Multiple sequence alignment - TraesCS6D01G351400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G351400 chr6D 100.000 2420 0 0 1 2420 448579179 448581598 0.000000e+00 4470
1 TraesCS6D01G351400 chr6D 89.925 1330 111 13 588 1900 448595635 448596958 0.000000e+00 1692
2 TraesCS6D01G351400 chr6D 87.746 1322 128 19 588 1900 448564149 448565445 0.000000e+00 1513
3 TraesCS6D01G351400 chr6D 89.347 291 30 1 234 524 448595302 448595591 4.920000e-97 364
4 TraesCS6D01G351400 chr6D 87.586 290 31 4 1887 2174 448597206 448597492 4.990000e-87 331
5 TraesCS6D01G351400 chr6D 87.912 273 33 0 1898 2170 448565702 448565974 3.000000e-84 322
6 TraesCS6D01G351400 chr6D 88.208 212 25 0 313 524 448563894 448564105 1.110000e-63 254
7 TraesCS6D01G351400 chr6D 91.892 111 9 0 2224 2334 448597493 448597603 3.220000e-34 156
8 TraesCS6D01G351400 chr6D 85.950 121 15 2 253 373 448563556 448563674 7.020000e-26 128
9 TraesCS6D01G351400 chrUn 90.992 1321 109 7 591 1905 79404498 79405814 0.000000e+00 1772
10 TraesCS6D01G351400 chrUn 91.358 1134 92 4 776 1905 79378408 79379539 0.000000e+00 1546
11 TraesCS6D01G351400 chrUn 81.217 937 139 22 757 1683 294343963 294344872 0.000000e+00 721
12 TraesCS6D01G351400 chrUn 81.130 938 138 24 757 1683 79438761 79437852 0.000000e+00 715
13 TraesCS6D01G351400 chrUn 91.364 220 18 1 12 231 24148219 24148001 1.410000e-77 300
14 TraesCS6D01G351400 chrUn 92.424 198 14 1 2140 2336 79380827 79381024 5.090000e-72 281
15 TraesCS6D01G351400 chrUn 92.424 198 14 1 2140 2336 79407104 79407301 5.090000e-72 281
16 TraesCS6D01G351400 chrUn 89.899 198 19 1 2140 2336 79379987 79380184 1.110000e-63 254
17 TraesCS6D01G351400 chrUn 89.394 198 20 1 2140 2336 79406262 79406459 5.170000e-62 248
18 TraesCS6D01G351400 chr6A 84.054 1179 144 22 645 1795 594652900 594654062 0.000000e+00 1096
19 TraesCS6D01G351400 chr6A 85.822 1065 111 18 645 1682 594609142 594610193 0.000000e+00 1094
20 TraesCS6D01G351400 chr6A 87.205 297 35 2 229 523 594652510 594652805 3.860000e-88 335
21 TraesCS6D01G351400 chr6A 90.455 220 21 0 12 231 593803762 593803981 8.460000e-75 291
22 TraesCS6D01G351400 chr6A 89.116 147 12 3 229 373 594608722 594608866 1.910000e-41 180
23 TraesCS6D01G351400 chr6B 84.685 1110 124 27 609 1686 679566788 679565693 0.000000e+00 1066
24 TraesCS6D01G351400 chr6B 83.794 1086 134 23 633 1686 679551888 679550813 0.000000e+00 992
25 TraesCS6D01G351400 chr6B 87.640 534 53 6 1380 1900 679547767 679547234 2.060000e-170 608
26 TraesCS6D01G351400 chr6B 78.820 949 153 26 757 1683 679583959 679584881 1.600000e-166 595
27 TraesCS6D01G351400 chr6B 78.820 949 153 26 757 1683 679599356 679600278 1.600000e-166 595
28 TraesCS6D01G351400 chr7D 97.059 238 6 1 1 238 565018125 565017889 1.350000e-107 399
29 TraesCS6D01G351400 chr1D 95.238 231 11 0 1 231 139144912 139145142 1.370000e-97 366
30 TraesCS6D01G351400 chr3B 95.023 221 11 0 11 231 18304574 18304794 4.950000e-92 348
31 TraesCS6D01G351400 chr3A 92.511 227 16 1 6 231 738076991 738076765 8.350000e-85 324
32 TraesCS6D01G351400 chr5D 91.703 229 19 0 6 234 41365174 41364946 3.880000e-83 318
33 TraesCS6D01G351400 chr2D 91.031 223 20 0 12 234 15191883 15192105 3.910000e-78 302
34 TraesCS6D01G351400 chr4D 90.950 221 20 0 12 232 93385801 93386021 5.060000e-77 298


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G351400 chr6D 448579179 448581598 2419 False 4470.000000 4470 100.000000 1 2420 1 chr6D.!!$F1 2419
1 TraesCS6D01G351400 chr6D 448595302 448597603 2301 False 635.750000 1692 89.687500 234 2334 4 chr6D.!!$F3 2100
2 TraesCS6D01G351400 chr6D 448563556 448565974 2418 False 554.250000 1513 87.454000 253 2170 4 chr6D.!!$F2 1917
3 TraesCS6D01G351400 chrUn 79404498 79407301 2803 False 767.000000 1772 90.936667 591 2336 3 chrUn.!!$F3 1745
4 TraesCS6D01G351400 chrUn 294343963 294344872 909 False 721.000000 721 81.217000 757 1683 1 chrUn.!!$F1 926
5 TraesCS6D01G351400 chrUn 79437852 79438761 909 True 715.000000 715 81.130000 757 1683 1 chrUn.!!$R2 926
6 TraesCS6D01G351400 chrUn 79378408 79381024 2616 False 693.666667 1546 91.227000 776 2336 3 chrUn.!!$F2 1560
7 TraesCS6D01G351400 chr6A 594652510 594654062 1552 False 715.500000 1096 85.629500 229 1795 2 chr6A.!!$F3 1566
8 TraesCS6D01G351400 chr6A 594608722 594610193 1471 False 637.000000 1094 87.469000 229 1682 2 chr6A.!!$F2 1453
9 TraesCS6D01G351400 chr6B 679565693 679566788 1095 True 1066.000000 1066 84.685000 609 1686 1 chr6B.!!$R1 1077
10 TraesCS6D01G351400 chr6B 679547234 679551888 4654 True 800.000000 992 85.717000 633 1900 2 chr6B.!!$R2 1267
11 TraesCS6D01G351400 chr6B 679583959 679584881 922 False 595.000000 595 78.820000 757 1683 1 chr6B.!!$F1 926
12 TraesCS6D01G351400 chr6B 679599356 679600278 922 False 595.000000 595 78.820000 757 1683 1 chr6B.!!$F2 926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
569 882 0.034616 TTTTTCATGCAAAGGCCGGG 59.965 50.0 2.18 0.0 40.13 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2346 7179 0.031314 CATCTCCGTCGTCTCCATGG 59.969 60.0 4.97 4.97 0.0 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.514824 GCAATGGCGAGTCTCCCC 60.515 66.667 0.00 0.00 0.00 4.81
24 25 3.036429 GCAATGGCGAGTCTCCCCT 62.036 63.158 5.16 0.00 0.00 4.79
25 26 1.153289 CAATGGCGAGTCTCCCCTG 60.153 63.158 5.16 0.00 0.00 4.45
26 27 2.370445 AATGGCGAGTCTCCCCTGG 61.370 63.158 5.16 0.00 0.00 4.45
29 30 3.474570 GCGAGTCTCCCCTGGCAT 61.475 66.667 0.00 0.00 36.34 4.40
30 31 3.036429 GCGAGTCTCCCCTGGCATT 62.036 63.158 0.00 0.00 36.34 3.56
31 32 1.153289 CGAGTCTCCCCTGGCATTG 60.153 63.158 0.00 0.00 0.00 2.82
32 33 1.617018 CGAGTCTCCCCTGGCATTGA 61.617 60.000 0.00 0.00 0.00 2.57
33 34 0.107459 GAGTCTCCCCTGGCATTGAC 60.107 60.000 0.00 0.00 0.00 3.18
34 35 0.548682 AGTCTCCCCTGGCATTGACT 60.549 55.000 0.00 0.00 0.00 3.41
35 36 0.329596 GTCTCCCCTGGCATTGACTT 59.670 55.000 0.00 0.00 0.00 3.01
36 37 1.075601 TCTCCCCTGGCATTGACTTT 58.924 50.000 0.00 0.00 0.00 2.66
37 38 1.428912 TCTCCCCTGGCATTGACTTTT 59.571 47.619 0.00 0.00 0.00 2.27
38 39 1.821136 CTCCCCTGGCATTGACTTTTC 59.179 52.381 0.00 0.00 0.00 2.29
39 40 1.146774 TCCCCTGGCATTGACTTTTCA 59.853 47.619 0.00 0.00 0.00 2.69
40 41 1.547372 CCCCTGGCATTGACTTTTCAG 59.453 52.381 0.00 0.00 31.71 3.02
41 42 1.067354 CCCTGGCATTGACTTTTCAGC 60.067 52.381 0.00 0.00 31.71 4.26
42 43 1.067354 CCTGGCATTGACTTTTCAGCC 60.067 52.381 0.00 0.00 41.49 4.85
43 44 1.614903 CTGGCATTGACTTTTCAGCCA 59.385 47.619 0.00 0.00 46.02 4.75
44 45 1.340889 TGGCATTGACTTTTCAGCCAC 59.659 47.619 0.00 0.00 44.31 5.01
45 46 1.340889 GGCATTGACTTTTCAGCCACA 59.659 47.619 0.00 0.00 41.01 4.17
46 47 2.028748 GGCATTGACTTTTCAGCCACAT 60.029 45.455 0.00 0.00 41.01 3.21
47 48 3.248266 GCATTGACTTTTCAGCCACATC 58.752 45.455 0.00 0.00 31.71 3.06
