Multiple sequence alignment - TraesCS6D01G350900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G350900 chr6D 100.000 3056 0 0 1 3056 448364381 448367436 0.000000e+00 5644
1 TraesCS6D01G350900 chr6D 78.405 1329 212 37 1027 2316 448160193 448158901 0.000000e+00 795
2 TraesCS6D01G350900 chr6D 78.488 1111 202 22 961 2044 448429028 448430128 0.000000e+00 693
3 TraesCS6D01G350900 chr6D 94.614 427 21 2 1 425 100489553 100489979 0.000000e+00 660
4 TraesCS6D01G350900 chr6D 77.215 1106 213 29 970 2042 448086658 448085559 7.240000e-171 610
5 TraesCS6D01G350900 chr6D 85.598 368 50 2 1679 2043 448032554 448032187 1.720000e-102 383
6 TraesCS6D01G350900 chr6D 84.324 370 35 14 2602 2951 448432865 448433231 1.050000e-89 340
7 TraesCS6D01G350900 chr6D 74.695 573 119 17 1061 1617 448034334 448033772 6.590000e-57 231
8 TraesCS6D01G350900 chr6D 78.363 342 73 1 978 1319 448415131 448415471 1.430000e-53 220
9 TraesCS6D01G350900 chr6A 96.264 1392 31 9 724 2102 594530575 594529192 0.000000e+00 2263
10 TraesCS6D01G350900 chr6A 94.754 896 30 7 2173 3056 594529193 594528303 0.000000e+00 1378
11 TraesCS6D01G350900 chr6A 78.957 1112 199 21 961 2046 594516411 594515309 0.000000e+00 725
12 TraesCS6D01G350900 chr6A 82.281 570 65 15 2429 2972 594514781 594514222 7.720000e-126 460
13 TraesCS6D01G350900 chr6A 72.437 595 138 21 1361 1933 6895431 6896021 1.880000e-37 167
14 TraesCS6D01G350900 chr6A 90.566 106 6 2 483 588 594530940 594530839 1.480000e-28 137
15 TraesCS6D01G350900 chr6A 94.186 86 5 0 613 698 594530844 594530759 6.880000e-27 132
16 TraesCS6D01G350900 chr6B 79.335 1113 190 24 961 2044 679285002 679286103 0.000000e+00 745
17 TraesCS6D01G350900 chr6B 79.335 1113 190 24 961 2044 679330400 679329299 0.000000e+00 745
18 TraesCS6D01G350900 chr6B 77.748 1128 210 27 936 2037 678746054 678744942 0.000000e+00 654
19 TraesCS6D01G350900 chr6B 81.368 687 110 11 1375 2043 679256079 679256765 7.450000e-151 544
20 TraesCS6D01G350900 chr6B 78.979 666 119 7 1397 2044 678818953 678818291 4.680000e-118 435
21 TraesCS6D01G350900 chr2D 97.406 424 11 0 1 424 8149961 8149538 0.000000e+00 723
22 TraesCS6D01G350900 chr2D 96.941 425 13 0 1 425 182772877 182772453 0.000000e+00 713
23 TraesCS6D01G350900 chr1D 97.176 425 12 0 1 425 74410973 74411397 0.000000e+00 719
24 TraesCS6D01G350900 chr4D 96.028 428 15 1 1 426 499723367 499723794 0.000000e+00 695
25 TraesCS6D01G350900 chr7D 95.550 427 17 2 1 426 223868022 223868447 0.000000e+00 682
26 TraesCS6D01G350900 chr7D 94.700 434 22 1 1 433 478773520 478773087 0.000000e+00 673
27 TraesCS6D01G350900 chr3D 95.550 427 17 2 1 426 571550123 571550548 0.000000e+00 682
28 TraesCS6D01G350900 chrUn 95.070 426 20 1 1 426 345776732 345777156 0.000000e+00 669


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G350900 chr6D 448364381 448367436 3055 False 5644.0 5644 100.0000 1 3056 1 chr6D.!!$F2 3055
1 TraesCS6D01G350900 chr6D 448158901 448160193 1292 True 795.0 795 78.4050 1027 2316 1 chr6D.!!$R2 1289
2 TraesCS6D01G350900 chr6D 448085559 448086658 1099 True 610.0 610 77.2150 970 2042 1 chr6D.!!$R1 1072
3 TraesCS6D01G350900 chr6D 448429028 448433231 4203 False 516.5 693 81.4060 961 2951 2 chr6D.!!$F4 1990
4 TraesCS6D01G350900 chr6D 448032187 448034334 2147 True 307.0 383 80.1465 1061 2043 2 chr6D.!!$R3 982
5 TraesCS6D01G350900 chr6A 594528303 594530940 2637 True 977.5 2263 93.9425 483 3056 4 chr6A.!!$R2 2573
6 TraesCS6D01G350900 chr6A 594514222 594516411 2189 True 592.5 725 80.6190 961 2972 2 chr6A.!!$R1 2011
7 TraesCS6D01G350900 chr6B 679285002 679286103 1101 False 745.0 745 79.3350 961 2044 1 chr6B.!!$F2 1083
8 TraesCS6D01G350900 chr6B 679329299 679330400 1101 True 745.0 745 79.3350 961 2044 1 chr6B.!!$R3 1083
9 TraesCS6D01G350900 chr6B 678744942 678746054 1112 True 654.0 654 77.7480 936 2037 1 chr6B.!!$R1 1101
10 TraesCS6D01G350900 chr6B 679256079 679256765 686 False 544.0 544 81.3680 1375 2043 1 chr6B.!!$F1 668
11 TraesCS6D01G350900 chr6B 678818291 678818953 662 True 435.0 435 78.9790 1397 2044 1 chr6B.!!$R2 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
61 62 0.034477 ATTTCCTAACCACCCTGCGG 60.034 55.0 0.0 0.0 0.0 5.69 F
346 347 0.103937 TTGTTTGCTGCTTTTCCGGG 59.896 50.0 0.0 0.0 0.0 5.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1769 3155 1.215244 CAGATGCTGGCATACGACTG 58.785 55.0 8.11 7.64 36.7 3.51 R
2070 3471 0.109153 ACAACACTCAGAGGCATGCA 59.891 50.0 21.36 0.00 0.0 3.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.003478 GGCTATTTGGACGACGCG 58.997 61.111 3.53 3.53 0.00 6.01
18 19 2.320044 GCTATTTGGACGACGCGC 59.680 61.111 5.73 0.00 0.00 6.86
19 20 2.449525 GCTATTTGGACGACGCGCA 61.450 57.895 5.73 0.00 0.00 6.09
20 21 1.962092 GCTATTTGGACGACGCGCAA 61.962 55.000 5.73 0.00 0.00 4.85
21 22 0.650512 CTATTTGGACGACGCGCAAT 59.349 50.000 5.73 0.00 0.00 3.56
22 23 1.855978 CTATTTGGACGACGCGCAATA 59.144 47.619 5.73 0.03 0.00 1.90
23 24 1.080298 ATTTGGACGACGCGCAATAA 58.920 45.000 5.73 0.00 0.00 1.40
24 25 0.866427 TTTGGACGACGCGCAATAAA 59.134 45.000 5.73 0.00 0.00 1.40
25 26 0.866427 TTGGACGACGCGCAATAAAA 59.134 45.000 5.73 0.00 0.00 1.52
26 27 1.080298 TGGACGACGCGCAATAAAAT 58.920 45.000 5.73 0.00 0.00 1.82
27 28 1.465387 TGGACGACGCGCAATAAAATT 59.535 42.857 5.73 0.00 0.00 1.82
28 29 2.671888 TGGACGACGCGCAATAAAATTA 59.328 40.909 5.73 0.00 0.00 1.40
29 30 3.024313 GGACGACGCGCAATAAAATTAC 58.976 45.455 5.73 0.00 0.00 1.89
30 31 2.685247 ACGACGCGCAATAAAATTACG 58.315 42.857 5.73 0.00 0.00 3.18
31 32 2.345041 ACGACGCGCAATAAAATTACGA 59.655 40.909 5.73 0.00 0.00 3.43
32 33 3.000523 ACGACGCGCAATAAAATTACGAT 59.999 39.130 5.73 0.00 0.00 3.73
33 34 3.957535 CGACGCGCAATAAAATTACGATT 59.042 39.130 5.73 0.00 0.00 3.34
34 35 4.144309 CGACGCGCAATAAAATTACGATTG 60.144 41.667 5.73 3.61 34.37 2.67
35 36 4.899516 ACGCGCAATAAAATTACGATTGA 58.100 34.783 5.73 0.00 33.28 2.57
36 37 4.961551 ACGCGCAATAAAATTACGATTGAG 59.038 37.500 5.73 8.03 33.28 3.02
37 38 5.194657 CGCGCAATAAAATTACGATTGAGA 58.805 37.500 8.75 0.00 33.70 3.27
38 39 5.675012 CGCGCAATAAAATTACGATTGAGAA 59.325 36.000 8.75 0.00 33.70 2.87
39 40 6.193776 CGCGCAATAAAATTACGATTGAGAAA 59.806 34.615 8.75 0.00 33.70 2.52
40 41 7.253158 CGCGCAATAAAATTACGATTGAGAAAA 60.253 33.333 8.75 0.00 33.70 2.29
41 42 8.369588 GCGCAATAAAATTACGATTGAGAAAAA 58.630 29.630 0.30 0.00 33.70 1.94
59 60 4.617253 AAAAATTTCCTAACCACCCTGC 57.383 40.909 0.00 0.00 0.00 4.85
60 61 1.834188 AATTTCCTAACCACCCTGCG 58.166 50.000 0.00 0.00 0.00 5.18
61 62 0.034477 ATTTCCTAACCACCCTGCGG 60.034 55.000 0.00 0.00 0.00 5.69
62 63 1.128809 TTTCCTAACCACCCTGCGGA 61.129 55.000 0.00 0.00 0.00 5.54
63 64 0.912487 TTCCTAACCACCCTGCGGAT 60.912 55.000 0.00 0.00 0.00 4.18
64 65 1.153168 CCTAACCACCCTGCGGATG 60.153 63.158 0.00 0.00 0.00 3.51
65 66 1.602237 CTAACCACCCTGCGGATGT 59.398 57.895 0.00 0.00 0.00 3.06
66 67 0.744414 CTAACCACCCTGCGGATGTG 60.744 60.000 0.00 0.67 0.00 3.21
67 68 1.195442 TAACCACCCTGCGGATGTGA 61.195 55.000 14.55 0.00 31.66 3.58
68 69 1.852157 AACCACCCTGCGGATGTGAT 61.852 55.000 14.55 0.00 31.66 3.06
69 70 1.524621 CCACCCTGCGGATGTGATC 60.525 63.158 14.55 0.00 31.66 2.92
70 71 1.524002 CACCCTGCGGATGTGATCT 59.476 57.895 8.93 0.00 31.66 2.75
71 72 0.107508 CACCCTGCGGATGTGATCTT 60.108 55.000 8.93 0.00 31.66 2.40
72 73 0.179000 ACCCTGCGGATGTGATCTTC 59.821 55.000 0.00 0.00 0.00 2.87
73 74 0.178767 CCCTGCGGATGTGATCTTCA 59.821 55.000 0.00 0.00 0.00 3.02
74 75 1.407299 CCCTGCGGATGTGATCTTCAA 60.407 52.381 0.00 0.00 0.00 2.69
75 76 2.358957 CCTGCGGATGTGATCTTCAAA 58.641 47.619 0.00 0.00 0.00 2.69
76 77 2.947652 CCTGCGGATGTGATCTTCAAAT 59.052 45.455 0.00 0.00 0.00 2.32
