Multiple sequence alignment - TraesCS6D01G349800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G349800 chr6D 100.000 2652 0 0 1 2652 447760108 447762759 0.000000e+00 4898.0
1 TraesCS6D01G349800 chr6D 82.549 871 102 30 993 1841 447213777 447212935 0.000000e+00 721.0
2 TraesCS6D01G349800 chr6D 88.604 351 28 5 1008 1346 447278841 447278491 1.470000e-112 416.0
3 TraesCS6D01G349800 chr6D 85.859 297 29 9 703 994 447214116 447213828 1.190000e-78 303.0
4 TraesCS6D01G349800 chr6D 78.462 520 62 23 1038 1546 446948445 446948925 7.180000e-76 294.0
5 TraesCS6D01G349800 chr6D 86.806 144 12 5 1 138 98020681 98020539 1.270000e-33 154.0
6 TraesCS6D01G349800 chr6D 82.184 174 14 6 1998 2158 447738795 447738964 1.660000e-27 134.0
7 TraesCS6D01G349800 chr6D 82.222 135 15 6 2015 2144 446884108 446884238 1.000000e-19 108.0
8 TraesCS6D01G349800 chr6D 91.304 69 3 1 606 671 447214190 447214122 1.010000e-14 91.6
9 TraesCS6D01G349800 chr6A 82.927 1148 128 28 993 2106 593929921 593928808 0.000000e+00 972.0
10 TraesCS6D01G349800 chr6A 87.360 356 30 7 993 1337 594365703 594366054 6.880000e-106 394.0
11 TraesCS6D01G349800 chr6A 83.642 324 24 15 672 991 593930275 593929977 7.230000e-71 278.0
12 TraesCS6D01G349800 chr6A 78.372 430 66 19 1107 1530 593792359 593792767 1.220000e-63 254.0
13 TraesCS6D01G349800 chr6A 83.217 286 25 12 142 419 593931056 593930786 9.490000e-60 241.0
14 TraesCS6D01G349800 chr6A 84.483 174 20 6 627 797 594364925 594365094 5.870000e-37 165.0
15 TraesCS6D01G349800 chr6A 81.395 129 20 3 2015 2141 593734680 593734806 4.670000e-18 102.0
16 TraesCS6D01G349800 chr6B 82.439 1025 108 40 993 1978 677045600 677044609 0.000000e+00 830.0
17 TraesCS6D01G349800 chr6B 85.007 687 82 12 999 1680 676492659 676491989 0.000000e+00 678.0
18 TraesCS6D01G349800 chr6B 78.289 1239 136 56 1207 2391 676730540 676729381 0.000000e+00 675.0
19 TraesCS6D01G349800 chr6B 83.890 509 65 12 983 1477 676538315 676537810 1.110000e-128 470.0
20 TraesCS6D01G349800 chr6B 89.552 335 29 3 1011 1343 676865818 676865488 1.140000e-113 420.0
21 TraesCS6D01G349800 chr6B 90.432 324 24 4 993 1316 677088305 677087989 1.140000e-113 420.0
22 TraesCS6D01G349800 chr6B 88.889 342 27 7 993 1331 678542655 678542988 6.830000e-111 411.0
23 TraesCS6D01G349800 chr6B 87.311 331 32 8 1021 1343 678174729 678175057 1.160000e-98 370.0
24 TraesCS6D01G349800 chr6B 84.424 321 28 8 1855 2166 676536753 676536446 2.000000e-76 296.0
25 TraesCS6D01G349800 chr6B 80.178 449 46 18 1753 2167 677087631 677087192 2.000000e-76 296.0
26 TraesCS6D01G349800 chr6B 80.178 449 45 20 1753 2167 677777832 677777394 2.000000e-76 296.0
27 TraesCS6D01G349800 chr6B 80.178 449 46 19 1753 2167 677910113 677909674 2.000000e-76 296.0
28 TraesCS6D01G349800 chr6B 78.088 502 66 27 1038 1530 675568481 675568015 7.230000e-71 278.0
29 TraesCS6D01G349800 chr6B 80.412 388 44 14 1802 2167 676865054 676864677 1.570000e-67 267.0
30 TraesCS6D01G349800 chr6B 79.744 390 47 20 1148 1530 676136484 676136848 1.220000e-63 254.0
31 TraesCS6D01G349800 chr6B 79.897 388 45 14 1753 2130 676491961 676491597 1.220000e-63 254.0
32 TraesCS6D01G349800 chr6B 79.747 395 28 22 161 538 676499115 676498756 3.410000e-59 239.0
33 TraesCS6D01G349800 chr6B 78.708 418 40 21 138 541 678540155 678540537 1.590000e-57 233.0
34 TraesCS6D01G349800 chr6B 79.573 328 35 14 1855 2167 678091817 678091507 3.460000e-49 206.0
35 TraesCS6D01G349800 chr6B 83.265 245 17 14 628 872 676372597 676372377 1.240000e-48 204.0
36 TraesCS6D01G349800 chr6B 79.697 330 28 13 1468 1792 676537350 676537055 4.480000e-48 202.0
37 TraesCS6D01G349800 chr6B 81.008 258 23 10 1901 2141 676037095 676037343 5.830000e-42 182.0
38 TraesCS6D01G349800 chr6B 82.843 204 23 5 144 346 676373376 676373184 3.510000e-39 172.0
39 TraesCS6D01G349800 chr6B 85.276 163 10 6 713 875 676493349 676493201 3.530000e-34 156.0
40 TraesCS6D01G349800 chr6B 95.588 68 3 0 601 668 678542188 678542255 2.790000e-20 110.0
41 TraesCS6D01G349800 chr5A 78.876 587 72 34 1009 1590 472469393 472469932 1.510000e-92 350.0