48 49 3.305539 GCATTGACTTTTCAGCCACATCA 60.306 43.478 0.00 0.00 31.71 3.07
49 50 4.482386 CATTGACTTTTCAGCCACATCAG 58.518 43.478 0.00 0.00 31.71 2.90
50 51 1.881973 TGACTTTTCAGCCACATCAGC 59.118 47.619 0.00 0.00 0.00 4.26
51 52 1.200948 GACTTTTCAGCCACATCAGCC 59.799 52.381 0.00 0.00 0.00 4.85
52 53 0.529378 CTTTTCAGCCACATCAGCCC 59.471 55.000 0.00 0.00 0.00 5.19
53 54 0.112995 TTTTCAGCCACATCAGCCCT 59.887 50.000 0.00 0.00 0.00 5.19
54 55 0.609957 TTTCAGCCACATCAGCCCTG 60.610 55.000 0.00 0.00 0.00 4.45
55 56 1.491274 TTCAGCCACATCAGCCCTGA 61.491 55.000 0.00 0.00 44.59 3.86
56 57 1.748122 CAGCCACATCAGCCCTGAC 60.748 63.158 0.00 0.00 43.11 3.51
57 58 2.821366 GCCACATCAGCCCTGACG 60.821 66.667 0.00 0.00 43.11 4.35
58 59 2.124983 CCACATCAGCCCTGACGG 60.125 66.667 0.00 0.00 43.11 4.79
67 68 4.722700 CCCTGACGGGTTGGCCAG 62.723 72.222 5.11 0.00 46.12 4.85
68 69 3.953775 CCTGACGGGTTGGCCAGT 61.954 66.667 5.11 0.00 45.77 4.00
69 70 2.113139 CTGACGGGTTGGCCAGTT 59.887 61.111 5.11 0.00 43.18 3.16
70 71 1.528309 CTGACGGGTTGGCCAGTTT 60.528 57.895 5.11 0.00 43.18 2.66
71 72 1.076632 TGACGGGTTGGCCAGTTTT 60.077 52.632 5.11 0.00 43.18 2.43
72 73 1.362355 GACGGGTTGGCCAGTTTTG 59.638 57.895 5.11 0.00 43.18 2.44
73 74 1.380650 ACGGGTTGGCCAGTTTTGT 60.381 52.632 5.11 0.00 40.26 2.83
74 75 1.362355 CGGGTTGGCCAGTTTTGTC 59.638 57.895 5.11 0.00 36.17 3.18
75 76 1.388065 CGGGTTGGCCAGTTTTGTCA 61.388 55.000 5.11 0.00 36.17 3.58
76 77 0.389025 GGGTTGGCCAGTTTTGTCAG 59.611 55.000 5.11 0.00 36.17 3.51
77 78 1.111277 GGTTGGCCAGTTTTGTCAGT 58.889 50.000 5.11 0.00 34.09 3.41
78 79 1.480545 GGTTGGCCAGTTTTGTCAGTT 59.519 47.619 5.11 0.00 34.09 3.16
79 80 2.093711 GGTTGGCCAGTTTTGTCAGTTT 60.094 45.455 5.11 0.00 34.09 2.66
80 81 3.595173 GTTGGCCAGTTTTGTCAGTTTT 58.405 40.909 5.11 0.00 0.00 2.43
81 82 3.518634 TGGCCAGTTTTGTCAGTTTTC 57.481 42.857 0.00 0.00 0.00 2.29
82 83 3.096092 TGGCCAGTTTTGTCAGTTTTCT 58.904 40.909 0.00 0.00 0.00 2.52
84 85 3.119137 GGCCAGTTTTGTCAGTTTTCTGT 60.119 43.478 0.00 0.00 46.98 3.41
85 86 4.494484 GCCAGTTTTGTCAGTTTTCTGTT 58.506 39.130 0.00 0.00 46.98 3.16
86 87 4.929211 GCCAGTTTTGTCAGTTTTCTGTTT 59.071 37.500 0.00 0.00 46.98 2.83
87 88 6.096695 GCCAGTTTTGTCAGTTTTCTGTTTA 58.903 36.000 0.00 0.00 46.98 2.01
88 89 6.588373 GCCAGTTTTGTCAGTTTTCTGTTTAA 59.412 34.615 0.00 0.00 46.98 1.52
89 90 7.117092 GCCAGTTTTGTCAGTTTTCTGTTTAAA 59.883 33.333 0.00 0.00 46.98 1.52
90 91 9.150348 CCAGTTTTGTCAGTTTTCTGTTTAAAT 57.850 29.630 0.00 0.00 46.98 1.40
92 93 9.072294 AGTTTTGTCAGTTTTCTGTTTAAATCG 57.928 29.630 0.00 0.00 46.98 3.34
93 94 8.856247 GTTTTGTCAGTTTTCTGTTTAAATCGT 58.144 29.630 0.00 0.00 46.98 3.73
94 95 8.609478 TTTGTCAGTTTTCTGTTTAAATCGTC 57.391 30.769 0.00 0.00 46.98 4.20
95 96 7.548196 TGTCAGTTTTCTGTTTAAATCGTCT 57.452 32.000 0.00 0.00 46.98 4.18
96 97 8.651391 TGTCAGTTTTCTGTTTAAATCGTCTA 57.349 30.769 0.00 0.00 46.98 2.59
97 98 9.100554 TGTCAGTTTTCTGTTTAAATCGTCTAA 57.899 29.630 0.00 0.00 46.98 2.10
98 99 9.925268 GTCAGTTTTCTGTTTAAATCGTCTAAA 57.075 29.630 0.00 0.00 46.98 1.85
101 102 9.726232 AGTTTTCTGTTTAAATCGTCTAAAACC 57.274 29.630 0.00 0.00 35.80 3.27
102 103 9.505995 GTTTTCTGTTTAAATCGTCTAAAACCA 57.494 29.630 0.00 0.00 32.18 3.67
104 105 9.887406 TTTCTGTTTAAATCGTCTAAAACCATC 57.113 29.630 0.00 0.00 32.18 3.51
105 106 8.610248 TCTGTTTAAATCGTCTAAAACCATCA 57.390 30.769 0.00 0.00 32.18 3.07
106 107 9.226606 TCTGTTTAAATCGTCTAAAACCATCAT 57.773 29.630 0.00 0.00 32.18 2.45
107 108 9.490663 CTGTTTAAATCGTCTAAAACCATCATC 57.509 33.333 0.00 0.00 32.18 2.92
108 109 9.004717 TGTTTAAATCGTCTAAAACCATCATCA 57.995 29.630 0.00 0.00 32.18 3.07
109 110 9.834628 GTTTAAATCGTCTAAAACCATCATCAA 57.165 29.630 0.00 0.00 0.00 2.57
110 111 9.834628 TTTAAATCGTCTAAAACCATCATCAAC 57.165 29.630 0.00 0.00 0.00 3.18
111 112 7.687941 AAATCGTCTAAAACCATCATCAACT 57.312 32.000 0.00 0.00 0.00 3.16
112 113 6.668541 ATCGTCTAAAACCATCATCAACTG 57.331 37.500 0.00 0.00 0.00 3.16
113 114 5.789521 TCGTCTAAAACCATCATCAACTGA 58.210 37.500 0.00 0.00 38.53 3.41
114 115 6.227522 TCGTCTAAAACCATCATCAACTGAA 58.772 36.000 0.00 0.00 37.44 3.02
115 116 6.708502 TCGTCTAAAACCATCATCAACTGAAA 59.291 34.615 0.00 0.00 37.44 2.69
116 117 6.797033 CGTCTAAAACCATCATCAACTGAAAC 59.203 38.462 0.00 0.00 37.44 2.78
117 118 7.307989 CGTCTAAAACCATCATCAACTGAAACT 60.308 37.037 0.00 0.00 37.44 2.66
118 119 7.805071 GTCTAAAACCATCATCAACTGAAACTG 59.195 37.037 0.00 0.00 37.44 3.16
119 120 5.458041 AAACCATCATCAACTGAAACTGG 57.542 39.130 0.00 0.00 37.44 4.00
120 121 4.104383 ACCATCATCAACTGAAACTGGT 57.896 40.909 5.20 5.20 37.44 4.00
121 122 5.241403 ACCATCATCAACTGAAACTGGTA 57.759 39.130 8.06 0.00 37.44 3.25
122 123 5.248640 ACCATCATCAACTGAAACTGGTAG 58.751 41.667 8.06 0.00 37.44 3.18
123 124 5.221925 ACCATCATCAACTGAAACTGGTAGT 60.222 40.000 8.06 0.00 37.44 2.73
124 125 5.707298 CCATCATCAACTGAAACTGGTAGTT 59.293 40.000 0.00 0.00 40.80 2.24
137 138 7.907841 AAACTGGTAGTTTTTAGGGACAAAT 57.092 32.000 1.32 0.00 45.38 2.32
138 139 7.907841 AACTGGTAGTTTTTAGGGACAAATT 57.092 32.000 0.00 0.00 34.11 1.82
139 140 8.999905 AACTGGTAGTTTTTAGGGACAAATTA 57.000 30.769 0.00 0.00 34.11 1.40
140 141 8.999905 ACTGGTAGTTTTTAGGGACAAATTAA 57.000 30.769 0.00 0.00 0.00 1.40
141 142 9.074576 ACTGGTAGTTTTTAGGGACAAATTAAG 57.925 33.333 0.00 0.00 0.00 1.85
142 143 9.292195 CTGGTAGTTTTTAGGGACAAATTAAGA 57.708 33.333 0.00 0.00 0.00 2.10
143 144 9.643735 TGGTAGTTTTTAGGGACAAATTAAGAA 57.356 29.630 0.00 0.00 0.00 2.52
151 152 9.699703 TTTAGGGACAAATTAAGAAATTTTCGG 57.300 29.630 3.57 0.00 41.50 4.30
152 153 7.297936 AGGGACAAATTAAGAAATTTTCGGT 57.702 32.000 3.57 0.00 41.50 4.69
153 154 8.411991 AGGGACAAATTAAGAAATTTTCGGTA 57.588 30.769 3.57 0.00 41.50 4.02
154 155 8.520351 AGGGACAAATTAAGAAATTTTCGGTAG 58.480 33.333 3.57 0.00 41.50 3.18
155 156 8.301720 GGGACAAATTAAGAAATTTTCGGTAGT 58.698 33.333 3.57 0.00 41.50 2.73
156 157 9.687210 GGACAAATTAAGAAATTTTCGGTAGTT 57.313 29.630 3.57 1.92 41.50 2.24
161 162 8.959734 ATTAAGAAATTTTCGGTAGTTTTCGG 57.040 30.769 3.57 0.00 32.84 4.30
162 163 6.381481 AAGAAATTTTCGGTAGTTTTCGGT 57.619 33.333 3.57 0.00 32.84 4.69
163 164 5.993891 AGAAATTTTCGGTAGTTTTCGGTC 58.006 37.500 3.57 0.00 32.84 4.79
164 165 5.528320 AGAAATTTTCGGTAGTTTTCGGTCA 59.472 36.000 3.57 0.00 32.84 4.02
165 166 5.754543 AATTTTCGGTAGTTTTCGGTCAA 57.245 34.783 0.00 0.00 0.00 3.18
166 167 5.754543 ATTTTCGGTAGTTTTCGGTCAAA 57.245 34.783 0.00 0.00 0.00 2.69
167 168 5.557891 TTTTCGGTAGTTTTCGGTCAAAA 57.442 34.783 0.00 0.00 0.00 2.44
168 169 5.754543 TTTCGGTAGTTTTCGGTCAAAAT 57.245 34.783 0.00 0.00 36.35 1.82
169 170 5.754543 TTCGGTAGTTTTCGGTCAAAATT 57.245 34.783 0.00 0.00 36.35 1.82
170 171 5.754543 TCGGTAGTTTTCGGTCAAAATTT 57.245 34.783 0.00 0.00 36.35 1.82