77 78 3.242969 CCTGCGGATGTGATCTTCAAATG 60.243 47.826 0.00 0.00 0.00 2.32
78 79 3.346315 TGCGGATGTGATCTTCAAATGT 58.654 40.909 0.00 0.00 0.00 2.71
79 80 3.374988 TGCGGATGTGATCTTCAAATGTC 59.625 43.478 0.00 0.00 0.00 3.06
80 81 3.374988 GCGGATGTGATCTTCAAATGTCA 59.625 43.478 0.00 0.00 0.00 3.58
81 82 4.728882 GCGGATGTGATCTTCAAATGTCAC 60.729 45.833 0.00 0.00 40.93 3.67
82 83 4.201851 CGGATGTGATCTTCAAATGTCACC 60.202 45.833 0.00 0.00 40.07 4.02
83 84 4.946157 GGATGTGATCTTCAAATGTCACCT 59.054 41.667 0.00 0.00 40.07 4.00
84 85 5.416952 GGATGTGATCTTCAAATGTCACCTT 59.583 40.000 0.00 0.00 40.07 3.50
85 86 6.071728 GGATGTGATCTTCAAATGTCACCTTT 60.072 38.462 0.00 0.00 40.07 3.11
86 87 6.713762 TGTGATCTTCAAATGTCACCTTTT 57.286 33.333 0.00 0.00 40.07 2.27
87 88 6.738114 TGTGATCTTCAAATGTCACCTTTTC 58.262 36.000 0.00 0.00 40.07 2.29
88 89 6.547141 TGTGATCTTCAAATGTCACCTTTTCT 59.453 34.615 0.00 0.00 40.07 2.52
89 90 7.068593 TGTGATCTTCAAATGTCACCTTTTCTT 59.931 33.333 0.00 0.00 40.07 2.52
90 91 8.567948 GTGATCTTCAAATGTCACCTTTTCTTA 58.432 33.333 0.00 0.00 35.98 2.10
91 92 8.567948 TGATCTTCAAATGTCACCTTTTCTTAC 58.432 33.333 0.00 0.00 0.00 2.34
92 93 7.873719 TCTTCAAATGTCACCTTTTCTTACA 57.126 32.000 0.00 0.00 0.00 2.41
93 94 7.930217 TCTTCAAATGTCACCTTTTCTTACAG 58.070 34.615 0.00 0.00 0.00 2.74
94 95 7.773224 TCTTCAAATGTCACCTTTTCTTACAGA 59.227 33.333 0.00 0.00 0.00 3.41
95 96 7.259290 TCAAATGTCACCTTTTCTTACAGAC 57.741 36.000 0.00 0.00 0.00 3.51
96 97 5.924475 AATGTCACCTTTTCTTACAGACG 57.076 39.130 0.00 0.00 0.00 4.18
97 98 4.395959 TGTCACCTTTTCTTACAGACGT 57.604 40.909 0.00 0.00 0.00 4.34
98 99 4.116961 TGTCACCTTTTCTTACAGACGTG 58.883 43.478 0.00 0.00 0.00 4.49
99 100 3.493503 GTCACCTTTTCTTACAGACGTGG 59.506 47.826 0.00 0.00 0.00 4.94
100 101 3.385433 TCACCTTTTCTTACAGACGTGGA 59.615 43.478 0.00 0.00 0.00 4.02
101 102 3.493503 CACCTTTTCTTACAGACGTGGAC 59.506 47.826 0.00 0.00 0.00 4.02
102 103 3.387050 ACCTTTTCTTACAGACGTGGACT 59.613 43.478 0.00 0.00 0.00 3.85
103 104 3.988517 CCTTTTCTTACAGACGTGGACTC 59.011 47.826 0.00 0.00 0.00 3.36
104 105 3.655276 TTTCTTACAGACGTGGACTCC 57.345 47.619 0.00 0.00 0.00 3.85
105 106 1.162698 TCTTACAGACGTGGACTCCG 58.837 55.000 0.00 0.00 0.00 4.63
106 107 0.456312 CTTACAGACGTGGACTCCGC 60.456 60.000 0.00 0.00 0.00 5.54
107 108 0.892358 TTACAGACGTGGACTCCGCT 60.892 55.000 7.06 0.00 0.00 5.52
108 109 1.583495 TACAGACGTGGACTCCGCTG 61.583 60.000 7.06 6.35 36.35 5.18
109 110 3.374402 AGACGTGGACTCCGCTGG 61.374 66.667 7.06 0.00 0.00 4.85
110 111 4.436998 GACGTGGACTCCGCTGGG 62.437 72.222 7.06 0.00 0.00 4.45
113 114 3.319198 GTGGACTCCGCTGGGGAA 61.319 66.667 14.81 0.00 46.61 3.97
114 115 3.003173 TGGACTCCGCTGGGGAAG 61.003 66.667 14.81 10.92 46.61 3.46
115 116 3.787001 GGACTCCGCTGGGGAAGG 61.787 72.222 14.81 6.68 46.61 3.46
116 117 2.683933 GACTCCGCTGGGGAAGGA 60.684 66.667 14.81 0.00 46.61 3.36
118 119 4.168291 CTCCGCTGGGGAAGGAGC 62.168 72.222 14.81 0.00 46.61 4.70
123 124 3.854669 CTGGGGAAGGAGCGCGAT 61.855 66.667 12.10 1.23 0.00 4.58
124 125 4.161295 TGGGGAAGGAGCGCGATG 62.161 66.667 12.10 0.00 0.00 3.84
140 141 4.067913 TGCTGAGCGCATGTCGGA 62.068 61.111 11.47 0.00 45.47 4.55
141 142 3.260483 GCTGAGCGCATGTCGGAG 61.260 66.667 11.47 0.00 38.92 4.63
142 143 2.584418 CTGAGCGCATGTCGGAGG 60.584 66.667 11.47 0.00 38.94 4.30
143 144 4.819761 TGAGCGCATGTCGGAGGC 62.820 66.667 11.47 0.00 38.94 4.70
147 148 3.274586 CGCATGTCGGAGGCCATG 61.275 66.667 5.01 0.00 39.22 3.66
148 149 2.903855 GCATGTCGGAGGCCATGG 60.904 66.667 7.63 7.63 37.60 3.66
149 150 2.903855 CATGTCGGAGGCCATGGC 60.904 66.667 29.47 29.47 34.98 4.40
150 151 4.552365 ATGTCGGAGGCCATGGCG 62.552 66.667 29.90 16.49 43.06 5.69
159 160 4.918129 GCCATGGCGCGCATCAAG 62.918 66.667 34.42 18.82 0.00 3.02
160 161 3.204119 CCATGGCGCGCATCAAGA 61.204 61.111 34.42 9.05 0.00 3.02
161 162 2.023741 CATGGCGCGCATCAAGAC 59.976 61.111 34.42 14.17 0.00 3.01
162 163 2.124983 ATGGCGCGCATCAAGACT 60.125 55.556 34.42 4.27 0.00 3.24
163 164 1.143838 ATGGCGCGCATCAAGACTA 59.856 52.632 34.42 7.05 0.00 2.59
164 165 0.250038 ATGGCGCGCATCAAGACTAT 60.250 50.000 34.42 9.08 0.00 2.12
165 166 0.875908 TGGCGCGCATCAAGACTATC 60.876 55.000 34.42 11.16 0.00 2.08
166 167 1.560860 GGCGCGCATCAAGACTATCC 61.561 60.000 34.42 6.39 0.00 2.59
167 168 0.875908 GCGCGCATCAAGACTATCCA 60.876 55.000 29.10 0.00 0.00 3.41
168 169 1.135046 CGCGCATCAAGACTATCCAG 58.865 55.000 8.75 0.00 0.00 3.86
169 170 1.506493 GCGCATCAAGACTATCCAGG 58.494 55.000 0.30 0.00 0.00 4.45
170 171 1.202580 GCGCATCAAGACTATCCAGGT 60.203 52.381 0.30 0.00 0.00 4.00
171 172 2.477825 CGCATCAAGACTATCCAGGTG 58.522 52.381 0.00 0.00 0.00 4.00
172 173 2.101415 CGCATCAAGACTATCCAGGTGA 59.899 50.000 0.00 0.00 0.00 4.02
173 174 3.244009 CGCATCAAGACTATCCAGGTGAT 60.244 47.826 0.00 0.00 37.49 3.06
174 175 4.063689 GCATCAAGACTATCCAGGTGATG 58.936 47.826 8.86 8.86 39.85 3.07
180 181 3.141083 AGACTATCCAGGTGATGGCTAGA 59.859 47.826 10.82 0.00 46.58 2.43
181 182 3.235200 ACTATCCAGGTGATGGCTAGAC 58.765 50.000 10.82 0.00 46.58 2.59
182 183 3.234353 CTATCCAGGTGATGGCTAGACA 58.766 50.000 0.00 0.00 46.58 3.41
183 184 3.643320 CTATCCAGGTGATGGCTAGACAA 59.357 47.826 0.13 0.00 46.58 3.18
184 185 2.322355 CCAGGTGATGGCTAGACAAG 57.678 55.000 0.13 0.00 43.83 3.16
185 186 1.833630 CCAGGTGATGGCTAGACAAGA 59.166 52.381 0.13 0.00 43.83 3.02
186 187 2.419297 CCAGGTGATGGCTAGACAAGAC 60.419 54.545 0.13 1.51 43.83 3.01
192 193 0.240145 TGGCTAGACAAGACACGACG 59.760 55.000 0.00 0.00 38.78 5.12
193 194 0.520404 GGCTAGACAAGACACGACGA 59.480 55.000 0.00 0.00 31.12 4.20
194 195 1.604396 GCTAGACAAGACACGACGAC 58.396 55.000 0.00 0.00 0.00 4.34
195 196 1.197264 GCTAGACAAGACACGACGACT 59.803 52.381 0.00 0.00 0.00 4.18
196 197 2.725452 GCTAGACAAGACACGACGACTC 60.725 54.545 0.00 0.00 0.00 3.36
197 198 0.235144 AGACAAGACACGACGACTCG 59.765 55.000 0.00 0.00 46.06 4.18
198 199 0.234106 GACAAGACACGACGACTCGA 59.766 55.000 5.20 0.00 43.06 4.04
199 200 0.873054 ACAAGACACGACGACTCGAT 59.127 50.000 5.20 0.00 43.06 3.59
200 201 1.251355 CAAGACACGACGACTCGATG 58.749 55.000 5.20 3.27 43.06 3.84
201 202 1.136057 CAAGACACGACGACTCGATGA 60.136 52.381 5.20 0.00 43.06 2.92
202 203 1.370609 AGACACGACGACTCGATGAT 58.629 50.000 5.20 0.00 43.06 2.45
203 204 1.062733 AGACACGACGACTCGATGATG 59.937 52.381 5.20 0.84 43.06 3.07
204 205 0.523546 ACACGACGACTCGATGATGC 60.524 55.000 5.20 0.00 43.06 3.91
205 206 0.248255 CACGACGACTCGATGATGCT 60.248 55.000 5.20 0.00 43.06 3.79
206 207 0.452184 ACGACGACTCGATGATGCTT 59.548 50.000 5.20 0.00 43.06 3.91
207 208 1.135373 ACGACGACTCGATGATGCTTT 60.135 47.619 5.20 0.00 43.06 3.51
208 209 1.920574 CGACGACTCGATGATGCTTTT 59.079 47.619 5.20 0.00 43.06 2.27
209 210 2.284684 CGACGACTCGATGATGCTTTTG 60.285 50.000 5.20 0.00 43.06 2.44
210 211 2.002586 ACGACTCGATGATGCTTTTGG 58.997 47.619 5.20 0.00 0.00 3.28
211 212 2.270923 CGACTCGATGATGCTTTTGGA 58.729 47.619 0.00 0.00 0.00 3.53
212 213 2.283617 CGACTCGATGATGCTTTTGGAG 59.716 50.000 0.00 0.00 0.00 3.86
220 221 4.081050 GCTTTTGGAGCCTTCGGT 57.919 55.556 0.00 0.00 46.01 4.69
221 222 1.581447 GCTTTTGGAGCCTTCGGTG 59.419 57.895 0.00 0.00 46.01 4.94
222 223 1.866853 GCTTTTGGAGCCTTCGGTGG 61.867 60.000 0.00 0.00 46.01 4.61
223 224 0.250727 CTTTTGGAGCCTTCGGTGGA 60.251 55.000 0.00 0.00 0.00 4.02
224 225 0.404040 TTTTGGAGCCTTCGGTGGAT 59.596 50.000 0.00 0.00 0.00 3.41
225 226 0.322456 TTTGGAGCCTTCGGTGGATG 60.322 55.000 0.00 0.00 0.00 3.51
226 227 1.488705 TTGGAGCCTTCGGTGGATGT 61.489 55.000 0.00 0.00 0.00 3.06
227 228 1.299976 GGAGCCTTCGGTGGATGTT 59.700 57.895 0.00 0.00 0.00 2.71