42 TraesCS6D01G349800 chr5A 87.143 140 16 2 3 140 305742777 305742916 9.830000e-35 158.0
43 TraesCS6D01G349800 chr3A 90.210 143 10 3 1 140 26193683 26193824 1.620000e-42 183.0
44 TraesCS6D01G349800 chr1D 87.671 146 15 2 1 143 414928131 414928276 1.630000e-37 167.0
45 TraesCS6D01G349800 chr3D 88.406 138 14 1 3 138 325742655 325742792 5.870000e-37 165.0
46 TraesCS6D01G349800 chrUn 87.857 140 16 1 1 140 36485733 36485595 2.110000e-36 163.0
47 TraesCS6D01G349800 chr7D 87.413 143 14 3 1 140 530758412 530758553 7.600000e-36 161.0
48 TraesCS6D01G349800 chr7D 87.324 142 16 1 1 140 638033230 638033089 7.600000e-36 161.0
49 TraesCS6D01G349800 chr5D 87.143 140 16 1 1 138 554510351 554510490 9.830000e-35 158.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G349800 chr6D 447760108 447762759 2651 False 4898.000000 4898 100.000000 1 2652 1 chr6D.!!$F4 2651
1 TraesCS6D01G349800 chr6D 447212935 447214190 1255 True 371.866667 721 86.570667 606 1841 3 chr6D.!!$R3 1235
2 TraesCS6D01G349800 chr6A 593928808 593931056 2248 True 497.000000 972 83.262000 142 2106 3 chr6A.!!$R1 1964
3 TraesCS6D01G349800 chr6A 594364925 594366054 1129 False 279.500000 394 85.921500 627 1337 2 chr6A.!!$F3 710
4 TraesCS6D01G349800 chr6B 677044609 677045600 991 True 830.000000 830 82.439000 993 1978 1 chr6B.!!$R4 985
5 TraesCS6D01G349800 chr6B 676729381 676730540 1159 True 675.000000 675 78.289000 1207 2391 1 chr6B.!!$R3 1184
6 TraesCS6D01G349800 chr6B 676491597 676493349 1752 True 362.666667 678 83.393333 713 2130 3 chr6B.!!$R9 1417
7 TraesCS6D01G349800 chr6B 677087192 677088305 1113 True 358.000000 420 85.305000 993 2167 2 chr6B.!!$R12 1174
8 TraesCS6D01G349800 chr6B 676864677 676865818 1141 True 343.500000 420 84.982000 1011 2167 2 chr6B.!!$R11 1156
9 TraesCS6D01G349800 chr6B 676536446 676538315 1869 True 322.666667 470 82.670333 983 2166 3 chr6B.!!$R10 1183
10 TraesCS6D01G349800 chr6B 678540155 678542988 2833 False 251.333333 411 87.728333 138 1331 3 chr6B.!!$F4 1193
11 TraesCS6D01G349800 chr5A 472469393 472469932 539 False 350.000000 350 78.876000 1009 1590 1 chr5A.!!$F2 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
299 301 0.244721 GTGCCACCCAATGAAGAAGC 59.755 55.0 0.0 0.0 0.0 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2201 5788 0.034896 TCAAGAACAGGGCGAAGGAC 59.965 55.0 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.778834 ATCACACATATCAAGGCAAAATGA 57.221 33.333 0.00 0.00 0.00 2.57
24 25 6.198650 TCACACATATCAAGGCAAAATGAG 57.801 37.500 0.00 0.00 0.00 2.90
25 26 5.711506 TCACACATATCAAGGCAAAATGAGT 59.288 36.000 0.00 0.00 0.00 3.41
26 27 6.032094 CACACATATCAAGGCAAAATGAGTC 58.968 40.000 0.00 0.00 0.00 3.36
27 28 5.948162 ACACATATCAAGGCAAAATGAGTCT 59.052 36.000 0.00 0.00 0.00 3.24
28 29 7.066163 CACACATATCAAGGCAAAATGAGTCTA 59.934 37.037 0.00 0.00 0.00 2.59
29 30 7.776969 ACACATATCAAGGCAAAATGAGTCTAT 59.223 33.333 0.00 0.00 0.00 1.98
30 31 9.276590 CACATATCAAGGCAAAATGAGTCTATA 57.723 33.333 0.00 0.00 0.00 1.31
31 32 9.499479 ACATATCAAGGCAAAATGAGTCTATAG 57.501 33.333 0.00 0.00 0.00 1.31
32 33 6.874288 ATCAAGGCAAAATGAGTCTATAGC 57.126 37.500 0.00 0.00 0.00 2.97
33 34 5.126067 TCAAGGCAAAATGAGTCTATAGCC 58.874 41.667 0.00 0.00 41.08 3.93
39 40 8.848474 GGCAAAATGAGTCTATAGCCTAATAA 57.152 34.615 0.00 0.00 37.89 1.40
40 41 9.284968 GGCAAAATGAGTCTATAGCCTAATAAA 57.715 33.333 0.00 0.00 37.89 1.40
55 56 8.807948 AGCCTAATAAATGAAGTGTTACATGT 57.192 30.769 2.69 2.69 0.00 3.21
56 57 9.243105 AGCCTAATAAATGAAGTGTTACATGTT 57.757 29.630 2.30 0.00 0.00 2.71
62 63 7.575414 AAATGAAGTGTTACATGTTACCACA 57.425 32.000 12.16 7.50 37.31 4.17
63 64 7.759489 AATGAAGTGTTACATGTTACCACAT 57.241 32.000 12.16 9.15 45.18 3.21
64 65 8.856153 AATGAAGTGTTACATGTTACCACATA 57.144 30.769 12.16 4.70 42.14 2.29
65 66 9.461312 AATGAAGTGTTACATGTTACCACATAT 57.539 29.630 12.16 6.38 42.14 1.78
96 97 8.568676 TCCTCACTATAGAGATAGTAACATGC 57.431 38.462 6.78 0.00 45.42 4.06