171 172 6.134040 TCGGTAGTTTTCGGTCAAAATTTT 57.866 33.333 0.00 0.00 36.35 1.82
172 173 6.200808 TCGGTAGTTTTCGGTCAAAATTTTC 58.799 36.000 0.00 0.00 36.35 2.29
173 174 5.972382 CGGTAGTTTTCGGTCAAAATTTTCA 59.028 36.000 0.00 0.00 36.35 2.69
174 175 6.472808 CGGTAGTTTTCGGTCAAAATTTTCAA 59.527 34.615 0.00 0.00 36.35 2.69
175 176 7.009357 CGGTAGTTTTCGGTCAAAATTTTCAAA 59.991 33.333 0.00 0.00 36.35 2.69
176 177 8.325282 GGTAGTTTTCGGTCAAAATTTTCAAAG 58.675 33.333 0.00 0.00 36.35 2.77
177 178 7.899178 AGTTTTCGGTCAAAATTTTCAAAGT 57.101 28.000 0.00 0.00 36.35 2.66
178 179 7.738345 AGTTTTCGGTCAAAATTTTCAAAGTG 58.262 30.769 0.00 0.00 36.35 3.16
179 180 5.710613 TTCGGTCAAAATTTTCAAAGTGC 57.289 34.783 0.00 0.00 0.00 4.40
180 181 5.004922 TCGGTCAAAATTTTCAAAGTGCT 57.995 34.783 0.00 0.00 0.00 4.40
181 182 6.137794 TCGGTCAAAATTTTCAAAGTGCTA 57.862 33.333 0.00 0.00 0.00 3.49
182 183 6.205784 TCGGTCAAAATTTTCAAAGTGCTAG 58.794 36.000 0.00 0.00 0.00 3.42
183 184 5.977129 CGGTCAAAATTTTCAAAGTGCTAGT 59.023 36.000 0.00 0.00 0.00 2.57
184 185 6.475402 CGGTCAAAATTTTCAAAGTGCTAGTT 59.525 34.615 0.00 0.00 0.00 2.24
185 186 7.305993 CGGTCAAAATTTTCAAAGTGCTAGTTC 60.306 37.037 0.00 0.00 0.00 3.01
186 187 7.706607 GGTCAAAATTTTCAAAGTGCTAGTTCT 59.293 33.333 0.00 0.00 0.00 3.01
187 188 8.534778 GTCAAAATTTTCAAAGTGCTAGTTCTG 58.465 33.333 0.00 0.00 0.00 3.02
188 189 8.250332 TCAAAATTTTCAAAGTGCTAGTTCTGT 58.750 29.630 0.00 0.00 0.00 3.41
189 190 7.992180 AAATTTTCAAAGTGCTAGTTCTGTG 57.008 32.000 0.00 0.00 0.00 3.66
190 191 5.499139 TTTTCAAAGTGCTAGTTCTGTGG 57.501 39.130 6.63 0.00 0.00 4.17
191 192 3.126001 TCAAAGTGCTAGTTCTGTGGG 57.874 47.619 6.63 0.00 0.00 4.61
192 193 2.703536 TCAAAGTGCTAGTTCTGTGGGA 59.296 45.455 6.63 0.00 0.00 4.37
193 194 2.808543 CAAAGTGCTAGTTCTGTGGGAC 59.191 50.000 0.00 0.00 0.00 4.46
194 195 0.603569 AGTGCTAGTTCTGTGGGACG 59.396 55.000 0.00 0.00 0.00 4.79
195 196 1.014564 GTGCTAGTTCTGTGGGACGC 61.015 60.000 0.00 0.00 40.62 5.19
196 197 1.448013 GCTAGTTCTGTGGGACGCC 60.448 63.158 0.00 0.00 38.60 5.68
197 198 1.153823 CTAGTTCTGTGGGACGCCG 60.154 63.158 0.00 0.00 38.60 6.46
198 199 1.592400 CTAGTTCTGTGGGACGCCGA 61.592 60.000 0.00 0.00 38.60 5.54
199 200 1.870055 TAGTTCTGTGGGACGCCGAC 61.870 60.000 0.00 4.52 38.60 4.79
200 201 3.998672 TTCTGTGGGACGCCGACC 61.999 66.667 0.00 0.00 38.60 4.79
206 207 4.419921 GGGACGCCGACCCCAATT 62.420 66.667 13.94 0.00 42.24 2.32
207 208 3.131478 GGACGCCGACCCCAATTG 61.131 66.667 0.00 0.00 0.00 2.32
208 209 2.359478 GACGCCGACCCCAATTGT 60.359 61.111 4.43 0.00 0.00 2.71
209 210 2.671619 ACGCCGACCCCAATTGTG 60.672 61.111 4.43 0.00 0.00 3.33
210 211 3.439540 CGCCGACCCCAATTGTGG 61.440 66.667 5.29 5.29 45.53 4.17
211 212 2.282887 GCCGACCCCAATTGTGGT 60.283 61.111 12.85 12.85 44.30 4.16
212 213 1.001887 GCCGACCCCAATTGTGGTA 60.002 57.895 12.97 0.00 44.30 3.25
213 214 1.029947 GCCGACCCCAATTGTGGTAG 61.030 60.000 12.97 12.56 44.30 3.18
214 215 0.326927 CCGACCCCAATTGTGGTAGT 59.673 55.000 12.97 3.96 44.30 2.73
215 216 1.271707 CCGACCCCAATTGTGGTAGTT 60.272 52.381 12.97 0.00 44.30 2.24
216 217 2.510613 CGACCCCAATTGTGGTAGTTT 58.489 47.619 12.97 0.00 44.30 2.66
217 218 2.888414 CGACCCCAATTGTGGTAGTTTT 59.112 45.455 12.97 0.00 44.30 2.43
218 219 3.319689 CGACCCCAATTGTGGTAGTTTTT 59.680 43.478 12.97 0.00 44.30 1.94
235 236 3.518634 TTTTTGTCAAACACTCCAGCC 57.481 42.857 0.00 0.00 0.00 4.85
236 237 1.398692 TTTGTCAAACACTCCAGCCC 58.601 50.000 0.00 0.00 0.00 5.19
237 238 0.257328 TTGTCAAACACTCCAGCCCA 59.743 50.000 0.00 0.00 0.00 5.36
238 239 0.465460 TGTCAAACACTCCAGCCCAC 60.465 55.000 0.00 0.00 0.00 4.61
239 240 1.150536 TCAAACACTCCAGCCCACC 59.849 57.895 0.00 0.00 0.00 4.61
240 241 1.903404 CAAACACTCCAGCCCACCC 60.903 63.158 0.00 0.00 0.00 4.61
241 242 3.146828 AAACACTCCAGCCCACCCC 62.147 63.158 0.00 0.00 0.00 4.95
242 243 4.918360 ACACTCCAGCCCACCCCA 62.918 66.667 0.00 0.00 0.00 4.96
243 244 4.039092 CACTCCAGCCCACCCCAG 62.039 72.222 0.00 0.00 0.00 4.45
246 247 4.346889 TCCAGCCCACCCCAGCTA 62.347 66.667 0.00 0.00 37.18 3.32
247 248 4.115199 CCAGCCCACCCCAGCTAC 62.115 72.222 0.00 0.00 37.18 3.58
248 249 4.115199 CAGCCCACCCCAGCTACC 62.115 72.222 0.00 0.00 37.18 3.18
251 252 2.364579 CCCACCCCAGCTACCGTA 60.365 66.667 0.00 0.00 0.00 4.02
265 329 3.823330 CGTAAGTCCTCCGCCGCT 61.823 66.667 0.00 0.00 0.00 5.52
275 339 4.309950 CCGCCGCTATACACCCCC 62.310 72.222 0.00 0.00 0.00 5.40
301 365 4.815973 TAGCCCTCCACCGCCCAT 62.816 66.667 0.00 0.00 0.00 4.00
327 391 3.549433 TACCCCAAGTCCTCCGCCA 62.549 63.158 0.00 0.00 0.00 5.69
359 639 2.592993 GCACACCTAGCCCTCCACA 61.593 63.158 0.00 0.00 0.00 4.17
385 698 1.304134 CCTAGCCCACCCACCAAAC 60.304 63.158 0.00 0.00 0.00 2.93
391 704 1.147376 CCACCCACCAAACGACTCA 59.853 57.895 0.00 0.00 0.00 3.41
396 709 1.495584 CCACCAAACGACTCACGGTG 61.496 60.000 0.56 0.56 42.92 4.94
422 735 2.906389 ACTACAAGAAGTCATGCCCTCA 59.094 45.455 0.00 0.00 0.00 3.86
438 751 1.134530 CTCACGCGGAAGACATCGTC 61.135 60.000 12.47 0.00 32.38 4.20
440 753 1.443872 ACGCGGAAGACATCGTCAC 60.444 57.895 12.47 0.00 34.60 3.67
442 755 1.154093 GCGGAAGACATCGTCACGA 60.154 57.895 0.28 0.28 41.13 4.35
463 776 2.094762 AGTCGTAAGTGATGCCAACC 57.905 50.000 0.00 0.00 39.48 3.77
465 778 0.981183 TCGTAAGTGATGCCAACCCT 59.019 50.000 0.00 0.00 39.48 4.34
504 817 0.970937 TCCGCCTCTTCTTCCACGAT 60.971 55.000 0.00 0.00 0.00 3.73
507 820 1.673033 CGCCTCTTCTTCCACGATTGT 60.673 52.381 0.00 0.00 0.00 2.71
524 837 4.267928 CGATTGTTTCGTCAGGGTAAGATC 59.732 45.833 0.00 0.00 43.01 2.75
526 839 4.188247 TGTTTCGTCAGGGTAAGATCTG 57.812 45.455 0.00 0.00 0.00 2.90
527 840 3.830178 TGTTTCGTCAGGGTAAGATCTGA 59.170 43.478 0.00 0.00 37.65 3.27
528 841 4.282449 TGTTTCGTCAGGGTAAGATCTGAA 59.718 41.667 0.00 0.00 41.07 3.02
529 842 5.046591 TGTTTCGTCAGGGTAAGATCTGAAT 60.047 40.000 0.00 0.00 41.07 2.57
530 843 4.655762 TCGTCAGGGTAAGATCTGAATG 57.344 45.455 0.00 0.00 41.07 2.67
531 844 4.278310 TCGTCAGGGTAAGATCTGAATGA 58.722 43.478 0.00 0.00 41.07 2.57
532 845 4.098044 TCGTCAGGGTAAGATCTGAATGAC 59.902 45.833 0.00 6.39 41.07 3.06
535 848 5.032846 TCAGGGTAAGATCTGAATGACCTT 58.967 41.667 0.00 0.00 37.11 3.50
536 849 5.129485 TCAGGGTAAGATCTGAATGACCTTC 59.871 44.000 0.00 0.00 37.11 3.46
538 851 5.669447 AGGGTAAGATCTGAATGACCTTCAT 59.331 40.000 0.00 0.00 42.87 2.57
540 853 6.408548 GGGTAAGATCTGAATGACCTTCATCA 60.409 42.308 0.00 0.00 42.87 3.07
542 855 7.172875 GGTAAGATCTGAATGACCTTCATCATG 59.827 40.741 0.00 0.00 42.87 3.07
543 856 6.249911 AGATCTGAATGACCTTCATCATGT 57.750 37.500 0.00 0.00 42.87 3.21
544 857 6.056236 AGATCTGAATGACCTTCATCATGTG 58.944 40.000 0.00 0.00 42.87 3.21
545 858 5.169992 TCTGAATGACCTTCATCATGTGT 57.830 39.130 0.00 0.00 42.87 3.72