228 229 0.322546 GGAGCCTTCGGTGGATGTTT 60.323 55.000 0.00 0.00 0.00 2.83
229 230 1.087501 GAGCCTTCGGTGGATGTTTC 58.912 55.000 0.00 0.00 0.00 2.78
230 231 0.400213 AGCCTTCGGTGGATGTTTCA 59.600 50.000 0.00 0.00 0.00 2.69
231 232 1.004745 AGCCTTCGGTGGATGTTTCAT 59.995 47.619 0.00 0.00 0.00 2.57
232 233 1.133025 GCCTTCGGTGGATGTTTCATG 59.867 52.381 0.00 0.00 0.00 3.07
233 234 2.436417 CCTTCGGTGGATGTTTCATGT 58.564 47.619 0.00 0.00 0.00 3.21
234 235 2.819608 CCTTCGGTGGATGTTTCATGTT 59.180 45.455 0.00 0.00 0.00 2.71
235 236 4.006989 CCTTCGGTGGATGTTTCATGTTA 58.993 43.478 0.00 0.00 0.00 2.41
236 237 4.094887 CCTTCGGTGGATGTTTCATGTTAG 59.905 45.833 0.00 0.00 0.00 2.34
237 238 4.545208 TCGGTGGATGTTTCATGTTAGA 57.455 40.909 0.00 0.00 0.00 2.10
238 239 5.097742 TCGGTGGATGTTTCATGTTAGAT 57.902 39.130 0.00 0.00 0.00 1.98
239 240 6.228616 TCGGTGGATGTTTCATGTTAGATA 57.771 37.500 0.00 0.00 0.00 1.98
240 241 6.280643 TCGGTGGATGTTTCATGTTAGATAG 58.719 40.000 0.00 0.00 0.00 2.08
241 242 5.466728 CGGTGGATGTTTCATGTTAGATAGG 59.533 44.000 0.00 0.00 0.00 2.57
242 243 6.357367 GGTGGATGTTTCATGTTAGATAGGT 58.643 40.000 0.00 0.00 0.00 3.08
243 244 6.483640 GGTGGATGTTTCATGTTAGATAGGTC 59.516 42.308 0.00 0.00 0.00 3.85
244 245 7.275920 GTGGATGTTTCATGTTAGATAGGTCT 58.724 38.462 0.00 0.00 38.52 3.85
245 246 7.770897 GTGGATGTTTCATGTTAGATAGGTCTT 59.229 37.037 0.00 0.00 35.87 3.01
246 247 7.987458 TGGATGTTTCATGTTAGATAGGTCTTC 59.013 37.037 0.00 0.00 35.87 2.87
247 248 8.207545 GGATGTTTCATGTTAGATAGGTCTTCT 58.792 37.037 0.00 0.00 35.87 2.85
248 249 8.954950 ATGTTTCATGTTAGATAGGTCTTCTG 57.045 34.615 0.00 0.00 35.87 3.02
249 250 6.818644 TGTTTCATGTTAGATAGGTCTTCTGC 59.181 38.462 0.00 0.00 35.87 4.26
250 251 5.188327 TCATGTTAGATAGGTCTTCTGCG 57.812 43.478 0.00 0.00 35.87 5.18
251 252 4.645136 TCATGTTAGATAGGTCTTCTGCGT 59.355 41.667 0.00 0.00 35.87 5.24
252 253 5.127194 TCATGTTAGATAGGTCTTCTGCGTT 59.873 40.000 0.00 0.00 35.87 4.84
253 254 4.744570 TGTTAGATAGGTCTTCTGCGTTG 58.255 43.478 0.00 0.00 35.87 4.10
254 255 2.969628 AGATAGGTCTTCTGCGTTGG 57.030 50.000 0.00 0.00 0.00 3.77
255 256 2.457598 AGATAGGTCTTCTGCGTTGGA 58.542 47.619 0.00 0.00 0.00 3.53
256 257 3.034635 AGATAGGTCTTCTGCGTTGGAT 58.965 45.455 0.00 0.00 0.00 3.41
257 258 2.672961 TAGGTCTTCTGCGTTGGATG 57.327 50.000 0.00 0.00 0.00 3.51
258 259 0.976641 AGGTCTTCTGCGTTGGATGA 59.023 50.000 0.00 0.00 0.00 2.92
259 260 1.556911 AGGTCTTCTGCGTTGGATGAT 59.443 47.619 0.00 0.00 0.00 2.45
260 261 2.026822 AGGTCTTCTGCGTTGGATGATT 60.027 45.455 0.00 0.00 0.00 2.57
261 262 2.749621 GGTCTTCTGCGTTGGATGATTT 59.250 45.455 0.00 0.00 0.00 2.17
262 263 3.426695 GGTCTTCTGCGTTGGATGATTTG 60.427 47.826 0.00 0.00 0.00 2.32
263 264 2.749076 TCTTCTGCGTTGGATGATTTGG 59.251 45.455 0.00 0.00 0.00 3.28
264 265 2.488204 TCTGCGTTGGATGATTTGGA 57.512 45.000 0.00 0.00 0.00 3.53
265 266 3.003394 TCTGCGTTGGATGATTTGGAT 57.997 42.857 0.00 0.00 0.00 3.41
266 267 2.684374 TCTGCGTTGGATGATTTGGATG 59.316 45.455 0.00 0.00 0.00 3.51
267 268 1.750206 TGCGTTGGATGATTTGGATGG 59.250 47.619 0.00 0.00 0.00 3.51
268 269 1.750778 GCGTTGGATGATTTGGATGGT 59.249 47.619 0.00 0.00 0.00 3.55
269 270 2.480073 GCGTTGGATGATTTGGATGGTG 60.480 50.000 0.00 0.00 0.00 4.17
270 271 2.754552 CGTTGGATGATTTGGATGGTGT 59.245 45.455 0.00 0.00 0.00 4.16
271 272 3.944650 CGTTGGATGATTTGGATGGTGTA 59.055 43.478 0.00 0.00 0.00 2.90
272 273 4.397730 CGTTGGATGATTTGGATGGTGTAA 59.602 41.667 0.00 0.00 0.00 2.41
273 274 5.067674 CGTTGGATGATTTGGATGGTGTAAT 59.932 40.000 0.00 0.00 0.00 1.89
274 275 6.275335 GTTGGATGATTTGGATGGTGTAATG 58.725 40.000 0.00 0.00 0.00 1.90
275 276 4.894705 TGGATGATTTGGATGGTGTAATGG 59.105 41.667 0.00 0.00 0.00 3.16
276 277 4.895297 GGATGATTTGGATGGTGTAATGGT 59.105 41.667 0.00 0.00 0.00 3.55
277 278 5.221303 GGATGATTTGGATGGTGTAATGGTG 60.221 44.000 0.00 0.00 0.00 4.17
278 279 3.446873 TGATTTGGATGGTGTAATGGTGC 59.553 43.478 0.00 0.00 0.00 5.01
279 280 1.846007 TTGGATGGTGTAATGGTGCC 58.154 50.000 0.00 0.00 0.00 5.01
280 281 0.998928 TGGATGGTGTAATGGTGCCT 59.001 50.000 0.00 0.00 0.00 4.75
281 282 1.357420 TGGATGGTGTAATGGTGCCTT 59.643 47.619 0.00 0.00 0.00 4.35
282 283 2.024414 GGATGGTGTAATGGTGCCTTC 58.976 52.381 0.00 0.00 0.00 3.46
283 284 1.670811 GATGGTGTAATGGTGCCTTCG 59.329 52.381 0.00 0.00 0.00 3.79
284 285 0.958382 TGGTGTAATGGTGCCTTCGC 60.958 55.000 0.00 0.00 0.00 4.70
285 286 1.423845 GTGTAATGGTGCCTTCGCG 59.576 57.895 0.00 0.00 38.08 5.87
286 287 1.004320 TGTAATGGTGCCTTCGCGT 60.004 52.632 5.77 0.00 38.08 6.01
287 288 1.295357 TGTAATGGTGCCTTCGCGTG 61.295 55.000 5.77 0.00 38.08 5.34
288 289 1.743623 TAATGGTGCCTTCGCGTGG 60.744 57.895 5.77 11.37 38.08 4.94
289 290 2.173758 TAATGGTGCCTTCGCGTGGA 62.174 55.000 21.17 4.36 38.08 4.02
290 291 3.545124 ATGGTGCCTTCGCGTGGAA 62.545 57.895 21.17 10.72 38.08 3.53
291 292 3.723348 GGTGCCTTCGCGTGGAAC 61.723 66.667 21.17 20.07 38.08 3.62
292 293 3.723348 GTGCCTTCGCGTGGAACC 61.723 66.667 21.17 7.36 38.08 3.62
293 294 3.936203 TGCCTTCGCGTGGAACCT 61.936 61.111 21.17 0.00 38.08 3.50
294 295 2.668550 GCCTTCGCGTGGAACCTT 60.669 61.111 21.17 0.00 0.00 3.50
295 296 2.258726 GCCTTCGCGTGGAACCTTT 61.259 57.895 21.17 0.00 0.00 3.11
296 297 1.574428 CCTTCGCGTGGAACCTTTG 59.426 57.895 5.77 0.00 0.00 2.77
297 298 1.164041 CCTTCGCGTGGAACCTTTGT 61.164 55.000 5.77 0.00 0.00 2.83
298 299 0.661020 CTTCGCGTGGAACCTTTGTT 59.339 50.000 5.77 0.00 37.42 2.83
310 311 5.680479 GAACCTTTGTTCTGTTTTTGTCG 57.320 39.130 0.00 0.00 46.03 4.35
311 312 4.776795 ACCTTTGTTCTGTTTTTGTCGT 57.223 36.364 0.00 0.00 0.00 4.34
312 313 4.729595 ACCTTTGTTCTGTTTTTGTCGTC 58.270 39.130 0.00 0.00 0.00 4.20
313 314 4.216687 ACCTTTGTTCTGTTTTTGTCGTCA 59.783 37.500 0.00 0.00 0.00 4.35
314 315 5.105917 ACCTTTGTTCTGTTTTTGTCGTCAT 60.106 36.000 0.00 0.00 0.00 3.06
315 316 5.455525 CCTTTGTTCTGTTTTTGTCGTCATC 59.544 40.000 0.00 0.00 0.00 2.92
316 317 5.811399 TTGTTCTGTTTTTGTCGTCATCT 57.189 34.783 0.00 0.00 0.00 2.90
317 318 5.811399 TGTTCTGTTTTTGTCGTCATCTT 57.189 34.783 0.00 0.00 0.00 2.40
318 319 5.568482 TGTTCTGTTTTTGTCGTCATCTTG 58.432 37.500 0.00 0.00 0.00 3.02
319 320 4.811555 TCTGTTTTTGTCGTCATCTTGG 57.188 40.909 0.00 0.00 0.00 3.61
320 321 4.447290 TCTGTTTTTGTCGTCATCTTGGA 58.553 39.130 0.00 0.00 0.00 3.53
321 322 4.272504 TCTGTTTTTGTCGTCATCTTGGAC 59.727 41.667 0.00 0.00 34.42 4.02
322 323 4.196193 TGTTTTTGTCGTCATCTTGGACT 58.804 39.130 0.00 0.00 35.63 3.85
323 324 4.035091 TGTTTTTGTCGTCATCTTGGACTG 59.965 41.667 0.00 0.00 35.63 3.51
324 325 3.744238 TTTGTCGTCATCTTGGACTGA 57.256 42.857 0.00 0.00 35.63 3.41
325 326 3.744238 TTGTCGTCATCTTGGACTGAA 57.256 42.857 0.00 0.00 35.63 3.02
326 327 3.026630 TGTCGTCATCTTGGACTGAAC 57.973 47.619 0.00 0.00 35.63 3.18
327 328 2.628178 TGTCGTCATCTTGGACTGAACT 59.372 45.455 0.00 0.00 35.63 3.01
328 329 3.069586 TGTCGTCATCTTGGACTGAACTT 59.930 43.478 0.00 0.00 35.63 2.66
329 330 3.430218 GTCGTCATCTTGGACTGAACTTG 59.570 47.826 0.00 0.00 35.63 3.16
330 331 3.069586 TCGTCATCTTGGACTGAACTTGT 59.930 43.478 0.00 0.00 35.63 3.16
331 332 3.809832 CGTCATCTTGGACTGAACTTGTT 59.190 43.478 0.00 0.00 35.63 2.83
332 333 4.273480 CGTCATCTTGGACTGAACTTGTTT 59.727 41.667 0.00 0.00 35.63 2.83
333 334 5.514279 GTCATCTTGGACTGAACTTGTTTG 58.486 41.667 0.00 0.00 34.92 2.93
334 335 4.036734 TCATCTTGGACTGAACTTGTTTGC 59.963 41.667 0.00 0.00 0.00 3.68
335 336 3.620488 TCTTGGACTGAACTTGTTTGCT 58.380 40.909 0.00 0.00 0.00 3.91
336 337 3.378112 TCTTGGACTGAACTTGTTTGCTG 59.622 43.478 0.00 0.00 0.00 4.41
337 338 1.405105 TGGACTGAACTTGTTTGCTGC 59.595 47.619 0.00 0.00 0.00 5.25
338 339 1.678101 GGACTGAACTTGTTTGCTGCT 59.322 47.619 0.00 0.00 0.00 4.24
