Multiple sequence alignment - TraesCS6D01G351200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G351200 chr6D 100.000 3605 0 0 1 3605 448505879 448509483 0.000000e+00 6658.0
1 TraesCS6D01G351200 chr6D 92.046 1383 81 14 1198 2570 448050607 448049244 0.000000e+00 1917.0
2 TraesCS6D01G351200 chr6D 79.363 1255 217 29 1224 2457 443345099 443346332 0.000000e+00 845.0
3 TraesCS6D01G351200 chr6D 79.363 1255 217 29 1224 2457 443449267 443450500 0.000000e+00 845.0
4 TraesCS6D01G351200 chr6D 78.863 1249 222 29 1224 2451 443550971 443552198 0.000000e+00 806.0
5 TraesCS6D01G351200 chr6D 90.397 604 44 9 4 600 448051693 448051097 0.000000e+00 782.0
6 TraesCS6D01G351200 chr6D 92.693 479 34 1 3127 3605 448049250 448048773 0.000000e+00 689.0
7 TraesCS6D01G351200 chr6D 74.628 1076 215 42 1382 2428 448429103 448430149 4.300000e-114 422.0
8 TraesCS6D01G351200 chr6D 73.836 1074 225 39 1382 2433 448485572 448486611 3.400000e-100 375.0
9 TraesCS6D01G351200 chr6D 76.643 715 142 19 1727 2433 448059057 448058360 4.400000e-99 372.0
10 TraesCS6D01G351200 chr6D 89.231 195 20 1 1001 1195 448050856 448050663 3.600000e-60 243.0
11 TraesCS6D01G351200 chr6A 92.468 2297 128 18 1337 3605 594507896 594505617 0.000000e+00 3241.0
12 TraesCS6D01G351200 chr6A 76.778 689 140 16 1727 2405 594515991 594515313 5.690000e-98 368.0
13 TraesCS6D01G351200 chr6A 91.875 160 10 3 1037 1195 594508158 594508001 1.680000e-53 220.0
14 TraesCS6D01G351200 chr6B 89.128 745 70 5 1788 2521 679360444 679361188 0.000000e+00 917.0
15 TraesCS6D01G351200 chr6B 94.656 393 17 4 281 672 678901218 678900829 1.110000e-169 606.0
16 TraesCS6D01G351200 chr6B 94.649 299 13 2 1 299 678901639 678901344 9.120000e-126 460.0
17 TraesCS6D01G351200 chr6B 75.070 1071 219 35 1382 2428 679285078 679286124 4.240000e-124 455.0
18 TraesCS6D01G351200 chr6B 75.070 1071 219 35 1382 2428 679330324 679329278 4.240000e-124 455.0
19 TraesCS6D01G351200 chr6B 90.698 301 23 5 686 982 675396233 675395934 2.610000e-106 396.0
20 TraesCS6D01G351200 chr6B 81.489 470 53 14 1224 1689 42550040 42550479 4.430000e-94 355.0
21 TraesCS6D01G351200 chr6B 94.977 219 10 1 978 1195 679359655 679359873 3.450000e-90 342.0
22 TraesCS6D01G351200 chr6B 84.366 339 49 4 1318 1654 679360024 679360360 2.680000e-86 329.0
23 TraesCS6D01G351200 chr6B 82.692 208 13 7 2570 2755 679361643 679361849 2.880000e-36 163.0
24 TraesCS6D01G351200 chr6B 87.248 149 12 5 2771 2914 679363106 679363252 2.880000e-36 163.0
25 TraesCS6D01G351200 chr6B 84.615 156 16 7 3448 3598 678877908 678877756 8.060000e-32 148.0
26 TraesCS6D01G351200 chr6B 96.154 52 2 0 1232 1283 679359971 679360022 6.410000e-13 86.1
27 TraesCS6D01G351200 chr1B 91.333 300 23 3 686 982 683992172 683991873 1.210000e-109 407.0
28 TraesCS6D01G351200 chr4A 90.789 304 25 3 681 981 571652997 571653300 1.560000e-108 403.0
29 TraesCS6D01G351200 chr2D 90.397 302 26 3 686 984 583586642 583586943 9.380000e-106 394.0
30 TraesCS6D01G351200 chr2D 88.782 312 33 2 675 984 592356995 592356684 7.300000e-102 381.0
31 TraesCS6D01G351200 chr7D 90.066 302 28 2 686 985 201831141 201830840 1.210000e-104 390.0
32 TraesCS6D01G351200 chr2B 89.423 312 29 4 686 993 734073818 734073507 1.210000e-104 390.0
33 TraesCS6D01G351200 chr2A 90.333 300 26 3 686 982 7915765 7915466 1.210000e-104 390.0
34 TraesCS6D01G351200 chr1D 89.068 311 31 3 676 984 83162927 83163236 2.030000e-102 383.0
35 TraesCS6D01G351200 chr5D 86.792 53 3 3 1145 1195 246656189 246656239 5.030000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G351200 chr6D 448505879 448509483 3604 False 6658.00 6658 100.000000 1 3605 1 chr6D.!!$F6 3604
1 TraesCS6D01G351200 chr6D 448048773 448051693 2920 True 907.75 1917 91.091750 4 3605 4 chr6D.!!$R2 3601
2 TraesCS6D01G351200 chr6D 443345099 443346332 1233 False 845.00 845 79.363000 1224 2457 1 chr6D.!!$F1 1233
3 TraesCS6D01G351200 chr6D 443449267 443450500 1233 False 845.00 845 79.363000 1224 2457 1 chr6D.!!$F2 1233
4 TraesCS6D01G351200 chr6D 443550971 443552198 1227 False 806.00 806 78.863000 1224 2451 1 chr6D.!!$F3 1227
5 TraesCS6D01G351200 chr6D 448429103 448430149 1046 False 422.00 422 74.628000 1382 2428 1 chr6D.!!$F4 1046
6 TraesCS6D01G351200 chr6D 448485572 448486611 1039 False 375.00 375 73.836000 1382 2433 1 chr6D.!!$F5 1051
7 TraesCS6D01G351200 chr6D 448058360 448059057 697 True 372.00 372 76.643000 1727 2433 1 chr6D.!!$R1 706
8 TraesCS6D01G351200 chr6A 594505617 594508158 2541 True 1730.50 3241 92.171500 1037 3605 2 chr6A.!!$R2 2568
9 TraesCS6D01G351200 chr6A 594515313 594515991 678 True 368.00 368 76.778000 1727 2405 1 chr6A.!!$R1 678
10 TraesCS6D01G351200 chr6B 678900829 678901639 810 True 533.00 606 94.652500 1 672 2 chr6B.!!$R4 671
11 TraesCS6D01G351200 chr6B 679285078 679286124 1046 False 455.00 455 75.070000 1382 2428 1 chr6B.!!$F2 1046
12 TraesCS6D01G351200 chr6B 679329278 679330324 1046 True 455.00 455 75.070000 1382 2428 1 chr6B.!!$R3 1046
13 TraesCS6D01G351200 chr6B 679359655 679363252 3597 False 333.35 917 89.094167 978 2914 6 chr6B.!!$F3 1936

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
764 962 0.032403 GTGTACACACGCACACCCTA 59.968 55.0 21.14 0.0 39.3 3.53 F
1228 1480 0.027586 GCATGAAACCATCGTACGCC 59.972 55.0 11.24 0.0 0.0 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1708 1980 0.250166 AACTTCGTACACACCCAGCC 60.250 55.0 0.00 0.00 0.0 4.85 R
3104 5111 0.040958 GATTCCAACGCCATCGATGC 60.041 55.0 20.25 13.87 37.2 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 0.813184 TCAACACCCGATACGACCTC 59.187 55.000 0.00 0.00 0.00 3.85
76 77 1.063649 CACCCGATACGACCTCACG 59.936 63.158 0.00 0.00 39.31 4.35
119 120 2.614057 GGTCCAACCGCTCATAGAAATG 59.386 50.000 0.00 0.00 0.00 2.32
