Multiple sequence alignment - TraesCS6D01G350300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G350300 chr6D 100.000 6178 0 0 1 6178 447904530 447910707 0.000000e+00 11409.0
1 TraesCS6D01G350300 chr6D 81.609 174 22 7 5686 5852 448432043 448431873 1.080000e-27 135.0
2 TraesCS6D01G350300 chr6A 90.820 2451 120 41 2 2405 594491192 594493584 0.000000e+00 3182.0
3 TraesCS6D01G350300 chr6A 94.505 1110 57 4 3194 4301 594494358 594495465 0.000000e+00 1709.0
4 TraesCS6D01G350300 chr6A 95.049 1030 47 4 4312 5339 594495514 594496541 0.000000e+00 1616.0
5 TraesCS6D01G350300 chr6A 92.619 840 54 6 5344 6178 594496707 594497543 0.000000e+00 1201.0
6 TraesCS6D01G350300 chr6A 95.529 671 29 1 2515 3185 594493643 594494312 0.000000e+00 1072.0
7 TraesCS6D01G350300 chr6B 92.609 1556 81 17 4312 5850 678739077 678740615 0.000000e+00 2206.0
8 TraesCS6D01G350300 chr6B 87.480 1861 95 55 2 1823 678734653 678736414 0.000000e+00 2019.0
9 TraesCS6D01G350300 chr6B 94.826 1121 48 6 3183 4301 678737916 678739028 0.000000e+00 1740.0
10 TraesCS6D01G350300 chr6B 94.271 803 41 1 2383 3185 678737084 678737881 0.000000e+00 1223.0
11 TraesCS6D01G350300 chr6B 90.018 541 39 10 1848 2375 678736479 678737017 0.000000e+00 686.0
12 TraesCS6D01G350300 chr6B 75.275 546 90 30 5430 5949 679289286 679288760 1.040000e-52 219.0
13 TraesCS6D01G350300 chr6B 75.275 546 90 30 5430 5949 679326117 679326643 1.040000e-52 219.0
14 TraesCS6D01G350300 chr3D 92.386 394 22 2 5531 5916 143023699 143024092 7.000000e-154 555.0
15 TraesCS6D01G350300 chr3D 91.973 299 23 1 5880 6178 143024094 143024391 9.580000e-113 418.0
16 TraesCS6D01G350300 chr7D 91.878 394 25 2 5530 5916 383405938 383405545 1.510000e-150 544.0
17 TraesCS6D01G350300 chr7D 91.117 394 27 3 5530 5916 100778351 100778743 1.530000e-145 527.0
18 TraesCS6D01G350300 chr7D 91.973 299 23 1 5880 6178 100778745 100779042 9.580000e-113 418.0
19 TraesCS6D01G350300 chr7D 92.123 292 22 1 5880 6171 383405543 383405253 1.600000e-110 411.0
20 TraesCS6D01G350300 chr7D 90.301 299 28 1 5880 6178 620011131 620010834 2.090000e-104 390.0
21 TraesCS6D01G350300 chr7D 92.271 207 9 1 5530 5729 585270391 585270597 2.820000e-73 287.0
22 TraesCS6D01G350300 chr7D 79.188 197 41 0 3825 4021 77087687 77087883 3.000000e-28 137.0
23 TraesCS6D01G350300 chr7D 78.788 198 35 6 2684 2876 77085132 77085327 6.500000e-25 126.0
24 TraesCS6D01G350300 chr2D 91.624 394 25 5 5530 5916 577524221 577523829 7.050000e-149 538.0
25 TraesCS6D01G350300 chr2D 91.639 299 24 1 5880 6178 577523827 577523530 4.460000e-111 412.0
26 TraesCS6D01G350300 chr5D 90.863 394 27 2 5530 5916 449433496 449433887 2.550000e-143 520.0
27 TraesCS6D01G350300 chr5D 92.308 299 22 1 5880 6178 507901389 507901686 2.060000e-114 424.0
28 TraesCS6D01G350300 chr5D 90.970 299 26 1 5880 6178 449433889 449434186 9.650000e-108 401.0
29 TraesCS6D01G350300 chr5D 91.304 207 10 3 5530 5729 454565286 454565491 6.100000e-70 276.0
30 TraesCS6D01G350300 chr2B 90.635 299 27 1 5880 6178 574792453 574792156 4.490000e-106 396.0
31 TraesCS6D01G350300 chr7A 82.828 198 30 4 2685 2880 92895690 92895495 2.290000e-39 174.0
32 TraesCS6D01G350300 chr7B 80.473 169 31 2 3854 4021 24048447 24048614 1.810000e-25 128.0
33 TraesCS6D01G350300 chr7B 100.000 29 0 0 2848 2876 24046243 24046271 3.000000e-03 54.7
34 TraesCS6D01G350300 chr3B 83.065 124 20 1 646 769 529783545 529783667 1.820000e-20 111.0
35 TraesCS6D01G350300 chr3B 82.178 101 13 5 661 758 761779491 761779589 1.430000e-11 82.4
36 TraesCS6D01G350300 chrUn 90.909 66 3 1 3959 4021 84650213 84650278 1.100000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G350300 chr6D 447904530 447910707 6177 False 11409.0 11409 100.0000 1 6178 1 chr6D.!!$F1 6177
