACAAATG 58.676 36.000 9.06 0.00 0.00 2.32
4500 12403 6.513806 TCGTGGAAATGATCATCAACAAAT 57.486 33.333 9.06 0.00 0.00 2.32
4501 12404 5.956068 TCGTGGAAATGATCATCAACAAA 57.044 34.783 9.06 0.00 0.00 2.83
4502 12405 5.473162 ACTTCGTGGAAATGATCATCAACAA 59.527 36.000 9.06 0.00 0.00 2.83
4503 12406 5.003160 ACTTCGTGGAAATGATCATCAACA 58.997 37.500 9.06 5.42 0.00 3.33
4504 12407 5.551760 ACTTCGTGGAAATGATCATCAAC 57.448 39.130 9.06 0.98 0.00 3.18
4505 12408 6.206438 TGAAACTTCGTGGAAATGATCATCAA 59.794 34.615 9.06 0.00 0.00 2.57
4506 12409 5.704978 TGAAACTTCGTGGAAATGATCATCA 59.295 36.000 9.06 0.00 0.00 3.07
4507 12410 6.128172 ACTGAAACTTCGTGGAAATGATCATC 60.128 38.462 9.06 0.00 0.00 2.92
4508 12411 5.707298 ACTGAAACTTCGTGGAAATGATCAT 59.293 36.000 1.18 1.18 0.00 2.45
4509 12412 5.063204 ACTGAAACTTCGTGGAAATGATCA 58.937 37.500 0.00 0.00 0.00 2.92
4510 12413 5.613358 ACTGAAACTTCGTGGAAATGATC 57.387 39.130 0.00 0.00 0.00 2.92
4511 12414 6.391227 AAACTGAAACTTCGTGGAAATGAT 57.609 33.333 0.00 0.00 0.00 2.45
4512 12415 5.828299 AAACTGAAACTTCGTGGAAATGA 57.172 34.783 0.00 0.00 0.00 2.57
4513 12416 6.885735 AAAAACTGAAACTTCGTGGAAATG 57.114 33.333 0.00 0.00 0.00 2.32
4542 12445 9.044150 CCACACAAGAAAACATATCAAAACATT 57.956 29.630 0.00 0.00 0.00 2.71
4543 12446 7.656948 CCCACACAAGAAAACATATCAAAACAT 59.343 33.333 0.00 0.00 0.00 2.71
4544 12447 6.983307 CCCACACAAGAAAACATATCAAAACA 59.017 34.615 0.00 0.00 0.00 2.83
4545 12448 6.983890 ACCCACACAAGAAAACATATCAAAAC 59.016 34.615 0.00 0.00 0.00 2.43
4546 12449 6.983307 CACCCACACAAGAAAACATATCAAAA 59.017 34.615 0.00 0.00 0.00 2.44
4547 12450 6.511416 CACCCACACAAGAAAACATATCAAA 58.489 36.000 0.00 0.00 0.00 2.69
4548 12451 5.508825 GCACCCACACAAGAAAACATATCAA 60.509 40.000 0.00 0.00 0.00 2.57
4549 12452 4.022416 GCACCCACACAAGAAAACATATCA 60.022 41.667 0.00 0.00 0.00 2.15
4550 12453 4.022416 TGCACCCACACAAGAAAACATATC 60.022 41.667 0.00 0.00 0.00 1.63
4551 12454 3.894427 TGCACCCACACAAGAAAACATAT 59.106 39.130 0.00 0.00 0.00 1.78
4552 12455 3.067461 GTGCACCCACACAAGAAAACATA 59.933 43.478 5.22 0.00 41.67 2.29
4553 12456 2.106566 TGCACCCACACAAGAAAACAT 58.893 42.857 0.00 0.00 0.00 2.71
4554 12457 1.203523 GTGCACCCACACAAGAAAACA 59.796 47.619 5.22 0.00 41.67 2.83
4555 12458 1.470805 GGTGCACCCACACAAGAAAAC 60.471 52.381 26.31 0.00 43.88 2.43