155 157 1.767759 CGCATCCCCTTCAATCCTTT 58.232 50.000 0.00 0.00 0.00 3.11
160 162 1.284785 TCCCCTTCAATCCTTTGCGAT 59.715 47.619 0.00 0.00 32.61 4.58
165 167 3.441572 CCTTCAATCCTTTGCGATTCACT 59.558 43.478 0.00 0.00 29.85 3.41
207 209 1.941975 GCCAACTTGCATGCAAAAACT 59.058 42.857 31.37 14.59 35.33 2.66
226 228 1.546476 CTTAGGTCGTTGCTGAGAGGT 59.454 52.381 0.00 0.00 0.00 3.85
258 260 4.610680 GCAACCAACGATAAGACTTGTGAC 60.611 45.833 0.00 0.00 0.00 3.67
372 519 6.039415 AGGGGGAGAGTTGATAAGTATGTA 57.961 41.667 0.00 0.00 0.00 2.29
373 520 6.078664 AGGGGGAGAGTTGATAAGTATGTAG 58.921 44.000 0.00 0.00 0.00 2.74
415 562 5.825532 TCACCACAGGGAAAATCATAATCA 58.174 37.500 0.00 0.00 38.05 2.57
441 588 7.773690 ACATACTGGGTTCATGTTTAGGTATTC 59.226 37.037 0.00 0.00 28.56 1.75
672 822 7.994911 TGGCTATAGTTCTCAACATCAATCAAT 59.005 33.333 0.84 0.00 0.00 2.57
696 894 5.732849 TTTTGAACTCGTTTTTGAACACG 57.267 34.783 0.00 0.00 37.77 4.49
697 895 3.392769 TGAACTCGTTTTTGAACACGG 57.607 42.857 3.02 0.00 37.02 4.94
698 896 2.743126 TGAACTCGTTTTTGAACACGGT 59.257 40.909 3.02 0.00 37.02 4.83
699 897 3.931468 TGAACTCGTTTTTGAACACGGTA 59.069 39.130 3.02 0.00 37.02 4.02
700 898 3.931285 ACTCGTTTTTGAACACGGTAC 57.069 42.857 3.02 0.00 37.02 3.34
701 899 3.260740 ACTCGTTTTTGAACACGGTACA 58.739 40.909 0.00 0.00 37.02 2.90
702 900 3.683822 ACTCGTTTTTGAACACGGTACAA 59.316 39.130 0.00 0.00 37.02 2.41
703 901 4.153835 ACTCGTTTTTGAACACGGTACAAA 59.846 37.500 0.00 0.00 37.02 2.83
705 903 4.083643 TCGTTTTTGAACACGGTACAAACA 60.084 37.500 0.00 0.00 37.02 2.83
706 904 4.029308 CGTTTTTGAACACGGTACAAACAC 59.971 41.667 0.00 0.00 34.09 3.32
707 905 4.761235 TTTTGAACACGGTACAAACACA 57.239 36.364 0.00 0.00 34.09 3.72
708 906 4.761235 TTTGAACACGGTACAAACACAA 57.239 36.364 0.00 0.00 0.00 3.33
709 907 4.343811 TTGAACACGGTACAAACACAAG 57.656 40.909 0.00 0.00 0.00 3.16
712 910 1.399089 ACACGGTACAAACACAAGCAC 59.601 47.619 0.00 0.00 0.00 4.40
713 911 1.668751 CACGGTACAAACACAAGCACT 59.331 47.619 0.00 0.00 0.00 4.40
714 912 1.937899 ACGGTACAAACACAAGCACTC 59.062 47.619 0.00 0.00 0.00 3.51
715 913 1.937223 CGGTACAAACACAAGCACTCA 59.063 47.619 0.00 0.00 0.00 3.41
716 914 2.548057 CGGTACAAACACAAGCACTCAT 59.452 45.455 0.00 0.00 0.00 2.90
718 916 4.391830 CGGTACAAACACAAGCACTCATAT 59.608 41.667 0.00 0.00 0.00 1.78
719 917 5.579119 CGGTACAAACACAAGCACTCATATA 59.421 40.000 0.00 0.00 0.00 0.86
720 918 6.455113 CGGTACAAACACAAGCACTCATATAC 60.455 42.308 0.00 0.00 0.00 1.47
721 919 6.370442 GGTACAAACACAAGCACTCATATACA 59.630 38.462 0.00 0.00 0.00 2.29
723 921 5.107104 ACAAACACAAGCACTCATATACACG 60.107 40.000 0.00 0.00 0.00 4.49
725 923 2.034591 CACAAGCACTCATATACACGCG 60.035 50.000 3.53 3.53 0.00 6.01
726 924 1.071239 CAAGCACTCATATACACGCGC 60.071 52.381 5.73 0.00 0.00 6.86
728 926 1.139989 GCACTCATATACACGCGCAT 58.860 50.000 5.73 0.00 0.00 4.73
729 927 2.030274 AGCACTCATATACACGCGCATA 60.030 45.455 5.73 1.53 0.00 3.14
730 928 2.090658 GCACTCATATACACGCGCATAC 59.909 50.000 5.73 0.00 0.00 2.39
732 930 3.920412 CACTCATATACACGCGCATACAT 59.080 43.478 5.73 0.00 0.00 2.29
734 932 4.621460 ACTCATATACACGCGCATACATTC 59.379 41.667 5.73 0.00 0.00 2.67
735 933 4.551388 TCATATACACGCGCATACATTCA 58.449 39.130 5.73 0.00 0.00 2.57
736 934 4.384547 TCATATACACGCGCATACATTCAC 59.615 41.667 5.73 0.00 0.00 3.18
737 935 1.282817 TACACGCGCATACATTCACC 58.717 50.000 5.73 0.00 0.00 4.02
739 937 1.817941 ACGCGCATACATTCACCCC 60.818 57.895 5.73 0.00 0.00 4.95
741 939 0.249699 CGCGCATACATTCACCCCTA 60.250 55.000 8.75 0.00 0.00 3.53
742 940 1.608025 CGCGCATACATTCACCCCTAT 60.608 52.381 8.75 0.00 0.00 2.57
743 941 1.806542 GCGCATACATTCACCCCTATG 59.193 52.381 0.30 0.00 0.00 2.23
745 943 3.329386 CGCATACATTCACCCCTATGAG 58.671 50.000 0.00 0.00 0.00 2.90
747 945 4.067896 GCATACATTCACCCCTATGAGTG 58.932 47.826 0.00 0.00 40.97 3.51
750 948 4.755266 ACATTCACCCCTATGAGTGTAC 57.245 45.455 2.48 0.00 44.86 2.90
751 949 4.101114 ACATTCACCCCTATGAGTGTACA 58.899 43.478 2.48 0.00 44.86 2.90
753 951 3.178412 TCACCCCTATGAGTGTACACA 57.822 47.619 27.06 8.72 35.45 3.72
754 952 2.829720 TCACCCCTATGAGTGTACACAC 59.170 50.000 27.06 21.28 46.77 3.82
762 960 3.326109 GTGTACACACGCACACCC 58.674 61.111 21.14 0.00 39.30 4.61
763 961 1.227438 GTGTACACACGCACACCCT 60.227 57.895 21.14 0.00 39.30 4.34
764 962 0.032403 GTGTACACACGCACACCCTA 59.968 55.000 21.14 0.00 39.30 3.53
765 963 0.032403 TGTACACACGCACACCCTAC 59.968 55.000 0.00 0.00 0.00 3.18
766 964 0.668401 GTACACACGCACACCCTACC 60.668 60.000 0.00 0.00 0.00 3.18
767 965 0.828762 TACACACGCACACCCTACCT 60.829 55.000 0.00 0.00 0.00 3.08
768 966 1.374252 CACACGCACACCCTACCTC 60.374 63.158 0.00 0.00 0.00 3.85
770 968 0.251474 ACACGCACACCCTACCTCTA 60.251 55.000 0.00 0.00 0.00 2.43
771 969 1.112113 CACGCACACCCTACCTCTAT 58.888 55.000 0.00 0.00 0.00 1.98
772 970 1.112113 ACGCACACCCTACCTCTATG 58.888 55.000 0.00 0.00 0.00 2.23
773 971 1.341679 ACGCACACCCTACCTCTATGA 60.342 52.381 0.00 0.00 0.00 2.15
774 972 1.338337 CGCACACCCTACCTCTATGAG 59.662 57.143 0.00 0.00 0.00 2.90
777 975 2.101582 CACACCCTACCTCTATGAGCAC 59.898 54.545 0.00 0.00 0.00 4.40
778 976 1.689273 CACCCTACCTCTATGAGCACC 59.311 57.143 0.00 0.00 0.00 5.01
780 978 2.243810 CCCTACCTCTATGAGCACCTC 58.756 57.143 0.00 0.00 0.00 3.85
782 980 2.890311 CCTACCTCTATGAGCACCTCTG 59.110 54.545 0.00 0.00 0.00 3.35
783 981 2.836636 ACCTCTATGAGCACCTCTGA 57.163 50.000 0.00 0.00 0.00 3.27
784 982 3.107402 ACCTCTATGAGCACCTCTGAA 57.893 47.619 0.00 0.00 0.00 3.02
785 983 3.445008 ACCTCTATGAGCACCTCTGAAA 58.555 45.455 0.00 0.00 0.00 2.69
788 986 4.441356 CCTCTATGAGCACCTCTGAAAGAC 60.441 50.000 0.00 0.00 38.67 3.01
789 987 4.348486 TCTATGAGCACCTCTGAAAGACT 58.652 43.478 0.00 0.00 38.67 3.24
791 989 2.319844 TGAGCACCTCTGAAAGACTGA 58.680 47.619 0.00 0.00 38.67 3.41