97 98 7.612244 TCCTCACTATAGAGATAGTAACATGCC 59.388 40.741 6.78 0.00 45.42 4.40
98 99 7.379098 TCACTATAGAGATAGTAACATGCCG 57.621 40.000 6.78 0.00 45.42 5.69
99 100 7.166167 TCACTATAGAGATAGTAACATGCCGA 58.834 38.462 6.78 0.00 45.42 5.54
100 101 7.829706 TCACTATAGAGATAGTAACATGCCGAT 59.170 37.037 6.78 0.00 45.42 4.18
101 102 7.912773 CACTATAGAGATAGTAACATGCCGATG 59.087 40.741 6.78 0.00 45.42 3.84
102 103 6.842437 ATAGAGATAGTAACATGCCGATGT 57.158 37.500 0.00 0.00 45.24 3.06
130 131 6.328641 ACTCTATATTACTAGCCGTTGTGG 57.671 41.667 0.00 0.00 42.50 4.17
131 132 6.066690 ACTCTATATTACTAGCCGTTGTGGA 58.933 40.000 0.00 0.00 42.00 4.02
132 133 6.720288 ACTCTATATTACTAGCCGTTGTGGAT 59.280 38.462 0.00 0.00 42.00 3.41
133 134 7.886970 ACTCTATATTACTAGCCGTTGTGGATA 59.113 37.037 0.00 0.00 42.00 2.59
174 176 9.877178 AATTATATTTGCGAGGATTACTCTAGG 57.123 33.333 0.00 0.00 44.33 3.02
199 201 2.180769 CGACGCATGTTCCGAGGA 59.819 61.111 0.00 0.00 0.00 3.71
200 202 1.445410 CGACGCATGTTCCGAGGAA 60.445 57.895 0.00 0.00 0.00 3.36
235 237 1.570857 ATCTTTCCACATCCGGCCCA 61.571 55.000 0.00 0.00 0.00 5.36
241 243 3.399181 ACATCCGGCCCATCACGT 61.399 61.111 0.00 0.00 0.00 4.49
279 281 3.642755 CGCAAAAGACAGGAGCGT 58.357 55.556 0.00 0.00 43.08 5.07
299 301 0.244721 GTGCCACCCAATGAAGAAGC 59.755 55.000 0.00 0.00 0.00 3.86
301 303 0.899717 GCCACCCAATGAAGAAGCCA 60.900 55.000 0.00 0.00 0.00 4.75
319 321 2.540973 GCCAAAAGTGAAACGGAGACAC 60.541 50.000 0.00 0.00 45.86 3.67
346 348 1.248785 TAGCGAAAGAGACGGCCACT 61.249 55.000 2.24 0.19 0.00 4.00
350 352 1.157585 GAAAGAGACGGCCACTTTCC 58.842 55.000 20.84 8.74 41.71 3.13
355 357 1.375523 GACGGCCACTTTCCATCGT 60.376 57.895 2.24 0.00 0.00 3.73
356 358 1.359459 GACGGCCACTTTCCATCGTC 61.359 60.000 2.24 0.00 39.73 4.20
357 359 1.079127 CGGCCACTTTCCATCGTCT 60.079 57.895 2.24 0.00 0.00 4.18
358 360 1.084370 CGGCCACTTTCCATCGTCTC 61.084 60.000 2.24 0.00 0.00 3.36
359 361 1.084370 GGCCACTTTCCATCGTCTCG 61.084 60.000 0.00 0.00 0.00 4.04
360 362 0.389948 GCCACTTTCCATCGTCTCGT 60.390 55.000 0.00 0.00 0.00 4.18
361 363 1.135199 GCCACTTTCCATCGTCTCGTA 60.135 52.381 0.00 0.00 0.00 3.43
362 364 2.798680 CCACTTTCCATCGTCTCGTAG 58.201 52.381 0.00 0.00 0.00 3.51
363 365 2.422479 CCACTTTCCATCGTCTCGTAGA 59.578 50.000 0.00 0.00 0.00 2.59
364 366 3.427243 CACTTTCCATCGTCTCGTAGAC 58.573 50.000 5.30 5.30 41.71 2.59
365 367 3.079578 ACTTTCCATCGTCTCGTAGACA 58.920 45.455 13.14 3.92 45.30 3.41
430 449 3.195002 CGCGGCCGAATCACATGT 61.195 61.111 33.48 0.00 36.29 3.21
431 450 2.404789 GCGGCCGAATCACATGTG 59.595 61.111 33.48 20.18 0.00 3.21
436 455 0.734309 GCCGAATCACATGTGCATCA 59.266 50.000 21.38 4.03 0.00 3.07
507 539 1.341802 GCGCGAGTGAACAGATTCG 59.658 57.895 12.10 0.00 37.69 3.34
555 1978 3.771798 GACTATGTCGGTTCTTGGAGTC 58.228 50.000 0.00 0.00 0.00 3.36
558 1981 1.737008 GTCGGTTCTTGGAGTCCGC 60.737 63.158 4.30 0.00 42.28 5.54
563 1986 2.280628 GGTTCTTGGAGTCCGCAATAG 58.719 52.381 4.30 0.00 0.00 1.73
566 1991 3.973206 TCTTGGAGTCCGCAATAGAAA 57.027 42.857 4.30 0.00 0.00 2.52
568 1993 4.647611 TCTTGGAGTCCGCAATAGAAAAA 58.352 39.130 4.30 0.00 0.00 1.94
590 2015 3.940657 GCATCAGTGCTTCAGTATGAC 57.059 47.619 0.00 0.00 43.72 3.06
593 2018 5.675790 GCATCAGTGCTTCAGTATGACGTT 61.676 45.833 0.00 0.00 43.72 3.99
596 2021 9.830370 GCATCAGTGCTTCAGTATGACGTTTTT 62.830 40.741 0.00 0.00 43.72 1.94
663 2295 5.462068 TGGTGCAGAAATCGTTCGAATATAG 59.538 40.000 0.00 0.00 38.90 1.31
694 2425 9.113838 AGTTACTTCTTTGCCATGACTATAATG 57.886 33.333 0.00 0.00 0.00 1.90
825 2566 1.341080 CCACCTGCTTTGAACCCAAT 58.659 50.000 0.00 0.00 31.46 3.16
826 2567 1.001181 CCACCTGCTTTGAACCCAATG 59.999 52.381 0.00 0.00 31.46 2.82
839 2580 3.439540 CAATGCCGGTTCCCGTGG 61.440 66.667 1.90 0.00 46.80 4.94
900 3444 9.849166 TTTTTGAGAAACAAAGTTTAACTCGAT 57.151 25.926 0.00 0.00 46.93 3.59
901 3445 9.849166 TTTTGAGAAACAAAGTTTAACTCGATT 57.151 25.926 0.00 0.00 46.93 3.34
916 3460 3.002791 CTCGATTGAGCTGCAGGTTTTA 58.997 45.455 21.18 8.85 34.96 1.52
1047 3665 2.178984 CCACCTCCCTCCTCTAATCTCT 59.821 54.545 0.00 0.00 0.00 3.10