4556 12459 0.820871 GGTGCACCCACACAAGAAAA 59.179 50.000 26.31 0.00 43.88 2.29
4557 12460 1.380403 CGGTGCACCCACACAAGAAA 61.380 55.000 29.95 0.00 43.88 2.52
4558 12461 1.821759 CGGTGCACCCACACAAGAA 60.822 57.895 29.95 0.00 43.88 2.52
4559 12462 2.203139 CGGTGCACCCACACAAGA 60.203 61.111 29.95 0.00 43.88 3.02
4560 12463 2.515991 ACGGTGCACCCACACAAG 60.516 61.111 29.95 16.16 43.88 3.16
4561 12464 2.826287 CACGGTGCACCCACACAA 60.826 61.111 29.95 0.00 43.88 3.33
4562 12465 4.866224 CCACGGTGCACCCACACA 62.866 66.667 29.95 0.00 43.88 3.72
4574 12477 2.740826 CTTACGGTGCACCCACGG 60.741 66.667 29.95 18.03 44.92 4.94
4575 12478 2.029964 ACTTACGGTGCACCCACG 59.970 61.111 29.95 20.26 43.00 4.94
4576 12479 1.964373 CCACTTACGGTGCACCCAC 60.964 63.158 29.95 5.86 44.08 4.61
4577 12480 2.428187 CCACTTACGGTGCACCCA 59.572 61.111 29.95 15.51 44.08 4.51
4578 12481 2.359478 CCCACTTACGGTGCACCC 60.359 66.667 29.95 12.55 44.08 4.61
4579 12482 1.964373 CACCCACTTACGGTGCACC 60.964 63.158 26.78 26.78 44.10 5.01
4580 12483 3.650369 CACCCACTTACGGTGCAC 58.350 61.111 8.80 8.80 44.10 4.57
4584 12487 1.228033 GGTTGCACCCACTTACGGT 60.228 57.895 0.00 0.00 30.04 4.83
4585 12488 1.228003 TGGTTGCACCCACTTACGG 60.228 57.895 0.00 0.00 37.50 4.02
4586 12489 4.466133 TGGTTGCACCCACTTACG 57.534 55.556 0.00 0.00 37.50 3.18
4592 12495 1.493022 AGAAAGTAGTGGTTGCACCCA 59.507 47.619 0.00 0.00 37.50 4.51
4593 12496 2.271944 AGAAAGTAGTGGTTGCACCC 57.728 50.000 0.00 0.00 37.50 4.61
4594 12497 3.211045 TGAAGAAAGTAGTGGTTGCACC 58.789 45.455 0.00 0.00 39.22 5.01
4595 12498 4.275936 ACATGAAGAAAGTAGTGGTTGCAC 59.724 41.667 0.00 0.00 0.00 4.57
4596 12499 4.460263 ACATGAAGAAAGTAGTGGTTGCA 58.540 39.130 0.00 0.00 0.00 4.08
4597 12500 5.438761 AACATGAAGAAAGTAGTGGTTGC 57.561 39.130 0.00 0.00 0.00 4.17
4598 12501 7.264373 AGAAACATGAAGAAAGTAGTGGTTG 57.736 36.000 0.00 0.00 0.00 3.77
4599 12502 7.881775 AAGAAACATGAAGAAAGTAGTGGTT 57.118 32.000 0.00 0.00 0.00 3.67
4600 12503 9.003658 CATAAGAAACATGAAGAAAGTAGTGGT 57.996 33.333 0.00 0.00 0.00 4.16
4601 12504 9.219603 TCATAAGAAACATGAAGAAAGTAGTGG 57.780 33.333 0.00 0.00 29.55 4.00
4641 12547 0.176680 ACATCGTCATCTCCAGTGCC 59.823 55.000 0.00 0.00 0.00 5.01
4776 12682 0.674895 ACATTCTTGCCGACCTCAGC 60.675 55.000 0.00 0.00 0.00 4.26
4826 12732 1.302511 GTTCACCATGCACCCGACT 60.303 57.895 0.00 0.00 0.00 4.18