339 340 2.099756 GGACTGAACTTGTTTGCTGCTT 59.900 45.455 0.00 0.00 0.00 3.91
340 341 3.429410 GGACTGAACTTGTTTGCTGCTTT 60.429 43.478 0.00 0.00 0.00 3.51
341 342 4.176271 GACTGAACTTGTTTGCTGCTTTT 58.824 39.130 0.00 0.00 0.00 2.27
342 343 4.176271 ACTGAACTTGTTTGCTGCTTTTC 58.824 39.130 0.00 0.00 0.00 2.29
343 344 3.520569 TGAACTTGTTTGCTGCTTTTCC 58.479 40.909 0.00 0.00 0.00 3.13
344 345 2.208326 ACTTGTTTGCTGCTTTTCCG 57.792 45.000 0.00 0.00 0.00 4.30
345 346 1.202405 ACTTGTTTGCTGCTTTTCCGG 60.202 47.619 0.00 0.00 0.00 5.14
346 347 0.103937 TTGTTTGCTGCTTTTCCGGG 59.896 50.000 0.00 0.00 0.00 5.73
347 348 1.040339 TGTTTGCTGCTTTTCCGGGT 61.040 50.000 0.00 0.00 0.00 5.28
348 349 0.104120 GTTTGCTGCTTTTCCGGGTT 59.896 50.000 0.00 0.00 0.00 4.11
349 350 1.338655 GTTTGCTGCTTTTCCGGGTTA 59.661 47.619 0.00 0.00 0.00 2.85
350 351 1.917872 TTGCTGCTTTTCCGGGTTAT 58.082 45.000 0.00 0.00 0.00 1.89
351 352 2.791347 TGCTGCTTTTCCGGGTTATA 57.209 45.000 0.00 0.00 0.00 0.98
352 353 3.290948 TGCTGCTTTTCCGGGTTATAT 57.709 42.857 0.00 0.00 0.00 0.86
353 354 3.211045 TGCTGCTTTTCCGGGTTATATC 58.789 45.455 0.00 0.00 0.00 1.63
354 355 3.118038 TGCTGCTTTTCCGGGTTATATCT 60.118 43.478 0.00 0.00 0.00 1.98
355 356 3.883489 GCTGCTTTTCCGGGTTATATCTT 59.117 43.478 0.00 0.00 0.00 2.40
356 357 5.061179 GCTGCTTTTCCGGGTTATATCTTA 58.939 41.667 0.00 0.00 0.00 2.10
357 358 5.049612 GCTGCTTTTCCGGGTTATATCTTAC 60.050 44.000 0.00 0.00 0.00 2.34
358 359 6.243216 TGCTTTTCCGGGTTATATCTTACT 57.757 37.500 0.00 0.00 0.00 2.24
359 360 7.364149 TGCTTTTCCGGGTTATATCTTACTA 57.636 36.000 0.00 0.00 0.00 1.82
360 361 7.794041 TGCTTTTCCGGGTTATATCTTACTAA 58.206 34.615 0.00 0.00 0.00 2.24
361 362 8.266473 TGCTTTTCCGGGTTATATCTTACTAAA 58.734 33.333 0.00 0.00 0.00 1.85
362 363 8.554528 GCTTTTCCGGGTTATATCTTACTAAAC 58.445 37.037 0.00 0.00 0.00 2.01
363 364 9.828039 CTTTTCCGGGTTATATCTTACTAAACT 57.172 33.333 0.00 0.00 0.00 2.66
364 365 9.603921 TTTTCCGGGTTATATCTTACTAAACTG 57.396 33.333 0.00 0.00 0.00 3.16
365 366 7.294017 TCCGGGTTATATCTTACTAAACTGG 57.706 40.000 0.00 0.00 40.85 4.00
366 367 6.840705 TCCGGGTTATATCTTACTAAACTGGT 59.159 38.462 0.00 0.00 40.51 4.00
367 368 6.927381 CCGGGTTATATCTTACTAAACTGGTG 59.073 42.308 0.00 0.00 36.64 4.17
368 369 6.423001 CGGGTTATATCTTACTAAACTGGTGC 59.577 42.308 0.00 0.00 0.00 5.01
369 370 6.709397 GGGTTATATCTTACTAAACTGGTGCC 59.291 42.308 0.00 0.00 0.00 5.01
370 371 7.419865 GGGTTATATCTTACTAAACTGGTGCCT 60.420 40.741 0.00 0.00 0.00 4.75
371 372 7.441458 GGTTATATCTTACTAAACTGGTGCCTG 59.559 40.741 0.00 0.00 0.00 4.85
372 373 6.808321 ATATCTTACTAAACTGGTGCCTGA 57.192 37.500 2.07 0.00 0.00 3.86
373 374 4.537135 TCTTACTAAACTGGTGCCTGAG 57.463 45.455 2.07 0.00 0.00 3.35
374 375 3.260884 TCTTACTAAACTGGTGCCTGAGG 59.739 47.826 0.00 0.00 0.00 3.86
375 376 0.693049 ACTAAACTGGTGCCTGAGGG 59.307 55.000 0.00 0.00 0.00 4.30
399 400 6.727569 CTTTATTAATTTAAAGCCGGACGC 57.272 37.500 5.05 0.00 33.69 5.19
400 401 2.810028 TTAATTTAAAGCCGGACGCG 57.190 45.000 5.05 3.53 44.76 6.01
401 402 1.724429 TAATTTAAAGCCGGACGCGT 58.276 45.000 13.85 13.85 44.76 6.01
402 403 0.445043 AATTTAAAGCCGGACGCGTC 59.555 50.000 30.67 30.67 44.76 5.19
403 404 0.390735 ATTTAAAGCCGGACGCGTCT 60.391 50.000 35.50 19.23 44.76 4.18
404 405 0.243365 TTTAAAGCCGGACGCGTCTA 59.757 50.000 35.50 18.18 44.76 2.59
405 406 0.179156 TTAAAGCCGGACGCGTCTAG 60.179 55.000 35.50 28.02 44.76 2.43
406 407 2.603135 TAAAGCCGGACGCGTCTAGC 62.603 60.000 35.50 33.78 44.76 3.42
415 416 4.454554 GCGTCTAGCGTCTTCGTT 57.545 55.556 8.08 0.00 43.66 3.85
416 417 2.267301 GCGTCTAGCGTCTTCGTTC 58.733 57.895 8.08 0.00 43.66 3.95
417 418 1.132780 GCGTCTAGCGTCTTCGTTCC 61.133 60.000 8.08 0.00 43.66 3.62
418 419 0.167470 CGTCTAGCGTCTTCGTTCCA 59.833 55.000 0.00 0.00 39.49 3.53
419 420 1.400629 CGTCTAGCGTCTTCGTTCCAA 60.401 52.381 0.00 0.00 39.49 3.53
420 421 2.669364 GTCTAGCGTCTTCGTTCCAAA 58.331 47.619 0.00 0.00 39.49 3.28
421 422 3.054878 GTCTAGCGTCTTCGTTCCAAAA 58.945 45.455 0.00 0.00 39.49 2.44
422 423 3.492011 GTCTAGCGTCTTCGTTCCAAAAA 59.508 43.478 0.00 0.00 39.49 1.94
442 443 4.326504 AAAAACTGTGCAATGAAGGAGG 57.673 40.909 0.00 0.00 0.00 4.30
443 444 2.957402 AACTGTGCAATGAAGGAGGA 57.043 45.000 0.00 0.00 0.00 3.71
444 445 2.486472 ACTGTGCAATGAAGGAGGAG 57.514 50.000 0.00 0.00 0.00 3.69
445 446 1.004044 ACTGTGCAATGAAGGAGGAGG 59.996 52.381 0.00 0.00 0.00 4.30
446 447 0.322816 TGTGCAATGAAGGAGGAGGC 60.323 55.000 0.00 0.00 0.00 4.70
447 448 1.078214 TGCAATGAAGGAGGAGGCG 60.078 57.895 0.00 0.00 0.00 5.52
448 449 2.476320 GCAATGAAGGAGGAGGCGC 61.476 63.158 0.00 0.00 0.00 6.53
449 450 1.222936 CAATGAAGGAGGAGGCGCT 59.777 57.895 7.64 0.00 0.00 5.92
450 451 0.813210 CAATGAAGGAGGAGGCGCTC 60.813 60.000 7.64 2.45 0.00 5.03
451 452 2.303549 AATGAAGGAGGAGGCGCTCG 62.304 60.000 7.64 0.00 0.00 5.03
452 453 4.882396 GAAGGAGGAGGCGCTCGC 62.882 72.222 7.64 5.60 41.06 5.03
469 470 3.964875 CCGCCTGGCACACAACAC 61.965 66.667 20.29 0.00 0.00 3.32
470 471 4.312231 CGCCTGGCACACAACACG 62.312 66.667 20.29 0.00 0.00 4.49
471 472 2.899838 GCCTGGCACACAACACGA 60.900 61.111 15.17 0.00 0.00 4.35
472 473 2.896801 GCCTGGCACACAACACGAG 61.897 63.158 15.17 0.00 0.00 4.18
473 474 2.633657 CTGGCACACAACACGAGC 59.366 61.111 0.00 0.00 0.00 5.03
474 475 2.896801 CTGGCACACAACACGAGCC 61.897 63.158 0.00 0.00 45.41 4.70
475 476 2.899838 GGCACACAACACGAGCCA 60.900 61.111 0.00 0.00 44.59 4.75
476 477 2.477176 GGCACACAACACGAGCCAA 61.477 57.895 0.00 0.00 44.59 4.52
477 478 1.009675 GCACACAACACGAGCCAAG 60.010 57.895 0.00 0.00 0.00 3.61
478 479 1.648720 CACACAACACGAGCCAAGG 59.351 57.895 0.00 0.00 0.00 3.61
479 480 1.525995 ACACAACACGAGCCAAGGG 60.526 57.895 0.00 0.00 0.00 3.95
497 498 3.659092 CGCGAGTTGCAAAGCCCA 61.659 61.111 0.00 0.00 46.97 5.36
534 535 0.460987 CCGCCTAGCAGAAGAAGGTG 60.461 60.000 0.00 0.00 40.00 4.00
538 539 2.236395 GCCTAGCAGAAGAAGGTGGTTA 59.764 50.000 0.00 0.00 32.67 2.85
539 540 3.680196 GCCTAGCAGAAGAAGGTGGTTAG 60.680 52.174 0.00 0.00 32.67 2.34
540 541 3.118592 CCTAGCAGAAGAAGGTGGTTAGG 60.119 52.174 0.00 0.00 0.00 2.69
543 544 3.589288 AGCAGAAGAAGGTGGTTAGGATT 59.411 43.478 0.00 0.00 0.00 3.01
548 549 4.762289 AGAAGGTGGTTAGGATTAGCAG 57.238 45.455 0.00 0.00 0.00 4.24
560 561 1.553690 ATTAGCAGCGGTGACACCCT 61.554 55.000 20.69 13.60 33.75 4.34
564 565 3.560251 AGCGGTGACACCCTGCTT 61.560 61.111 19.11 5.11 33.75 3.91
570 571 1.279271 GGTGACACCCTGCTTCTATGT 59.721 52.381 14.16 0.00 30.04 2.29
586 587 4.442706 TCTATGTCAAAGAGGAAATCGCC 58.557 43.478 0.00 0.00 0.00 5.54
587 588 1.438651 TGTCAAAGAGGAAATCGCCG 58.561 50.000 0.00 0.00 0.00 6.46
588 589 1.001520 TGTCAAAGAGGAAATCGCCGA 59.998 47.619 0.00 0.00 0.00 5.54
589 590 1.393883 GTCAAAGAGGAAATCGCCGAC 59.606 52.381 0.00 0.00 0.00 4.79
590 591 0.370273 CAAAGAGGAAATCGCCGACG 59.630 55.000 0.00 0.00 42.01 5.12
591 592 1.359459 AAAGAGGAAATCGCCGACGC 61.359 55.000 0.00 0.00 39.84 5.19
592 593 2.202756 GAGGAAATCGCCGACGCT 60.203 61.111 0.00 0.00 39.84 5.07
593 594 2.202756 AGGAAATCGCCGACGCTC 60.203 61.111 0.00 0.00 39.84 5.03
594 595 3.262686 GGAAATCGCCGACGCTCC 61.263 66.667 0.00 0.00 39.84 4.70
595 596 2.508439 GAAATCGCCGACGCTCCA 60.508 61.111 0.00 0.00 39.84 3.86
596 597 2.047655 AAATCGCCGACGCTCCAA 60.048 55.556 0.00 0.00 39.84 3.53
597 598 2.292802 GAAATCGCCGACGCTCCAAC 62.293 60.000 0.00 0.00 39.84 3.77
598 599 4.814294 ATCGCCGACGCTCCAACC 62.814 66.667 0.00 0.00 39.84 3.77
602 603 4.796231 CCGACGCTCCAACCCGAG 62.796 72.222 0.00 0.00 0.00 4.63
635 636 2.954753 GCTTCAGCCAACACCGACG 61.955 63.158 0.00 0.00 34.31 5.12
656 657 3.023949 GCCGGCTCTGATGTGTCCT 62.024 63.158 22.15 0.00 0.00 3.85