1048 3666 3.374762 CCACCTCCCTCCTCTAATCTCTT 60.375 52.174 0.00 0.00 0.00 2.85
1279 3906 3.720601 TTCCGCTGCAGCCTCCAT 61.721 61.111 32.07 0.00 37.91 3.41
1378 4065 2.759973 TCTAGGCGCCAGGTCAGG 60.760 66.667 31.54 9.89 0.00 3.86
1582 4776 0.848942 CGTCGACATGTCATAGCAGC 59.151 55.000 24.93 6.04 0.00 5.25
1626 4827 6.971184 CACAAATTGCACATAGGAGAGAAATC 59.029 38.462 0.00 0.00 0.00 2.17
1666 4886 2.628657 GCTGTATAGAAGATCGGTGGGT 59.371 50.000 0.00 0.00 0.00 4.51
1667 4887 3.069729 GCTGTATAGAAGATCGGTGGGTT 59.930 47.826 0.00 0.00 0.00 4.11
1668 4888 4.280174 GCTGTATAGAAGATCGGTGGGTTA 59.720 45.833 0.00 0.00 0.00 2.85
1669 4889 5.047235 GCTGTATAGAAGATCGGTGGGTTAT 60.047 44.000 0.00 0.00 0.00 1.89
1736 4975 7.278875 GGCCTGATCAATTAGCTAGCTTATAT 58.721 38.462 24.88 10.56 0.00 0.86
1783 5027 1.313129 GAGCCTCTTCCTCCTCCCT 59.687 63.158 0.00 0.00 0.00 4.20
1899 5444 6.363882 TGGTTCTGGATATACATCAATGCAA 58.636 36.000 0.00 0.00 32.32 4.08
2080 5648 0.612174 AAGCTCCTCAGTGGCGTCTA 60.612 55.000 0.00 0.00 35.26 2.59
2147 5715 2.194056 CCGGATCAGGCCAGCAAT 59.806 61.111 5.01 0.00 0.00 3.56
2163 5731 1.465354 GCAATTTGCAGCACGAGAGAG 60.465 52.381 16.35 0.00 44.26 3.20
2167 5735 2.462456 TTGCAGCACGAGAGAGATTT 57.538 45.000 0.00 0.00 0.00 2.17
2169 5737 1.547820 TGCAGCACGAGAGAGATTTCT 59.452 47.619 0.00 0.00 36.01 2.52
2170 5738 1.925847 GCAGCACGAGAGAGATTTCTG 59.074 52.381 0.00 0.00 32.53 3.02
2171 5739 2.673610 GCAGCACGAGAGAGATTTCTGT 60.674 50.000 0.00 0.00 32.53 3.41
2173 5741 4.738124 CAGCACGAGAGAGATTTCTGTAA 58.262 43.478 0.00 0.00 32.53 2.41
2174 5742 5.164233 CAGCACGAGAGAGATTTCTGTAAA 58.836 41.667 0.00 0.00 32.53 2.01
2177 5759 5.635700 GCACGAGAGAGATTTCTGTAAAGTT 59.364 40.000 0.00 0.00 32.53 2.66
2186 5768 4.497473 TTTCTGTAAAGTTTCATGGCGG 57.503 40.909 0.00 0.00 0.00 6.13
2187 5769 3.410631 TCTGTAAAGTTTCATGGCGGA 57.589 42.857 0.00 0.00 0.00 5.54
2188 5770 3.745799 TCTGTAAAGTTTCATGGCGGAA 58.254 40.909 0.00 0.00 0.00 4.30
2198 5785 0.816825 CATGGCGGAACTGATGAGGG 60.817 60.000 0.00 0.00 0.00 4.30
2199 5786 1.274703 ATGGCGGAACTGATGAGGGT 61.275 55.000 0.00 0.00 0.00 4.34
2201 5788 1.026718 GGCGGAACTGATGAGGGTTG 61.027 60.000 0.00 0.00 0.00 3.77
2203 5790 1.726853 CGGAACTGATGAGGGTTGTC 58.273 55.000 0.00 0.00 0.00 3.18
2214 5801 2.430367 GGTTGTCCTTCGCCCTGT 59.570 61.111 0.00 0.00 0.00 4.00
2217 5804 0.250338 GTTGTCCTTCGCCCTGTTCT 60.250 55.000 0.00 0.00 0.00 3.01
2222 5809 1.351017 TCCTTCGCCCTGTTCTTGATT 59.649 47.619 0.00 0.00 0.00 2.57
2226 5813 3.915437 TCGCCCTGTTCTTGATTTTTC 57.085 42.857 0.00 0.00 0.00 2.29
2228 5815 3.888930 TCGCCCTGTTCTTGATTTTTCTT 59.111 39.130 0.00 0.00 0.00 2.52
2229 5816 4.340950 TCGCCCTGTTCTTGATTTTTCTTT 59.659 37.500 0.00 0.00 0.00 2.52
2237 5833 7.790027 TGTTCTTGATTTTTCTTTTGGATCCA 58.210 30.769 11.44 11.44 0.00 3.41
2240 5836 8.192743 TCTTGATTTTTCTTTTGGATCCATGA 57.807 30.769 17.06 11.61 0.00 3.07
2287 5883 9.846248 AGAAGTGATGATATTTTTACTGTTTGC 57.154 29.630 0.00 0.00 0.00 3.68
2288 5884 8.673626 AAGTGATGATATTTTTACTGTTTGCG 57.326 30.769 0.00 0.00 0.00 4.85
2292 5888 5.874831 TGATATTTTTACTGTTTGCGCGAT 58.125 33.333 12.10 0.00 0.00 4.58
2297 5893 0.319986 TACTGTTTGCGCGATGGACA 60.320 50.000 12.10 7.60 0.00 4.02
2318 5914 0.944386 CGTAGCGATTGGGAATTGGG 59.056 55.000 0.00 0.00 0.00 4.12
2319 5915 1.474320 CGTAGCGATTGGGAATTGGGA 60.474 52.381 0.00 0.00 0.00 4.37
2320 5916 2.810400 CGTAGCGATTGGGAATTGGGAT 60.810 50.000 0.00 0.00 0.00 3.85
2321 5917 2.459555 AGCGATTGGGAATTGGGATT 57.540 45.000 0.00 0.00 0.00 3.01
2322 5918 2.310538 AGCGATTGGGAATTGGGATTC 58.689 47.619 0.00 0.00 40.78 2.52
2355 5951 2.975410 TCAACTTGCGCAAGAAGATG 57.025 45.000 46.69 35.51 40.79 2.90
2356 5952 2.493035 TCAACTTGCGCAAGAAGATGA 58.507 42.857 46.69 36.71 40.79 2.92
2357 5953 2.877786 TCAACTTGCGCAAGAAGATGAA 59.122 40.909 46.69 26.08 40.79 2.57
2373 5969 5.908562 AGATGAAGATGATGTTGGGAGAT 57.091 39.130 0.00 0.00 0.00 2.75
2397 5993 4.868900 GCGCGCGCACAGTAATGG 62.869 66.667 46.11 12.36 41.49 3.16