1 TraesCS6D01G350300 chr6A 594491192 594497543 6351 False 1756.0 3182 93.7044 2 6178 5 chr6A.!!$F1 6176
2 TraesCS6D01G350300 chr6B 678734653 678740615 5962 False 1574.8 2206 91.8408 2 5850 5 chr6B.!!$F2 5848
3 TraesCS6D01G350300 chr6B 679288760 679289286 526 True 219.0 219 75.2750 5430 5949 1 chr6B.!!$R1 519
4 TraesCS6D01G350300 chr6B 679326117 679326643 526 False 219.0 219 75.2750 5430 5949 1 chr6B.!!$F1 519
5 TraesCS6D01G350300 chr3D 143023699 143024391 692 False 486.5 555 92.1795 5531 6178 2 chr3D.!!$F1 647
6 TraesCS6D01G350300 chr7D 383405253 383405938 685 True 477.5 544 92.0005 5530 6171 2 chr7D.!!$R2 641
7 TraesCS6D01G350300 chr7D 100778351 100779042 691 False 472.5 527 91.5450 5530 6178 2 chr7D.!!$F3 648
8 TraesCS6D01G350300 chr2D 577523530 577524221 691 True 475.0 538 91.6315 5530 6178 2 chr2D.!!$R1 648
9 TraesCS6D01G350300 chr5D 449433496 449434186 690 False 460.5 520 90.9165 5530 6178 2 chr5D.!!$F3 648

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
651 666 0.793861 TTTCCAAAGATCGGCGTTCG 59.206 50.000 6.85 0.0 40.90 3.95 F
1183 1227 0.034896 CAGCCGGTGTAGTTCTTGGT 59.965 55.000 1.90 0.0 0.00 3.67 F
2792 3006 0.184933 CCCCCTTCACCAAGAACACA 59.815 55.000 0.00 0.0 31.61 3.72 F
2998 3213 2.231964 TCCTTTTGGTGATGATTGCAGC 59.768 45.455 0.00 0.0 41.38 5.25 F
4438 4731 2.446435 TGCAACTTATTCCTGCCTTCC 58.554 47.619 0.00 0.0 35.13 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2516 2730 0.035343 GGTCCTGCAGGGAGGTAAAC 60.035 60.000 32.23 20.07 46.10 2.01 R
2998 3213 0.109597 GCCCAAAGACAATCTGTGCG 60.110 55.000 0.00 0.00 30.26 5.34 R
3763 4016 0.392863 TCCAGTCCATGTGCCGAATG 60.393 55.000 0.00 0.00 0.00 2.67 R
4717 5012 0.950555 GATGCGTGACCTCTTGTGCA 60.951 55.000 0.00 0.00 36.69 4.57 R
6091 6635 3.260380 GGAGATGCTGAGTAGTATGCCAT 59.740 47.826 0.00 0.00 28.70 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 69 4.023450 TGGCTCAACTCGATTACTATACCG 60.023 45.833 0.00 0.00 0.00 4.02
97 99 8.608844 AAGTTTCTACCATAGAGTTCAAACTG 57.391 34.615 0.00 0.00 39.88 3.16
113 115 4.586841 TCAAACTGTTTTAGACCCCAATGG 59.413 41.667 2.41 0.00 41.37 3.16
261 263 7.975616 GCATCTAAACCAAATCAACATGTACAT 59.024 33.333 1.41 1.41 0.00 2.29
417 428 0.853530 ATCCTCCCATAAGCAACCCC 59.146 55.000 0.00 0.00 0.00 4.95
450 463 3.125316 CAACAGGTTGCCAATGTCAAAG 58.875 45.455 0.00 0.00 33.45 2.77
505 518 8.587952 AACATACTTTTTCATTTGTAACAGGC 57.412 30.769 0.00 0.00 0.00 4.85
547 561 5.468072 TGGTTTCAAAATTTGCGCATACATT 59.532 32.000 12.75 7.59 0.00 2.71
600 614 6.994421 ATGAGTTTTTGGTGGTAAATCCTT 57.006 33.333 0.00 0.00 37.07 3.36
603 617 7.947282 TGAGTTTTTGGTGGTAAATCCTTTAG 58.053 34.615 0.00 0.00 37.07 1.85
616 630 2.626785 TCCTTTAGGGACCATGTGTGA 58.373 47.619 0.00 0.00 39.58 3.58
618 632 2.571653 CCTTTAGGGACCATGTGTGAGA 59.428 50.000 0.00 0.00 37.23 3.27
651 666 0.793861 TTTCCAAAGATCGGCGTTCG 59.206 50.000 6.85 0.00 40.90 3.95
654 669 1.340465 CAAAGATCGGCGTTCGTCG 59.660 57.895 12.90 12.90 43.12 5.12
656 671 1.342082 AAAGATCGGCGTTCGTCGTG 61.342 55.000 17.90 0.00 42.13 4.35
716 731 3.318275 GCTACCTCATCACCTTGTATCGA 59.682 47.826 0.00 0.00 0.00 3.59
720 735 3.253432 CCTCATCACCTTGTATCGATCGA 59.747 47.826 21.86 21.86 0.00 3.59
736 751 3.182972 CGATCGACCGTGTACTTTTGTTT 59.817 43.478 10.26 0.00 0.00 2.83
745 760 4.201542 CGTGTACTTTTGTTTGGTTGTTGC 60.202 41.667 0.00 0.00 0.00 4.17
765 780 9.973450 TTGTTGCTTTATTTATAAAACAGAGCA 57.027 25.926 17.42 17.42 32.10 4.26
801 824 6.266103 TGAGATGAGCATTTTCCAAAGAAACT 59.734 34.615 0.00 0.00 41.69 2.66
802 825 6.453092 AGATGAGCATTTTCCAAAGAAACTG 58.547 36.000 2.54 2.54 41.69 3.16
803 826 5.850557 TGAGCATTTTCCAAAGAAACTGA 57.149 34.783 9.31 0.00 42.35 3.41