4877 12783 1.079127 CGGGCAGTGGTTCTCGAAT 60.079 57.895 0.00 0.00 0.00 3.34
4898 12804 7.510001 TCGACCAAGTTATAGGTGGGAATTATA 59.490 37.037 0.00 0.00 38.50 0.98
5138 13044 1.600916 GGCCTTGCCGAACTTGACT 60.601 57.895 0.00 0.00 39.62 3.41
5296 15510 7.961827 CACTGAGATTTAGCAAGACTGAAAATC 59.038 37.037 0.00 0.00 37.06 2.17
5326 15540 3.197766 TCTCACGAATATGACCAAGCCTT 59.802 43.478 0.00 0.00 0.00 4.35
5336 15550 9.636879 ATCTCAATGTAAGATCTCACGAATATG 57.363 33.333 0.00 0.00 0.00 1.78
5342 15556 5.836347 TGGATCTCAATGTAAGATCTCACG 58.164 41.667 11.66 0.00 45.56 4.35
5391 15605 9.827411 GACATAACATGTAAGGAAGAAAAAGAC 57.173 33.333 0.00 0.00 45.03 3.01
5438 15652 1.248785 TGGGTGCGACTAGGTCTCAC 61.249 60.000 11.00 11.00 44.44 3.51
5449 15663 4.162320 AGAGAGAAAAATCTATGGGTGCGA 59.838 41.667 0.00 0.00 0.00 5.10
5454 15668 5.510520 CCGGAGAGAGAGAAAAATCTATGGG 60.511 48.000 0.00 0.00 0.00 4.00
5456 15670 4.987912 GCCGGAGAGAGAGAAAAATCTATG 59.012 45.833 5.05 0.00 0.00 2.23
5480 15694 7.551974 CAGACCAATACTCATGTTTTGATCTCT 59.448 37.037 0.00 0.00 36.35 3.10
5485 15699 5.316167 AGCAGACCAATACTCATGTTTTGA 58.684 37.500 0.00 0.00 37.32 2.69
5500 15714 9.906660 CATTTAAATTAAACAGTAAGCAGACCA 57.093 29.630 0.00 0.00 0.00 4.02
5530 15832 2.042831 ATCGCAGCCTGCAAAGACC 61.043 57.895 18.21 0.00 45.36 3.85
5588 15890 0.772124 GGAGAGGGGCCATGGGAATA 60.772 60.000 15.13 0.00 0.00 1.75
5720 16022 5.237779 GTCTGGAGACGATATATAGCTAGCC 59.762 48.000 12.13 0.00 35.12 3.93
5735 16040 4.021016 ACATAGGTTTGTGAGTCTGGAGAC 60.021 45.833 0.00 0.00 45.08 3.36
5743 16053 5.284861 TGTGTGTACATAGGTTTGTGAGT 57.715 39.130 0.00 0.00 0.00 3.41
5994 16383 3.047718 CTAAGTCACTCGGCGGCGA 62.048 63.158 32.59 32.59 0.00 5.54
5999 16388 0.101579 GAGAGCCTAAGTCACTCGGC 59.898 60.000 9.55 9.55 42.79 5.54
6000 16389 1.403679 CAGAGAGCCTAAGTCACTCGG 59.596 57.143 0.00 0.00 35.56 4.63
6001 16390 1.202245 GCAGAGAGCCTAAGTCACTCG 60.202 57.143 0.00 0.00 37.23 4.18
6002 16391 2.577449 GCAGAGAGCCTAAGTCACTC 57.423 55.000 0.00 0.00 37.23 3.51
6049 16444 5.435686 AAGTGGTCATCCTATGCAACTTA 57.564 39.130 0.00 0.00 32.55 2.24
6287 16683 2.355756 CACTATGCACTAACATGTGGGC 59.644 50.000 0.00 0.22 38.31 5.36
6717 17114 7.609760 AATCAGCGACAACTAATATGAAACA 57.390 32.000 0.00 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.