2398 5994 3.185365 CGCGCGCACAGTAATGGA 61.185 61.111 32.61 0.00 0.00 3.41
2399 5995 2.735677 CGCGCGCACAGTAATGGAA 61.736 57.895 32.61 0.00 0.00 3.53
2400 5996 1.721487 GCGCGCACAGTAATGGAAT 59.279 52.632 29.10 0.00 0.00 3.01
2401 5997 0.934496 GCGCGCACAGTAATGGAATA 59.066 50.000 29.10 0.00 0.00 1.75
2402 5998 1.531149 GCGCGCACAGTAATGGAATAT 59.469 47.619 29.10 0.00 0.00 1.28
2403 5999 2.032030 GCGCGCACAGTAATGGAATATT 60.032 45.455 29.10 0.00 0.00 1.28
2404 6000 3.544651 CGCGCACAGTAATGGAATATTG 58.455 45.455 8.75 0.00 0.00 1.90
2405 6001 3.247411 CGCGCACAGTAATGGAATATTGA 59.753 43.478 8.75 0.00 0.00 2.57
2406 6002 4.083855 CGCGCACAGTAATGGAATATTGAT 60.084 41.667 8.75 0.00 0.00 2.57
2407 6003 5.385617 GCGCACAGTAATGGAATATTGATC 58.614 41.667 0.30 0.00 0.00 2.92
2408 6004 5.049474 GCGCACAGTAATGGAATATTGATCA 60.049 40.000 0.30 0.00 0.00 2.92
2409 6005 6.348786 GCGCACAGTAATGGAATATTGATCAT 60.349 38.462 0.30 0.00 0.00 2.45
2410 6006 7.148423 GCGCACAGTAATGGAATATTGATCATA 60.148 37.037 0.30 0.00 0.00 2.15
2411 6007 8.171196 CGCACAGTAATGGAATATTGATCATAC 58.829 37.037 0.00 0.00 0.00 2.39
2412 6008 8.171196 GCACAGTAATGGAATATTGATCATACG 58.829 37.037 0.00 0.00 0.00 3.06
2413 6009 9.208022 CACAGTAATGGAATATTGATCATACGT 57.792 33.333 0.00 0.00 0.00 3.57
2414 6010 9.778741 ACAGTAATGGAATATTGATCATACGTT 57.221 29.630 0.00 0.00 0.00 3.99
2416 6012 9.778741 AGTAATGGAATATTGATCATACGTTGT 57.221 29.630 0.00 0.00 0.00 3.32
2420 6016 7.427214 TGGAATATTGATCATACGTTGTACGA 58.573 34.615 6.19 0.00 46.05 3.43
2421 6017 7.593644 TGGAATATTGATCATACGTTGTACGAG 59.406 37.037 6.19 0.00 46.05 4.18
2422 6018 6.929587 ATATTGATCATACGTTGTACGAGC 57.070 37.500 6.19 0.00 46.05 5.03
2423 6019 3.768468 TGATCATACGTTGTACGAGCA 57.232 42.857 6.19 0.00 46.05 4.26
2424 6020 3.691498 TGATCATACGTTGTACGAGCAG 58.309 45.455 6.19 0.00 46.05 4.24
2425 6021 2.554806 TCATACGTTGTACGAGCAGG 57.445 50.000 6.19 0.00 46.05 4.85
2426 6022 1.814394 TCATACGTTGTACGAGCAGGT 59.186 47.619 6.19 0.00 46.05 4.00
2427 6023 2.159476 TCATACGTTGTACGAGCAGGTC 60.159 50.000 6.19 0.00 46.05 3.85
2428 6024 1.237533 TACGTTGTACGAGCAGGTCA 58.762 50.000 6.19 0.00 46.05 4.02
2429 6025 0.386476 ACGTTGTACGAGCAGGTCAA 59.614 50.000 6.19 0.00 46.05 3.18
2430 6026 0.782384 CGTTGTACGAGCAGGTCAAC 59.218 55.000 0.00 0.00 46.05 3.18
2431 6027 1.860676 GTTGTACGAGCAGGTCAACA 58.139 50.000 0.00 0.67 37.43 3.33
2432 6028 1.792949 GTTGTACGAGCAGGTCAACAG 59.207 52.381 0.00 0.00 37.43 3.16
2433 6029 1.324383 TGTACGAGCAGGTCAACAGA 58.676 50.000 0.00 0.00 0.00 3.41
2434 6030 1.684450 TGTACGAGCAGGTCAACAGAA 59.316 47.619 0.00 0.00 0.00 3.02
2435 6031 2.059541 GTACGAGCAGGTCAACAGAAC 58.940 52.381 0.00 0.00 0.00 3.01
2436 6032 0.464036 ACGAGCAGGTCAACAGAACA 59.536 50.000 0.00 0.00 0.00 3.18
2437 6033 0.861837 CGAGCAGGTCAACAGAACAC 59.138 55.000 0.00 0.00 0.00 3.32
2438 6034 1.806247 CGAGCAGGTCAACAGAACACA 60.806 52.381 0.00 0.00 0.00 3.72
2439 6035 2.498167 GAGCAGGTCAACAGAACACAT 58.502 47.619 0.00 0.00 0.00 3.21
2440 6036 2.224606 AGCAGGTCAACAGAACACATG 58.775 47.619 0.00 0.00 0.00 3.21
2441 6037 1.335324 GCAGGTCAACAGAACACATGC 60.335 52.381 0.00 0.00 40.24 4.06
2442 6038 1.948834 CAGGTCAACAGAACACATGCA 59.051 47.619 0.00 0.00 0.00 3.96
2443 6039 2.555325 CAGGTCAACAGAACACATGCAT 59.445 45.455 0.00 0.00 0.00 3.96
2444 6040 2.555325 AGGTCAACAGAACACATGCATG 59.445 45.455 25.09 25.09 0.00 4.06
2445 6041 2.553602 GGTCAACAGAACACATGCATGA 59.446 45.455 32.75 4.29 0.00 3.07
2446 6042 3.558505 GTCAACAGAACACATGCATGAC 58.441 45.455 32.75 18.73 33.47 3.06
2447 6043 2.553602 TCAACAGAACACATGCATGACC 59.446 45.455 32.75 16.80 0.00 4.02
2448 6044 1.538047 ACAGAACACATGCATGACCC 58.462 50.000 32.75 17.12 0.00 4.46
2449 6045 0.448990 CAGAACACATGCATGACCCG 59.551 55.000 32.75 18.64 0.00 5.28
2450 6046 0.036732 AGAACACATGCATGACCCGT 59.963 50.000 32.75 19.25 0.00 5.28
2451 6047 0.447801 GAACACATGCATGACCCGTC 59.552 55.000 32.75 16.87 0.00 4.79
2452 6048 1.298157 AACACATGCATGACCCGTCG 61.298 55.000 32.75 13.14 0.00 5.12