792 990 2.298446 TGAGCACCTCTGAAAGACTGAG 59.702 50.000 0.00 0.00 38.67 3.35
793 991 1.001860 AGCACCTCTGAAAGACTGAGC 59.998 52.381 0.00 0.00 38.67 4.26
794 992 1.943507 GCACCTCTGAAAGACTGAGCC 60.944 57.143 0.00 0.00 38.67 4.70
797 995 1.403514 CCTCTGAAAGACTGAGCCGAC 60.404 57.143 0.00 0.00 38.67 4.79
798 996 1.270826 CTCTGAAAGACTGAGCCGACA 59.729 52.381 0.00 0.00 38.67 4.35
799 997 1.895798 TCTGAAAGACTGAGCCGACAT 59.104 47.619 0.00 0.00 38.67 3.06
800 998 3.089284 TCTGAAAGACTGAGCCGACATA 58.911 45.455 0.00 0.00 38.67 2.29
801 999 3.701542 TCTGAAAGACTGAGCCGACATAT 59.298 43.478 0.00 0.00 38.67 1.78
802 1000 4.046938 TGAAAGACTGAGCCGACATATC 57.953 45.455 0.00 0.00 0.00 1.63
803 1001 3.447229 TGAAAGACTGAGCCGACATATCA 59.553 43.478 0.00 0.00 0.00 2.15
804 1002 4.100035 TGAAAGACTGAGCCGACATATCAT 59.900 41.667 0.00 0.00 0.00 2.45
805 1003 3.932545 AGACTGAGCCGACATATCATC 57.067 47.619 0.00 0.00 0.00 2.92
806 1004 3.495331 AGACTGAGCCGACATATCATCT 58.505 45.455 0.00 0.00 0.00 2.90
807 1005 3.894427 AGACTGAGCCGACATATCATCTT 59.106 43.478 0.00 0.00 0.00 2.40
808 1006 3.986572 GACTGAGCCGACATATCATCTTG 59.013 47.826 0.00 0.00 0.00 3.02
809 1007 3.638627 ACTGAGCCGACATATCATCTTGA 59.361 43.478 0.00 0.00 0.00 3.02
810 1008 4.100035 ACTGAGCCGACATATCATCTTGAA 59.900 41.667 0.00 0.00 0.00 2.69
811 1009 5.022282 TGAGCCGACATATCATCTTGAAA 57.978 39.130 0.00 0.00 0.00 2.69
812 1010 5.614308 TGAGCCGACATATCATCTTGAAAT 58.386 37.500 0.00 0.00 0.00 2.17
813 1011 6.057533 TGAGCCGACATATCATCTTGAAATT 58.942 36.000 0.00 0.00 0.00 1.82
814 1012 6.543465 TGAGCCGACATATCATCTTGAAATTT 59.457 34.615 0.00 0.00 0.00 1.82
815 1013 7.714813 TGAGCCGACATATCATCTTGAAATTTA 59.285 33.333 0.00 0.00 0.00 1.40
816 1014 7.865707 AGCCGACATATCATCTTGAAATTTAC 58.134 34.615 0.00 0.00 0.00 2.01
817 1015 6.792250 GCCGACATATCATCTTGAAATTTACG 59.208 38.462 0.00 0.00 0.00 3.18
818 1016 7.307160 GCCGACATATCATCTTGAAATTTACGA 60.307 37.037 0.00 0.00 0.00 3.43
819 1017 8.547894 CCGACATATCATCTTGAAATTTACGAA 58.452 33.333 0.00 0.00 0.00 3.85
820 1018 9.573102 CGACATATCATCTTGAAATTTACGAAG 57.427 33.333 0.00 0.00 0.00 3.79
825 1023 7.129109 TCATCTTGAAATTTACGAAGTCACC 57.871 36.000 0.00 0.00 43.93 4.02
826 1024 5.585500 TCTTGAAATTTACGAAGTCACCG 57.415 39.130 0.00 0.00 43.93 4.94
827 1025 5.051816 TCTTGAAATTTACGAAGTCACCGT 58.948 37.500 0.00 0.00 43.93 4.83
828 1026 6.215121 TCTTGAAATTTACGAAGTCACCGTA 58.785 36.000 0.00 0.00 43.93 4.02
829 1027 6.364165 TCTTGAAATTTACGAAGTCACCGTAG 59.636 38.462 0.00 0.00 43.93 3.51
841 1039 2.754658 CCGTAGGCACCTCCTCGT 60.755 66.667 0.00 0.00 46.14 4.18
842 1040 2.772691 CCGTAGGCACCTCCTCGTC 61.773 68.421 0.00 0.00 46.14 4.20
843 1041 2.799371 GTAGGCACCTCCTCGTCG 59.201 66.667 0.00 0.00 43.20 5.12
844 1042 1.748122 GTAGGCACCTCCTCGTCGA 60.748 63.158 0.00 0.00 43.20 4.20
845 1043 1.748122 TAGGCACCTCCTCGTCGAC 60.748 63.158 5.18 5.18 43.20 4.20
846 1044 4.477975 GGCACCTCCTCGTCGACG 62.478 72.222 31.30 31.30 41.45 5.12
847 1045 4.477975 GCACCTCCTCGTCGACGG 62.478 72.222 35.05 24.95 40.29 4.79
848 1046 3.812019 CACCTCCTCGTCGACGGG 61.812 72.222 35.05 32.90 40.09 5.28
849 1047 4.025858 ACCTCCTCGTCGACGGGA 62.026 66.667 37.97 34.40 43.86 5.14
850 1048 2.749044 CCTCCTCGTCGACGGGAA 60.749 66.667 37.97 19.87 43.86 3.97
851 1049 2.484203 CTCCTCGTCGACGGGAAC 59.516 66.667 37.97 0.00 43.86 3.62
865 1063 2.928416 GGAACGTTTCCTCCCACTG 58.072 57.895 0.46 0.00 46.57 3.66
866 1064 0.395312 GGAACGTTTCCTCCCACTGA 59.605 55.000 0.46 0.00 46.57 3.41
867 1065 1.202722 GGAACGTTTCCTCCCACTGAA 60.203 52.381 0.46 0.00 46.57 3.02
868 1066 2.552373 GGAACGTTTCCTCCCACTGAAT 60.552 50.000 0.46 0.00 46.57 2.57
869 1067 2.185004 ACGTTTCCTCCCACTGAATG 57.815 50.000 0.00 0.00 0.00 2.67
870 1068 0.804989 CGTTTCCTCCCACTGAATGC 59.195 55.000 0.00 0.00 0.00 3.56
871 1069 1.881925 CGTTTCCTCCCACTGAATGCA 60.882 52.381 0.00 0.00 0.00 3.96
872 1070 1.541588 GTTTCCTCCCACTGAATGCAC 59.458 52.381 0.00 0.00 0.00 4.57
873 1071 0.770499 TTCCTCCCACTGAATGCACA 59.230 50.000 0.00 0.00 0.00 4.57
874 1072 0.994247 TCCTCCCACTGAATGCACAT 59.006 50.000 0.00 0.00 0.00 3.21
875 1073 1.065199 TCCTCCCACTGAATGCACATC 60.065 52.381 0.00 0.00 0.00 3.06
876 1074 1.012086 CTCCCACTGAATGCACATCG 58.988 55.000 0.00 0.00 0.00 3.84
877 1075 0.324614 TCCCACTGAATGCACATCGT 59.675 50.000 0.00 0.00 0.00 3.73
878 1076 0.729116 CCCACTGAATGCACATCGTC 59.271 55.000 0.00 0.00 0.00 4.20
879 1077 0.371301 CCACTGAATGCACATCGTCG 59.629 55.000 0.00 0.00 0.00 5.12
880 1078 0.371301 CACTGAATGCACATCGTCGG 59.629 55.000 0.00 0.00 0.00 4.79
881 1079 0.246360 ACTGAATGCACATCGTCGGA 59.754 50.000 0.00 0.00 0.00 4.55
882 1080 1.337728 ACTGAATGCACATCGTCGGAA 60.338 47.619 0.00 0.00 0.00 4.30
883 1081 1.731709 CTGAATGCACATCGTCGGAAA 59.268 47.619 0.00 0.00 0.00 3.13
884 1082 2.352651 CTGAATGCACATCGTCGGAAAT 59.647 45.455 0.00 0.00 0.00 2.17
885 1083 2.351418 TGAATGCACATCGTCGGAAATC 59.649 45.455 0.00 0.00 0.00 2.17
886 1084 1.299541 ATGCACATCGTCGGAAATCC 58.700 50.000 0.00 0.00 0.00 3.01
887 1085 0.249120 TGCACATCGTCGGAAATCCT 59.751 50.000 0.00 0.00 0.00 3.24
888 1086 0.652592 GCACATCGTCGGAAATCCTG 59.347 55.000 0.00 0.00 0.00 3.86
889 1087 1.739035 GCACATCGTCGGAAATCCTGA 60.739 52.381 0.00 0.00 0.00 3.86
890 1088 2.616960 CACATCGTCGGAAATCCTGAA 58.383 47.619 0.00 0.00 0.00 3.02
891 1089 3.000041 CACATCGTCGGAAATCCTGAAA 59.000 45.455 0.00 0.00 0.00 2.69
892 1090 3.623060 CACATCGTCGGAAATCCTGAAAT 59.377 43.478 0.00 0.00 0.00 2.17
893 1091 4.808895 CACATCGTCGGAAATCCTGAAATA 59.191 41.667 0.00 0.00 0.00 1.40
894 1092 5.293324 CACATCGTCGGAAATCCTGAAATAA 59.707 40.000 0.00 0.00 0.00 1.40
895 1093 6.017934 CACATCGTCGGAAATCCTGAAATAAT 60.018 38.462 0.00 0.00 0.00 1.28
896 1094 6.202954 ACATCGTCGGAAATCCTGAAATAATC 59.797 38.462 0.00 0.00 0.00 1.75