804 827 6.409524 TGAGCATTTTCCAAAGAAACTGAT 57.590 33.333 9.31 3.79 42.02 2.90
805 828 6.218019 TGAGCATTTTCCAAAGAAACTGATG 58.782 36.000 9.31 3.26 40.18 3.07
806 829 6.040729 TGAGCATTTTCCAAAGAAACTGATGA 59.959 34.615 9.31 0.00 40.18 2.92
807 830 6.453092 AGCATTTTCCAAAGAAACTGATGAG 58.547 36.000 9.31 0.00 42.35 2.90
808 831 5.119743 GCATTTTCCAAAGAAACTGATGAGC 59.880 40.000 9.31 0.00 42.35 4.26
809 832 5.850557 TTTTCCAAAGAAACTGATGAGCA 57.149 34.783 0.00 0.00 41.69 4.26
810 833 6.409524 TTTTCCAAAGAAACTGATGAGCAT 57.590 33.333 0.00 0.00 41.69 3.79
811 834 6.409524 TTTCCAAAGAAACTGATGAGCATT 57.590 33.333 0.00 0.00 37.07 3.56
812 835 6.409524 TTCCAAAGAAACTGATGAGCATTT 57.590 33.333 0.00 0.00 0.00 2.32
813 836 6.409524 TCCAAAGAAACTGATGAGCATTTT 57.590 33.333 0.00 0.00 32.74 1.82
814 837 6.449698 TCCAAAGAAACTGATGAGCATTTTC 58.550 36.000 5.53 5.53 42.96 2.29
815 838 5.636543 CCAAAGAAACTGATGAGCATTTTCC 59.363 40.000 9.43 0.00 43.39 3.13
816 839 6.218019 CAAAGAAACTGATGAGCATTTTCCA 58.782 36.000 9.43 0.00 43.39 3.53
817 840 6.409524 AAGAAACTGATGAGCATTTTCCAA 57.590 33.333 9.43 0.00 43.39 3.53
818 841 6.409524 AGAAACTGATGAGCATTTTCCAAA 57.590 33.333 9.43 0.00 43.39 3.28
819 842 6.218746 AGAAACTGATGAGCATTTTCCAAAC 58.781 36.000 9.43 0.00 43.39 2.93
820 843 5.534207 AACTGATGAGCATTTTCCAAACA 57.466 34.783 0.00 0.00 0.00 2.83
821 844 5.534207 ACTGATGAGCATTTTCCAAACAA 57.466 34.783 0.00 0.00 0.00 2.83
822 845 5.916318 ACTGATGAGCATTTTCCAAACAAA 58.084 33.333 0.00 0.00 0.00 2.83
823 846 5.754890 ACTGATGAGCATTTTCCAAACAAAC 59.245 36.000 0.00 0.00 0.00 2.93
836 859 8.622948 TTTCCAAACAAACCAAATGTAAAAGT 57.377 26.923 0.00 0.00 0.00 2.66
850 873 4.730966 TGTAAAAGTACAAAGGGGCATCA 58.269 39.130 0.00 0.00 37.29 3.07
851 874 5.329399 TGTAAAAGTACAAAGGGGCATCAT 58.671 37.500 0.00 0.00 37.29 2.45
852 875 5.417580 TGTAAAAGTACAAAGGGGCATCATC 59.582 40.000 0.00 0.00 37.29 2.92
853 876 4.322057 AAAGTACAAAGGGGCATCATCT 57.678 40.909 0.00 0.00 0.00 2.90
854 877 5.450818 AAAGTACAAAGGGGCATCATCTA 57.549 39.130 0.00 0.00 0.00 1.98
901 927 3.449746 TGTTGTCCCCTAAATTCCCAG 57.550 47.619 0.00 0.00 0.00 4.45
1183 1227 0.034896 CAGCCGGTGTAGTTCTTGGT 59.965 55.000 1.90 0.00 0.00 3.67
1184 1228 0.763035 AGCCGGTGTAGTTCTTGGTT 59.237 50.000 1.90 0.00 0.00 3.67
1185 1229 1.154197 GCCGGTGTAGTTCTTGGTTC 58.846 55.000 1.90 0.00 0.00 3.62
1186 1230 1.270678 GCCGGTGTAGTTCTTGGTTCT 60.271 52.381 1.90 0.00 0.00 3.01
1187 1231 2.809299 GCCGGTGTAGTTCTTGGTTCTT 60.809 50.000 1.90 0.00 0.00 2.52
1188 1232 3.473625 CCGGTGTAGTTCTTGGTTCTTT 58.526 45.455 0.00 0.00 0.00 2.52
1189 1233 3.250040 CCGGTGTAGTTCTTGGTTCTTTG 59.750 47.826 0.00 0.00 0.00 2.77
1190 1234 3.303791 CGGTGTAGTTCTTGGTTCTTTGC 60.304 47.826 0.00 0.00 0.00 3.68
1191 1235 3.883489 GGTGTAGTTCTTGGTTCTTTGCT 59.117 43.478 0.00 0.00 0.00 3.91
1192 1236 4.338400 GGTGTAGTTCTTGGTTCTTTGCTT 59.662 41.667 0.00 0.00 0.00 3.91
1193 1237 5.273944 GTGTAGTTCTTGGTTCTTTGCTTG 58.726 41.667 0.00 0.00 0.00 4.01
1194 1238 3.443099 AGTTCTTGGTTCTTTGCTTGC 57.557 42.857 0.00 0.00 0.00 4.01
1259 1321 4.680237 TTCTGCGTCTGGGCCGTG 62.680 66.667 0.00 0.00 0.00 4.94
1483 1560 1.055551 AACCTGGTAACCCCACGTCA 61.056 55.000 0.00 0.00 38.72 4.35
1546 1626 5.660629 TTGTTTATCGAGACGCTTGAAAA 57.339 34.783 0.00 2.53 0.00 2.29
1558 1638 4.874970 ACGCTTGAAAATCTCTGCAAAAT 58.125 34.783 0.00 0.00 0.00 1.82
1797 1889 0.454600 CCTGCCAATCATGTGCAGAC 59.545 55.000 21.90 0.78 45.73 3.51
1912 2044 5.877012 CAGAACTCATACCAGTTGTAGCAAT 59.123 40.000 0.00 0.00 36.71 3.56
1913 2045 7.041721 CAGAACTCATACCAGTTGTAGCAATA 58.958 38.462 0.00 0.00 36.71 1.90
1919 2051 9.764363 CTCATACCAGTTGTAGCAATAGAATTA 57.236 33.333 0.00 0.00 31.61 1.40
2047 2185 3.059461 GGTCTTCGTGAAATTGTTGCGTA 60.059 43.478 0.00 0.00 0.00 4.42