2453 6049 1.447663 CACATGCATGACCCGTCGA 60.448 57.895 32.75 0.00 0.00 4.20
2454 6050 1.018752 CACATGCATGACCCGTCGAA 61.019 55.000 32.75 0.00 0.00 3.71
2455 6051 0.321210 ACATGCATGACCCGTCGAAA 60.321 50.000 32.75 0.00 0.00 3.46
2456 6052 1.016627 CATGCATGACCCGTCGAAAT 58.983 50.000 22.59 0.00 0.00 2.17
2457 6053 1.401552 CATGCATGACCCGTCGAAATT 59.598 47.619 22.59 0.00 0.00 1.82
2458 6054 2.388310 TGCATGACCCGTCGAAATTA 57.612 45.000 0.00 0.00 0.00 1.40
2459 6055 2.004017 TGCATGACCCGTCGAAATTAC 58.996 47.619 0.00 0.00 0.00 1.89
2460 6056 2.277084 GCATGACCCGTCGAAATTACT 58.723 47.619 0.00 0.00 0.00 2.24
2461 6057 2.676342 GCATGACCCGTCGAAATTACTT 59.324 45.455 0.00 0.00 0.00 2.24
2462 6058 3.485216 GCATGACCCGTCGAAATTACTTG 60.485 47.826 0.00 0.00 0.00 3.16
2463 6059 3.663995 TGACCCGTCGAAATTACTTGA 57.336 42.857 0.00 0.00 0.00 3.02
2464 6060 4.196626 TGACCCGTCGAAATTACTTGAT 57.803 40.909 0.00 0.00 0.00 2.57
2465 6061 4.178540 TGACCCGTCGAAATTACTTGATC 58.821 43.478 0.00 0.00 0.00 2.92
2466 6062 3.184541 ACCCGTCGAAATTACTTGATCG 58.815 45.455 0.00 0.00 36.67 3.69
2467 6063 2.034001 CCCGTCGAAATTACTTGATCGC 60.034 50.000 0.00 0.00 35.39 4.58
2468 6064 2.346376 CCGTCGAAATTACTTGATCGCG 60.346 50.000 0.00 0.00 35.39 5.87
2469 6065 2.528688 CGTCGAAATTACTTGATCGCGA 59.471 45.455 13.09 13.09 37.16 5.87
2470 6066 3.596454 CGTCGAAATTACTTGATCGCGAC 60.596 47.826 12.93 6.32 42.21 5.19
2471 6067 3.302434 GTCGAAATTACTTGATCGCGACA 59.698 43.478 12.93 9.33 44.24 4.35
2472 6068 4.026804 GTCGAAATTACTTGATCGCGACAT 60.027 41.667 12.93 0.00 44.24 3.06
2473 6069 4.206404 TCGAAATTACTTGATCGCGACATC 59.794 41.667 12.93 6.91 35.39 3.06
2474 6070 4.207224 CGAAATTACTTGATCGCGACATCT 59.793 41.667 12.93 0.00 0.00 2.90
2475 6071 5.398416 CGAAATTACTTGATCGCGACATCTA 59.602 40.000 12.93 1.75 0.00 1.98
2476 6072 6.088217 CGAAATTACTTGATCGCGACATCTAT 59.912 38.462 12.93 0.00 0.00 1.98
2477 6073 6.696825 AATTACTTGATCGCGACATCTATG 57.303 37.500 12.93 3.48 0.00 2.23
2478 6074 2.398498 ACTTGATCGCGACATCTATGC 58.602 47.619 12.93 0.00 0.00 3.14
2479 6075 2.035193 ACTTGATCGCGACATCTATGCT 59.965 45.455 12.93 0.00 0.00 3.79
2480 6076 2.338140 TGATCGCGACATCTATGCTC 57.662 50.000 12.93 1.56 0.00 4.26
2481 6077 1.068264 TGATCGCGACATCTATGCTCC 60.068 52.381 12.93 0.00 0.00 4.70
2482 6078 0.244994 ATCGCGACATCTATGCTCCC 59.755 55.000 12.93 0.00 0.00 4.30
2483 6079 1.373497 CGCGACATCTATGCTCCCC 60.373 63.158 0.00 0.00 0.00 4.81
2484 6080 1.748403 GCGACATCTATGCTCCCCA 59.252 57.895 0.00 0.00 0.00 4.96
2485 6081 0.601311 GCGACATCTATGCTCCCCAC 60.601 60.000 0.00 0.00 0.00 4.61
2486 6082 0.034059 CGACATCTATGCTCCCCACC 59.966 60.000 0.00 0.00 0.00 4.61
2487 6083 0.034059 GACATCTATGCTCCCCACCG 59.966 60.000 0.00 0.00 0.00 4.94
2488 6084 0.398522 ACATCTATGCTCCCCACCGA 60.399 55.000 0.00 0.00 0.00 4.69
2489 6085 0.319728 CATCTATGCTCCCCACCGAG 59.680 60.000 0.00 0.00 0.00 4.63
2500 6096 4.778415 CACCGAGCACCGTCCGAG 62.778 72.222 0.00 0.00 36.31 4.63
2536 6132 2.809174 CGCAGACGCACAATCGGA 60.809 61.111 0.00 0.00 38.40 4.55
2537 6133 2.778679 GCAGACGCACAATCGGAC 59.221 61.111 0.00 0.00 38.36 4.79
2538 6134 1.738099 GCAGACGCACAATCGGACT 60.738 57.895 0.00 0.00 38.36 3.85
2539 6135 1.687494 GCAGACGCACAATCGGACTC 61.687 60.000 0.00 0.00 38.36 3.36
2540 6136 1.154016 AGACGCACAATCGGACTCG 60.154 57.895 0.00 0.00 37.82 4.18
2564 6160 3.053831 GAAGGGTTCGAATGAAGGTCA 57.946 47.619 0.00 0.00 33.98 4.02
2565 6161 2.770164 AGGGTTCGAATGAAGGTCAG 57.230 50.000 0.00 0.00 33.98 3.51
2566 6162 1.978580 AGGGTTCGAATGAAGGTCAGT 59.021 47.619 0.00 0.00 33.98 3.41
2567 6163 2.028020 AGGGTTCGAATGAAGGTCAGTC 60.028 50.000 0.00 0.00 38.04 3.51
2568 6164 2.028020 GGGTTCGAATGAAGGTCAGTCT 60.028 50.000 0.00 0.00 39.13 3.24
2569 6165 3.254892 GGTTCGAATGAAGGTCAGTCTC 58.745 50.000 0.00 0.00 39.13 3.36
2570 6166 3.056465 GGTTCGAATGAAGGTCAGTCTCT 60.056 47.826 0.00 0.00 39.13 3.10
2571 6167 4.170256 GTTCGAATGAAGGTCAGTCTCTC 58.830 47.826 0.00 0.00 39.13 3.20
2572 6168 3.691575 TCGAATGAAGGTCAGTCTCTCT 58.308 45.455 4.43 0.00 39.13 3.10