897 1095 5.914033 TCGTCGGAAATCCTGAAATAATCT 58.086 37.500 0.00 0.00 0.00 2.40
898 1096 7.046292 TCGTCGGAAATCCTGAAATAATCTA 57.954 36.000 0.00 0.00 0.00 1.98
899 1097 7.145985 TCGTCGGAAATCCTGAAATAATCTAG 58.854 38.462 0.00 0.00 0.00 2.43
900 1098 7.013942 TCGTCGGAAATCCTGAAATAATCTAGA 59.986 37.037 0.00 0.00 0.00 2.43
901 1099 7.652105 CGTCGGAAATCCTGAAATAATCTAGAA 59.348 37.037 0.00 0.00 0.00 2.10
902 1100 9.326413 GTCGGAAATCCTGAAATAATCTAGAAA 57.674 33.333 0.00 0.00 0.00 2.52
915 1113 9.884465 AAATAATCTAGAAATAAATGCGAGCAC 57.116 29.630 0.00 0.00 0.00 4.40
916 1114 5.931441 ATCTAGAAATAAATGCGAGCACC 57.069 39.130 0.00 0.00 0.00 5.01
917 1115 4.765273 TCTAGAAATAAATGCGAGCACCA 58.235 39.130 0.00 0.00 0.00 4.17
918 1116 5.182487 TCTAGAAATAAATGCGAGCACCAA 58.818 37.500 0.00 0.00 0.00 3.67
919 1117 4.361451 AGAAATAAATGCGAGCACCAAG 57.639 40.909 0.00 0.00 0.00 3.61
920 1118 4.009675 AGAAATAAATGCGAGCACCAAGA 58.990 39.130 0.00 0.00 0.00 3.02
921 1119 3.764885 AATAAATGCGAGCACCAAGAC 57.235 42.857 0.00 0.00 0.00 3.01
922 1120 2.472695 TAAATGCGAGCACCAAGACT 57.527 45.000 0.00 0.00 0.00 3.24
923 1121 1.609208 AAATGCGAGCACCAAGACTT 58.391 45.000 0.00 0.00 0.00 3.01
924 1122 0.877071 AATGCGAGCACCAAGACTTG 59.123 50.000 8.31 8.31 0.00 3.16
925 1123 0.035317 ATGCGAGCACCAAGACTTGA 59.965 50.000 16.99 0.00 0.00 3.02
926 1124 0.179059 TGCGAGCACCAAGACTTGAA 60.179 50.000 16.99 0.00 0.00 2.69
927 1125 0.235926 GCGAGCACCAAGACTTGAAC 59.764 55.000 16.99 5.48 0.00 3.18
928 1126 0.868406 CGAGCACCAAGACTTGAACC 59.132 55.000 16.99 4.09 0.00 3.62
929 1127 1.239347 GAGCACCAAGACTTGAACCC 58.761 55.000 16.99 2.40 0.00 4.11
930 1128 0.846693 AGCACCAAGACTTGAACCCT 59.153 50.000 16.99 4.58 0.00 4.34
931 1129 2.038557 GAGCACCAAGACTTGAACCCTA 59.961 50.000 16.99 0.00 0.00 3.53
932 1130 2.039084 AGCACCAAGACTTGAACCCTAG 59.961 50.000 16.99 0.50 0.00 3.02
933 1131 2.224548 GCACCAAGACTTGAACCCTAGT 60.225 50.000 16.99 1.14 0.00 2.57
934 1132 3.665190 CACCAAGACTTGAACCCTAGTC 58.335 50.000 16.99 0.00 42.74 2.59
935 1133 2.299297 ACCAAGACTTGAACCCTAGTCG 59.701 50.000 16.99 0.00 45.54 4.18
936 1134 2.353803 CCAAGACTTGAACCCTAGTCGG 60.354 54.545 16.99 0.00 45.54 4.79
937 1135 0.896226 AGACTTGAACCCTAGTCGGC 59.104 55.000 0.00 0.00 45.54 5.54
938 1136 0.896226 GACTTGAACCCTAGTCGGCT 59.104 55.000 0.00 0.00 35.95 5.52
939 1137 0.608640 ACTTGAACCCTAGTCGGCTG 59.391 55.000 0.00 0.00 0.00 4.85
940 1138 0.108138 CTTGAACCCTAGTCGGCTGG 60.108 60.000 0.00 0.00 0.00 4.85
941 1139 1.550130 TTGAACCCTAGTCGGCTGGG 61.550 60.000 13.33 13.33 46.07 4.45
942 1140 1.684734 GAACCCTAGTCGGCTGGGA 60.685 63.158 22.55 0.00 45.17 4.37
943 1141 1.003051 AACCCTAGTCGGCTGGGAT 59.997 57.895 22.55 11.08 45.17 3.85
944 1142 0.263765 AACCCTAGTCGGCTGGGATA 59.736 55.000 22.55 0.00 45.17 2.59
945 1143 0.469518 ACCCTAGTCGGCTGGGATAC 60.470 60.000 22.55 0.00 45.17 2.24
962 1160 4.862371 GGATACCACAATCCCTTTAACCA 58.138 43.478 0.00 0.00 39.74 3.67
963 1161 5.454966 GGATACCACAATCCCTTTAACCAT 58.545 41.667 0.00 0.00 39.74 3.55
964 1162 5.897250 GGATACCACAATCCCTTTAACCATT 59.103 40.000 0.00 0.00 39.74 3.16
965 1163 6.040504 GGATACCACAATCCCTTTAACCATTC 59.959 42.308 0.00 0.00 39.74 2.67
966 1164 4.746466 ACCACAATCCCTTTAACCATTCA 58.254 39.130 0.00 0.00 0.00 2.57
967 1165 5.151454 ACCACAATCCCTTTAACCATTCAA 58.849 37.500 0.00 0.00 0.00 2.69
968 1166 5.011635 ACCACAATCCCTTTAACCATTCAAC 59.988 40.000 0.00 0.00 0.00 3.18
969 1167 5.478407 CACAATCCCTTTAACCATTCAACC 58.522 41.667 0.00 0.00 0.00 3.77
970 1168 5.011533 CACAATCCCTTTAACCATTCAACCA 59.988 40.000 0.00 0.00 0.00 3.67
971 1169 5.011635 ACAATCCCTTTAACCATTCAACCAC 59.988 40.000 0.00 0.00 0.00 4.16
972 1170 4.186077 TCCCTTTAACCATTCAACCACA 57.814 40.909 0.00 0.00 0.00 4.17
973 1171 4.148838 TCCCTTTAACCATTCAACCACAG 58.851 43.478 0.00 0.00 0.00 3.66
974 1172 3.258123 CCCTTTAACCATTCAACCACAGG 59.742 47.826 0.00 0.00 0.00 4.00
975 1173 3.895041 CCTTTAACCATTCAACCACAGGT 59.105 43.478 0.00 0.00 37.65 4.00
995 1193 4.099419 AGGTTGGTTCACATTTTTGGACTC 59.901 41.667 0.00 0.00 0.00 3.36
1195 1394 2.560504 GATCACATGCACCGTTGGATA 58.439 47.619 0.00 0.00 31.42 2.59
1228 1480 0.027586 GCATGAAACCATCGTACGCC 59.972 55.000 11.24 0.00 0.00 5.68
1285 1547 3.437795 CCCAAAGCAGGAGCAGCG 61.438 66.667 0.00 0.00 45.49 5.18
1338 1607 3.611674 TCGAGTTGCGAGCACCCA 61.612 61.111 0.00 0.00 45.59 4.51
1627 1899 3.511146 GGCCCATTTCAGATTCTGTTTCA 59.489 43.478 13.23 0.00 32.61 2.69
1637 1909 2.725203 TTCTGTTTCACGGGCGAGGG 62.725 60.000 0.00 0.00 0.00 4.30
1649 1921 3.430497 CGAGGGGGAGGAGGAGGA 61.430 72.222 0.00 0.00 0.00 3.71
1650 1922 2.612251 GAGGGGGAGGAGGAGGAG 59.388 72.222 0.00 0.00 0.00 3.69
1651 1923 3.039526 AGGGGGAGGAGGAGGAGG 61.040 72.222 0.00 0.00 0.00 4.30
1702 1974 3.340727 GTGGACGAATACACCTCCG 57.659 57.895 0.00 0.00 32.89 4.63
1816 2097 3.206034 TCGTTGTCATACACAGGTACG 57.794 47.619 0.00 0.00 37.87 3.67
1821 2102 3.159472 TGTCATACACAGGTACGGTTCT 58.841 45.455 0.00 0.00 31.98 3.01
1825 2106 1.006571 CACAGGTACGGTTCTGCGT 60.007 57.895 9.95 0.00 31.98 5.24
1831 2124 1.063031 GTACGGTTCTGCGTACAACC 58.937 55.000 1.46 0.54 40.21 3.77
1890 2183 1.743252 GGACTTTGGCGAGCTCCTG 60.743 63.158 8.47 0.00 0.00 3.86
2127 2438 2.194056 CTGCAGGGGATGGCGAAT 59.806 61.111 5.57 0.00 0.00 3.34
2194 2505 3.406595 ATGGGGCGGCTGAAGCTAC 62.407 63.158 9.56 0.00 41.70 3.58
2356 2674 4.636435 CCACCGGCGGTTTCCAGT 62.636 66.667 32.12 2.04 31.02 4.00
2382 2700 0.393673 GGGAAAGCTGCCCTTCTCTC 60.394 60.000 15.92 0.00 42.56 3.20
2413 2731 1.303561 ATGGACATGTGCTTGCCGT 60.304 52.632 18.75 4.17 0.00 5.68
2457 2778 2.040145 TCCATGACTGTTCCAGCAATGA 59.960 45.455 0.00 0.44 34.37 2.57
2533 2884 5.361571 TCCGTGACATTTCCTATAGCTTGTA 59.638 40.000 0.00 0.00 0.00 2.41
2614 3350 4.293662 TGTACTGTGCCAATGAACCATA 57.706 40.909 0.00 0.00 0.00 2.74