548 861 6.988580 TCTGAATGACCTTCATCATGTGTATC 59.011 38.462 0.00 0.00 42.87 2.24
550 863 7.341030 TGAATGACCTTCATCATGTGTATCTT 58.659 34.615 0.00 0.00 38.97 2.40
551 864 7.830697 TGAATGACCTTCATCATGTGTATCTTT 59.169 33.333 0.00 0.00 38.97 2.52
552 865 8.585471 AATGACCTTCATCATGTGTATCTTTT 57.415 30.769 0.00 0.00 39.32 2.27
553 866 8.585471 ATGACCTTCATCATGTGTATCTTTTT 57.415 30.769 0.00 0.00 37.93 1.94
568 881 3.603144 TTTTTCATGCAAAGGCCGG 57.397 47.368 0.00 0.00 40.13 6.13
569 882 0.034616 TTTTTCATGCAAAGGCCGGG 59.965 50.000 2.18 0.00 40.13 5.73
573 886 2.117206 ATGCAAAGGCCGGGACAA 59.883 55.556 0.92 0.00 40.13 3.18
574 887 1.978617 ATGCAAAGGCCGGGACAAG 60.979 57.895 0.92 0.00 40.13 3.16
575 888 2.597510 GCAAAGGCCGGGACAAGT 60.598 61.111 0.92 0.00 0.00 3.16
578 891 0.879090 CAAAGGCCGGGACAAGTTAC 59.121 55.000 0.92 0.00 0.00 2.50
579 892 0.769247 AAAGGCCGGGACAAGTTACT 59.231 50.000 0.92 0.00 0.00 2.24
582 895 0.035739 GGCCGGGACAAGTTACTTGA 59.964 55.000 28.94 0.00 43.42 3.02
583 896 1.543871 GGCCGGGACAAGTTACTTGAA 60.544 52.381 28.94 0.00 43.42 2.69
584 897 2.223745 GCCGGGACAAGTTACTTGAAA 58.776 47.619 28.94 0.00 43.42 2.69
601 914 6.139672 CTTGAAAAGTGTGTTGTGAAACAC 57.860 37.500 13.45 13.45 43.60 3.32
628 941 1.001020 TGATGTGTGTGGATGGGGC 60.001 57.895 0.00 0.00 0.00 5.80
637 950 3.461458 TGTGTGGATGGGGCTCATAATTA 59.539 43.478 0.00 0.00 35.97 1.40
641 954 5.539574 TGTGGATGGGGCTCATAATTATTTG 59.460 40.000 0.00 0.00 35.97 2.32
700 1013 2.983592 GACCCCAACAGCCCAACG 60.984 66.667 0.00 0.00 0.00 4.10
716 1029 2.154462 CAACGGAGAAGTTTGGCATCT 58.846 47.619 0.00 0.00 30.96 2.90
769 1082 2.684881 CGATGTTGCCAAGGCTAGAATT 59.315 45.455 12.96 0.00 42.51 2.17
771 1084 1.545582 TGTTGCCAAGGCTAGAATTGC 59.454 47.619 12.96 0.00 42.51 3.56
926 1239 1.839994 TCATGAATGAGACACTCCCCC 59.160 52.381 0.00 0.00 32.11 5.40
991 1306 3.170362 CCTCCAAGGGGCTGACAA 58.830 61.111 0.00 0.00 0.00 3.18
1043 1358 3.045634 ACACCATCGGAATCTCCCATTA 58.954 45.455 0.00 0.00 31.13 1.90
1063 1390 1.036707 CTCGTCCTTCTCCTCATCCC 58.963 60.000 0.00 0.00 0.00 3.85
1093 1420 1.455849 CTCAACCCAAGCACCTCCA 59.544 57.895 0.00 0.00 0.00 3.86
1158 1485 4.978099 AGTCAGACACAGGAAATGACAAT 58.022 39.130 2.66 0.00 42.11 2.71
1416 5117 0.033504 AATGTGGCGTCGTCAACTCT 59.966 50.000 0.00 0.00 0.00 3.24
1438 5147 0.752054 AACCTACCCGTTCACGTCAA 59.248 50.000 0.00 0.00 37.74 3.18
1441 5150 1.337447 CCTACCCGTTCACGTCAACAT 60.337 52.381 2.50 0.00 37.74 2.71
1479 5190 4.115516 TGAGATTGAGAATAAGCTCACGC 58.884 43.478 2.69 0.00 45.14 5.34
1500 5211 3.489416 GCCTTTTTCGTGTTTCCATTGAC 59.511 43.478 0.00 0.00 0.00 3.18
1555 5280 9.589111 GTAATTTGTTTTTCCCTCTTGTTGTAA 57.411 29.630 0.00 0.00 0.00 2.41
1570 5295 9.959775 CTCTTGTTGTAATTATTCTCTCGTTTC 57.040 33.333 0.00 0.00 0.00 2.78
1598 5323 5.826737 TCATTGTGGCATTTTGGTTTTCAAT 59.173 32.000 0.00 0.00 34.98 2.57
1599 5324 6.994496 TCATTGTGGCATTTTGGTTTTCAATA 59.006 30.769 0.00 0.00 34.98 1.90
1709 5435 4.527564 GCTCAAATATGTATCGGTTGCAC 58.472 43.478 0.00 0.00 0.00 4.57
1733 5459 4.946157 CCAAGGAGAATTATTGTGTGCTCT 59.054 41.667 0.00 0.00 0.00 4.09
1734 5460 5.416952 CCAAGGAGAATTATTGTGTGCTCTT 59.583 40.000 0.00 0.00 0.00 2.85
1736 5462 5.809001 AGGAGAATTATTGTGTGCTCTTCA 58.191 37.500 0.00 0.00 0.00 3.02
1737 5463 6.240894 AGGAGAATTATTGTGTGCTCTTCAA 58.759 36.000 0.00 0.00 0.00 2.69
1750 5476 9.195411 TGTGTGCTCTTCAAAATGAATTTAATC 57.805 29.630 0.00 0.00 35.59 1.75
1904 5891 4.332268 GCACAACTGAAAATTTGCCAAGAA 59.668 37.500 0.00 0.00 0.00 2.52
1920 5907 8.691661 TTGCCAAGAAAAGTAGAGAGTAAAAT 57.308 30.769 0.00 0.00 0.00 1.82
1928 5915 6.830114 AAGTAGAGAGTAAAATATGTGCGC 57.170 37.500 0.00 0.00 0.00 6.09
1931 5918 4.759782 AGAGAGTAAAATATGTGCGCTGT 58.240 39.130 9.73 0.00 0.00 4.40
1933 5920 3.063997 AGAGTAAAATATGTGCGCTGTGC 59.936 43.478 9.73 6.19 46.70 4.57
2026 6856 0.529378 CTGGAATTTGCAGCCACCTC 59.471 55.000 4.91 0.00 0.00 3.85
2040 6870 1.971357 CCACCTCCACTCTACACACTT 59.029 52.381 0.00 0.00 0.00 3.16
2044 6874 2.894126 CCTCCACTCTACACACTTCAGT 59.106 50.000 0.00 0.00 0.00 3.41
2072 6902 6.352222 GGAAGAAGGAAATGAGACCATGAGTA 60.352 42.308 0.00 0.00 32.36 2.59
2102 6932 5.295292 GCTGCTATTGCCGACAATATGATAT 59.705 40.000 4.55 0.00 45.41 1.63
2110 6940 6.192044 TGCCGACAATATGATATACTAGGGA 58.808 40.000 0.00 0.00 0.00 4.20
2155 6987 1.296002 AAATAAGCCGTTCCCTCCCT 58.704 50.000 0.00 0.00 0.00 4.20
2224 7056 2.738013 ACGGGCAAGAACTAGTGTAC 57.262 50.000 0.00 0.00 0.00 2.90
2249 7082 6.625081 CGTGAGGAAACACTGACATACTATCA 60.625 42.308 0.00 0.00 38.47 2.15
2265 7098 2.592102 ATCAACAAGGGCAGTGTCAT 57.408 45.000 0.00 0.00 0.00 3.06
2285 7118 1.357420 TGGCATGACAACCAAGGGTAT 59.643 47.619 0.00 0.00 33.12 2.73
2288 7121 2.166254 GCATGACAACCAAGGGTATTGG 59.834 50.000 0.00 5.10 44.91 3.16
2296 7129 1.255882 CAAGGGTATTGGTGCTGCAA 58.744 50.000 2.77 0.00 0.00 4.08
2336 7169 1.152984 TCTATGCATGGGGTTGCGG 60.153 57.895 10.16 0.00 45.77 5.69
2337 7170 1.152984 CTATGCATGGGGTTGCGGA 60.153 57.895 10.16 0.00 45.77 5.54
2338 7171 1.447317 CTATGCATGGGGTTGCGGAC 61.447 60.000 10.16 0.00 45.77 4.79
2339 7172 2.203549 TATGCATGGGGTTGCGGACA 62.204 55.000 10.16 0.00 45.77 4.02
2340 7173 2.988684 GCATGGGGTTGCGGACAA 60.989 61.111 0.00 0.00 32.06 3.18
2341 7174 2.993471 GCATGGGGTTGCGGACAAG 61.993 63.158 0.00 0.00 36.16 3.16
2342 7175 1.303236 CATGGGGTTGCGGACAAGA 60.303 57.895 0.00 0.00 36.16 3.02
2343 7176 1.002134 ATGGGGTTGCGGACAAGAG 60.002 57.895 0.00 0.00 36.16 2.85
2344 7177 2.359975 GGGGTTGCGGACAAGAGG 60.360 66.667 0.00 0.00 36.16 3.69
2345 7178 3.056328 GGGTTGCGGACAAGAGGC 61.056 66.667 0.00 0.00 36.16 4.70
2346 7179 3.056328 GGTTGCGGACAAGAGGCC 61.056 66.667 0.00 0.00 36.16 5.19
2347 7180 3.056328 GTTGCGGACAAGAGGCCC 61.056 66.667 0.00 0.00 36.16 5.80
2348 7181 3.565214 TTGCGGACAAGAGGCCCA 61.565 61.111 0.00 0.00 0.00 5.36
2349 7182 2.905996 TTGCGGACAAGAGGCCCAT 61.906 57.895 0.00 0.00 0.00 4.00
2350 7183 2.825836 GCGGACAAGAGGCCCATG 60.826 66.667 0.00 0.00 0.00 3.66
2351 7184 2.124570 CGGACAAGAGGCCCATGG 60.125 66.667 4.14 4.14 0.00 3.66
2352 7185 2.669133 CGGACAAGAGGCCCATGGA 61.669 63.158 15.22 0.00 0.00 3.41
2353 7186 1.225704 GGACAAGAGGCCCATGGAG 59.774 63.158 15.22 4.39 0.00 3.86
2354 7187 1.274703 GGACAAGAGGCCCATGGAGA 61.275 60.000 15.22 0.00 0.00 3.71
2355 7188 0.107459 GACAAGAGGCCCATGGAGAC 60.107 60.000 15.22 5.52 0.00 3.36
2356 7189 1.153289 CAAGAGGCCCATGGAGACG 60.153 63.158 15.22 0.00 0.00 4.18
2357 7190 1.306141 AAGAGGCCCATGGAGACGA 60.306 57.895 15.22 0.00 0.00 4.20
2358 7191 1.617947 AAGAGGCCCATGGAGACGAC 61.618 60.000 15.22 0.00 0.00 4.34
2359 7192 3.432051 GAGGCCCATGGAGACGACG 62.432 68.421 15.22 0.00 0.00 5.12
2360 7193 4.530857 GGCCCATGGAGACGACGG 62.531 72.222 15.22 0.00 0.00 4.79