2050 2188 1.192757 TCGTGAAATTGTTGCGTACCG 59.807 47.619 0.00 0.00 0.00 4.02
2074 2215 8.643752 CCGAATATGGTTAAAAACATGTGAAAC 58.356 33.333 0.00 1.81 37.35 2.78
2177 2318 5.872070 GTCTTTTGTGAGAGAGAATGGGTAG 59.128 44.000 0.00 0.00 0.00 3.18
2278 2422 5.581085 GTGCCTACTGACCATTAAACTACTG 59.419 44.000 0.00 0.00 0.00 2.74
2308 2459 5.831103 ACCCTGTGATGTCATCCTTAAAAT 58.169 37.500 10.36 0.00 0.00 1.82
2312 2463 7.503566 CCCTGTGATGTCATCCTTAAAATATGT 59.496 37.037 10.36 0.00 0.00 2.29
2341 2492 6.485830 TTCCAATCAATAAAACAACCCACA 57.514 33.333 0.00 0.00 0.00 4.17
2407 2621 4.667262 TCAGTTATTATTTTTGCGCGCAT 58.333 34.783 36.83 22.84 0.00 4.73
2408 2622 4.732923 TCAGTTATTATTTTTGCGCGCATC 59.267 37.500 36.83 13.98 0.00 3.91
2411 2625 1.623359 TTATTTTTGCGCGCATCACC 58.377 45.000 36.83 2.77 0.00 4.02
2416 2630 1.842698 TTTGCGCGCATCACCGTTTA 61.843 50.000 36.83 14.18 0.00 2.01
2418 2632 1.367665 GCGCGCATCACCGTTTATC 60.368 57.895 29.10 0.00 0.00 1.75
2419 2633 1.275657 CGCGCATCACCGTTTATCC 59.724 57.895 8.75 0.00 0.00 2.59
2421 2635 1.931551 CGCATCACCGTTTATCCCG 59.068 57.895 0.00 0.00 0.00 5.14
2466 2680 6.437162 CCCTTCAAATTTATCCTGAAACTCCA 59.563 38.462 0.00 0.00 0.00 3.86
2504 2718 3.026694 GCAAAATAATCTGACCCCAGCT 58.973 45.455 0.00 0.00 40.20 4.24
2513 2727 2.846206 TCTGACCCCAGCTATGATTGTT 59.154 45.455 0.00 0.00 40.20 2.83
2515 2729 4.019174 CTGACCCCAGCTATGATTGTTTT 58.981 43.478 0.00 0.00 33.07 2.43
2516 2730 3.763360 TGACCCCAGCTATGATTGTTTTG 59.237 43.478 0.00 0.00 0.00 2.44
2517 2731 3.763897 GACCCCAGCTATGATTGTTTTGT 59.236 43.478 0.00 0.00 0.00 2.83
2518 2732 4.159557 ACCCCAGCTATGATTGTTTTGTT 58.840 39.130 0.00 0.00 0.00 2.83
2519 2733 4.592778 ACCCCAGCTATGATTGTTTTGTTT 59.407 37.500 0.00 0.00 0.00 2.83
2520 2734 5.777732 ACCCCAGCTATGATTGTTTTGTTTA 59.222 36.000 0.00 0.00 0.00 2.01
2662 2876 0.249398 GTGAGCTCCACGGTACCAAT 59.751 55.000 13.54 0.00 35.86 3.16
2664 2878 0.535335 GAGCTCCACGGTACCAATCA 59.465 55.000 13.54 0.00 0.00 2.57
2679 2893 2.430956 CAATCACGGCGATTCTTTTCG 58.569 47.619 16.62 0.00 42.70 3.46
2681 2895 1.065358 TCACGGCGATTCTTTTCGTC 58.935 50.000 16.62 0.00 41.16 4.20
2683 2897 1.017701 ACGGCGATTCTTTTCGTCCC 61.018 55.000 16.62 0.00 40.53 4.46
2792 3006 0.184933 CCCCCTTCACCAAGAACACA 59.815 55.000 0.00 0.00 31.61 3.72
2870 3084 3.077359 CAACGCCTTCTTCCAGAAATCT 58.923 45.455 0.00 0.00 33.19 2.40
2998 3213 2.231964 TCCTTTTGGTGATGATTGCAGC 59.768 45.455 0.00 0.00 41.38 5.25
3207 3459 5.662211 TTGTTCTGAAGTTACTTTACGGC 57.338 39.130 0.00 0.00 0.00 5.68
3251 3503 9.772605 AAGTATGATCAAGAGAGATCCTGATAT 57.227 33.333 0.00 0.00 42.95 1.63
3320 3572 3.706086 TGATGCTGAGCTATCACCACTTA 59.294 43.478 5.83 0.00 0.00 2.24
3343 3595 9.525826 CTTATAAAGAGCAAGGGGAAATATCAT 57.474 33.333 0.00 0.00 0.00 2.45
3348 3600 7.588497 AGAGCAAGGGGAAATATCATTAAAC 57.412 36.000 0.00 0.00 0.00 2.01
3416 3668 5.045066 AGGGACACTTTTAGGAAATACCCTC 60.045 44.000 0.00 0.00 39.59 4.30
3763 4016 2.509336 CGCCATGACTCACCGTCC 60.509 66.667 0.00 0.00 42.13 4.79
3776 4029 2.472059 CCGTCCATTCGGCACATGG 61.472 63.158 5.71 5.71 43.96 3.66
3873 4128 7.342581 AGAAAATTCTCAACCCCTCTTATCTC 58.657 38.462 0.00 0.00 29.94 2.75
4035 4290 5.902613 TCTGGTAAGCCAAGAAAATGATG 57.097 39.130 0.00 0.00 45.51 3.07
4050 4305 8.345724 AGAAAATGATGAGCAGTTGAAGTTAT 57.654 30.769 0.00 0.00 34.60 1.89
4093 4348 7.201145 ACTAGTATTTATCAGCTACAACACGG 58.799 38.462 0.00 0.00 0.00 4.94
4117 4372 3.981071 TGTTTCAGGTACCTGGATCAG 57.019 47.619 35.94 14.54 43.75 2.90
4261 4516 4.939439 GGCATGCCTGAATTTCTTGAAAAT 59.061 37.500 29.98 0.00 0.00 1.82
4264 4519 6.799925 GCATGCCTGAATTTCTTGAAAATTTG 59.200 34.615 6.36 0.00 30.68 2.32