2638 3374 1.086634 GCGTCAGAATCAGAGGGCAC 61.087 60.000 0.00 0.00 0.00 5.01
2674 3436 5.292834 GGTTTTTAGGCTCGTGGTCTTATAC 59.707 44.000 0.00 0.00 0.00 1.47
2682 3444 5.163581 GGCTCGTGGTCTTATACTGAACTTA 60.164 44.000 0.00 0.00 0.00 2.24
2932 4939 3.119029 GCATCTACAAACACATGGGCAAT 60.119 43.478 0.00 0.00 0.00 3.56
2980 4987 4.890158 TGTCCTGAAAACTATGCAGAGA 57.110 40.909 16.75 0.00 0.00 3.10
2995 5002 1.337703 CAGAGAGGATCCAAGAGCTCG 59.662 57.143 15.82 0.00 33.66 5.03
3004 5011 1.285950 CAAGAGCTCGTCGGTCACA 59.714 57.895 8.37 0.00 42.56 3.58
3010 5017 1.816835 AGCTCGTCGGTCACAGATTAA 59.183 47.619 0.00 0.00 0.00 1.40
3017 5024 4.288531 GTCGGTCACAGATTAAGTATCCG 58.711 47.826 0.00 0.00 36.48 4.18
3028 5035 7.776969 ACAGATTAAGTATCCGTGGTACTAGAA 59.223 37.037 0.00 0.00 33.45 2.10
3033 5040 7.472334 AAGTATCCGTGGTACTAGAAAAAGA 57.528 36.000 0.00 0.00 32.34 2.52
3034 5041 6.861144 AGTATCCGTGGTACTAGAAAAAGAC 58.139 40.000 0.00 0.00 30.91 3.01
3035 5042 4.164822 TCCGTGGTACTAGAAAAAGACG 57.835 45.455 0.00 0.00 0.00 4.18
3036 5043 3.569701 TCCGTGGTACTAGAAAAAGACGT 59.430 43.478 0.00 0.00 0.00 4.34
3037 5044 4.037923 TCCGTGGTACTAGAAAAAGACGTT 59.962 41.667 0.00 0.00 0.00 3.99
3044 5051 3.560068 ACTAGAAAAAGACGTTGCTGTGG 59.440 43.478 0.00 0.00 0.00 4.17
3096 5103 0.619832 AGCTTGGAGGATGAGGCAGA 60.620 55.000 0.00 0.00 0.00 4.26
3104 5111 1.093159 GGATGAGGCAGAACAAGCAG 58.907 55.000 0.00 0.00 0.00 4.24
3121 5128 1.078497 AGCATCGATGGCGTTGGAA 60.078 52.632 26.00 0.00 37.61 3.53
3268 5275 6.785337 TCCCTTTATCGAAGAACTACATGA 57.215 37.500 0.00 0.00 43.58 3.07
3291 5298 7.552459 TGATTCATCGAACATCCAAAGTACTA 58.448 34.615 0.00 0.00 0.00 1.82
3307 5314 5.018539 AGTACTAATATCACGCAAAGCCA 57.981 39.130 0.00 0.00 0.00 4.75
3323 5330 0.184451 GCCATCCCACACCATCTGAT 59.816 55.000 0.00 0.00 0.00 2.90
3407 5414 3.327757 ACTTCTTCACACCCTCAGCATAA 59.672 43.478 0.00 0.00 0.00 1.90
3459 5467 6.560253 TCTTGTTTAGCTTCACAAATCCTC 57.440 37.500 10.63 0.00 32.53 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 4.091945 CCATGAGAGTGTTGATTGTACGTG 59.908 45.833 0.00 0.00 0.00 4.49
76 77 4.872691 CCTCCATGAGAGTGTTGATTGTAC 59.127 45.833 0.00 0.00 41.47 2.90
144 146 4.691860 AGTGAATCGCAAAGGATTGAAG 57.308 40.909 0.00 0.00 38.94 3.02
148 150 6.381801 CAAACTAAGTGAATCGCAAAGGATT 58.618 36.000 0.00 0.00 39.27 3.01
155 157 3.750652 TGATGCAAACTAAGTGAATCGCA 59.249 39.130 0.00 0.00 34.19 5.10
160 162 5.122519 TGTGTCTGATGCAAACTAAGTGAA 58.877 37.500 0.00 0.00 0.00 3.18
165 167 4.092821 GCGTATGTGTCTGATGCAAACTAA 59.907 41.667 0.00 0.00 0.00 2.24
207 209 1.629043 ACCTCTCAGCAACGACCTAA 58.371 50.000 0.00 0.00 0.00 2.69
226 228 5.527951 TCTTATCGTTGGTTGCAACAAGTTA 59.472 36.000 29.55 12.96 34.94 2.24
258 260 2.693069 AGGATCACAAGCAGTTTCTCG 58.307 47.619 0.00 0.00 0.00 4.04
372 519 5.189180 GTGAAGGACCTATTGATTTGAGCT 58.811 41.667 0.00 0.00 0.00 4.09
373 520 4.336713 GGTGAAGGACCTATTGATTTGAGC 59.663 45.833 0.00 0.00 42.25 4.26
415 562 5.514500 ACCTAAACATGAACCCAGTATGT 57.486 39.130 0.00 0.00 36.66 2.29
551 698 3.255888 CAGGCCACAAGCGATCTACTATA 59.744 47.826 5.01 0.00 45.17 1.31
634 783 5.487845 AGAACTATAGCCATATTACCCCACC 59.512 44.000 0.00 0.00 0.00 4.61
635 784 6.212791 TGAGAACTATAGCCATATTACCCCAC 59.787 42.308 0.00 0.00 0.00 4.61
636 785 6.327781 TGAGAACTATAGCCATATTACCCCA 58.672 40.000 0.00 0.00 0.00 4.96
678 876 3.394313 ACCGTGTTCAAAAACGAGTTC 57.606 42.857 7.02 0.00 42.32 3.01
687 885 4.724303 CTTGTGTTTGTACCGTGTTCAAA 58.276 39.130 5.26 5.26 32.18 2.69
688 886 3.426426 GCTTGTGTTTGTACCGTGTTCAA 60.426 43.478 0.00 0.00 0.00 2.69
690 888 2.096174 TGCTTGTGTTTGTACCGTGTTC 59.904 45.455 0.00 0.00 0.00 3.18
691 889 2.085320 TGCTTGTGTTTGTACCGTGTT 58.915 42.857 0.00 0.00 0.00 3.32
693 891 1.668751 AGTGCTTGTGTTTGTACCGTG 59.331 47.619 0.00 0.00 0.00 4.94
695 893 1.937223 TGAGTGCTTGTGTTTGTACCG 59.063 47.619 0.00 0.00 0.00 4.02
696 894 5.880054 ATATGAGTGCTTGTGTTTGTACC 57.120 39.130 0.00 0.00 0.00 3.34
697 895 7.234384 GTGTATATGAGTGCTTGTGTTTGTAC 58.766 38.462 0.00 0.00 0.00 2.90
698 896 6.090223 CGTGTATATGAGTGCTTGTGTTTGTA 59.910 38.462 0.00 0.00 0.00 2.41
699 897 5.107104 CGTGTATATGAGTGCTTGTGTTTGT 60.107 40.000 0.00 0.00 0.00 2.83
700 898 5.315982 CGTGTATATGAGTGCTTGTGTTTG 58.684 41.667 0.00 0.00 0.00 2.93
701 899 4.142902 GCGTGTATATGAGTGCTTGTGTTT 60.143 41.667 0.00 0.00 0.00 2.83
702 900 3.370978 GCGTGTATATGAGTGCTTGTGTT 59.629 43.478 0.00 0.00 0.00 3.32
703 901 2.930040 GCGTGTATATGAGTGCTTGTGT 59.070 45.455 0.00 0.00 0.00 3.72
705 903 2.193447 CGCGTGTATATGAGTGCTTGT 58.807 47.619 0.00 0.00 0.00 3.16
706 904 1.071239 GCGCGTGTATATGAGTGCTTG 60.071 52.381 8.43 0.00 37.18 4.01
707 905 1.209128 GCGCGTGTATATGAGTGCTT 58.791 50.000 8.43 0.00 37.18 3.91
708 906 0.102300 TGCGCGTGTATATGAGTGCT 59.898 50.000 8.43 0.00 40.38 4.40
709 907 1.139989 ATGCGCGTGTATATGAGTGC 58.860 50.000 8.43 3.80 40.17 4.40
712 910 4.621034 TGAATGTATGCGCGTGTATATGAG 59.379 41.667 13.61 0.00 0.00 2.90
713 911 4.384547 GTGAATGTATGCGCGTGTATATGA 59.615 41.667 13.61 1.21 0.00 2.15
714 912 4.434198 GGTGAATGTATGCGCGTGTATATG 60.434 45.833 13.61 0.00 0.00 1.78
715 913 3.678072 GGTGAATGTATGCGCGTGTATAT 59.322 43.478 13.61 2.11 0.00 0.86
716 914 3.054166 GGTGAATGTATGCGCGTGTATA 58.946 45.455 13.61 2.40 0.00 1.47
718 916 1.282817 GGTGAATGTATGCGCGTGTA 58.717 50.000 13.61 0.62 0.00 2.90
719 917 1.366111 GGGTGAATGTATGCGCGTGT 61.366 55.000 13.61 0.00 0.00 4.49
720 918 1.351707 GGGTGAATGTATGCGCGTG 59.648 57.895 13.61 0.00 0.00 5.34
721 919 1.817941 GGGGTGAATGTATGCGCGT 60.818 57.895 8.43 7.55 0.00 6.01
723 921 1.806542 CATAGGGGTGAATGTATGCGC 59.193 52.381 0.00 0.00 0.00 6.09
725 923 4.067896 CACTCATAGGGGTGAATGTATGC 58.932 47.826 0.00 0.00 35.69 3.14
726 924 5.296151 ACACTCATAGGGGTGAATGTATG 57.704 43.478 15.55 0.00 36.86 2.39