2573 6169 4.082845 TCGAATGAAGGTCAGTCTCTCTT 58.917 43.478 4.43 0.00 39.13 2.85
2574 6170 4.082517 TCGAATGAAGGTCAGTCTCTCTTG 60.083 45.833 4.43 0.00 39.13 3.02
2575 6171 4.502962 GAATGAAGGTCAGTCTCTCTTGG 58.497 47.826 0.00 0.00 38.34 3.61
2576 6172 1.620819 TGAAGGTCAGTCTCTCTTGGC 59.379 52.381 0.00 0.00 0.00 4.52
2577 6173 1.620819 GAAGGTCAGTCTCTCTTGGCA 59.379 52.381 0.00 0.00 0.00 4.92
2578 6174 0.972883 AGGTCAGTCTCTCTTGGCAC 59.027 55.000 0.00 0.00 0.00 5.01
2579 6175 0.972883 GGTCAGTCTCTCTTGGCACT 59.027 55.000 0.00 0.00 0.00 4.40
2580 6176 1.337635 GGTCAGTCTCTCTTGGCACTG 60.338 57.143 0.00 0.00 38.09 3.66
2581 6177 1.615883 GTCAGTCTCTCTTGGCACTGA 59.384 52.381 0.00 0.00 42.34 3.41
2582 6178 1.615883 TCAGTCTCTCTTGGCACTGAC 59.384 52.381 0.00 0.00 40.25 3.51
2583 6179 1.342496 CAGTCTCTCTTGGCACTGACA 59.658 52.381 0.00 0.00 38.90 3.58
2584 6180 1.342819 AGTCTCTCTTGGCACTGACAC 59.657 52.381 0.00 0.00 0.00 3.67
2585 6181 0.315251 TCTCTCTTGGCACTGACACG 59.685 55.000 0.00 0.00 0.00 4.49
2586 6182 0.315251 CTCTCTTGGCACTGACACGA 59.685 55.000 0.00 0.00 0.00 4.35
2587 6183 0.032130 TCTCTTGGCACTGACACGAC 59.968 55.000 0.00 0.00 0.00 4.34
2588 6184 0.249447 CTCTTGGCACTGACACGACA 60.249 55.000 0.00 0.00 0.00 4.35
2589 6185 0.392706 TCTTGGCACTGACACGACAT 59.607 50.000 0.00 0.00 0.00 3.06
2590 6186 0.514255 CTTGGCACTGACACGACATG 59.486 55.000 0.00 0.00 0.00 3.21
2591 6187 0.105778 TTGGCACTGACACGACATGA 59.894 50.000 0.00 0.00 0.00 3.07
2592 6188 0.321346 TGGCACTGACACGACATGAT 59.679 50.000 0.00 0.00 0.00 2.45
2593 6189 1.270785 TGGCACTGACACGACATGATT 60.271 47.619 0.00 0.00 0.00 2.57
2594 6190 1.129251 GGCACTGACACGACATGATTG 59.871 52.381 0.00 0.00 0.00 2.67
2595 6191 1.129251 GCACTGACACGACATGATTGG 59.871 52.381 0.00 0.00 0.00 3.16
2596 6192 1.129251 CACTGACACGACATGATTGGC 59.871 52.381 0.00 0.00 0.00 4.52
2597 6193 0.729116 CTGACACGACATGATTGGCC 59.271 55.000 0.00 0.00 0.00 5.36
2598 6194 0.036022 TGACACGACATGATTGGCCA 59.964 50.000 0.00 0.00 0.00 5.36
2599 6195 1.164411 GACACGACATGATTGGCCAA 58.836 50.000 23.00 23.00 0.00 4.52
2600 6196 1.539388 GACACGACATGATTGGCCAAA 59.461 47.619 24.71 7.42 0.00 3.28
2601 6197 1.269448 ACACGACATGATTGGCCAAAC 59.731 47.619 24.71 21.22 0.00 2.93
2602 6198 0.521291 ACGACATGATTGGCCAAACG 59.479 50.000 24.71 20.89 0.00 3.60
2603 6199 0.798009 CGACATGATTGGCCAAACGC 60.798 55.000 24.71 15.35 0.00 4.84
2614 6210 3.055719 CAAACGCCAGGGCACGAT 61.056 61.111 11.42 0.00 42.06 3.73
2615 6211 2.746277 AAACGCCAGGGCACGATC 60.746 61.111 11.42 0.00 42.06 3.69
2619 6215 4.148825 GCCAGGGCACGATCGAGT 62.149 66.667 24.34 0.00 41.49 4.18
2620 6216 2.105128 CCAGGGCACGATCGAGTC 59.895 66.667 24.34 16.28 0.00 3.36
2621 6217 2.710902 CCAGGGCACGATCGAGTCA 61.711 63.158 24.34 0.00 0.00 3.41
2622 6218 1.226802 CAGGGCACGATCGAGTCAG 60.227 63.158 24.34 8.29 0.00 3.51
2623 6219 1.679305 AGGGCACGATCGAGTCAGT 60.679 57.895 24.34 3.56 0.00 3.41
2624 6220 1.517257 GGGCACGATCGAGTCAGTG 60.517 63.158 24.34 9.55 35.72 3.66
2625 6221 2.161486 GGCACGATCGAGTCAGTGC 61.161 63.158 24.34 19.12 46.69 4.40
2626 6222 1.444383 GCACGATCGAGTCAGTGCA 60.444 57.895 24.34 0.00 46.67 4.57
2627 6223 1.678269 GCACGATCGAGTCAGTGCAC 61.678 60.000 24.34 9.40 46.67 4.57
2628 6224 0.387239 CACGATCGAGTCAGTGCACA 60.387 55.000 24.34 0.00 0.00 4.57
2629 6225 0.109551 ACGATCGAGTCAGTGCACAG 60.110 55.000 24.34 11.93 0.00 3.66
2630 6226 1.409227 CGATCGAGTCAGTGCACAGC 61.409 60.000 21.04 8.40 0.00 4.40
2631 6227 1.079543 ATCGAGTCAGTGCACAGCC 60.080 57.895 21.04 0.00 0.00 4.85
2632 6228 1.820010 ATCGAGTCAGTGCACAGCCA 61.820 55.000 21.04 0.00 0.00 4.75
2633 6229 2.313172 CGAGTCAGTGCACAGCCAC 61.313 63.158 21.04 9.36 35.98 5.01
2634 6230 1.070445 GAGTCAGTGCACAGCCACT 59.930 57.895 21.04 14.08 46.47 4.00
2635 6231 0.948141 GAGTCAGTGCACAGCCACTC 60.948 60.000 21.04 18.36 43.85 3.51
2636 6232 2.029518 TCAGTGCACAGCCACTCG 59.970 61.111 21.04 0.00 43.85 4.18
2637 6233 3.046087 CAGTGCACAGCCACTCGG 61.046 66.667 21.04 0.00 43.85 4.63