657 658 1.142748 CCGGCTCTGATGTGTCCTC 59.857 63.158 0.00 0.00 0.00 3.71
662 663 1.203523 GCTCTGATGTGTCCTCGAAGT 59.796 52.381 0.00 0.00 0.00 3.01
698 699 9.458727 CCATGGCTAGAACTATGATGATTTATT 57.541 33.333 0.00 0.00 0.00 1.40
759 918 6.821031 AATGCAATGGTGTATTTGCATTTT 57.179 29.167 23.02 9.44 43.20 1.82
805 964 7.039223 TCGTTTGAGATTTACCCTTAGAAGACT 60.039 37.037 0.00 0.00 0.00 3.24
815 974 3.306088 CCCTTAGAAGACTTGCAGACGAA 60.306 47.826 0.00 0.00 0.00 3.85
849 1008 2.995872 GCGGCGAGTCTTCCAGAGT 61.996 63.158 12.98 0.00 0.00 3.24
879 1038 1.036707 CTCCATCTCCTTCCTCCGTC 58.963 60.000 0.00 0.00 0.00 4.79
880 1039 0.397254 TCCATCTCCTTCCTCCGTCC 60.397 60.000 0.00 0.00 0.00 4.79
881 1040 1.736586 CATCTCCTTCCTCCGTCCG 59.263 63.158 0.00 0.00 0.00 4.79
882 1041 1.455959 ATCTCCTTCCTCCGTCCGG 60.456 63.158 0.00 0.00 0.00 5.14
933 1096 2.124277 AAACCCTCGCCCAAATCTAC 57.876 50.000 0.00 0.00 0.00 2.59
1110 1284 0.907704 ACTCCCGCACCAAGGACATA 60.908 55.000 0.00 0.00 0.00 2.29
1769 3155 1.061485 GAGACGTTCAAGGAAGACGC 58.939 55.000 0.00 0.00 0.00 5.19
1967 3362 0.620556 GCTCCACCAAATCTGAGGGA 59.379 55.000 0.49 0.00 0.00 4.20
2057 3458 3.557264 GCTATGTCCCCTACACATTAGCC 60.557 52.174 0.00 0.00 42.09 3.93
2058 3459 1.959710 TGTCCCCTACACATTAGCCA 58.040 50.000 0.00 0.00 31.43 4.75
2115 3516 5.713025 CAATGGTGAAACATGGTTTCTAGG 58.287 41.667 19.12 3.89 39.98 3.02
2118 3519 3.440522 GGTGAAACATGGTTTCTAGGCTC 59.559 47.826 19.12 6.40 39.98 4.70
2124 3525 4.770795 ACATGGTTTCTAGGCTCATGTAC 58.229 43.478 13.65 0.00 44.22 2.90
2153 3554 2.361438 GGTACCTCTCTTGGTGTATCCG 59.639 54.545 4.06 0.00 41.05 4.18
2155 3556 1.825474 ACCTCTCTTGGTGTATCCGTG 59.175 52.381 0.00 0.00 39.17 4.94
2156 3557 1.137086 CCTCTCTTGGTGTATCCGTGG 59.863 57.143 0.00 0.00 39.52 4.94
2157 3558 0.535335 TCTCTTGGTGTATCCGTGGC 59.465 55.000 0.00 0.00 39.52 5.01
2158 3559 0.537188 CTCTTGGTGTATCCGTGGCT 59.463 55.000 0.00 0.00 39.52 4.75
2160 3561 0.537188 CTTGGTGTATCCGTGGCTCT 59.463 55.000 0.00 0.00 39.52 4.09
2161 3562 1.754803 CTTGGTGTATCCGTGGCTCTA 59.245 52.381 0.00 0.00 39.52 2.43
2252 3664 3.629142 ACTGTGCCTATTAACCAGGAC 57.371 47.619 8.79 5.35 34.91 3.85
2687 5538 0.466922 GGAACAGGGGCATCATGGAG 60.467 60.000 0.00 0.00 0.00 3.86
2718 6479 2.791383 TCATGAAAACCAGTTTGCCG 57.209 45.000 0.00 0.00 32.36 5.69
2846 6625 1.889545 GGATGCTATCCCAGTTCAGC 58.110 55.000 4.36 0.00 43.88 4.26
2966 6745 7.986085 TTCCTATCTTATATTGAAAGCAGGC 57.014 36.000 0.00 0.00 31.25 4.85
2967 6746 7.078249 TCCTATCTTATATTGAAAGCAGGCA 57.922 36.000 0.00 0.00 31.25 4.75
2969 6748 7.663081 TCCTATCTTATATTGAAAGCAGGCAAG 59.337 37.037 0.00 0.00 31.25 4.01
2970 6749 7.446625 CCTATCTTATATTGAAAGCAGGCAAGT 59.553 37.037 0.00 0.00 0.00 3.16
2971 6750 6.441093 TCTTATATTGAAAGCAGGCAAGTG 57.559 37.500 0.00 0.00 0.00 3.16
2972 6751 3.515330 ATATTGAAAGCAGGCAAGTGC 57.485 42.857 0.00 0.00 44.35 4.40
2978 6757 4.883026 GCAGGCAAGTGCTCATTG 57.117 55.556 2.85 0.00 40.54 2.82
2979 6758 1.214589 GCAGGCAAGTGCTCATTGG 59.785 57.895 2.85 0.00 40.54 3.16
2984 6766 2.821969 AGGCAAGTGCTCATTGGTAAAG 59.178 45.455 2.85 0.00 41.70 1.85
2988 6770 5.288804 GCAAGTGCTCATTGGTAAAGAAAA 58.711 37.500 0.00 0.00 38.21 2.29
3021 6803 5.297278 TGTGTTTTGTGTTGGTGATAGGTAC 59.703 40.000 0.00 0.00 0.00 3.34
3022 6804 5.529800 GTGTTTTGTGTTGGTGATAGGTACT 59.470 40.000 0.00 0.00 46.37 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.003478 CGCGTCGTCCAAATAGCC 58.997 61.111 0.00 0.00 0.00 3.93
1 2 1.962092 TTGCGCGTCGTCCAAATAGC 61.962 55.000 8.43 0.00 0.00 2.97
2 3 0.650512 ATTGCGCGTCGTCCAAATAG 59.349 50.000 8.43 0.00 0.00 1.73
3 4 1.923899 TATTGCGCGTCGTCCAAATA 58.076 45.000 8.43 0.00 0.00 1.40
4 5 1.080298 TTATTGCGCGTCGTCCAAAT 58.920 45.000 8.43 0.00 0.00 2.32
5 6 0.866427 TTTATTGCGCGTCGTCCAAA 59.134 45.000 8.43 0.00 0.00 3.28
6 7 0.866427 TTTTATTGCGCGTCGTCCAA 59.134 45.000 8.43 2.82 0.00 3.53
7 8 1.080298 ATTTTATTGCGCGTCGTCCA 58.920 45.000 8.43 0.00 0.00 4.02
8 9 2.168201 AATTTTATTGCGCGTCGTCC 57.832 45.000 8.43 0.00 0.00 4.79
9 10 2.700567 CGTAATTTTATTGCGCGTCGTC 59.299 45.455 8.43 0.00 0.00 4.20
10 11 2.345041 TCGTAATTTTATTGCGCGTCGT 59.655 40.909 8.43 0.00 0.00 4.34
11 12 2.946357 TCGTAATTTTATTGCGCGTCG 58.054 42.857 8.43 0.00 0.00 5.12
12 13 4.959159 TCAATCGTAATTTTATTGCGCGTC 59.041 37.500 8.43 0.00 31.98 5.19
13 14 4.899516 TCAATCGTAATTTTATTGCGCGT 58.100 34.783 8.43 0.00 31.98 6.01
14 15 5.194657 TCTCAATCGTAATTTTATTGCGCG 58.805 37.500 0.00 0.00 31.98 6.86
15 16 7.431215 TTTCTCAATCGTAATTTTATTGCGC 57.569 32.000 0.00 0.00 31.98 6.09
38 39 3.006430 CGCAGGGTGGTTAGGAAATTTTT 59.994 43.478 0.00 0.00 0.00 1.94
39 40 2.560981 CGCAGGGTGGTTAGGAAATTTT 59.439 45.455 0.00 0.00 0.00 1.82
40 41 2.167662 CGCAGGGTGGTTAGGAAATTT 58.832 47.619 0.00 0.00 0.00 1.82
41 42 1.834188 CGCAGGGTGGTTAGGAAATT 58.166 50.000 0.00 0.00 0.00 1.82
42 43 3.569873 CGCAGGGTGGTTAGGAAAT 57.430 52.632 0.00 0.00 0.00 2.17
43 44 2.460270 ATCCGCAGGGTGGTTAGGAAA 61.460 52.381 0.00 0.00 44.06 3.13
44 45 0.912487 ATCCGCAGGGTGGTTAGGAA 60.912 55.000 0.00 0.00 44.06 3.36
45 46 1.306654 ATCCGCAGGGTGGTTAGGA 60.307 57.895 0.00 0.00 44.06 2.94
46 47 3.320359 ATCCGCAGGGTGGTTAGG 58.680 61.111 0.00 0.00 44.06 2.69
56 57 3.376234 ACATTTGAAGATCACATCCGCAG 59.624 43.478 0.00 0.00 0.00 5.18
57 58 3.346315 ACATTTGAAGATCACATCCGCA 58.654 40.909 0.00 0.00 0.00 5.69
58 59 3.374988 TGACATTTGAAGATCACATCCGC 59.625 43.478 0.00 0.00 0.00 5.54
59 60 4.201851 GGTGACATTTGAAGATCACATCCG 60.202 45.833 5.66 0.00 42.66 4.18
60 61 4.946157 AGGTGACATTTGAAGATCACATCC 59.054 41.667 5.66 0.00 42.66 3.51
61 62 6.506500 AAGGTGACATTTGAAGATCACATC 57.493 37.500 5.66 0.00 42.66 3.06
62 63 6.906157 AAAGGTGACATTTGAAGATCACAT 57.094 33.333 0.00 0.00 42.66 3.21
63 64 6.547141 AGAAAAGGTGACATTTGAAGATCACA 59.453 34.615 0.00 0.00 42.66 3.58
64 65 6.974965 AGAAAAGGTGACATTTGAAGATCAC 58.025 36.000 0.00 0.00 40.62 3.06
65 66 7.587037 AAGAAAAGGTGACATTTGAAGATCA 57.413 32.000 0.00 0.00 30.12 2.92
66 67 8.567948 TGTAAGAAAAGGTGACATTTGAAGATC 58.432 33.333 0.00 0.00 30.12 2.75
67 68 8.463930 TGTAAGAAAAGGTGACATTTGAAGAT 57.536 30.769 0.00 0.00 30.12 2.40
68 69 7.773224 TCTGTAAGAAAAGGTGACATTTGAAGA 59.227 33.333 0.00 0.00 42.31 2.87
69 70 7.930217 TCTGTAAGAAAAGGTGACATTTGAAG 58.070 34.615 0.00 0.00 42.31 3.02
70 71 7.873719 TCTGTAAGAAAAGGTGACATTTGAA 57.126 32.000 0.00 0.00 42.31 2.69
86 87 1.162698 CGGAGTCCACGTCTGTAAGA 58.837 55.000 10.49 0.00 43.69 2.10
87 88 0.456312 GCGGAGTCCACGTCTGTAAG 60.456 60.000 10.49 0.00 0.00 2.34
88 89 0.892358 AGCGGAGTCCACGTCTGTAA 60.892 55.000 10.49 0.00 0.00 2.41
89 90 1.303074 AGCGGAGTCCACGTCTGTA 60.303 57.895 10.49 0.00 0.00 2.74
90 91 2.597805 AGCGGAGTCCACGTCTGT 60.598 61.111 10.49 0.00 0.00 3.41
91 92 2.126307 CAGCGGAGTCCACGTCTG 60.126 66.667 10.49 6.66 32.49 3.51
92 93 3.374402 CCAGCGGAGTCCACGTCT 61.374 66.667 10.49 0.00 0.00 4.18
93 94 4.436998 CCCAGCGGAGTCCACGTC 62.437 72.222 10.49 0.00 0.00 4.34
96 97 3.316573 CTTCCCCAGCGGAGTCCAC 62.317 68.421 10.49 0.00 43.39 4.02
97 98 3.003173 CTTCCCCAGCGGAGTCCA 61.003 66.667 10.49 0.00 43.39 4.02
98 99 3.787001 CCTTCCCCAGCGGAGTCC 61.787 72.222 0.00 0.00 43.39 3.85
99 100 2.683933 TCCTTCCCCAGCGGAGTC 60.684 66.667 0.00 0.00 43.39 3.36
100 101 2.685380 CTCCTTCCCCAGCGGAGT 60.685 66.667 0.00 0.00 43.39 3.85
101 102 4.168291 GCTCCTTCCCCAGCGGAG 62.168 72.222 0.00 0.00 43.39 4.63
106 107 3.854669 ATCGCGCTCCTTCCCCAG 61.855 66.667 5.56 0.00 0.00 4.45
107 108 4.161295 CATCGCGCTCCTTCCCCA 62.161 66.667 5.56 0.00 0.00 4.96
125 126 2.584418 CCTCCGACATGCGCTCAG 60.584 66.667 9.73 0.08 39.11 3.35