2361 7194 3.458163 GCCCATGGAGACGACGGA 61.458 66.667 15.22 0.00 0.00 4.69
2362 7195 2.808315 CCCATGGAGACGACGGAG 59.192 66.667 15.22 0.00 0.00 4.63
2363 7196 1.753078 CCCATGGAGACGACGGAGA 60.753 63.158 15.22 0.00 0.00 3.71
2364 7197 1.109920 CCCATGGAGACGACGGAGAT 61.110 60.000 15.22 0.00 0.00 2.75
2365 7198 0.031314 CCATGGAGACGACGGAGATG 59.969 60.000 5.56 0.00 0.00 2.90
2366 7199 0.031314 CATGGAGACGACGGAGATGG 59.969 60.000 0.00 0.00 0.00 3.51
2367 7200 0.106669 ATGGAGACGACGGAGATGGA 60.107 55.000 0.00 0.00 0.00 3.41
2368 7201 0.748367 TGGAGACGACGGAGATGGAG 60.748 60.000 0.00 0.00 0.00 3.86
2369 7202 1.448922 GGAGACGACGGAGATGGAGG 61.449 65.000 0.00 0.00 0.00 4.30
2370 7203 2.065906 GAGACGACGGAGATGGAGGC 62.066 65.000 0.00 0.00 0.00 4.70
2371 7204 3.471244 GACGACGGAGATGGAGGCG 62.471 68.421 0.00 0.00 0.00 5.52
2372 7205 4.271816 CGACGGAGATGGAGGCGG 62.272 72.222 0.00 0.00 0.00 6.13
2373 7206 2.833582 GACGGAGATGGAGGCGGA 60.834 66.667 0.00 0.00 0.00 5.54
2374 7207 2.835431 ACGGAGATGGAGGCGGAG 60.835 66.667 0.00 0.00 0.00 4.63
2375 7208 2.519541 CGGAGATGGAGGCGGAGA 60.520 66.667 0.00 0.00 0.00 3.71
2376 7209 2.560119 CGGAGATGGAGGCGGAGAG 61.560 68.421 0.00 0.00 0.00 3.20
2377 7210 1.152652 GGAGATGGAGGCGGAGAGA 60.153 63.158 0.00 0.00 0.00 3.10
2378 7211 0.757188 GGAGATGGAGGCGGAGAGAA 60.757 60.000 0.00 0.00 0.00 2.87
2379 7212 0.673437 GAGATGGAGGCGGAGAGAAG 59.327 60.000 0.00 0.00 0.00 2.85
2380 7213 0.758685 AGATGGAGGCGGAGAGAAGG 60.759 60.000 0.00 0.00 0.00 3.46
2381 7214 2.376228 GATGGAGGCGGAGAGAAGGC 62.376 65.000 0.00 0.00 0.00 4.35
2382 7215 4.214327 GGAGGCGGAGAGAAGGCG 62.214 72.222 0.00 0.00 38.03 5.52
2383 7216 4.214327 GAGGCGGAGAGAAGGCGG 62.214 72.222 0.00 0.00 38.03 6.13
2386 7219 3.771160 GCGGAGAGAAGGCGGGAA 61.771 66.667 0.00 0.00 0.00 3.97
2387 7220 2.184579 CGGAGAGAAGGCGGGAAC 59.815 66.667 0.00 0.00 0.00 3.62
2405 7238 2.663188 GGGAGCTGCGCGATAAGG 60.663 66.667 12.10 0.00 0.00 2.69
2406 7239 3.341835 GGAGCTGCGCGATAAGGC 61.342 66.667 12.10 5.64 0.00 4.35
2407 7240 3.341835 GAGCTGCGCGATAAGGCC 61.342 66.667 12.10 0.00 0.00 5.19
2408 7241 4.161295 AGCTGCGCGATAAGGCCA 62.161 61.111 12.10 0.00 0.00 5.36
2409 7242 3.202001 GCTGCGCGATAAGGCCAA 61.202 61.111 12.10 0.00 0.00 4.52
2410 7243 3.017323 CTGCGCGATAAGGCCAAG 58.983 61.111 12.10 0.00 0.00 3.61
2411 7244 2.513666 TGCGCGATAAGGCCAAGG 60.514 61.111 12.10 0.00 0.00 3.61
2412 7245 3.953887 GCGCGATAAGGCCAAGGC 61.954 66.667 12.10 1.52 41.06 4.35
2413 7246 2.203070 CGCGATAAGGCCAAGGCT 60.203 61.111 5.01 0.00 41.24 4.58
2415 7248 1.776034 CGCGATAAGGCCAAGGCTTC 61.776 60.000 5.01 2.94 45.21 3.86
2416 7249 0.464554 GCGATAAGGCCAAGGCTTCT 60.465 55.000 5.01 0.00 45.21 2.85
2417 7250 1.303309 CGATAAGGCCAAGGCTTCTG 58.697 55.000 5.01 0.00 45.21 3.02
2418 7251 1.028130 GATAAGGCCAAGGCTTCTGC 58.972 55.000 5.01 9.26 45.21 4.26
2419 7252 0.627986 ATAAGGCCAAGGCTTCTGCT 59.372 50.000 5.01 0.00 45.21 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.036429 AATGCCAGGGGAGACTCGC 62.036 63.158 10.97 10.97 34.16 5.03
13 14 1.153289 CAATGCCAGGGGAGACTCG 60.153 63.158 0.00 0.00 34.16 4.18
14 15 0.107459 GTCAATGCCAGGGGAGACTC 60.107 60.000 0.00 0.00 0.00 3.36
15 16 0.548682 AGTCAATGCCAGGGGAGACT 60.549 55.000 0.00 0.00 0.00 3.24
16 17 0.329596 AAGTCAATGCCAGGGGAGAC 59.670 55.000 0.00 0.00 0.00 3.36
17 18 1.075601 AAAGTCAATGCCAGGGGAGA 58.924 50.000 0.00 0.00 0.00 3.71
18 19 1.821136 GAAAAGTCAATGCCAGGGGAG 59.179 52.381 0.00 0.00 0.00 4.30
19 20 1.146774 TGAAAAGTCAATGCCAGGGGA 59.853 47.619 0.00 0.00 0.00 4.81
20 21 1.547372 CTGAAAAGTCAATGCCAGGGG 59.453 52.381 0.00 0.00 31.88 4.79
21 22 1.067354 GCTGAAAAGTCAATGCCAGGG 60.067 52.381 0.00 0.00 31.88 4.45
22 23 1.067354 GGCTGAAAAGTCAATGCCAGG 60.067 52.381 0.00 0.00 42.20 4.45
23 24 1.614903 TGGCTGAAAAGTCAATGCCAG 59.385 47.619 5.77 0.00 45.44 4.85
25 26 1.340889 TGTGGCTGAAAAGTCAATGCC 59.659 47.619 0.00 0.00 42.70 4.40
26 27 2.798976 TGTGGCTGAAAAGTCAATGC 57.201 45.000 0.00 0.00 31.88 3.56
27 28 4.482386 CTGATGTGGCTGAAAAGTCAATG 58.518 43.478 0.00 0.00 31.88 2.82
28 29 3.057033 GCTGATGTGGCTGAAAAGTCAAT 60.057 43.478 0.00 0.00 31.88 2.57
29 30 2.294233 GCTGATGTGGCTGAAAAGTCAA 59.706 45.455 0.00 0.00 31.88 3.18
30 31 1.881973 GCTGATGTGGCTGAAAAGTCA 59.118 47.619 0.00 0.00 0.00 3.41
31 32 1.200948 GGCTGATGTGGCTGAAAAGTC 59.799 52.381 0.00 0.00 0.00 3.01
32 33 1.251251 GGCTGATGTGGCTGAAAAGT 58.749 50.000 0.00 0.00 0.00 2.66
33 34 0.529378 GGGCTGATGTGGCTGAAAAG 59.471 55.000 0.00 0.00 0.00 2.27
34 35 0.112995 AGGGCTGATGTGGCTGAAAA 59.887 50.000 0.00 0.00 0.00 2.29
35 36 0.609957 CAGGGCTGATGTGGCTGAAA 60.610 55.000 0.00 0.00 0.00 2.69
36 37 1.001764 CAGGGCTGATGTGGCTGAA 60.002 57.895 0.00 0.00 0.00 3.02
37 38 1.919816 TCAGGGCTGATGTGGCTGA 60.920 57.895 0.00 0.00 34.14 4.26
38 39 1.748122 GTCAGGGCTGATGTGGCTG 60.748 63.158 0.00 0.00 42.18 4.85
39 40 2.673523 GTCAGGGCTGATGTGGCT 59.326 61.111 0.00 0.00 42.18 4.75
40 41 2.821366 CGTCAGGGCTGATGTGGC 60.821 66.667 0.00 0.00 42.18 5.01
41 42 2.124983 CCGTCAGGGCTGATGTGG 60.125 66.667 0.00 0.00 43.28 4.17
51 52 2.976494 AAACTGGCCAACCCGTCAGG 62.976 60.000 7.01 0.00 43.78 3.86
52 53 1.106944 AAAACTGGCCAACCCGTCAG 61.107 55.000 7.01 0.00 35.87 3.51
53 54 1.076632 AAAACTGGCCAACCCGTCA 60.077 52.632 7.01 0.00 35.87 4.35
54 55 1.362355 CAAAACTGGCCAACCCGTC 59.638 57.895 7.01 0.00 35.87 4.79
55 56 1.380650 ACAAAACTGGCCAACCCGT 60.381 52.632 7.01 0.00 35.87 5.28
56 57 1.362355 GACAAAACTGGCCAACCCG 59.638 57.895 7.01 0.00 35.87 5.28
57 58 0.389025 CTGACAAAACTGGCCAACCC 59.611 55.000 7.01 0.00 33.59 4.11
58 59 1.111277 ACTGACAAAACTGGCCAACC 58.889 50.000 7.01 0.00 0.00 3.77
59 60 2.959507 AACTGACAAAACTGGCCAAC 57.040 45.000 7.01 0.00 0.00 3.77
60 61 3.513515 AGAAAACTGACAAAACTGGCCAA 59.486 39.130 7.01 0.00 0.00 4.52
61 62 3.096092 AGAAAACTGACAAAACTGGCCA 58.904 40.909 4.71 4.71 0.00 5.36
62 63 3.119137 ACAGAAAACTGACAAAACTGGCC 60.119 43.478 0.00 0.00 0.00 5.36
63 64 4.110036 ACAGAAAACTGACAAAACTGGC 57.890 40.909 0.00 0.00 0.00 4.85
64 65 8.527567 TTTAAACAGAAAACTGACAAAACTGG 57.472 30.769 0.00 0.00 0.00 4.00
66 67 9.072294 CGATTTAAACAGAAAACTGACAAAACT 57.928 29.630 0.00 0.00 0.00 2.66
67 68 8.856247 ACGATTTAAACAGAAAACTGACAAAAC 58.144 29.630 0.00 0.00 0.00 2.43
68 69 8.973835 ACGATTTAAACAGAAAACTGACAAAA 57.026 26.923 0.00 0.00 0.00 2.44
69 70 8.455682 AGACGATTTAAACAGAAAACTGACAAA 58.544 29.630 0.00 0.00 0.00 2.83
70 71 7.981142 AGACGATTTAAACAGAAAACTGACAA 58.019 30.769 0.00 0.00 0.00 3.18
71 72 7.548196 AGACGATTTAAACAGAAAACTGACA 57.452 32.000 0.00 0.00 0.00 3.58
72 73 9.925268 TTTAGACGATTTAAACAGAAAACTGAC 57.075 29.630 0.00 0.00 0.00 3.51
75 76 9.726232 GGTTTTAGACGATTTAAACAGAAAACT 57.274 29.630 15.11 0.00 35.57 2.66
76 77 9.505995 TGGTTTTAGACGATTTAAACAGAAAAC 57.494 29.630 0.00 2.85 34.87 2.43