728 926 5.128171 GTGTACACTCATAGGGGTGAATGTA 59.872 44.000 15.55 0.00 39.13 2.29
729 927 4.081087 GTGTACACTCATAGGGGTGAATGT 60.081 45.833 15.55 0.00 41.04 2.71
730 928 4.081142 TGTGTACACTCATAGGGGTGAATG 60.081 45.833 25.60 0.00 37.22 2.67
732 930 3.259876 GTGTGTACACTCATAGGGGTGAA 59.740 47.826 25.60 0.00 43.25 3.18
734 932 2.416836 CGTGTGTACACTCATAGGGGTG 60.417 54.545 25.60 5.70 44.34 4.61
735 933 1.822990 CGTGTGTACACTCATAGGGGT 59.177 52.381 25.60 0.00 44.34 4.95
736 934 1.470979 GCGTGTGTACACTCATAGGGG 60.471 57.143 25.60 10.10 44.34 4.79
737 935 1.203758 TGCGTGTGTACACTCATAGGG 59.796 52.381 25.60 10.75 44.34 3.53
739 937 2.941428 TGTGCGTGTGTACACTCATAG 58.059 47.619 25.60 11.40 42.56 2.23
741 939 3.978460 TGTGCGTGTGTACACTCAT 57.022 47.368 25.60 0.00 42.56 2.90
747 945 0.668401 GGTAGGGTGTGCGTGTGTAC 60.668 60.000 0.00 0.00 0.00 2.90
748 946 0.828762 AGGTAGGGTGTGCGTGTGTA 60.829 55.000 0.00 0.00 0.00 2.90
750 948 1.374252 GAGGTAGGGTGTGCGTGTG 60.374 63.158 0.00 0.00 0.00 3.82
751 949 0.251474 TAGAGGTAGGGTGTGCGTGT 60.251 55.000 0.00 0.00 0.00 4.49
753 951 1.112113 CATAGAGGTAGGGTGTGCGT 58.888 55.000 0.00 0.00 0.00 5.24
754 952 1.338337 CTCATAGAGGTAGGGTGTGCG 59.662 57.143 0.00 0.00 0.00 5.34
756 954 2.101582 GTGCTCATAGAGGTAGGGTGTG 59.898 54.545 0.00 0.00 0.00 3.82
757 955 2.389715 GTGCTCATAGAGGTAGGGTGT 58.610 52.381 0.00 0.00 0.00 4.16
759 957 1.576272 AGGTGCTCATAGAGGTAGGGT 59.424 52.381 0.00 0.00 0.00 4.34
760 958 2.158385 AGAGGTGCTCATAGAGGTAGGG 60.158 54.545 0.00 0.00 32.06 3.53
761 959 2.890311 CAGAGGTGCTCATAGAGGTAGG 59.110 54.545 0.00 0.00 32.06 3.18
762 960 3.826524 TCAGAGGTGCTCATAGAGGTAG 58.173 50.000 0.00 0.00 32.06 3.18
763 961 3.953542 TCAGAGGTGCTCATAGAGGTA 57.046 47.619 0.00 0.00 32.06 3.08
764 962 2.836636 TCAGAGGTGCTCATAGAGGT 57.163 50.000 0.00 0.00 32.06 3.85
765 963 3.703556 TCTTTCAGAGGTGCTCATAGAGG 59.296 47.826 0.00 0.00 32.06 3.69
766 964 4.402155 AGTCTTTCAGAGGTGCTCATAGAG 59.598 45.833 0.00 0.00 32.06 2.43
767 965 4.159321 CAGTCTTTCAGAGGTGCTCATAGA 59.841 45.833 0.00 0.00 32.06 1.98
768 966 4.159321 TCAGTCTTTCAGAGGTGCTCATAG 59.841 45.833 0.00 0.00 32.06 2.23
770 968 2.902486 TCAGTCTTTCAGAGGTGCTCAT 59.098 45.455 0.00 0.00 32.06 2.90
771 969 2.298446 CTCAGTCTTTCAGAGGTGCTCA 59.702 50.000 0.00 0.00 32.06 4.26
772 970 2.930455 GCTCAGTCTTTCAGAGGTGCTC 60.930 54.545 0.00 0.00 31.57 4.26
773 971 1.001860 GCTCAGTCTTTCAGAGGTGCT 59.998 52.381 0.00 0.00 31.57 4.40
774 972 1.437625 GCTCAGTCTTTCAGAGGTGC 58.562 55.000 0.00 0.00 31.57 5.01
777 975 0.891373 TCGGCTCAGTCTTTCAGAGG 59.109 55.000 0.00 0.00 31.57 3.69
778 976 1.270826 TGTCGGCTCAGTCTTTCAGAG 59.729 52.381 0.00 0.00 33.62 3.35
780 978 2.376808 ATGTCGGCTCAGTCTTTCAG 57.623 50.000 0.00 0.00 0.00 3.02
782 980 4.046938 TGATATGTCGGCTCAGTCTTTC 57.953 45.455 0.00 0.00 0.00 2.62
783 981 4.343526 AGATGATATGTCGGCTCAGTCTTT 59.656 41.667 0.00 0.00 0.00 2.52
784 982 3.894427 AGATGATATGTCGGCTCAGTCTT 59.106 43.478 0.00 0.00 0.00 3.01
785 983 3.495331 AGATGATATGTCGGCTCAGTCT 58.505 45.455 0.00 0.00 0.00 3.24
788 986 4.248691 TCAAGATGATATGTCGGCTCAG 57.751 45.455 0.00 0.00 0.00 3.35
789 987 4.670896 TTCAAGATGATATGTCGGCTCA 57.329 40.909 0.00 0.00 0.00 4.26
791 989 6.949352 AAATTTCAAGATGATATGTCGGCT 57.051 33.333 0.00 0.00 0.00 5.52
792 990 6.792250 CGTAAATTTCAAGATGATATGTCGGC 59.208 38.462 0.00 0.00 0.00 5.54
793 991 8.072238 TCGTAAATTTCAAGATGATATGTCGG 57.928 34.615 0.00 0.00 0.00 4.79
794 992 9.573102 CTTCGTAAATTTCAAGATGATATGTCG 57.427 33.333 0.00 0.00 0.00 4.35
799 997 8.879759 GGTGACTTCGTAAATTTCAAGATGATA 58.120 33.333 0.00 0.00 0.00 2.15
800 998 7.413000 CGGTGACTTCGTAAATTTCAAGATGAT 60.413 37.037 0.00 0.00 0.00 2.45
801 999 6.128661 CGGTGACTTCGTAAATTTCAAGATGA 60.129 38.462 0.00 0.00 0.00 2.92
802 1000 6.015504 CGGTGACTTCGTAAATTTCAAGATG 58.984 40.000 0.00 0.00 0.00 2.90
803 1001 5.699458 ACGGTGACTTCGTAAATTTCAAGAT 59.301 36.000 0.00 0.00 39.22 2.40
804 1002 5.051816 ACGGTGACTTCGTAAATTTCAAGA 58.948 37.500 0.00 0.00 39.22 3.02
805 1003 5.338614 ACGGTGACTTCGTAAATTTCAAG 57.661 39.130 0.00 0.00 39.22 3.02
806 1004 5.406175 CCTACGGTGACTTCGTAAATTTCAA 59.594 40.000 0.00 0.00 41.62 2.69
807 1005 4.925054 CCTACGGTGACTTCGTAAATTTCA 59.075 41.667 0.00 0.00 41.62 2.69
808 1006 4.201656 GCCTACGGTGACTTCGTAAATTTC 60.202 45.833 0.00 0.00 41.62 2.17
809 1007 3.681417 GCCTACGGTGACTTCGTAAATTT 59.319 43.478 0.00 0.00 41.62 1.82
810 1008 3.256558 GCCTACGGTGACTTCGTAAATT 58.743 45.455 0.00 0.00 41.62 1.82
811 1009 2.231964 TGCCTACGGTGACTTCGTAAAT 59.768 45.455 0.00 0.00 41.62 1.40
812 1010 1.612950 TGCCTACGGTGACTTCGTAAA 59.387 47.619 0.00 0.00 41.62 2.01
813 1011 1.068333 GTGCCTACGGTGACTTCGTAA 60.068 52.381 0.00 0.00 41.62 3.18
814 1012 0.523072 GTGCCTACGGTGACTTCGTA 59.477 55.000 0.00 0.00 41.38 3.43
815 1013 1.288127 GTGCCTACGGTGACTTCGT 59.712 57.895 0.00 0.00 43.64 3.85
816 1014 1.445582 GGTGCCTACGGTGACTTCG 60.446 63.158 0.00 0.00 0.00 3.79
817 1015 0.108756 GAGGTGCCTACGGTGACTTC 60.109 60.000 0.00 0.00 0.00 3.01
818 1016 1.542187 GGAGGTGCCTACGGTGACTT 61.542 60.000 0.00 0.00 0.00 3.01
819 1017 1.982938 GGAGGTGCCTACGGTGACT 60.983 63.158 0.00 0.00 0.00 3.41
820 1018 2.577593 GGAGGTGCCTACGGTGAC 59.422 66.667 0.00 0.00 0.00 3.67
829 1027 4.477975 CGTCGACGAGGAGGTGCC 62.478 72.222 33.35 0.00 43.02 5.01
830 1028 4.477975 CCGTCGACGAGGAGGTGC 62.478 72.222 37.65 0.00 43.02 5.01
831 1029 3.812019 CCCGTCGACGAGGAGGTG 61.812 72.222 37.65 19.12 43.02 4.00
832 1030 3.557903 TTCCCGTCGACGAGGAGGT 62.558 63.158 37.65 0.00 43.02 3.85
833 1031 2.749044 TTCCCGTCGACGAGGAGG 60.749 66.667 37.65 28.37 43.02 4.30
834 1032 2.484203 GTTCCCGTCGACGAGGAG 59.516 66.667 37.65 20.95 43.02 3.69
835 1033 3.425713 CGTTCCCGTCGACGAGGA 61.426 66.667 37.65 33.95 41.53 3.71