4265 4520 7.520937 GCATGCCTGAATTTCTTGAAAATTTGT 60.521 33.333 6.36 0.00 30.68 2.83
4272 4527 6.998968 ATTTCTTGAAAATTTGTGCCACAA 57.001 29.167 6.08 6.08 36.11 3.33
4277 4532 4.935702 TGAAAATTTGTGCCACAAGAGAG 58.064 39.130 10.58 0.00 39.53 3.20
4279 4534 5.302568 TGAAAATTTGTGCCACAAGAGAGAT 59.697 36.000 10.58 0.00 39.53 2.75
4438 4731 2.446435 TGCAACTTATTCCTGCCTTCC 58.554 47.619 0.00 0.00 35.13 3.46
4646 4941 9.866798 AAATTTTATCTCTCTGAATTTTCCAGC 57.133 29.630 0.00 0.00 28.54 4.85
4717 5012 0.324368 TCTATGTGACCAGCGAGGGT 60.324 55.000 0.00 0.00 46.02 4.34
4720 5015 4.314440 GTGACCAGCGAGGGTGCA 62.314 66.667 2.90 0.00 42.53 4.57
4730 5025 1.754745 GAGGGTGCACAAGAGGTCA 59.245 57.895 20.43 0.00 0.00 4.02
4743 5038 4.388499 GGTCACGCATCCCCACGT 62.388 66.667 0.00 0.00 44.75 4.49
4758 5053 2.244651 ACGTCGCAAAGGAGCACAC 61.245 57.895 0.00 0.00 0.00 3.82
4771 5066 0.251341 AGCACACAAGGTCCATTCCC 60.251 55.000 0.00 0.00 0.00 3.97
4801 5096 0.183492 AAACAGCTGGGCTCACAAGA 59.817 50.000 19.93 0.00 36.40 3.02
4996 5291 0.743097 CAGGCTTTTATGCTCCTGCC 59.257 55.000 0.00 0.00 39.53 4.85
5052 5347 7.599998 GGAAATTATTCCGCTATCGTAGGTTAA 59.400 37.037 0.00 0.00 45.44 2.01
5205 5501 7.147958 TGAAAGGAAATGAAAGGGGAAAATT 57.852 32.000 0.00 0.00 0.00 1.82
5280 5578 0.108804 ACACCGAACACATAGCTCCG 60.109 55.000 0.00 0.00 0.00 4.63
5307 5605 5.890334 TGTTACTAATGCAGCATTTAAGCC 58.110 37.500 25.54 11.80 35.54 4.35
5352 5816 7.745620 AAATTAAAACTGTGCAGTAGTAGCT 57.254 32.000 5.18 0.00 41.58 3.32
5361 5825 5.441500 TGTGCAGTAGTAGCTAGATTCTCT 58.558 41.667 0.00 0.00 0.00 3.10
5363 5827 5.529430 GTGCAGTAGTAGCTAGATTCTCTCA 59.471 44.000 0.00 0.00 0.00 3.27
5408 5874 4.666512 AGTGCAGATCAGGTAAAACCATT 58.333 39.130 0.00 0.00 41.95 3.16
5462 5928 1.638133 CTGAAGATCGACCTGCAGTG 58.362 55.000 6.62 6.81 35.53 3.66
5465 5931 0.247736 AAGATCGACCTGCAGTGTCC 59.752 55.000 22.03 12.75 0.00 4.02
5501 5967 2.033299 CCACGTGCAGAACATGAAAAGT 59.967 45.455 10.91 0.00 38.75 2.66
5649 6124 2.240493 AGCAGGTACAGTTCACACAC 57.760 50.000 0.00 0.00 0.00 3.82
5844 6350 2.426738 CACACACAAGGAGAAGGCAAAA 59.573 45.455 0.00 0.00 0.00 2.44
5874 6380 8.915036 AGAAAATTACAGGACTATCGTAGATGT 58.085 33.333 0.01 0.00 45.12 3.06
5910 6416 6.867662 ATCTGAAAACAGAGTACTTGTTGG 57.132 37.500 18.10 11.77 34.35 3.77
5965 6509 7.524294 TGAAATCTTGAAAAACAGAAAGCAC 57.476 32.000 0.00 0.00 0.00 4.40
5985 6529 3.127548 CACTCTACATGTGCATGGGAAAC 59.872 47.826 9.11 0.00 42.91 2.78
6023 6567 5.648247 ACTAACAGTTCCTAGTGGAGGTTA 58.352 41.667 0.00 0.00 46.76 2.85
6035 6579 3.073062 AGTGGAGGTTAAATCAGCACAGT 59.927 43.478 0.00 0.00 0.00 3.55
6053 6597 6.428159 AGCACAGTTACCTGAAAAATAGTCAG 59.572 38.462 0.00 0.00 41.50 3.51
6094 6638 7.338800 AGGATGCTTATAACTGAAACAATGG 57.661 36.000 0.00 0.00 0.00 3.16
6105 6649 5.804639 ACTGAAACAATGGCATACTACTCA 58.195 37.500 0.00 0.00 0.00 3.41
6126 6670 7.063593 ACTCAGCATCTCCTTAGACAGTTATA 58.936 38.462 0.00 0.00 33.57 0.98
6157 6704 5.754782 AGATCATGTACCACAATAGCCAAA 58.245 37.500 0.00 0.00 0.00 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
47 49 6.057627 ACACGGTATAGTAATCGAGTTGAG 57.942 41.667 0.00 0.00 0.00 3.02
67 69 9.485206 TTGAACTCTATGGTAGAAACTTTACAC 57.515 33.333 0.00 0.00 33.75 2.90
94 96 2.525368 GCCATTGGGGTCTAAAACAGT 58.475 47.619 4.53 0.00 39.65 3.55
97 99 1.931635 TGGCCATTGGGGTCTAAAAC 58.068 50.000 0.00 0.00 43.75 2.43
210 212 7.176165 GCTAGGTTTTAATAACTTTCCCTGTGT 59.824 37.037 0.00 0.00 0.00 3.72
261 263 5.114764 TGCTCATTCATTGGATAAGGACA 57.885 39.130 0.00 0.00 0.00 4.02
355 357 5.237344 CCTGCATAGCTAGTTGGTTTATGAC 59.763 44.000 0.00 0.00 0.00 3.06
365 367 2.102252 GCTGACTCCTGCATAGCTAGTT 59.898 50.000 0.00 0.00 37.23 2.24
399 401 1.286305 GGGGGTTGCTTATGGGAGGA 61.286 60.000 0.00 0.00 0.00 3.71