78 79 9.887406 GATGGTTTTAGACGATTTAAACAGAAA 57.113 29.630 0.00 0.00 33.33 2.52
79 80 9.058174 TGATGGTTTTAGACGATTTAAACAGAA 57.942 29.630 0.00 0.00 33.33 3.02
80 81 8.610248 TGATGGTTTTAGACGATTTAAACAGA 57.390 30.769 0.00 0.00 33.33 3.41
81 82 9.490663 GATGATGGTTTTAGACGATTTAAACAG 57.509 33.333 0.00 0.00 33.33 3.16
82 83 9.004717 TGATGATGGTTTTAGACGATTTAAACA 57.995 29.630 0.00 0.00 33.33 2.83
83 84 9.834628 TTGATGATGGTTTTAGACGATTTAAAC 57.165 29.630 0.00 0.00 0.00 2.01
84 85 9.834628 GTTGATGATGGTTTTAGACGATTTAAA 57.165 29.630 0.00 0.00 0.00 1.52
85 86 9.226606 AGTTGATGATGGTTTTAGACGATTTAA 57.773 29.630 0.00 0.00 0.00 1.52
86 87 8.664798 CAGTTGATGATGGTTTTAGACGATTTA 58.335 33.333 0.00 0.00 0.00 1.40
87 88 7.390440 TCAGTTGATGATGGTTTTAGACGATTT 59.610 33.333 0.00 0.00 31.12 2.17
88 89 6.878923 TCAGTTGATGATGGTTTTAGACGATT 59.121 34.615 0.00 0.00 31.12 3.34
89 90 6.406370 TCAGTTGATGATGGTTTTAGACGAT 58.594 36.000 0.00 0.00 31.12 3.73
90 91 5.789521 TCAGTTGATGATGGTTTTAGACGA 58.210 37.500 0.00 0.00 31.12 4.20
91 92 6.480524 TTCAGTTGATGATGGTTTTAGACG 57.519 37.500 0.00 0.00 37.89 4.18
92 93 7.805071 CAGTTTCAGTTGATGATGGTTTTAGAC 59.195 37.037 0.00 0.00 37.89 2.59
93 94 7.040478 CCAGTTTCAGTTGATGATGGTTTTAGA 60.040 37.037 0.00 0.00 37.89 2.10
94 95 7.086376 CCAGTTTCAGTTGATGATGGTTTTAG 58.914 38.462 0.00 0.00 37.89 1.85
95 96 6.549364 ACCAGTTTCAGTTGATGATGGTTTTA 59.451 34.615 6.76 0.00 43.34 1.52
96 97 5.363580 ACCAGTTTCAGTTGATGATGGTTTT 59.636 36.000 6.76 0.00 43.34 2.43
97 98 4.895297 ACCAGTTTCAGTTGATGATGGTTT 59.105 37.500 6.76 0.00 43.34 3.27
98 99 4.473444 ACCAGTTTCAGTTGATGATGGTT 58.527 39.130 6.76 0.00 43.34 3.67
99 100 4.104383 ACCAGTTTCAGTTGATGATGGT 57.896 40.909 6.76 6.76 41.82 3.55
100 101 5.248640 ACTACCAGTTTCAGTTGATGATGG 58.751 41.667 5.82 5.82 40.20 3.51
101 102 6.808008 AACTACCAGTTTCAGTTGATGATG 57.192 37.500 0.00 0.00 34.11 3.07
102 103 7.823745 AAAACTACCAGTTTCAGTTGATGAT 57.176 32.000 4.86 0.00 46.78 2.45
103 104 7.639113 AAAAACTACCAGTTTCAGTTGATGA 57.361 32.000 4.86 0.00 46.78 2.92
104 105 8.076178 CCTAAAAACTACCAGTTTCAGTTGATG 58.924 37.037 4.86 0.00 46.78 3.07
105 106 7.230712 CCCTAAAAACTACCAGTTTCAGTTGAT 59.769 37.037 4.86 0.00 46.78 2.57
106 107 6.544564 CCCTAAAAACTACCAGTTTCAGTTGA 59.455 38.462 4.86 0.00 46.78 3.18
107 108 6.544564 TCCCTAAAAACTACCAGTTTCAGTTG 59.455 38.462 4.86 1.44 46.78 3.16
108 109 6.544931 GTCCCTAAAAACTACCAGTTTCAGTT 59.455 38.462 4.86 0.00 46.78 3.16
109 110 6.060136 GTCCCTAAAAACTACCAGTTTCAGT 58.940 40.000 4.86 0.00 46.78 3.41
110 111 6.059484 TGTCCCTAAAAACTACCAGTTTCAG 58.941 40.000 4.86 5.81 46.78 3.02
111 112 6.003859 TGTCCCTAAAAACTACCAGTTTCA 57.996 37.500 4.86 0.00 46.78 2.69
112 113 6.947644 TTGTCCCTAAAAACTACCAGTTTC 57.052 37.500 4.86 0.00 46.78 2.78
114 115 7.907841 AATTTGTCCCTAAAAACTACCAGTT 57.092 32.000 0.00 0.00 40.80 3.16
115 116 8.999905 TTAATTTGTCCCTAAAAACTACCAGT 57.000 30.769 0.00 0.00 0.00 4.00
116 117 9.292195 TCTTAATTTGTCCCTAAAAACTACCAG 57.708 33.333 0.00 0.00 0.00 4.00
117 118 9.643735 TTCTTAATTTGTCCCTAAAAACTACCA 57.356 29.630 0.00 0.00 0.00 3.25
125 126 9.699703 CCGAAAATTTCTTAATTTGTCCCTAAA 57.300 29.630 4.09 0.00 41.83 1.85
126 127 8.862085 ACCGAAAATTTCTTAATTTGTCCCTAA 58.138 29.630 4.09 0.00 41.83 2.69
127 128 8.411991 ACCGAAAATTTCTTAATTTGTCCCTA 57.588 30.769 4.09 0.00 41.83 3.53
128 129 7.297936 ACCGAAAATTTCTTAATTTGTCCCT 57.702 32.000 4.09 0.00 41.83 4.20
129 130 8.301720 ACTACCGAAAATTTCTTAATTTGTCCC 58.698 33.333 4.09 0.00 41.83 4.46
130 131 9.687210 AACTACCGAAAATTTCTTAATTTGTCC 57.313 29.630 4.09 0.00 41.83 4.02
135 136 9.401873 CCGAAAACTACCGAAAATTTCTTAATT 57.598 29.630 4.09 0.00 35.49 1.40
136 137 8.570488 ACCGAAAACTACCGAAAATTTCTTAAT 58.430 29.630 4.09 0.00 0.00 1.40
137 138 7.929159 ACCGAAAACTACCGAAAATTTCTTAA 58.071 30.769 4.09 0.00 0.00 1.85
138 139 7.226325 TGACCGAAAACTACCGAAAATTTCTTA 59.774 33.333 4.09 0.00 0.00 2.10
139 140 6.038492 TGACCGAAAACTACCGAAAATTTCTT 59.962 34.615 4.09 0.00 0.00 2.52
140 141 5.528320 TGACCGAAAACTACCGAAAATTTCT 59.472 36.000 4.09 0.00 0.00 2.52
141 142 5.750650 TGACCGAAAACTACCGAAAATTTC 58.249 37.500 0.00 0.00 0.00 2.17
142 143 5.754543 TGACCGAAAACTACCGAAAATTT 57.245 34.783 0.00 0.00 0.00 1.82
143 144 5.754543 TTGACCGAAAACTACCGAAAATT 57.245 34.783 0.00 0.00 0.00 1.82
144 145 5.754543 TTTGACCGAAAACTACCGAAAAT 57.245 34.783 0.00 0.00 0.00 1.82
145 146 5.557891 TTTTGACCGAAAACTACCGAAAA 57.442 34.783 0.00 0.00 0.00 2.29
146 147 5.754543 ATTTTGACCGAAAACTACCGAAA 57.245 34.783 0.00 0.00 36.35 3.46
147 148 5.754543 AATTTTGACCGAAAACTACCGAA 57.245 34.783 0.00 0.00 36.35 4.30
148 149 5.754543 AAATTTTGACCGAAAACTACCGA 57.245 34.783 0.00 0.00 36.35 4.69
149 150 5.972382 TGAAAATTTTGACCGAAAACTACCG 59.028 36.000 8.47 0.00 36.35 4.02
150 151 7.758613 TTGAAAATTTTGACCGAAAACTACC 57.241 32.000 8.47 0.00 36.35 3.18
151 152 8.865978 ACTTTGAAAATTTTGACCGAAAACTAC 58.134 29.630 8.47 0.00 36.35 2.73
152 153 8.865001 CACTTTGAAAATTTTGACCGAAAACTA 58.135 29.630 8.47 0.00 36.35 2.24
153 154 7.623297 GCACTTTGAAAATTTTGACCGAAAACT 60.623 33.333 8.47 0.00 36.35 2.66
154 155 6.464519 GCACTTTGAAAATTTTGACCGAAAAC 59.535 34.615 8.47 0.00 36.35 2.43
155 156 6.370166 AGCACTTTGAAAATTTTGACCGAAAA 59.630 30.769 8.47 0.00 37.93 2.29
156 157 5.872070 AGCACTTTGAAAATTTTGACCGAAA 59.128 32.000 8.47 0.00 0.00 3.46
157 158 5.415221 AGCACTTTGAAAATTTTGACCGAA 58.585 33.333 8.47 0.00 0.00 4.30
158 159 5.004922 AGCACTTTGAAAATTTTGACCGA 57.995 34.783 8.47 0.00 0.00 4.69
159 160 5.977129 ACTAGCACTTTGAAAATTTTGACCG 59.023 36.000 8.47 0.00 0.00 4.79
160 161 7.706607 AGAACTAGCACTTTGAAAATTTTGACC 59.293 33.333 8.47 0.00 0.00 4.02
161 162 8.534778 CAGAACTAGCACTTTGAAAATTTTGAC 58.465 33.333 8.47 0.00 0.00 3.18
162 163 8.250332 ACAGAACTAGCACTTTGAAAATTTTGA 58.750 29.630 8.47 0.00 0.00 2.69
163 164 8.323140 CACAGAACTAGCACTTTGAAAATTTTG 58.677 33.333 8.47 0.00 0.00 2.44
164 165 7.492344 CCACAGAACTAGCACTTTGAAAATTTT 59.508 33.333 2.28 2.28 0.00 1.82
165 166 6.980397 CCACAGAACTAGCACTTTGAAAATTT 59.020 34.615 0.00 0.00 0.00 1.82
166 167 6.461509 CCCACAGAACTAGCACTTTGAAAATT 60.462 38.462 0.00 0.00 0.00 1.82
167 168 5.010012 CCCACAGAACTAGCACTTTGAAAAT 59.990 40.000 0.00 0.00 0.00 1.82
168 169 4.338118 CCCACAGAACTAGCACTTTGAAAA 59.662 41.667 0.00 0.00 0.00 2.29
169 170 3.882888 CCCACAGAACTAGCACTTTGAAA 59.117 43.478 0.00 0.00 0.00 2.69
170 171 3.135712 TCCCACAGAACTAGCACTTTGAA 59.864 43.478 0.00 0.00 0.00 2.69
171 172 2.703536 TCCCACAGAACTAGCACTTTGA 59.296 45.455 0.00 0.00 0.00 2.69
172 173 2.808543 GTCCCACAGAACTAGCACTTTG 59.191 50.000 0.00 0.00 0.00 2.77
173 174 2.548067 CGTCCCACAGAACTAGCACTTT 60.548 50.000 0.00 0.00 0.00 2.66
174 175 1.000955 CGTCCCACAGAACTAGCACTT 59.999 52.381 0.00 0.00 0.00 3.16