126 127 4.819761 GCCTCCGACATGCGCTCA 62.820 66.667 9.73 0.00 39.11 4.26
130 131 3.274586 CATGGCCTCCGACATGCG 61.275 66.667 3.32 0.00 38.15 4.73
131 132 2.903855 CCATGGCCTCCGACATGC 60.904 66.667 3.32 0.00 42.31 4.06
132 133 2.903855 GCCATGGCCTCCGACATG 60.904 66.667 27.24 0.00 43.07 3.21
133 134 4.552365 CGCCATGGCCTCCGACAT 62.552 66.667 30.79 0.00 37.98 3.06
142 143 4.918129 CTTGATGCGCGCCATGGC 62.918 66.667 30.77 27.67 33.29 4.40
143 144 3.204119 TCTTGATGCGCGCCATGG 61.204 61.111 30.77 7.63 33.29 3.66
144 145 1.153597 TAGTCTTGATGCGCGCCATG 61.154 55.000 30.77 20.97 33.29 3.66
145 146 0.250038 ATAGTCTTGATGCGCGCCAT 60.250 50.000 30.77 21.55 36.70 4.40
146 147 0.875908 GATAGTCTTGATGCGCGCCA 60.876 55.000 30.77 18.04 0.00 5.69
147 148 1.560860 GGATAGTCTTGATGCGCGCC 61.561 60.000 30.77 15.18 0.00 6.53
148 149 0.875908 TGGATAGTCTTGATGCGCGC 60.876 55.000 27.26 27.26 0.00 6.86
149 150 1.135046 CTGGATAGTCTTGATGCGCG 58.865 55.000 0.00 0.00 0.00 6.86
150 151 1.202580 ACCTGGATAGTCTTGATGCGC 60.203 52.381 0.00 0.00 0.00 6.09
151 152 2.101415 TCACCTGGATAGTCTTGATGCG 59.899 50.000 0.00 0.00 0.00 4.73
152 153 3.827008 TCACCTGGATAGTCTTGATGC 57.173 47.619 0.00 0.00 0.00 3.91
166 167 2.234661 TGTCTTGTCTAGCCATCACCTG 59.765 50.000 0.00 0.00 0.00 4.00
167 168 2.234908 GTGTCTTGTCTAGCCATCACCT 59.765 50.000 0.00 0.00 0.00 4.00
168 169 2.622436 GTGTCTTGTCTAGCCATCACC 58.378 52.381 0.00 0.00 0.00 4.02
169 170 2.094700 TCGTGTCTTGTCTAGCCATCAC 60.095 50.000 0.00 0.00 0.00 3.06
170 171 2.094700 GTCGTGTCTTGTCTAGCCATCA 60.095 50.000 0.00 0.00 0.00 3.07
171 172 2.531206 GTCGTGTCTTGTCTAGCCATC 58.469 52.381 0.00 0.00 0.00 3.51
172 173 1.135373 CGTCGTGTCTTGTCTAGCCAT 60.135 52.381 0.00 0.00 0.00 4.40
173 174 0.240145 CGTCGTGTCTTGTCTAGCCA 59.760 55.000 0.00 0.00 0.00 4.75
174 175 0.520404 TCGTCGTGTCTTGTCTAGCC 59.480 55.000 0.00 0.00 0.00 3.93
175 176 1.197264 AGTCGTCGTGTCTTGTCTAGC 59.803 52.381 0.00 0.00 0.00 3.42
176 177 2.472560 CGAGTCGTCGTGTCTTGTCTAG 60.473 54.545 3.82 0.00 41.57 2.43
177 178 1.458445 CGAGTCGTCGTGTCTTGTCTA 59.542 52.381 3.82 0.00 41.57 2.59
178 179 0.235144 CGAGTCGTCGTGTCTTGTCT 59.765 55.000 3.82 0.00 41.57 3.41
179 180 0.234106 TCGAGTCGTCGTGTCTTGTC 59.766 55.000 13.12 0.00 46.85 3.18
180 181 0.873054 ATCGAGTCGTCGTGTCTTGT 59.127 50.000 13.12 0.00 46.85 3.16
181 182 1.136057 TCATCGAGTCGTCGTGTCTTG 60.136 52.381 13.12 0.00 46.85 3.02
182 183 1.154197 TCATCGAGTCGTCGTGTCTT 58.846 50.000 13.12 0.00 46.85 3.01
183 184 1.062733 CATCATCGAGTCGTCGTGTCT 59.937 52.381 13.12 1.09 46.85 3.41
184 185 1.457738 CATCATCGAGTCGTCGTGTC 58.542 55.000 13.12 0.00 46.85 3.67
185 186 0.523546 GCATCATCGAGTCGTCGTGT 60.524 55.000 13.12 0.00 46.85 4.49
186 187 0.248255 AGCATCATCGAGTCGTCGTG 60.248 55.000 13.12 10.25 46.85 4.35
187 188 0.452184 AAGCATCATCGAGTCGTCGT 59.548 50.000 13.12 0.00 46.85 4.34
189 190 2.029728 CCAAAAGCATCATCGAGTCGTC 59.970 50.000 13.12 0.00 0.00 4.20
190 191 2.002586 CCAAAAGCATCATCGAGTCGT 58.997 47.619 13.12 0.00 0.00 4.34
191 192 2.270923 TCCAAAAGCATCATCGAGTCG 58.729 47.619 6.09 6.09 0.00 4.18
192 193 3.940657 CTCCAAAAGCATCATCGAGTC 57.059 47.619 0.00 0.00 0.00 3.36
214 215 4.935205 TCTAACATGAAACATCCACCGAAG 59.065 41.667 0.00 0.00 0.00 3.79
215 216 4.900684 TCTAACATGAAACATCCACCGAA 58.099 39.130 0.00 0.00 0.00 4.30
216 217 4.545208 TCTAACATGAAACATCCACCGA 57.455 40.909 0.00 0.00 0.00 4.69
217 218 5.466728 CCTATCTAACATGAAACATCCACCG 59.533 44.000 0.00 0.00 0.00 4.94
218 219 6.357367 ACCTATCTAACATGAAACATCCACC 58.643 40.000 0.00 0.00 0.00 4.61
219 220 7.275920 AGACCTATCTAACATGAAACATCCAC 58.724 38.462 0.00 0.00 31.46 4.02
220 221 7.437713 AGACCTATCTAACATGAAACATCCA 57.562 36.000 0.00 0.00 31.46 3.41
221 222 8.207545 AGAAGACCTATCTAACATGAAACATCC 58.792 37.037 0.00 0.00 33.57 3.51
222 223 9.039870 CAGAAGACCTATCTAACATGAAACATC 57.960 37.037 0.00 0.00 33.57 3.06
223 224 7.497249 GCAGAAGACCTATCTAACATGAAACAT 59.503 37.037 0.00 0.00 33.57 2.71
224 225 6.818644 GCAGAAGACCTATCTAACATGAAACA 59.181 38.462 0.00 0.00 33.57 2.83
225 226 6.019479 CGCAGAAGACCTATCTAACATGAAAC 60.019 42.308 0.00 0.00 33.57 2.78
226 227 6.042777 CGCAGAAGACCTATCTAACATGAAA 58.957 40.000 0.00 0.00 33.57 2.69
227 228 5.127194 ACGCAGAAGACCTATCTAACATGAA 59.873 40.000 0.00 0.00 33.57 2.57
228 229 4.645136 ACGCAGAAGACCTATCTAACATGA 59.355 41.667 0.00 0.00 33.57 3.07
229 230 4.938080 ACGCAGAAGACCTATCTAACATG 58.062 43.478 0.00 0.00 33.57 3.21
230 231 5.352284 CAACGCAGAAGACCTATCTAACAT 58.648 41.667 0.00 0.00 33.57 2.71
231 232 4.381612 CCAACGCAGAAGACCTATCTAACA 60.382 45.833 0.00 0.00 33.57 2.41
232 233 4.113354 CCAACGCAGAAGACCTATCTAAC 58.887 47.826 0.00 0.00 33.57 2.34
233 234 4.021229 TCCAACGCAGAAGACCTATCTAA 58.979 43.478 0.00 0.00 33.57 2.10
234 235 3.628008 TCCAACGCAGAAGACCTATCTA 58.372 45.455 0.00 0.00 33.57 1.98
235 236 2.457598 TCCAACGCAGAAGACCTATCT 58.542 47.619 0.00 0.00 36.42 1.98
236 237 2.961526 TCCAACGCAGAAGACCTATC 57.038 50.000 0.00 0.00 0.00 2.08
237 238 2.766263 TCATCCAACGCAGAAGACCTAT 59.234 45.455 0.00 0.00 0.00 2.57
238 239 2.176045 TCATCCAACGCAGAAGACCTA 58.824 47.619 0.00 0.00 0.00 3.08
239 240 0.976641 TCATCCAACGCAGAAGACCT 59.023 50.000 0.00 0.00 0.00 3.85
240 241 2.029838 ATCATCCAACGCAGAAGACC 57.970 50.000 0.00 0.00 0.00 3.85
241 242 3.426695 CCAAATCATCCAACGCAGAAGAC 60.427 47.826 0.00 0.00 0.00 3.01
242 243 2.749076 CCAAATCATCCAACGCAGAAGA 59.251 45.455 0.00 0.00 0.00 2.87
243 244 2.749076 TCCAAATCATCCAACGCAGAAG 59.251 45.455 0.00 0.00 0.00 2.85
244 245 2.789213 TCCAAATCATCCAACGCAGAA 58.211 42.857 0.00 0.00 0.00 3.02
245 246 2.488204 TCCAAATCATCCAACGCAGA 57.512 45.000 0.00 0.00 0.00 4.26
246 247 2.223641 CCATCCAAATCATCCAACGCAG 60.224 50.000 0.00 0.00 0.00 5.18
247 248 1.750206 CCATCCAAATCATCCAACGCA 59.250 47.619 0.00 0.00 0.00 5.24
248 249 1.750778 ACCATCCAAATCATCCAACGC 59.249 47.619 0.00 0.00 0.00 4.84
249 250 2.754552 ACACCATCCAAATCATCCAACG 59.245 45.455 0.00 0.00 0.00 4.10
250 251 5.913137 TTACACCATCCAAATCATCCAAC 57.087 39.130 0.00 0.00 0.00 3.77
251 252 5.363292 CCATTACACCATCCAAATCATCCAA 59.637 40.000 0.00 0.00 0.00 3.53
252 253 4.894705 CCATTACACCATCCAAATCATCCA 59.105 41.667 0.00 0.00 0.00 3.41
253 254 4.895297 ACCATTACACCATCCAAATCATCC 59.105 41.667 0.00 0.00 0.00 3.51
254 255 5.737063 GCACCATTACACCATCCAAATCATC 60.737 44.000 0.00 0.00 0.00 2.92
255 256 4.099881 GCACCATTACACCATCCAAATCAT 59.900 41.667 0.00 0.00 0.00 2.45
256 257 3.446873 GCACCATTACACCATCCAAATCA 59.553 43.478 0.00 0.00 0.00 2.57
257 258 3.181476 GGCACCATTACACCATCCAAATC 60.181 47.826 0.00 0.00 0.00 2.17
258 259 2.765699 GGCACCATTACACCATCCAAAT 59.234 45.455 0.00 0.00 0.00 2.32
259 260 2.175202 GGCACCATTACACCATCCAAA 58.825 47.619 0.00 0.00 0.00 3.28
260 261 1.357420 AGGCACCATTACACCATCCAA 59.643 47.619 0.00 0.00 0.00 3.53
261 262 0.998928 AGGCACCATTACACCATCCA 59.001 50.000 0.00 0.00 0.00 3.41
262 263 2.024414 GAAGGCACCATTACACCATCC 58.976 52.381 0.00 0.00 0.00 3.51
263 264 1.670811 CGAAGGCACCATTACACCATC 59.329 52.381 0.00 0.00 0.00 3.51
264 265 1.750193 CGAAGGCACCATTACACCAT 58.250 50.000 0.00 0.00 0.00 3.55
265 266 0.958382 GCGAAGGCACCATTACACCA 60.958 55.000 0.00 0.00 39.62 4.17
266 267 1.800681 GCGAAGGCACCATTACACC 59.199 57.895 0.00 0.00 39.62 4.16
267 268 1.296056 ACGCGAAGGCACCATTACAC 61.296 55.000 15.93 0.00 39.92 2.90
268 269 1.004320 ACGCGAAGGCACCATTACA 60.004 52.632 15.93 0.00 39.92 2.41
269 270 1.423845 CACGCGAAGGCACCATTAC 59.576 57.895 15.93 0.00 39.92 1.89
270 271 1.743623 CCACGCGAAGGCACCATTA 60.744 57.895 15.93 0.00 39.92 1.90
271 272 3.055719 CCACGCGAAGGCACCATT 61.056 61.111 15.93 0.00 39.92 3.16
272 273 3.545124 TTCCACGCGAAGGCACCAT 62.545 57.895 15.93 0.00 39.92 3.55