417 428 2.202395 CCTGTTGTTGGTGCCTGGG 61.202 63.158 0.00 0.00 0.00 4.45
481 494 7.151976 GGCCTGTTACAAATGAAAAAGTATGT 58.848 34.615 0.00 0.00 0.00 2.29
484 497 5.764131 CGGCCTGTTACAAATGAAAAAGTA 58.236 37.500 0.00 0.00 0.00 2.24
487 500 3.181475 TGCGGCCTGTTACAAATGAAAAA 60.181 39.130 0.00 0.00 0.00 1.94
505 518 4.108699 ACCAAAACATGAACATATGCGG 57.891 40.909 1.58 0.00 0.00 5.69
572 586 9.549078 GGATTTACCACCAAAAACTCATTTTTA 57.451 29.630 0.00 0.00 40.82 1.52
580 594 6.269077 CCCTAAAGGATTTACCACCAAAAACT 59.731 38.462 0.00 0.00 40.09 2.66
600 614 3.843619 TCATTCTCACACATGGTCCCTAA 59.156 43.478 0.00 0.00 0.00 2.69
603 617 2.237143 TCTCATTCTCACACATGGTCCC 59.763 50.000 0.00 0.00 0.00 4.46
616 630 6.662234 TCTTTGGAAAATGCTCATCTCATTCT 59.338 34.615 0.00 0.00 33.41 2.40
618 632 6.845758 TCTTTGGAAAATGCTCATCTCATT 57.154 33.333 0.00 0.00 35.83 2.57
651 666 1.010419 ATAACCGGAACACGCACGAC 61.010 55.000 9.46 0.00 42.52 4.34
654 669 1.062002 CATGATAACCGGAACACGCAC 59.938 52.381 9.46 0.00 42.52 5.34
656 671 0.655733 CCATGATAACCGGAACACGC 59.344 55.000 9.46 0.00 42.52 5.34
716 731 3.249080 CCAAACAAAAGTACACGGTCGAT 59.751 43.478 0.00 0.00 0.00 3.59
720 735 3.506844 ACAACCAAACAAAAGTACACGGT 59.493 39.130 0.00 0.00 0.00 4.83
758 773 4.965814 TCTCACTCTGAATTTTGCTCTGT 58.034 39.130 0.00 0.00 0.00 3.41
765 780 7.463961 AAATGCTCATCTCACTCTGAATTTT 57.536 32.000 0.00 0.00 0.00 1.82
776 791 6.266103 AGTTTCTTTGGAAAATGCTCATCTCA 59.734 34.615 0.00 0.00 42.22 3.27
801 824 5.055812 GGTTTGTTTGGAAAATGCTCATCA 58.944 37.500 0.00 0.00 0.00 3.07
802 825 5.055812 TGGTTTGTTTGGAAAATGCTCATC 58.944 37.500 0.00 0.00 0.00 2.92
803 826 5.033589 TGGTTTGTTTGGAAAATGCTCAT 57.966 34.783 0.00 0.00 0.00 2.90
804 827 4.478206 TGGTTTGTTTGGAAAATGCTCA 57.522 36.364 0.00 0.00 0.00 4.26
805 828 5.809719 TTTGGTTTGTTTGGAAAATGCTC 57.190 34.783 0.00 0.00 0.00 4.26
806 829 5.651576 ACATTTGGTTTGTTTGGAAAATGCT 59.348 32.000 5.98 0.00 38.14 3.79
807 830 5.889219 ACATTTGGTTTGTTTGGAAAATGC 58.111 33.333 5.98 0.00 38.14 3.56
808 831 9.846248 TTTTACATTTGGTTTGTTTGGAAAATG 57.154 25.926 0.00 0.00 39.65 2.32
810 833 9.067986 ACTTTTACATTTGGTTTGTTTGGAAAA 57.932 25.926 0.00 0.00 0.00 2.29
811 834 8.622948 ACTTTTACATTTGGTTTGTTTGGAAA 57.377 26.923 0.00 0.00 0.00 3.13
812 835 9.152595 GTACTTTTACATTTGGTTTGTTTGGAA 57.847 29.630 0.00 0.00 0.00 3.53
813 836 8.311836 TGTACTTTTACATTTGGTTTGTTTGGA 58.688 29.630 0.00 0.00 32.98 3.53
814 837 8.480643 TGTACTTTTACATTTGGTTTGTTTGG 57.519 30.769 0.00 0.00 32.98 3.28
817 840 9.157104 CCTTTGTACTTTTACATTTGGTTTGTT 57.843 29.630 0.00 0.00 38.05 2.83
818 841 7.766738 CCCTTTGTACTTTTACATTTGGTTTGT 59.233 33.333 0.00 0.00 38.05 2.83
819 842 7.225734 CCCCTTTGTACTTTTACATTTGGTTTG 59.774 37.037 0.00 0.00 38.05 2.93
820 843 7.276658 CCCCTTTGTACTTTTACATTTGGTTT 58.723 34.615 0.00 0.00 38.05 3.27
821 844 6.686885 GCCCCTTTGTACTTTTACATTTGGTT 60.687 38.462 0.00 0.00 38.05 3.67
822 845 5.221561 GCCCCTTTGTACTTTTACATTTGGT 60.222 40.000 0.00 0.00 38.05 3.67
823 846 5.221541 TGCCCCTTTGTACTTTTACATTTGG 60.222 40.000 0.00 0.00 38.05 3.28
836 859 5.103728 TGGAAATAGATGATGCCCCTTTGTA 60.104 40.000 0.00 0.00 0.00 2.41
875 898 6.962902 TGGGAATTTAGGGGACAACAATATTT 59.037 34.615 0.00 0.00 0.00 1.40
880 905 3.141272 ACTGGGAATTTAGGGGACAACAA 59.859 43.478 0.00 0.00 0.00 2.83
896 922 1.583556 AGCATACCATGTCACTGGGA 58.416 50.000 0.00 0.00 40.85 4.37
901 927 4.764172 AGAGAGAAAGCATACCATGTCAC 58.236 43.478 0.00 0.00 0.00 3.67
1120 1164 2.659016 CCGCTCTTGCAGGTGAGA 59.341 61.111 14.79 2.17 39.64 3.27
1183 1227 0.241749 CATGCCGAGCAAGCAAAGAA 59.758 50.000 2.68 0.00 44.83 2.52
1184 1228 1.588824 CCATGCCGAGCAAGCAAAGA 61.589 55.000 2.68 0.00 44.83 2.52
1185 1229 1.153901 CCATGCCGAGCAAGCAAAG 60.154 57.895 2.68 0.00 44.83 2.77