175 176 0.603569 CGTCCCACAGAACTAGCACT 59.396 55.000 0.00 0.00 0.00 4.40
176 177 1.014564 GCGTCCCACAGAACTAGCAC 61.015 60.000 0.00 0.00 0.00 4.40
177 178 1.292223 GCGTCCCACAGAACTAGCA 59.708 57.895 0.00 0.00 0.00 3.49
178 179 1.448013 GGCGTCCCACAGAACTAGC 60.448 63.158 0.00 0.00 0.00 3.42
179 180 1.153823 CGGCGTCCCACAGAACTAG 60.154 63.158 0.00 0.00 0.00 2.57
180 181 1.604308 TCGGCGTCCCACAGAACTA 60.604 57.895 6.85 0.00 0.00 2.24
181 182 2.915659 TCGGCGTCCCACAGAACT 60.916 61.111 6.85 0.00 0.00 3.01
182 183 2.737376 GTCGGCGTCCCACAGAAC 60.737 66.667 6.85 0.00 0.00 3.01
183 184 3.998672 GGTCGGCGTCCCACAGAA 61.999 66.667 12.28 0.00 0.00 3.02
189 190 4.419921 AATTGGGGTCGGCGTCCC 62.420 66.667 30.36 30.36 43.90 4.46
190 191 3.131478 CAATTGGGGTCGGCGTCC 61.131 66.667 14.92 14.92 0.00 4.79
191 192 2.359478 ACAATTGGGGTCGGCGTC 60.359 61.111 10.83 0.00 0.00 5.19
192 193 2.671619 CACAATTGGGGTCGGCGT 60.672 61.111 10.83 0.00 0.00 5.68
193 194 3.439540 CCACAATTGGGGTCGGCG 61.440 66.667 19.31 0.00 39.57 6.46
215 216 2.167487 GGGCTGGAGTGTTTGACAAAAA 59.833 45.455 1.27 0.00 0.00 1.94
216 217 1.754226 GGGCTGGAGTGTTTGACAAAA 59.246 47.619 1.27 0.00 0.00 2.44
217 218 1.341482 TGGGCTGGAGTGTTTGACAAA 60.341 47.619 0.00 0.00 0.00 2.83
218 219 0.257328 TGGGCTGGAGTGTTTGACAA 59.743 50.000 0.00 0.00 0.00 3.18
219 220 0.465460 GTGGGCTGGAGTGTTTGACA 60.465 55.000 0.00 0.00 0.00 3.58
220 221 1.172812 GGTGGGCTGGAGTGTTTGAC 61.173 60.000 0.00 0.00 0.00 3.18
221 222 1.150536 GGTGGGCTGGAGTGTTTGA 59.849 57.895 0.00 0.00 0.00 2.69
222 223 1.903404 GGGTGGGCTGGAGTGTTTG 60.903 63.158 0.00 0.00 0.00 2.93
223 224 2.520968 GGGTGGGCTGGAGTGTTT 59.479 61.111 0.00 0.00 0.00 2.83
224 225 3.580319 GGGGTGGGCTGGAGTGTT 61.580 66.667 0.00 0.00 0.00 3.32
225 226 4.918360 TGGGGTGGGCTGGAGTGT 62.918 66.667 0.00 0.00 0.00 3.55
226 227 4.039092 CTGGGGTGGGCTGGAGTG 62.039 72.222 0.00 0.00 0.00 3.51
229 230 4.346889 TAGCTGGGGTGGGCTGGA 62.347 66.667 0.00 0.00 39.31 3.86
230 231 4.115199 GTAGCTGGGGTGGGCTGG 62.115 72.222 0.00 0.00 39.31 4.85
231 232 4.115199 GGTAGCTGGGGTGGGCTG 62.115 72.222 0.00 0.00 39.31 4.85
234 235 1.968050 CTTACGGTAGCTGGGGTGGG 61.968 65.000 0.00 0.00 0.00 4.61
235 236 1.262640 ACTTACGGTAGCTGGGGTGG 61.263 60.000 0.00 0.00 0.00 4.61
236 237 0.175073 GACTTACGGTAGCTGGGGTG 59.825 60.000 0.00 0.00 0.00 4.61
237 238 0.974525 GGACTTACGGTAGCTGGGGT 60.975 60.000 0.00 0.00 0.00 4.95
238 239 0.686769 AGGACTTACGGTAGCTGGGG 60.687 60.000 0.00 0.00 0.00 4.96
239 240 0.745468 GAGGACTTACGGTAGCTGGG 59.255 60.000 0.00 0.00 0.00 4.45
240 241 0.745468 GGAGGACTTACGGTAGCTGG 59.255 60.000 0.00 0.00 0.00 4.85
241 242 0.381089 CGGAGGACTTACGGTAGCTG 59.619 60.000 0.00 0.00 0.00 4.24
242 243 1.382692 GCGGAGGACTTACGGTAGCT 61.383 60.000 0.00 0.00 0.00 3.32
243 244 1.065436 GCGGAGGACTTACGGTAGC 59.935 63.158 0.00 0.00 0.00 3.58
244 245 1.732308 GGCGGAGGACTTACGGTAG 59.268 63.158 0.00 0.00 0.00 3.18
245 246 2.114670 CGGCGGAGGACTTACGGTA 61.115 63.158 0.00 0.00 0.00 4.02
246 247 3.446570 CGGCGGAGGACTTACGGT 61.447 66.667 0.00 0.00 0.00 4.83
247 248 4.867599 GCGGCGGAGGACTTACGG 62.868 72.222 9.78 0.00 0.00 4.02
248 249 1.793134 ATAGCGGCGGAGGACTTACG 61.793 60.000 9.78 0.00 0.00 3.18
249 250 1.068679 GTATAGCGGCGGAGGACTTAC 60.069 57.143 9.78 0.00 0.00 2.34
250 251 1.242076 GTATAGCGGCGGAGGACTTA 58.758 55.000 9.78 0.00 0.00 2.24
251 252 0.754217 TGTATAGCGGCGGAGGACTT 60.754 55.000 9.78 0.00 0.00 3.01
265 329 0.252974 AGGTGTGCTGGGGGTGTATA 60.253 55.000 0.00 0.00 0.00 1.47
275 339 2.293318 TGGAGGGCTAGGTGTGCTG 61.293 63.158 0.00 0.00 0.00 4.41
301 365 1.615424 GACTTGGGGTAGCTGGGGA 60.615 63.158 0.00 0.00 0.00 4.81
327 391 1.916273 TGTGCTCGGGGTGTATGGT 60.916 57.895 0.00 0.00 0.00 3.55
385 698 1.028330 TAGTAGCCCACCGTGAGTCG 61.028 60.000 0.00 0.00 39.52 4.18
391 704 1.549170 CTTCTTGTAGTAGCCCACCGT 59.451 52.381 0.00 0.00 0.00 4.83
396 709 3.198872 GCATGACTTCTTGTAGTAGCCC 58.801 50.000 0.00 0.00 0.00 5.19
422 735 1.443872 GTGACGATGTCTTCCGCGT 60.444 57.895 4.92 0.00 39.99 6.01
440 753 2.333926 TGGCATCACTTACGACTTTCG 58.666 47.619 0.00 0.00 46.93 3.46
442 755 2.812011 GGTTGGCATCACTTACGACTTT 59.188 45.455 0.00 0.00 0.00 2.66
447 760 1.086696 CAGGGTTGGCATCACTTACG 58.913 55.000 0.00 0.00 0.00 3.18
450 763 4.850193 CCAGGGTTGGCATCACTT 57.150 55.556 0.00 0.00 37.73 3.16
468 781 0.533755 GGATGAGTCCGGCCTTGATG 60.534 60.000 0.00 0.00 34.13 3.07
489 802 3.123621 CGAAACAATCGTGGAAGAAGAGG 59.876 47.826 0.00 0.00 46.52 3.69
504 817 4.282449 TCAGATCTTACCCTGACGAAACAA 59.718 41.667 0.00 0.00 34.78 2.83
507 820 5.186992 TCATTCAGATCTTACCCTGACGAAA 59.813 40.000 0.00 0.00 38.95 3.46
526 839 7.798596 AAGATACACATGATGAAGGTCATTC 57.201 36.000 0.00 0.00 37.20 2.67
527 840 8.585471 AAAAGATACACATGATGAAGGTCATT 57.415 30.769 0.00 0.00 37.20 2.57
528 841 8.585471 AAAAAGATACACATGATGAAGGTCAT 57.415 30.769 0.00 0.00 40.34 3.06
550 863 0.034616 CCCGGCCTTTGCATGAAAAA 59.965 50.000 0.00 0.00 40.13 1.94
551 864 0.829602 TCCCGGCCTTTGCATGAAAA 60.830 50.000 0.00 0.00 40.13 2.29
552 865 1.228706 TCCCGGCCTTTGCATGAAA 60.229 52.632 0.00 0.00 40.13 2.69
553 866 1.976474 GTCCCGGCCTTTGCATGAA 60.976 57.895 0.00 0.00 40.13 2.57
554 867 2.361104 GTCCCGGCCTTTGCATGA 60.361 61.111 0.00 0.00 40.13 3.07
555 868 2.216750 CTTGTCCCGGCCTTTGCATG 62.217 60.000 0.00 0.00 40.13 4.06
556 869 1.978617 CTTGTCCCGGCCTTTGCAT 60.979 57.895 0.00 0.00 40.13 3.96
557 870 2.597217 CTTGTCCCGGCCTTTGCA 60.597 61.111 0.00 0.00 40.13 4.08
558 871 0.891904 TAACTTGTCCCGGCCTTTGC 60.892 55.000 0.00 0.00 0.00 3.68
559 872 0.879090 GTAACTTGTCCCGGCCTTTG 59.121 55.000 0.00 0.00 0.00 2.77
560 873 0.769247 AGTAACTTGTCCCGGCCTTT 59.231 50.000 0.00 0.00 0.00 3.11
561 874 0.769247 AAGTAACTTGTCCCGGCCTT 59.231 50.000 0.00 0.00 0.00 4.35
562 875 0.036306 CAAGTAACTTGTCCCGGCCT 59.964 55.000 0.00 0.00 36.79 5.19
563 876 0.035739 TCAAGTAACTTGTCCCGGCC 59.964 55.000 0.00 0.00 41.66 6.13
564 877 1.886886 TTCAAGTAACTTGTCCCGGC 58.113 50.000 0.00 0.00 41.66 6.13
565 878 3.881089 ACTTTTCAAGTAACTTGTCCCGG 59.119 43.478 0.00 0.00 41.66 5.73
566 879 4.334481 ACACTTTTCAAGTAACTTGTCCCG 59.666 41.667 0.00 0.00 41.66 5.14
567 880 5.124936 ACACACTTTTCAAGTAACTTGTCCC 59.875 40.000 0.00 0.00 41.66 4.46
568 881 6.190954 ACACACTTTTCAAGTAACTTGTCC 57.809 37.500 0.00 0.00 41.66 4.02
569 882 7.060633 CACAACACACTTTTCAAGTAACTTGTC 59.939 37.037 0.00 0.00 41.66 3.18
573 886 6.811253 TCACAACACACTTTTCAAGTAACT 57.189 33.333 0.00 0.00 40.46 2.24
574 887 7.380065 TGTTTCACAACACACTTTTCAAGTAAC 59.620 33.333 0.00 0.00 37.55 2.50
575 888 7.426410 TGTTTCACAACACACTTTTCAAGTAA 58.574 30.769 0.00 0.00 37.55 2.24
601 914 0.041926 CACACACATCAGCACACGTG 60.042 55.000 15.48 15.48 35.48 4.49