836 1034 3.730761 ACGTTCCCGTCGACGAGG 61.731 66.667 37.65 32.46 46.28 4.63
848 1046 2.249844 TTCAGTGGGAGGAAACGTTC 57.750 50.000 0.00 0.00 0.00 3.95
849 1047 2.504367 CATTCAGTGGGAGGAAACGTT 58.496 47.619 0.00 0.00 0.00 3.99
850 1048 1.882352 GCATTCAGTGGGAGGAAACGT 60.882 52.381 0.00 0.00 0.00 3.99
851 1049 0.804989 GCATTCAGTGGGAGGAAACG 59.195 55.000 0.00 0.00 0.00 3.60
852 1050 1.541588 GTGCATTCAGTGGGAGGAAAC 59.458 52.381 0.00 0.00 0.00 2.78
853 1051 1.144708 TGTGCATTCAGTGGGAGGAAA 59.855 47.619 0.00 0.00 0.00 3.13
854 1052 0.770499 TGTGCATTCAGTGGGAGGAA 59.230 50.000 0.00 0.00 0.00 3.36
855 1053 0.994247 ATGTGCATTCAGTGGGAGGA 59.006 50.000 0.00 0.00 0.00 3.71
856 1054 1.386533 GATGTGCATTCAGTGGGAGG 58.613 55.000 0.00 0.00 0.00 4.30
857 1055 1.012086 CGATGTGCATTCAGTGGGAG 58.988 55.000 0.00 0.00 0.00 4.30
858 1056 0.324614 ACGATGTGCATTCAGTGGGA 59.675 50.000 0.00 0.00 0.00 4.37
859 1057 0.729116 GACGATGTGCATTCAGTGGG 59.271 55.000 0.00 0.00 0.00 4.61
860 1058 0.371301 CGACGATGTGCATTCAGTGG 59.629 55.000 0.00 0.00 0.00 4.00
861 1059 0.371301 CCGACGATGTGCATTCAGTG 59.629 55.000 0.00 0.00 0.00 3.66
862 1060 0.246360 TCCGACGATGTGCATTCAGT 59.754 50.000 0.00 0.00 0.00 3.41
863 1061 1.358877 TTCCGACGATGTGCATTCAG 58.641 50.000 0.00 0.00 0.00 3.02
864 1062 1.802069 TTTCCGACGATGTGCATTCA 58.198 45.000 0.00 0.00 0.00 2.57
865 1063 2.286418 GGATTTCCGACGATGTGCATTC 60.286 50.000 0.00 0.00 0.00 2.67
866 1064 1.670811 GGATTTCCGACGATGTGCATT 59.329 47.619 0.00 0.00 0.00 3.56
867 1065 1.134401 AGGATTTCCGACGATGTGCAT 60.134 47.619 0.00 0.00 42.08 3.96
868 1066 0.249120 AGGATTTCCGACGATGTGCA 59.751 50.000 0.00 0.00 42.08 4.57
869 1067 0.652592 CAGGATTTCCGACGATGTGC 59.347 55.000 0.00 0.00 42.08 4.57
870 1068 2.293677 TCAGGATTTCCGACGATGTG 57.706 50.000 0.00 0.00 42.08 3.21
871 1069 3.328382 TTTCAGGATTTCCGACGATGT 57.672 42.857 0.00 0.00 42.08 3.06
872 1070 5.984233 TTATTTCAGGATTTCCGACGATG 57.016 39.130 0.00 0.00 42.08 3.84
873 1071 6.525629 AGATTATTTCAGGATTTCCGACGAT 58.474 36.000 0.00 0.00 42.08 3.73
874 1072 5.914033 AGATTATTTCAGGATTTCCGACGA 58.086 37.500 0.00 0.00 42.08 4.20
875 1073 7.145985 TCTAGATTATTTCAGGATTTCCGACG 58.854 38.462 0.00 0.00 42.08 5.12
876 1074 8.888579 TTCTAGATTATTTCAGGATTTCCGAC 57.111 34.615 0.00 0.00 42.08 4.79
889 1087 9.884465 GTGCTCGCATTTATTTCTAGATTATTT 57.116 29.630 0.00 0.00 0.00 1.40
890 1088 8.507249 GGTGCTCGCATTTATTTCTAGATTATT 58.493 33.333 0.00 0.00 0.00 1.40
891 1089 7.661437 TGGTGCTCGCATTTATTTCTAGATTAT 59.339 33.333 0.00 0.00 0.00 1.28
892 1090 6.989759 TGGTGCTCGCATTTATTTCTAGATTA 59.010 34.615 0.00 0.00 0.00 1.75
893 1091 5.822519 TGGTGCTCGCATTTATTTCTAGATT 59.177 36.000 0.00 0.00 0.00 2.40
894 1092 5.368145 TGGTGCTCGCATTTATTTCTAGAT 58.632 37.500 0.00 0.00 0.00 1.98
895 1093 4.765273 TGGTGCTCGCATTTATTTCTAGA 58.235 39.130 0.00 0.00 0.00 2.43
896 1094 5.294306 TCTTGGTGCTCGCATTTATTTCTAG 59.706 40.000 0.00 0.00 0.00 2.43
897 1095 5.064707 GTCTTGGTGCTCGCATTTATTTCTA 59.935 40.000 0.00 0.00 0.00 2.10
898 1096 4.009675 TCTTGGTGCTCGCATTTATTTCT 58.990 39.130 0.00 0.00 0.00 2.52
899 1097 4.098416 GTCTTGGTGCTCGCATTTATTTC 58.902 43.478 0.00 0.00 0.00 2.17
900 1098 3.758554 AGTCTTGGTGCTCGCATTTATTT 59.241 39.130 0.00 0.00 0.00 1.40
901 1099 3.347216 AGTCTTGGTGCTCGCATTTATT 58.653 40.909 0.00 0.00 0.00 1.40
902 1100 2.991250 AGTCTTGGTGCTCGCATTTAT 58.009 42.857 0.00 0.00 0.00 1.40
903 1101 2.472695 AGTCTTGGTGCTCGCATTTA 57.527 45.000 0.00 0.00 0.00 1.40
904 1102 1.267806 CAAGTCTTGGTGCTCGCATTT 59.732 47.619 4.52 0.00 0.00 2.32
905 1103 0.877071 CAAGTCTTGGTGCTCGCATT 59.123 50.000 4.52 0.00 0.00 3.56
906 1104 0.035317 TCAAGTCTTGGTGCTCGCAT 59.965 50.000 12.66 0.00 0.00 4.73
907 1105 0.179059 TTCAAGTCTTGGTGCTCGCA 60.179 50.000 12.66 0.00 0.00 5.10
908 1106 0.235926 GTTCAAGTCTTGGTGCTCGC 59.764 55.000 12.66 0.00 0.00 5.03
909 1107 0.868406 GGTTCAAGTCTTGGTGCTCG 59.132 55.000 12.66 0.00 0.00 5.03
910 1108 1.202818 AGGGTTCAAGTCTTGGTGCTC 60.203 52.381 12.66 3.68 0.00 4.26
911 1109 0.846693 AGGGTTCAAGTCTTGGTGCT 59.153 50.000 12.66 0.00 0.00 4.40
912 1110 2.224548 ACTAGGGTTCAAGTCTTGGTGC 60.225 50.000 12.66 3.57 0.00 5.01
913 1111 3.665190 GACTAGGGTTCAAGTCTTGGTG 58.335 50.000 12.66 0.00 39.24 4.17
914 1112 2.299297 CGACTAGGGTTCAAGTCTTGGT 59.701 50.000 12.66 0.71 40.00 3.67
915 1113 2.353803 CCGACTAGGGTTCAAGTCTTGG 60.354 54.545 12.66 0.00 40.00 3.61
916 1114 2.931320 GCCGACTAGGGTTCAAGTCTTG 60.931 54.545 6.21 6.21 40.00 3.02
917 1115 1.275573 GCCGACTAGGGTTCAAGTCTT 59.724 52.381 0.00 0.00 40.00 3.01
918 1116 0.896226 GCCGACTAGGGTTCAAGTCT 59.104 55.000 0.00 0.00 40.00 3.24
919 1117 3.437746 GCCGACTAGGGTTCAAGTC 57.562 57.895 0.00 0.00 41.48 3.01
927 1125 1.186267 GGTATCCCAGCCGACTAGGG 61.186 65.000 0.00 0.76 44.22 3.53
928 1126 0.469331 TGGTATCCCAGCCGACTAGG 60.469 60.000 0.00 0.00 38.45 3.02
929 1127 0.674534 GTGGTATCCCAGCCGACTAG 59.325 60.000 0.00 0.00 42.94 2.57
930 1128 0.032912 TGTGGTATCCCAGCCGACTA 60.033 55.000 0.00 0.00 42.94 2.59
931 1129 0.907704 TTGTGGTATCCCAGCCGACT 60.908 55.000 0.00 0.00 42.94 4.18
932 1130 0.180406 ATTGTGGTATCCCAGCCGAC 59.820 55.000 0.00 0.00 42.94 4.79
933 1131 0.468226 GATTGTGGTATCCCAGCCGA 59.532 55.000 0.00 0.00 42.94 5.54
934 1132 0.535102 GGATTGTGGTATCCCAGCCG 60.535 60.000 0.00 0.00 42.94 5.52
935 1133 3.421567 GGATTGTGGTATCCCAGCC 57.578 57.895 0.00 0.00 42.94 4.85
940 1138 4.862371 TGGTTAAAGGGATTGTGGTATCC 58.138 43.478 0.00 0.00 42.84 2.59
941 1139 6.605594 TGAATGGTTAAAGGGATTGTGGTATC 59.394 38.462 0.00 0.00 0.00 2.24
942 1140 6.498538 TGAATGGTTAAAGGGATTGTGGTAT 58.501 36.000 0.00 0.00 0.00 2.73
943 1141 5.893500 TGAATGGTTAAAGGGATTGTGGTA 58.106 37.500 0.00 0.00 0.00 3.25
944 1142 4.746466 TGAATGGTTAAAGGGATTGTGGT 58.254 39.130 0.00 0.00 0.00 4.16