273 274 4.243008 TTCCACGCGAAGGCACCA 62.243 61.111 15.93 0.00 39.92 4.17
274 275 3.723348 GTTCCACGCGAAGGCACC 61.723 66.667 15.93 1.74 39.92 5.01
275 276 3.723348 GGTTCCACGCGAAGGCAC 61.723 66.667 15.93 14.79 39.92 5.01
276 277 2.951475 AAAGGTTCCACGCGAAGGCA 62.951 55.000 15.93 0.92 39.92 4.75
277 278 2.258726 AAAGGTTCCACGCGAAGGC 61.259 57.895 15.93 2.16 0.00 4.35
278 279 1.164041 ACAAAGGTTCCACGCGAAGG 61.164 55.000 15.93 15.14 0.00 3.46
279 280 0.661020 AACAAAGGTTCCACGCGAAG 59.339 50.000 15.93 4.40 29.00 3.79
280 281 0.658897 GAACAAAGGTTCCACGCGAA 59.341 50.000 15.93 0.00 46.18 4.70
281 282 2.313267 GAACAAAGGTTCCACGCGA 58.687 52.632 15.93 0.00 46.18 5.87
282 283 4.914291 GAACAAAGGTTCCACGCG 57.086 55.556 3.53 3.53 46.18 6.01
289 290 5.128992 ACGACAAAAACAGAACAAAGGTT 57.871 34.783 0.00 0.00 40.76 3.50
290 291 4.216687 TGACGACAAAAACAGAACAAAGGT 59.783 37.500 0.00 0.00 0.00 3.50
291 292 4.728534 TGACGACAAAAACAGAACAAAGG 58.271 39.130 0.00 0.00 0.00 3.11
292 293 6.258160 AGATGACGACAAAAACAGAACAAAG 58.742 36.000 0.00 0.00 0.00 2.77
293 294 6.189677 AGATGACGACAAAAACAGAACAAA 57.810 33.333 0.00 0.00 0.00 2.83
294 295 5.811399 AGATGACGACAAAAACAGAACAA 57.189 34.783 0.00 0.00 0.00 2.83
295 296 5.448496 CCAAGATGACGACAAAAACAGAACA 60.448 40.000 0.00 0.00 0.00 3.18
296 297 4.970003 CCAAGATGACGACAAAAACAGAAC 59.030 41.667 0.00 0.00 0.00 3.01
297 298 4.878971 TCCAAGATGACGACAAAAACAGAA 59.121 37.500 0.00 0.00 0.00 3.02
298 299 4.272504 GTCCAAGATGACGACAAAAACAGA 59.727 41.667 0.00 0.00 0.00 3.41
299 300 4.273480 AGTCCAAGATGACGACAAAAACAG 59.727 41.667 0.00 0.00 40.26 3.16
300 301 4.035091 CAGTCCAAGATGACGACAAAAACA 59.965 41.667 0.00 0.00 40.26 2.83
301 302 4.272504 TCAGTCCAAGATGACGACAAAAAC 59.727 41.667 0.00 0.00 40.26 2.43
302 303 4.447290 TCAGTCCAAGATGACGACAAAAA 58.553 39.130 0.00 0.00 40.26 1.94
303 304 4.066646 TCAGTCCAAGATGACGACAAAA 57.933 40.909 0.00 0.00 40.26 2.44
304 305 3.744238 TCAGTCCAAGATGACGACAAA 57.256 42.857 0.00 0.00 40.26 2.83
305 306 3.069586 AGTTCAGTCCAAGATGACGACAA 59.930 43.478 0.00 0.00 40.26 3.18
306 307 2.628178 AGTTCAGTCCAAGATGACGACA 59.372 45.455 0.00 0.00 40.26 4.35
307 308 3.305398 AGTTCAGTCCAAGATGACGAC 57.695 47.619 0.00 0.00 40.26 4.34
308 309 3.069586 ACAAGTTCAGTCCAAGATGACGA 59.930 43.478 0.00 0.00 40.26 4.20
309 310 3.393800 ACAAGTTCAGTCCAAGATGACG 58.606 45.455 0.00 0.00 40.26 4.35
310 311 5.514279 CAAACAAGTTCAGTCCAAGATGAC 58.486 41.667 0.00 0.00 35.43 3.06
311 312 4.036734 GCAAACAAGTTCAGTCCAAGATGA 59.963 41.667 0.00 0.00 0.00 2.92
312 313 4.037208 AGCAAACAAGTTCAGTCCAAGATG 59.963 41.667 0.00 0.00 0.00 2.90
313 314 4.037208 CAGCAAACAAGTTCAGTCCAAGAT 59.963 41.667 0.00 0.00 0.00 2.40
314 315 3.378112 CAGCAAACAAGTTCAGTCCAAGA 59.622 43.478 0.00 0.00 0.00 3.02
315 316 3.699067 CAGCAAACAAGTTCAGTCCAAG 58.301 45.455 0.00 0.00 0.00 3.61
316 317 2.159254 GCAGCAAACAAGTTCAGTCCAA 60.159 45.455 0.00 0.00 0.00 3.53
317 318 1.405105 GCAGCAAACAAGTTCAGTCCA 59.595 47.619 0.00 0.00 0.00 4.02
318 319 1.678101 AGCAGCAAACAAGTTCAGTCC 59.322 47.619 0.00 0.00 0.00 3.85
319 320 3.427161 AAGCAGCAAACAAGTTCAGTC 57.573 42.857 0.00 0.00 0.00 3.51
320 321 3.874392 AAAGCAGCAAACAAGTTCAGT 57.126 38.095 0.00 0.00 0.00 3.41
321 322 3.553105 GGAAAAGCAGCAAACAAGTTCAG 59.447 43.478 0.00 0.00 0.00 3.02
322 323 3.520569 GGAAAAGCAGCAAACAAGTTCA 58.479 40.909 0.00 0.00 0.00 3.18
323 324 2.535574 CGGAAAAGCAGCAAACAAGTTC 59.464 45.455 0.00 0.00 0.00 3.01
324 325 2.539476 CGGAAAAGCAGCAAACAAGTT 58.461 42.857 0.00 0.00 0.00 2.66
325 326 1.202405 CCGGAAAAGCAGCAAACAAGT 60.202 47.619 0.00 0.00 0.00 3.16
326 327 1.490621 CCGGAAAAGCAGCAAACAAG 58.509 50.000 0.00 0.00 0.00 3.16
327 328 0.103937 CCCGGAAAAGCAGCAAACAA 59.896 50.000 0.73 0.00 0.00 2.83
328 329 1.040339 ACCCGGAAAAGCAGCAAACA 61.040 50.000 0.73 0.00 0.00 2.83
329 330 0.104120 AACCCGGAAAAGCAGCAAAC 59.896 50.000 0.73 0.00 0.00 2.93
330 331 1.693627 TAACCCGGAAAAGCAGCAAA 58.306 45.000 0.73 0.00 0.00 3.68
331 332 1.917872 ATAACCCGGAAAAGCAGCAA 58.082 45.000 0.73 0.00 0.00 3.91
332 333 2.791347 TATAACCCGGAAAAGCAGCA 57.209 45.000 0.73 0.00 0.00 4.41
333 334 3.477530 AGATATAACCCGGAAAAGCAGC 58.522 45.455 0.73 0.00 0.00 5.25
334 335 6.289064 AGTAAGATATAACCCGGAAAAGCAG 58.711 40.000 0.73 0.00 0.00 4.24
335 336 6.243216 AGTAAGATATAACCCGGAAAAGCA 57.757 37.500 0.73 0.00 0.00 3.91
336 337 8.554528 GTTTAGTAAGATATAACCCGGAAAAGC 58.445 37.037 0.73 0.00 0.00 3.51
337 338 9.828039 AGTTTAGTAAGATATAACCCGGAAAAG 57.172 33.333 0.73 0.00 0.00 2.27
338 339 9.603921 CAGTTTAGTAAGATATAACCCGGAAAA 57.396 33.333 0.73 0.00 0.00 2.29
339 340 8.206189 CCAGTTTAGTAAGATATAACCCGGAAA 58.794 37.037 0.73 0.00 0.00 3.13
340 341 7.345392 ACCAGTTTAGTAAGATATAACCCGGAA 59.655 37.037 0.73 0.00 0.00 4.30
341 342 6.840705 ACCAGTTTAGTAAGATATAACCCGGA 59.159 38.462 0.73 0.00 0.00 5.14
342 343 6.927381 CACCAGTTTAGTAAGATATAACCCGG 59.073 42.308 0.00 0.00 0.00 5.73
343 344 6.423001 GCACCAGTTTAGTAAGATATAACCCG 59.577 42.308 0.00 0.00 0.00 5.28
344 345 6.709397 GGCACCAGTTTAGTAAGATATAACCC 59.291 42.308 0.00 0.00 0.00 4.11
345 346 7.441458 CAGGCACCAGTTTAGTAAGATATAACC 59.559 40.741 0.00 0.00 0.00 2.85
346 347 8.202137 TCAGGCACCAGTTTAGTAAGATATAAC 58.798 37.037 0.00 0.00 0.00 1.89
347 348 8.313944 TCAGGCACCAGTTTAGTAAGATATAA 57.686 34.615 0.00 0.00 0.00 0.98
348 349 7.015292 CCTCAGGCACCAGTTTAGTAAGATATA 59.985 40.741 0.00 0.00 0.00 0.86
349 350 6.183361 CCTCAGGCACCAGTTTAGTAAGATAT 60.183 42.308 0.00 0.00 0.00 1.63
350 351 5.128827 CCTCAGGCACCAGTTTAGTAAGATA 59.871 44.000 0.00 0.00 0.00 1.98
351 352 4.080863 CCTCAGGCACCAGTTTAGTAAGAT 60.081 45.833 0.00 0.00 0.00 2.40
352 353 3.260884 CCTCAGGCACCAGTTTAGTAAGA 59.739 47.826 0.00 0.00 0.00 2.10
353 354 3.600388 CCTCAGGCACCAGTTTAGTAAG 58.400 50.000 0.00 0.00 0.00 2.34
354 355 2.304761 CCCTCAGGCACCAGTTTAGTAA 59.695 50.000 0.00 0.00 0.00 2.24
355 356 1.906574 CCCTCAGGCACCAGTTTAGTA 59.093 52.381 0.00 0.00 0.00 1.82
356 357 0.693049 CCCTCAGGCACCAGTTTAGT 59.307 55.000 0.00 0.00 0.00 2.24
357 358 3.558674 CCCTCAGGCACCAGTTTAG 57.441 57.895 0.00 0.00 0.00 1.85
376 377 5.394322 CGCGTCCGGCTTTAAATTAATAAAG 59.606 40.000 0.00 6.41 42.93 1.85
377 378 5.163774 ACGCGTCCGGCTTTAAATTAATAAA 60.164 36.000 5.58 0.00 40.44 1.40
378 379 4.332268 ACGCGTCCGGCTTTAAATTAATAA 59.668 37.500 5.58 0.00 40.44 1.40
379 380 3.870419 ACGCGTCCGGCTTTAAATTAATA 59.130 39.130 5.58 0.00 40.44 0.98
380 381 2.679336 ACGCGTCCGGCTTTAAATTAAT 59.321 40.909 5.58 0.00 40.44 1.40
381 382 2.075338 ACGCGTCCGGCTTTAAATTAA 58.925 42.857 5.58 0.00 40.44 1.40
382 383 1.660104 GACGCGTCCGGCTTTAAATTA 59.340 47.619 28.61 0.00 40.09 1.40
383 384 0.445043 GACGCGTCCGGCTTTAAATT 59.555 50.000 28.61 0.00 40.09 1.82
384 385 2.084013 GACGCGTCCGGCTTTAAAT 58.916 52.632 28.61 0.00 40.09 1.40
385 386 3.553039 GACGCGTCCGGCTTTAAA 58.447 55.556 28.61 0.00 40.09 1.52
400 401 2.342910 TTGGAACGAAGACGCTAGAC 57.657 50.000 0.00 0.00 43.96 2.59
401 402 3.374220 TTTTGGAACGAAGACGCTAGA 57.626 42.857 0.00 0.00 43.96 2.43
421 422 3.960102 TCCTCCTTCATTGCACAGTTTTT 59.040 39.130 0.00 0.00 0.00 1.94
422 423 3.565307 TCCTCCTTCATTGCACAGTTTT 58.435 40.909 0.00 0.00 0.00 2.43
423 424 3.152341 CTCCTCCTTCATTGCACAGTTT 58.848 45.455 0.00 0.00 0.00 2.66
424 425 2.553904 CCTCCTCCTTCATTGCACAGTT 60.554 50.000 0.00 0.00 0.00 3.16
425 426 1.004044 CCTCCTCCTTCATTGCACAGT 59.996 52.381 0.00 0.00 0.00 3.55
426 427 1.747709 CCTCCTCCTTCATTGCACAG 58.252 55.000 0.00 0.00 0.00 3.66
427 428 0.322816 GCCTCCTCCTTCATTGCACA 60.323 55.000 0.00 0.00 0.00 4.57
428 429 1.372087 CGCCTCCTCCTTCATTGCAC 61.372 60.000 0.00 0.00 0.00 4.57