1186 1230 2.964174 CCATGCCGAGCAAGCAAA 59.036 55.556 2.68 0.00 44.83 3.68
1187 1231 3.751246 GCCATGCCGAGCAAGCAA 61.751 61.111 14.80 0.00 44.83 3.91
1483 1560 2.103263 GACAGAAACAGAGAGGGTGTGT 59.897 50.000 0.00 0.00 32.91 3.72
1558 1638 9.651913 AGAGCTCAGACAAACAAATTTTTAAAA 57.348 25.926 17.77 0.00 0.00 1.52
1576 1656 6.621316 AAAGAATTCATATGCAGAGCTCAG 57.379 37.500 17.77 9.50 0.00 3.35
1732 1824 4.035558 CAGAATTGATTATGGGTCCGTGTG 59.964 45.833 0.00 0.00 0.00 3.82
1868 2000 9.525409 AGTTCTGAAATTTTGTCATTCTTCTTG 57.475 29.630 0.00 0.00 0.00 3.02
1869 2001 9.741647 GAGTTCTGAAATTTTGTCATTCTTCTT 57.258 29.630 0.00 0.00 0.00 2.52
1929 2061 9.223099 GCCAAAAGTGACTAAATTACTTACCTA 57.777 33.333 0.00 0.00 33.82 3.08
1943 2075 2.203153 ACGGCGCCAAAAGTGACT 60.203 55.556 28.98 0.00 0.00 3.41
2047 2185 7.455641 TCACATGTTTTTAACCATATTCGGT 57.544 32.000 0.00 0.00 42.71 4.69
2278 2422 1.003118 TGACATCACAGGGTTAGTGGC 59.997 52.381 0.00 0.00 37.58 5.01
2308 2459 9.716531 TGTTTTATTGATTGGAATGCAAACATA 57.283 25.926 0.00 0.00 34.62 2.29
2312 2463 7.040823 GGGTTGTTTTATTGATTGGAATGCAAA 60.041 33.333 0.00 0.00 0.00 3.68
2315 2466 5.936956 TGGGTTGTTTTATTGATTGGAATGC 59.063 36.000 0.00 0.00 0.00 3.56
2377 2528 9.124807 GCGCAAAAATAATAACTGAGTTTAGTT 57.875 29.630 1.97 0.00 43.03 2.24
2378 2529 7.480542 CGCGCAAAAATAATAACTGAGTTTAGT 59.519 33.333 8.75 0.00 0.00 2.24
2411 2625 4.156373 ACACAAATTAACCCGGGATAAACG 59.844 41.667 32.02 19.59 0.00 3.60
2416 2630 6.127281 GGATTTTACACAAATTAACCCGGGAT 60.127 38.462 32.02 20.40 0.00 3.85
2418 2632 5.412640 GGATTTTACACAAATTAACCCGGG 58.587 41.667 22.25 22.25 0.00 5.73
2419 2633 5.412640 GGGATTTTACACAAATTAACCCGG 58.587 41.667 0.00 0.00 0.00 5.73
2421 2635 6.614694 AGGGGATTTTACACAAATTAACCC 57.385 37.500 0.00 0.00 31.09 4.11
2477 2691 4.162131 GGGGTCAGATTATTTTGCCATGTT 59.838 41.667 0.00 0.00 0.00 2.71
2504 2718 6.071616 GCAGGGAGGTAAACAAAACAATCATA 60.072 38.462 0.00 0.00 0.00 2.15
2513 2727 1.777878 TCCTGCAGGGAGGTAAACAAA 59.222 47.619 32.23 5.52 39.58 2.83
2515 2729 0.690762 GTCCTGCAGGGAGGTAAACA 59.309 55.000 32.23 6.93 46.10 2.83
2516 2730 0.035343 GGTCCTGCAGGGAGGTAAAC 60.035 60.000 32.23 20.07 46.10 2.01
2517 2731 0.178873 AGGTCCTGCAGGGAGGTAAA 60.179 55.000 32.23 8.58 46.10 2.01
2518 2732 0.909610 CAGGTCCTGCAGGGAGGTAA 60.910 60.000 32.23 9.40 46.10 2.85
2519 2733 1.306141 CAGGTCCTGCAGGGAGGTA 60.306 63.158 32.23 10.23 46.10 3.08
2520 2734 2.608988 CAGGTCCTGCAGGGAGGT 60.609 66.667 32.23 12.18 46.10 3.85
2662 2876 1.065358 GACGAAAAGAATCGCCGTGA 58.935 50.000 0.00 0.00 46.51 4.35
2664 2878 1.017701 GGGACGAAAAGAATCGCCGT 61.018 55.000 0.00 0.00 46.51 5.68
2679 2893 2.270527 GGAGAAGGCTGCAGGGAC 59.729 66.667 17.12 0.00 31.98 4.46
2681 2895 4.120755 GGGGAGAAGGCTGCAGGG 62.121 72.222 17.12 0.00 33.56 4.45
2683 2897 1.970352 GAGAGGGGAGAAGGCTGCAG 61.970 65.000 10.11 10.11 33.56 4.41
2792 3006 1.451387 GAACCCGAACATGGCCGAT 60.451 57.895 10.03 0.00 0.00 4.18
2870 3084 5.881443 ACCGATTACGATGAAAAATTACCCA 59.119 36.000 0.00 0.00 42.66 4.51
2884 3098 2.166254 GAGTTGGGGTTACCGATTACGA 59.834 50.000 0.00 0.00 44.64 3.43
2944 3159 8.745837 GCCAATAAAGTCACATTATCATTTTCG 58.254 33.333 0.00 0.00 0.00 3.46
2998 3213 0.109597 GCCCAAAGACAATCTGTGCG 60.110 55.000 0.00 0.00 30.26 5.34
3207 3459 8.648557 TCATACTTATCAGGATTTCTTTCGTG 57.351 34.615 0.00 0.00 33.79 4.35
3251 3503 6.071108 TGTCTGGGATTTCTTTTGTTCAAACA 60.071 34.615 0.00 0.00 37.08 2.83
3314 3566 4.503714 TCCCCTTGCTCTTTATAAGTGG 57.496 45.455 0.00 0.00 0.00 4.00
3320 3572 9.881773 TTAATGATATTTCCCCTTGCTCTTTAT 57.118 29.630 0.00 0.00 0.00 1.40
3343 3595 3.674997 AGCAAAGGAGAGCATCGTTTAA 58.325 40.909 8.66 0.00 42.58 1.52