945 1143 5.478407 GTTGAATGGTTAAAGGGATTGTGG 58.522 41.667 0.00 0.00 0.00 4.17
946 1144 5.011533 TGGTTGAATGGTTAAAGGGATTGTG 59.988 40.000 0.00 0.00 0.00 3.33
947 1145 5.011635 GTGGTTGAATGGTTAAAGGGATTGT 59.988 40.000 0.00 0.00 0.00 2.71
948 1146 5.011533 TGTGGTTGAATGGTTAAAGGGATTG 59.988 40.000 0.00 0.00 0.00 2.67
949 1147 5.151454 TGTGGTTGAATGGTTAAAGGGATT 58.849 37.500 0.00 0.00 0.00 3.01
950 1148 4.746466 TGTGGTTGAATGGTTAAAGGGAT 58.254 39.130 0.00 0.00 0.00 3.85
951 1149 4.148838 CTGTGGTTGAATGGTTAAAGGGA 58.851 43.478 0.00 0.00 0.00 4.20
952 1150 3.258123 CCTGTGGTTGAATGGTTAAAGGG 59.742 47.826 0.00 0.00 0.00 3.95
953 1151 3.895041 ACCTGTGGTTGAATGGTTAAAGG 59.105 43.478 0.00 0.00 27.29 3.11
954 1152 5.529581 AACCTGTGGTTGAATGGTTAAAG 57.470 39.130 0.71 0.00 45.07 1.85
969 1167 3.870419 CCAAAAATGTGAACCAACCTGTG 59.130 43.478 0.00 0.00 0.00 3.66
970 1168 3.772025 TCCAAAAATGTGAACCAACCTGT 59.228 39.130 0.00 0.00 0.00 4.00
971 1169 4.119136 GTCCAAAAATGTGAACCAACCTG 58.881 43.478 0.00 0.00 0.00 4.00
972 1170 4.030216 AGTCCAAAAATGTGAACCAACCT 58.970 39.130 0.00 0.00 0.00 3.50
973 1171 4.368315 GAGTCCAAAAATGTGAACCAACC 58.632 43.478 0.00 0.00 0.00 3.77
974 1172 4.041723 CGAGTCCAAAAATGTGAACCAAC 58.958 43.478 0.00 0.00 0.00 3.77
975 1173 3.697045 ACGAGTCCAAAAATGTGAACCAA 59.303 39.130 0.00 0.00 0.00 3.67
976 1174 3.283751 ACGAGTCCAAAAATGTGAACCA 58.716 40.909 0.00 0.00 0.00 3.67
977 1175 3.982576 ACGAGTCCAAAAATGTGAACC 57.017 42.857 0.00 0.00 0.00 3.62
978 1176 4.915704 TCAACGAGTCCAAAAATGTGAAC 58.084 39.130 0.00 0.00 0.00 3.18
979 1177 5.766150 ATCAACGAGTCCAAAAATGTGAA 57.234 34.783 0.00 0.00 0.00 3.18
980 1178 8.731275 ATATATCAACGAGTCCAAAAATGTGA 57.269 30.769 0.00 0.00 0.00 3.58
984 1182 8.730680 GCCATATATATCAACGAGTCCAAAAAT 58.269 33.333 0.00 0.00 0.00 1.82
985 1183 7.174253 GGCCATATATATCAACGAGTCCAAAAA 59.826 37.037 0.00 0.00 0.00 1.94
995 1193 8.908786 ATCCTTTATGGCCATATATATCAACG 57.091 34.615 25.95 8.76 35.26 4.10
1109 1308 1.134759 GCTTAGGGGAGACGAAAGGAC 60.135 57.143 0.00 0.00 0.00 3.85
1212 1464 0.390603 CTGGGCGTACGATGGTTTCA 60.391 55.000 21.65 4.64 0.00 2.69
1285 1547 4.719616 GCGTCGTCGTTTGCTGCC 62.720 66.667 3.66 0.00 39.49 4.85
1338 1607 1.833049 CGGCCTACTCCTCGGGATT 60.833 63.158 0.00 0.00 0.00 3.01
1476 1745 1.298014 GACTGTGAAGGGCTGGGAG 59.702 63.158 0.00 0.00 0.00 4.30
1611 1883 2.552315 GCCCGTGAAACAGAATCTGAAA 59.448 45.455 18.20 0.00 35.74 2.69
1637 1909 3.680920 TTCGCCTCCTCCTCCTCCC 62.681 68.421 0.00 0.00 0.00 4.30
1665 1937 2.650196 GATGCCAACGCCAGCAAA 59.350 55.556 0.00 0.00 43.36 3.68
1702 1974 2.886134 TACACACCCAGCCGTTCCC 61.886 63.158 0.00 0.00 0.00 3.97
1708 1980 0.250166 AACTTCGTACACACCCAGCC 60.250 55.000 0.00 0.00 0.00 4.85
1816 2097 2.030958 CCGGGTTGTACGCAGAACC 61.031 63.158 6.14 6.14 45.33 3.62
1821 2102 4.992511 GCCACCGGGTTGTACGCA 62.993 66.667 6.32 0.00 36.17 5.24
1825 2106 2.648143 CGTAGGCCACCGGGTTGTA 61.648 63.158 6.32 0.00 36.17 2.41
1831 2124 3.834799 GGAGACGTAGGCCACCGG 61.835 72.222 17.00 0.00 0.00 5.28
1890 2183 2.185608 GCGCCCTTCTCAGTCTCC 59.814 66.667 0.00 0.00 0.00 3.71
2037 2348 1.421268 TCCATGTCTTCCAAGTGCACT 59.579 47.619 15.25 15.25 0.00 4.40
2264 2582 3.070576 GCCCCTCACAATGGTGCC 61.071 66.667 0.00 0.00 44.87 5.01
2349 2667 3.330701 AGCTTTCCCACAGATACTGGAAA 59.669 43.478 0.00 0.00 42.86 3.13
2356 2674 0.255890 GGGCAGCTTTCCCACAGATA 59.744 55.000 14.50 0.00 43.37 1.98
2413 2731 6.997655 GACATCATCCATCACTCACCTAATA 58.002 40.000 0.00 0.00 0.00 0.98
2457 2778 8.095452 ACATTAGTCTAGAAACCCAGATTCAT 57.905 34.615 0.00 0.00 0.00 2.57
2533 2884 8.286191 AGGCTAATTTTTCATCTCGATCTTTT 57.714 30.769 0.00 0.00 0.00 2.27
2607 3343 4.332543 TGATTCTGACGCATGTTATGGTTC 59.667 41.667 0.00 0.00 0.00 3.62
2614 3350 2.625737 CCTCTGATTCTGACGCATGTT 58.374 47.619 0.00 0.00 0.00 2.71
2638 3374 3.989817 GCCTAAAAACCTGAGCATTTGTG 59.010 43.478 0.00 0.00 0.00 3.33
2674 3436 4.963953 CGCCGAATGCTTAAATAAGTTCAG 59.036 41.667 2.42 0.00 38.05 3.02
2682 3444 0.663153 GGAGCGCCGAATGCTTAAAT 59.337 50.000 2.29 0.00 44.18 1.40
2784 4787 5.784750 TGTGATTTCTACTTTGCATCTCG 57.215 39.130 0.00 0.00 0.00 4.04
2903 4909 1.396996 GTGTTTGTAGATGCGCGGATT 59.603 47.619 16.17 7.52 0.00 3.01
2950 4957 4.900635 AGTTTTCAGGACATGTGTCAAC 57.099 40.909 1.15 9.55 46.47 3.18
2952 4959 4.455533 GCATAGTTTTCAGGACATGTGTCA 59.544 41.667 1.15 0.00 46.47 3.58
2957 4964 5.181009 TCTCTGCATAGTTTTCAGGACATG 58.819 41.667 0.00 0.00 0.00 3.21
2980 4987 1.388065 CCGACGAGCTCTTGGATCCT 61.388 60.000 14.23 0.00 0.00 3.24
2995 5002 4.288531 CGGATACTTAATCTGTGACCGAC 58.711 47.826 0.00 0.00 38.56 4.79
3004 5011 8.757982 TTTCTAGTACCACGGATACTTAATCT 57.242 34.615 1.51 0.00 34.66 2.40
3010 5017 6.404074 CGTCTTTTTCTAGTACCACGGATACT 60.404 42.308 0.00 0.00 36.79 2.12
3017 5024 4.748600 AGCAACGTCTTTTTCTAGTACCAC 59.251 41.667 0.00 0.00 0.00 4.16
3028 5035 1.355210 CGCCACAGCAACGTCTTTT 59.645 52.632 0.00 0.00 39.83 2.27
3054 5061 3.181495 GGCGAGACAGATATCTAATCGGG 60.181 52.174 23.70 14.85 0.00 5.14
3096 5103 1.805254 GCCATCGATGCTGCTTGTT 59.195 52.632 20.25 0.00 0.00 2.83
3104 5111 0.040958 GATTCCAACGCCATCGATGC 60.041 55.000 20.25 13.87 37.20 3.91
3121 5128 2.477880 GGTGAATTCGCCAACCGAT 58.522 52.632 29.17 0.00 46.81 4.18
3161 5168 9.096160 CATGTCCTATTATCTGATGAACATAGC 57.904 37.037 0.00 0.00 0.00 2.97
3268 5275 8.964476 ATTAGTACTTTGGATGTTCGATGAAT 57.036 30.769 0.00 0.00 0.00 2.57
3291 5298 1.956477 GGGATGGCTTTGCGTGATATT 59.044 47.619 0.00 0.00 0.00 1.28
3307 5314 4.590647 CACTACTATCAGATGGTGTGGGAT 59.409 45.833 9.63 0.00 0.00 3.85
3323 5330 1.191535 ACAAGCCCGCATCACTACTA 58.808 50.000 0.00 0.00 0.00 1.82
3459 5467 5.926542 TGAGGAAATTCTCACTCTAAACACG 59.073 40.000 0.00 0.00 38.70 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.