429 430 1.078214 CGCCTCCTCCTTCATTGCA 60.078 57.895 0.00 0.00 0.00 4.08
430 431 2.476320 GCGCCTCCTCCTTCATTGC 61.476 63.158 0.00 0.00 0.00 3.56
431 432 0.813210 GAGCGCCTCCTCCTTCATTG 60.813 60.000 2.29 0.00 0.00 2.82
432 433 1.524482 GAGCGCCTCCTCCTTCATT 59.476 57.895 2.29 0.00 0.00 2.57
433 434 2.790791 CGAGCGCCTCCTCCTTCAT 61.791 63.158 2.29 0.00 0.00 2.57
434 435 3.452786 CGAGCGCCTCCTCCTTCA 61.453 66.667 2.29 0.00 0.00 3.02
435 436 4.882396 GCGAGCGCCTCCTCCTTC 62.882 72.222 2.29 0.00 34.56 3.46
452 453 3.964875 GTGTTGTGTGCCAGGCGG 61.965 66.667 7.03 0.00 0.00 6.13
453 454 4.312231 CGTGTTGTGTGCCAGGCG 62.312 66.667 7.03 0.00 0.00 5.52
454 455 2.896801 CTCGTGTTGTGTGCCAGGC 61.897 63.158 3.66 3.66 0.00 4.85
455 456 2.896801 GCTCGTGTTGTGTGCCAGG 61.897 63.158 0.00 0.00 0.00 4.45
456 457 2.633657 GCTCGTGTTGTGTGCCAG 59.366 61.111 0.00 0.00 0.00 4.85
457 458 2.899838 GGCTCGTGTTGTGTGCCA 60.900 61.111 0.00 0.00 42.79 4.92
458 459 2.392613 CTTGGCTCGTGTTGTGTGCC 62.393 60.000 0.00 0.00 43.49 5.01
459 460 1.009675 CTTGGCTCGTGTTGTGTGC 60.010 57.895 0.00 0.00 0.00 4.57
460 461 1.648720 CCTTGGCTCGTGTTGTGTG 59.351 57.895 0.00 0.00 0.00 3.82
461 462 1.525995 CCCTTGGCTCGTGTTGTGT 60.526 57.895 0.00 0.00 0.00 3.72
462 463 2.908073 GCCCTTGGCTCGTGTTGTG 61.908 63.158 0.00 0.00 46.69 3.33
463 464 2.594592 GCCCTTGGCTCGTGTTGT 60.595 61.111 0.00 0.00 46.69 3.32
474 475 3.192954 TTTGCAACTCGCGCCCTTG 62.193 57.895 0.00 3.40 46.97 3.61
475 476 2.904866 TTTGCAACTCGCGCCCTT 60.905 55.556 0.00 0.00 46.97 3.95
476 477 3.357079 CTTTGCAACTCGCGCCCT 61.357 61.111 0.00 0.00 46.97 5.19
480 481 2.981560 ATGGGCTTTGCAACTCGCG 61.982 57.895 0.00 0.00 46.97 5.87
481 482 1.444895 CATGGGCTTTGCAACTCGC 60.445 57.895 0.00 1.94 42.89 5.03
497 498 1.153086 GCCTGATTGAGGGCGTCAT 60.153 57.895 11.09 1.49 43.07 3.06
534 535 1.138266 TCACCGCTGCTAATCCTAACC 59.862 52.381 0.00 0.00 0.00 2.85
538 539 0.108138 GTGTCACCGCTGCTAATCCT 60.108 55.000 0.00 0.00 0.00 3.24
539 540 1.090052 GGTGTCACCGCTGCTAATCC 61.090 60.000 6.18 0.00 0.00 3.01
540 541 1.090052 GGGTGTCACCGCTGCTAATC 61.090 60.000 15.93 0.00 39.83 1.75
543 544 2.603473 AGGGTGTCACCGCTGCTA 60.603 61.111 15.93 0.00 39.83 3.49
548 549 2.167398 TAGAAGCAGGGTGTCACCGC 62.167 60.000 15.93 14.10 39.83 5.68
560 561 5.582269 CGATTTCCTCTTTGACATAGAAGCA 59.418 40.000 0.00 0.00 0.00 3.91
564 565 4.442706 GGCGATTTCCTCTTTGACATAGA 58.557 43.478 0.00 0.00 0.00 1.98
570 571 1.722011 GTCGGCGATTTCCTCTTTGA 58.278 50.000 14.79 0.00 0.00 2.69
610 611 4.314440 TTGGCTGAAGCGGCGACT 62.314 61.111 12.98 4.18 43.26 4.18
611 612 4.090057 GTTGGCTGAAGCGGCGAC 62.090 66.667 12.98 1.23 43.26 5.19
612 613 4.617520 TGTTGGCTGAAGCGGCGA 62.618 61.111 12.98 0.00 43.26 5.54
613 614 4.389576 GTGTTGGCTGAAGCGGCG 62.390 66.667 0.51 0.51 43.26 6.46
614 615 4.043200 GGTGTTGGCTGAAGCGGC 62.043 66.667 0.00 0.00 43.26 6.53
615 616 3.726517 CGGTGTTGGCTGAAGCGG 61.727 66.667 0.00 0.00 43.26 5.52
635 636 1.153289 ACACATCAGAGCCGGCATC 60.153 57.895 31.54 22.25 0.00 3.91
647 648 2.492484 ACACCTACTTCGAGGACACATC 59.508 50.000 0.00 0.00 39.15 3.06
656 657 2.496070 CCATGGAAGACACCTACTTCGA 59.504 50.000 5.56 0.00 42.96 3.71
657 658 2.893637 CCATGGAAGACACCTACTTCG 58.106 52.381 5.56 0.00 42.96 3.79
662 663 3.398318 TCTAGCCATGGAAGACACCTA 57.602 47.619 18.40 4.33 0.00 3.08
759 918 4.041198 ACGACACCCTCAATTTTCTCCTTA 59.959 41.667 0.00 0.00 0.00 2.69
805 964 1.236616 CCACATGGCTTCGTCTGCAA 61.237 55.000 0.00 0.00 0.00 4.08
889 1048 0.893727 CGGTGTGAAAGGGGAAAGGG 60.894 60.000 0.00 0.00 0.00 3.95
976 1141 3.127533 GCTGCTCCGCGGAATTGT 61.128 61.111 30.53 0.00 37.02 2.71
1769 3155 1.215244 CAGATGCTGGCATACGACTG 58.785 55.000 8.11 7.64 36.70 3.51
2057 3458 3.154710 AGGCATGCATATCCATCACTTG 58.845 45.455 21.36 0.00 0.00 3.16
2058 3459 3.074094 AGAGGCATGCATATCCATCACTT 59.926 43.478 21.36 0.00 0.00 3.16
2069 3470 1.271762 ACAACACTCAGAGGCATGCAT 60.272 47.619 21.36 13.78 0.00 3.96
2070 3471 0.109153 ACAACACTCAGAGGCATGCA 59.891 50.000 21.36 0.00 0.00 3.96
2071 3472 2.005451 CTACAACACTCAGAGGCATGC 58.995 52.381 9.90 9.90 0.00 4.06
2072 3473 2.005451 GCTACAACACTCAGAGGCATG 58.995 52.381 1.53 0.00 0.00 4.06
2115 3516 4.589374 AGGTACCCAGATTAGTACATGAGC 59.411 45.833 8.74 0.00 40.51 4.26
2118 3519 6.071984 AGAGAGGTACCCAGATTAGTACATG 58.928 44.000 8.74 0.00 40.51 3.21
2124 3525 4.100189 CACCAAGAGAGGTACCCAGATTAG 59.900 50.000 8.74 0.00 40.77 1.73
2138 3539 0.535335 GCCACGGATACACCAAGAGA 59.465 55.000 0.00 0.00 38.90 3.10
2144 3545 0.388294 GGTAGAGCCACGGATACACC 59.612 60.000 0.00 0.00 37.17 4.16
2146 3547 2.174210 ACTAGGTAGAGCCACGGATACA 59.826 50.000 0.00 0.00 40.61 2.29
2147 3548 2.861274 ACTAGGTAGAGCCACGGATAC 58.139 52.381 0.00 0.00 40.61 2.24
2148 3549 3.589951 AACTAGGTAGAGCCACGGATA 57.410 47.619 0.00 0.00 40.61 2.59
2149 3550 2.456073 AACTAGGTAGAGCCACGGAT 57.544 50.000 0.00 0.00 40.61 4.18
2150 3551 3.019564 GTTAACTAGGTAGAGCCACGGA 58.980 50.000 0.00 0.00 40.61 4.69
2151 3552 2.756760 TGTTAACTAGGTAGAGCCACGG 59.243 50.000 7.22 0.00 40.61 4.94
2152 3553 4.171754 GTTGTTAACTAGGTAGAGCCACG 58.828 47.826 7.22 0.00 40.61 4.94
2153 3554 4.502016 GGTTGTTAACTAGGTAGAGCCAC 58.498 47.826 7.22 0.00 40.61 5.01
2155 3556 3.445096 TCGGTTGTTAACTAGGTAGAGCC 59.555 47.826 7.22 0.00 37.58 4.70
2156 3557 4.397417 TCTCGGTTGTTAACTAGGTAGAGC 59.603 45.833 7.22 0.00 0.00 4.09
2157 3558 6.496571 CATCTCGGTTGTTAACTAGGTAGAG 58.503 44.000 7.22 8.23 0.00 2.43
2158 3559 5.163581 GCATCTCGGTTGTTAACTAGGTAGA 60.164 44.000 7.22 5.27 0.00 2.59
2160 3561 4.463539 TGCATCTCGGTTGTTAACTAGGTA 59.536 41.667 7.22 0.00 0.00 3.08
2161 3562 3.259876 TGCATCTCGGTTGTTAACTAGGT 59.740 43.478 7.22 0.00 0.00 3.08
2252 3664 0.670546 ACCTCTGATTCCAACGCACG 60.671 55.000 0.00 0.00 0.00 5.34
2612 5446 4.551702 TTGTTATAGCTGCAGAACTCCA 57.448 40.909 20.43 2.99 0.00 3.86
2661 5505 2.043953 GCCCCTGTTCCCACATCC 60.044 66.667 0.00 0.00 30.39 3.51
2687 5538 7.373493 ACTGGTTTTCATGATTTGACAGAATC 58.627 34.615 16.71 0.00 36.73 2.52
2718 6479 2.423577 ACCAACAACGACAATCCTAGC 58.576 47.619 0.00 0.00 0.00 3.42
2837 6616 5.183713 TGGATGTTCTAATTTGCTGAACTGG 59.816 40.000 0.00 0.00 40.27 4.00
2966 6745 5.922544 CCTTTTCTTTACCAATGAGCACTTG 59.077 40.000 0.00 0.00 0.00 3.16
2967 6746 5.011023 CCCTTTTCTTTACCAATGAGCACTT 59.989 40.000 0.00 0.00 0.00 3.16
2969 6748 4.321974 CCCCTTTTCTTTACCAATGAGCAC 60.322 45.833 0.00 0.00 0.00 4.40
2970 6749 3.831911 CCCCTTTTCTTTACCAATGAGCA 59.168 43.478 0.00 0.00 0.00 4.26
2971 6750 4.086457 TCCCCTTTTCTTTACCAATGAGC 58.914 43.478 0.00 0.00 0.00 4.26
2972 6751 4.158579 GCTCCCCTTTTCTTTACCAATGAG 59.841 45.833 0.00 0.00 0.00 2.90
2973 6752 4.086457 GCTCCCCTTTTCTTTACCAATGA 58.914 43.478 0.00 0.00 0.00 2.57
2974 6753 3.831911 TGCTCCCCTTTTCTTTACCAATG 59.168 43.478 0.00 0.00 0.00 2.82
2975 6754 4.126520 TGCTCCCCTTTTCTTTACCAAT 57.873 40.909 0.00 0.00 0.00 3.16
2976 6755 3.603965 TGCTCCCCTTTTCTTTACCAA 57.396 42.857 0.00 0.00 0.00 3.67
2977 6756 3.181423 ACATGCTCCCCTTTTCTTTACCA 60.181 43.478 0.00 0.00 0.00 3.25
2978 6757 3.193479 CACATGCTCCCCTTTTCTTTACC 59.807 47.826 0.00 0.00 0.00 2.85
2979 6758 3.826729 ACACATGCTCCCCTTTTCTTTAC 59.173 43.478 0.00 0.00 0.00 2.01
2984 6766 3.181466 ACAAAACACATGCTCCCCTTTTC 60.181 43.478 0.00 0.00 0.00 2.29
2988 6770 1.331214 CACAAAACACATGCTCCCCT 58.669 50.000 0.00 0.00 0.00 4.79
3021 6803 6.703607 ACAGAGTGTTGTCTTTCTGTTGATAG 59.296 38.462 0.45 0.00 45.80 2.08
3022 6804 6.582636 ACAGAGTGTTGTCTTTCTGTTGATA 58.417 36.000 0.45 0.00 45.80 2.15
3023 6805 5.431765 ACAGAGTGTTGTCTTTCTGTTGAT 58.568 37.500 0.45 0.00 45.80 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.