637 950 4.155280 GCGTCACAACCCTACAATACAAAT 59.845 41.667 0.00 0.00 0.00 2.32
641 954 2.004733 GGCGTCACAACCCTACAATAC 58.995 52.381 0.00 0.00 0.00 1.89
700 1013 2.386661 TCGAGATGCCAAACTTCTCC 57.613 50.000 0.00 0.00 43.44 3.71
716 1029 1.664649 CACGCAGGCTCAAGTTCGA 60.665 57.895 0.00 0.00 0.00 3.71
753 1066 0.810648 CGCAATTCTAGCCTTGGCAA 59.189 50.000 14.54 0.00 0.00 4.52
769 1082 3.059982 CTCCCACACTCCTTCGCA 58.940 61.111 0.00 0.00 0.00 5.10
771 1084 2.125912 CGCTCCCACACTCCTTCG 60.126 66.667 0.00 0.00 0.00 3.79
926 1239 4.101448 CGAAGGGAGGGGCAGGTG 62.101 72.222 0.00 0.00 0.00 4.00
991 1306 3.285371 GGTGACCATCTCGTCGGT 58.715 61.111 0.00 0.00 38.56 4.69
1043 1358 1.686741 GGGATGAGGAGAAGGACGAGT 60.687 57.143 0.00 0.00 0.00 4.18
1063 1390 2.182030 GTTGAGGCGGTCGGAGAG 59.818 66.667 0.00 0.00 36.95 3.20
1093 1420 2.647299 TCATTAGTGTGGGGTCCATGTT 59.353 45.455 0.00 0.00 35.28 2.71
1158 1485 1.188871 TGATGTCCTGCACCACCGTA 61.189 55.000 0.00 0.00 0.00 4.02
1416 5117 2.363680 TGACGTGAACGGGTAGGTTTAA 59.636 45.455 7.86 0.00 44.95 1.52
1438 5147 6.870971 TCTCAAGCGGTTAAAAACTTATGT 57.129 33.333 0.00 0.00 0.00 2.29
1441 5150 7.442969 TCTCAATCTCAAGCGGTTAAAAACTTA 59.557 33.333 0.00 0.00 0.00 2.24
1555 5280 9.778993 CACAATGAAATGAAACGAGAGAATAAT 57.221 29.630 0.00 0.00 0.00 1.28
1563 5288 3.899734 TGCCACAATGAAATGAAACGAG 58.100 40.909 0.00 0.00 0.00 4.18
1570 5295 5.692613 AACCAAAATGCCACAATGAAATG 57.307 34.783 0.00 0.00 0.00 2.32
1574 5299 4.774124 TGAAAACCAAAATGCCACAATGA 58.226 34.783 0.00 0.00 0.00 2.57
1686 5412 3.247411 TGCAACCGATACATATTTGAGCG 59.753 43.478 0.00 0.00 0.00 5.03
1709 5435 4.019174 AGCACACAATAATTCTCCTTGGG 58.981 43.478 0.00 0.00 0.00 4.12
1889 5616 8.138074 ACTCTCTACTTTTCTTGGCAAATTTTC 58.862 33.333 0.00 0.00 0.00 2.29
1904 5891 7.010552 CAGCGCACATATTTTACTCTCTACTTT 59.989 37.037 11.47 0.00 0.00 2.66
1928 5915 1.347707 TCCTCCCTAAGTGTTGCACAG 59.652 52.381 2.01 0.00 36.74 3.66
1931 5918 0.984230 CCTCCTCCCTAAGTGTTGCA 59.016 55.000 0.00 0.00 0.00 4.08
1933 5920 1.834263 CTCCCTCCTCCCTAAGTGTTG 59.166 57.143 0.00 0.00 0.00 3.33
1998 6828 4.309099 GCTGCAAATTCCAGAATGTTCAA 58.691 39.130 9.54 0.00 32.03 2.69
2040 6870 4.347876 TCTCATTTCCTTCTTCCACACTGA 59.652 41.667 0.00 0.00 0.00 3.41
2044 6874 3.394274 TGGTCTCATTTCCTTCTTCCACA 59.606 43.478 0.00 0.00 0.00 4.17
2072 6902 0.250234 TCGGCAATAGCAGCTCTGTT 59.750 50.000 0.00 0.00 44.61 3.16
2102 6932 6.073447 TGCCAAAAGAATTGATCCCTAGTA 57.927 37.500 0.00 0.00 0.00 1.82
2110 6940 8.449251 TTTTTAAAGCTGCCAAAAGAATTGAT 57.551 26.923 0.00 0.00 0.00 2.57
2155 6987 3.567397 GACTATCAGACCCCAGAAGCTA 58.433 50.000 0.00 0.00 0.00 3.32
2224 7056 3.914312 AGTATGTCAGTGTTTCCTCACG 58.086 45.455 0.00 0.00 42.40 4.35
2249 7082 1.181098 GCCATGACACTGCCCTTGTT 61.181 55.000 0.00 0.00 0.00 2.83
2265 7098 0.774276 TACCCTTGGTTGTCATGCCA 59.226 50.000 0.00 0.00 37.09 4.92
2285 7118 0.535780 CAGAGAGGTTGCAGCACCAA 60.536 55.000 10.18 0.00 39.62 3.67
2288 7121 2.331132 GGCAGAGAGGTTGCAGCAC 61.331 63.158 2.05 0.00 43.28 4.40
2296 7129 2.327325 TGTAGAAAGGGCAGAGAGGT 57.673 50.000 0.00 0.00 0.00 3.85
2336 7169 0.107459 GTCTCCATGGGCCTCTTGTC 60.107 60.000 13.02 0.00 0.00 3.18
2337 7170 1.903877 CGTCTCCATGGGCCTCTTGT 61.904 60.000 13.02 0.00 0.00 3.16
2338 7171 1.153289 CGTCTCCATGGGCCTCTTG 60.153 63.158 13.02 1.30 0.00 3.02
2339 7172 1.306141 TCGTCTCCATGGGCCTCTT 60.306 57.895 13.02 0.00 0.00 2.85
2340 7173 2.060980 GTCGTCTCCATGGGCCTCT 61.061 63.158 13.02 0.00 0.00 3.69
2341 7174 2.501610 GTCGTCTCCATGGGCCTC 59.498 66.667 13.02 0.00 0.00 4.70
2342 7175 3.461773 CGTCGTCTCCATGGGCCT 61.462 66.667 13.02 0.00 0.00 5.19
2343 7176 4.530857 CCGTCGTCTCCATGGGCC 62.531 72.222 13.02 0.00 0.00 5.80
2344 7177 3.432051 CTCCGTCGTCTCCATGGGC 62.432 68.421 13.02 1.75 0.00 5.36
2345 7178 1.109920 ATCTCCGTCGTCTCCATGGG 61.110 60.000 13.02 2.57 0.00 4.00
2346 7179 0.031314 CATCTCCGTCGTCTCCATGG 59.969 60.000 4.97 4.97 0.00 3.66
2347 7180 0.031314 CCATCTCCGTCGTCTCCATG 59.969 60.000 0.00 0.00 0.00 3.66
2348 7181 0.106669 TCCATCTCCGTCGTCTCCAT 60.107 55.000 0.00 0.00 0.00 3.41
2349 7182 0.748367 CTCCATCTCCGTCGTCTCCA 60.748 60.000 0.00 0.00 0.00 3.86
2350 7183 1.448922 CCTCCATCTCCGTCGTCTCC 61.449 65.000 0.00 0.00 0.00 3.71
2351 7184 2.026522 CCTCCATCTCCGTCGTCTC 58.973 63.158 0.00 0.00 0.00 3.36
2352 7185 2.122167 GCCTCCATCTCCGTCGTCT 61.122 63.158 0.00 0.00 0.00 4.18
2353 7186 2.413765 GCCTCCATCTCCGTCGTC 59.586 66.667 0.00 0.00 0.00 4.20
2354 7187 3.518998 CGCCTCCATCTCCGTCGT 61.519 66.667 0.00 0.00 0.00 4.34
2355 7188 4.271816 CCGCCTCCATCTCCGTCG 62.272 72.222 0.00 0.00 0.00 5.12
2356 7189 2.833582 TCCGCCTCCATCTCCGTC 60.834 66.667 0.00 0.00 0.00 4.79
2357 7190 2.835431 CTCCGCCTCCATCTCCGT 60.835 66.667 0.00 0.00 0.00 4.69
2358 7191 2.519541 TCTCCGCCTCCATCTCCG 60.520 66.667 0.00 0.00 0.00 4.63
2359 7192 0.757188 TTCTCTCCGCCTCCATCTCC 60.757 60.000 0.00 0.00 0.00 3.71
2360 7193 0.673437 CTTCTCTCCGCCTCCATCTC 59.327 60.000 0.00 0.00 0.00 2.75
2361 7194 0.758685 CCTTCTCTCCGCCTCCATCT 60.759 60.000 0.00 0.00 0.00 2.90
2362 7195 1.745264 CCTTCTCTCCGCCTCCATC 59.255 63.158 0.00 0.00 0.00 3.51
2363 7196 2.439104 GCCTTCTCTCCGCCTCCAT 61.439 63.158 0.00 0.00 0.00 3.41
2364 7197 3.077556 GCCTTCTCTCCGCCTCCA 61.078 66.667 0.00 0.00 0.00 3.86
2365 7198 4.214327 CGCCTTCTCTCCGCCTCC 62.214 72.222 0.00 0.00 0.00 4.30
2366 7199 4.214327 CCGCCTTCTCTCCGCCTC 62.214 72.222 0.00 0.00 0.00 4.70
2369 7202 3.771160 TTCCCGCCTTCTCTCCGC 61.771 66.667 0.00 0.00 0.00 5.54
2370 7203 2.184579 GTTCCCGCCTTCTCTCCG 59.815 66.667 0.00 0.00 0.00 4.63
2371 7204 2.184579 CGTTCCCGCCTTCTCTCC 59.815 66.667 0.00 0.00 0.00 3.71
2372 7205 2.184579 CCGTTCCCGCCTTCTCTC 59.815 66.667 0.00 0.00 0.00 3.20
2373 7206 3.391382 CCCGTTCCCGCCTTCTCT 61.391 66.667 0.00 0.00 0.00 3.10
2374 7207 3.372554 CTCCCGTTCCCGCCTTCTC 62.373 68.421 0.00 0.00 0.00 2.87
2375 7208 3.391382 CTCCCGTTCCCGCCTTCT 61.391 66.667 0.00 0.00 0.00 2.85
2393 7226 2.537560 CCTTGGCCTTATCGCGCAG 61.538 63.158 8.75 0.00 0.00 5.18
2394 7227 2.513666 CCTTGGCCTTATCGCGCA 60.514 61.111 8.75 0.00 0.00 6.09
2395 7228 3.953887 GCCTTGGCCTTATCGCGC 61.954 66.667 3.32 0.00 0.00 6.86
2396 7229 1.776034 GAAGCCTTGGCCTTATCGCG 61.776 60.000 3.32 0.00 0.00 5.87
2397 7230 0.464554 AGAAGCCTTGGCCTTATCGC 60.465 55.000 3.32 0.00 0.00 4.58
2398 7231 1.303309 CAGAAGCCTTGGCCTTATCG 58.697 55.000 3.32 0.00 0.00 2.92
2399 7232 1.028130 GCAGAAGCCTTGGCCTTATC 58.972 55.000 3.32 2.54 33.58 1.75
2400 7233 0.627986 AGCAGAAGCCTTGGCCTTAT 59.372 50.000 3.32 0.00 43.56 1.73
2401 7234 2.078452 AGCAGAAGCCTTGGCCTTA 58.922 52.632 3.32 0.00 43.56 2.69
2402 7235 2.849536 AGCAGAAGCCTTGGCCTT 59.150 55.556 3.32 2.27 43.56 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.