3348 3600 3.058016 TGAAAAAGCAAAGGAGAGCATCG 60.058 43.478 0.00 0.00 42.67 3.84
3416 3668 5.581874 AGCAACATTTTGGAAAGACAAGTTG 59.418 36.000 0.00 0.00 37.22 3.16
3763 4016 0.392863 TCCAGTCCATGTGCCGAATG 60.393 55.000 0.00 0.00 0.00 2.67
3776 4029 1.541588 GCAGGTTCCATGTTTCCAGTC 59.458 52.381 0.00 0.00 0.00 3.51
3870 4125 5.700722 ACGTGCTTACCATATTATCGAGA 57.299 39.130 0.00 0.00 0.00 4.04
3873 4128 5.388475 GCTGAACGTGCTTACCATATTATCG 60.388 44.000 0.00 0.00 0.00 2.92
4069 4324 7.167635 CACCGTGTTGTAGCTGATAAATACTAG 59.832 40.741 0.00 0.00 0.00 2.57
4082 4337 2.546368 TGAAACATCACCGTGTTGTAGC 59.454 45.455 14.21 10.32 41.22 3.58
4084 4339 3.135225 CCTGAAACATCACCGTGTTGTA 58.865 45.455 14.21 0.78 41.22 2.41
4087 4342 2.341846 ACCTGAAACATCACCGTGTT 57.658 45.000 0.00 0.00 43.78 3.32
4091 4346 2.346803 CAGGTACCTGAAACATCACCG 58.653 52.381 34.54 4.52 46.30 4.94
4093 4348 3.695830 TCCAGGTACCTGAAACATCAC 57.304 47.619 38.35 0.00 46.30 3.06
4235 4490 2.226962 AGAAATTCAGGCATGCCAGT 57.773 45.000 37.18 16.60 38.92 4.00
4261 4516 7.611467 ACATTATAATCTCTCTTGTGGCACAAA 59.389 33.333 30.66 17.95 44.16 2.83
4264 4519 7.559590 AACATTATAATCTCTCTTGTGGCAC 57.440 36.000 11.55 11.55 0.00 5.01
4265 4520 8.579850 AAAACATTATAATCTCTCTTGTGGCA 57.420 30.769 0.00 0.00 0.00 4.92
4296 4551 9.530633 AGTGTAACGATTATGAAGTTATCCTTC 57.469 33.333 0.00 0.00 45.96 3.46
4310 4565 9.472361 GCCAGATTCTAATAAGTGTAACGATTA 57.528 33.333 0.00 0.00 45.86 1.75
4315 4608 6.821665 TGGTGCCAGATTCTAATAAGTGTAAC 59.178 38.462 0.00 0.00 0.00 2.50
4332 4625 3.689649 GGAAACTAAGTATGTGGTGCCAG 59.310 47.826 0.00 0.00 0.00 4.85
4717 5012 0.950555 GATGCGTGACCTCTTGTGCA 60.951 55.000 0.00 0.00 36.69 4.57
4720 5015 1.296715 GGGATGCGTGACCTCTTGT 59.703 57.895 0.00 0.00 0.00 3.16
4743 5038 1.165907 CCTTGTGTGCTCCTTTGCGA 61.166 55.000 0.00 0.00 35.36 5.10
4758 5053 1.467920 GAGCTTGGGAATGGACCTTG 58.532 55.000 0.00 0.00 0.00 3.61
4771 5066 2.174349 GCTGTTTCGCCGAGCTTG 59.826 61.111 0.00 0.00 0.00 4.01
4801 5096 1.279271 GCTGTGAGGTGGTATTCCTGT 59.721 52.381 0.00 0.00 35.20 4.00
4996 5291 7.687941 AAACCAATCAACAATCTACCTACAG 57.312 36.000 0.00 0.00 0.00 2.74
5039 5334 5.507650 GGCACTTCCTCTTAACCTACGATAG 60.508 48.000 0.00 0.00 46.19 2.08
5052 5347 3.322466 CCCACCGGCACTTCCTCT 61.322 66.667 0.00 0.00 0.00 3.69
5205 5501 9.653287 CAGTGGTATGAACAGAAGTTAGAAATA 57.347 33.333 0.00 0.00 38.30 1.40
5213 5509 4.955811 TGACAGTGGTATGAACAGAAGT 57.044 40.909 0.00 0.00 0.00 3.01
5214 5510 6.091849 CAGAATGACAGTGGTATGAACAGAAG 59.908 42.308 0.00 0.00 39.69 2.85
5228 5526 8.225603 AGTGTCAATAAAAACAGAATGACAGT 57.774 30.769 6.65 7.33 45.33 3.55
5280 5578 8.162245 GCTTAAATGCTGCATTAGTAACAAAAC 58.838 33.333 26.48 4.35 32.43 2.43
5392 5858 7.148086 TGTCAATAGCAATGGTTTTACCTGATC 60.148 37.037 0.00 0.00 39.58 2.92
5408 5874 5.047660 AGCCGGTTAATTTTTGTCAATAGCA 60.048 36.000 1.90 0.00 0.00 3.49
5844 6350 6.163135 CGATAGTCCTGTAATTTTCTCCCT 57.837 41.667 0.00 0.00 0.00 4.20
5910 6416 7.067737 AGTCTCTTATCTACTCTGCCTGTTAAC 59.932 40.741 0.00 0.00 0.00 2.01
5965 6509 3.346315 TGTTTCCCATGCACATGTAGAG 58.654 45.455 9.63 0.00 37.11 2.43
6012 6556 4.286032 ACTGTGCTGATTTAACCTCCACTA 59.714 41.667 0.00 0.00 0.00 2.74
6035 6579 6.480763 TCATGGCTGACTATTTTTCAGGTAA 58.519 36.000 0.00 0.00 40.84 2.85
6053 6597 5.917541 CATCCTTGCAAATTTATCATGGC 57.082 39.130 0.00 4.89 0.00 4.40
6091 6635 3.260380 GGAGATGCTGAGTAGTATGCCAT 59.740 47.826 0.00 0.00 28.70 4.40
6094 6638 4.599047 AAGGAGATGCTGAGTAGTATGC 57.401 45.455 0.00 0.00 28.70 3.14
6105 6649 8.441572 TCTACTATAACTGTCTAAGGAGATGCT 58.558 37.037 0.00 0.00 33.14 3.79
6126 6670 7.609097 ATTGTGGTACATGATCTCATCTACT 57.391 36.000 0.00 0.00 44.52 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.