2638 6234 4.320456 AGTGCACAGCCACTCGGG 62.320 66.667 21.04 0.00 42.10 5.14
2647 6243 3.668386 CCACTCGGGCAGAAAACC 58.332 61.111 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.379133 ACTCATTTTGCCTTGATATGTGTGAT 59.621 34.615 0.00 0.00 0.00 3.06
1 2 5.711506 ACTCATTTTGCCTTGATATGTGTGA 59.288 36.000 0.00 0.00 0.00 3.58
2 3 5.957798 ACTCATTTTGCCTTGATATGTGTG 58.042 37.500 0.00 0.00 0.00 3.82
4 5 6.446781 AGACTCATTTTGCCTTGATATGTG 57.553 37.500 0.00 0.00 0.00 3.21
5 6 9.499479 CTATAGACTCATTTTGCCTTGATATGT 57.501 33.333 0.00 0.00 0.00 2.29
6 7 8.449397 GCTATAGACTCATTTTGCCTTGATATG 58.551 37.037 3.21 0.00 0.00 1.78
7 8 7.609532 GGCTATAGACTCATTTTGCCTTGATAT 59.390 37.037 3.21 0.00 36.52 1.63
8 9 6.936900 GGCTATAGACTCATTTTGCCTTGATA 59.063 38.462 3.21 0.00 36.52 2.15
9 10 5.767168 GGCTATAGACTCATTTTGCCTTGAT 59.233 40.000 3.21 0.00 36.52 2.57
10 11 5.104360 AGGCTATAGACTCATTTTGCCTTGA 60.104 40.000 0.83 0.00 46.04 3.02
11 12 5.128919 AGGCTATAGACTCATTTTGCCTTG 58.871 41.667 0.83 0.00 46.04 3.61
12 13 5.379706 AGGCTATAGACTCATTTTGCCTT 57.620 39.130 0.83 0.00 46.04 4.35
14 15 8.848474 TTATTAGGCTATAGACTCATTTTGCC 57.152 34.615 12.64 0.00 39.40 4.52
29 30 9.899661 ACATGTAACACTTCATTTATTAGGCTA 57.100 29.630 0.00 0.00 0.00 3.93
30 31 8.807948 ACATGTAACACTTCATTTATTAGGCT 57.192 30.769 0.00 0.00 0.00 4.58
70 71 9.015367 GCATGTTACTATCTCTATAGTGAGGAA 57.985 37.037 10.10 0.00 46.28 3.36
71 72 7.612244 GGCATGTTACTATCTCTATAGTGAGGA 59.388 40.741 10.10 1.06 46.28 3.71
72 73 7.414651 CGGCATGTTACTATCTCTATAGTGAGG 60.415 44.444 10.10 7.91 46.28 3.86
73 74 7.334671 TCGGCATGTTACTATCTCTATAGTGAG 59.665 40.741 10.10 1.10 46.28 3.51
74 75 7.166167 TCGGCATGTTACTATCTCTATAGTGA 58.834 38.462 6.95 6.95 46.28 3.41
75 76 7.379098 TCGGCATGTTACTATCTCTATAGTG 57.621 40.000 8.04 0.00 46.28 2.74
76 77 7.612244 ACATCGGCATGTTACTATCTCTATAGT 59.388 37.037 0.00 3.73 40.66 2.12
77 78 7.990917 ACATCGGCATGTTACTATCTCTATAG 58.009 38.462 0.00 0.00 40.66 1.31
78 79 7.939784 ACATCGGCATGTTACTATCTCTATA 57.060 36.000 0.00 0.00 40.66 1.31
79 80 6.842437 ACATCGGCATGTTACTATCTCTAT 57.158 37.500 0.00 0.00 40.66 1.98
104 105 8.521176 CCACAACGGCTAGTAATATAGAGTAAT 58.479 37.037 0.00 0.00 0.00 1.89
105 106 7.720957 TCCACAACGGCTAGTAATATAGAGTAA 59.279 37.037 0.00 0.00 33.14 2.24
106 107 7.226441 TCCACAACGGCTAGTAATATAGAGTA 58.774 38.462 0.00 0.00 33.14 2.59
107 108 6.066690 TCCACAACGGCTAGTAATATAGAGT 58.933 40.000 0.00 0.00 33.14 3.24
108 109 6.570672 TCCACAACGGCTAGTAATATAGAG 57.429 41.667 0.00 0.00 33.14 2.43
109 110 7.886970 ACTATCCACAACGGCTAGTAATATAGA 59.113 37.037 0.00 0.00 43.48 1.98
110 111 8.053026 ACTATCCACAACGGCTAGTAATATAG 57.947 38.462 0.00 0.00 43.48 1.31
111 112 7.886970 AGACTATCCACAACGGCTAGTAATATA 59.113 37.037 0.00 0.00 44.95 0.86
112 113 6.720288 AGACTATCCACAACGGCTAGTAATAT 59.280 38.462 0.00 0.00 44.95 1.28
113 114 6.066690 AGACTATCCACAACGGCTAGTAATA 58.933 40.000 0.00 0.00 44.95 0.98
114 115 4.894114 AGACTATCCACAACGGCTAGTAAT 59.106 41.667 0.00 0.00 44.95 1.89
115 116 4.275810 AGACTATCCACAACGGCTAGTAA 58.724 43.478 0.00 0.00 44.95 2.24
116 117 3.894759 AGACTATCCACAACGGCTAGTA 58.105 45.455 0.00 0.00 44.95 1.82
118 119 4.913335 TTAGACTATCCACAACGGCTAG 57.087 45.455 0.00 0.00 39.11 3.42
119 120 4.708421 AGTTTAGACTATCCACAACGGCTA 59.292 41.667 0.00 0.00 33.32 3.93
120 121 3.514309 AGTTTAGACTATCCACAACGGCT 59.486 43.478 0.00 0.00 33.32 5.52
121 122 3.858247 AGTTTAGACTATCCACAACGGC 58.142 45.455 0.00 0.00 33.32 5.68
122 123 4.103357 CGAGTTTAGACTATCCACAACGG 58.897 47.826 0.00 0.00 35.88 4.44
123 124 4.978186 TCGAGTTTAGACTATCCACAACG 58.022 43.478 0.00 0.00 35.88 4.10
124 125 5.952033 ACTCGAGTTTAGACTATCCACAAC 58.048 41.667 13.58 0.00 35.88 3.32
125 126 7.692460 TTACTCGAGTTTAGACTATCCACAA 57.308 36.000 25.44 3.32 35.88 3.33
126 127 7.876936 ATTACTCGAGTTTAGACTATCCACA 57.123 36.000 25.44 0.00 35.88 4.17
134 135 9.990888 CGCAAATATAATTACTCGAGTTTAGAC 57.009 33.333 25.44 2.22 0.00 2.59
135 136 9.955208 TCGCAAATATAATTACTCGAGTTTAGA 57.045 29.630 25.44 14.57 0.00 2.10
140 141 6.978338 TCCTCGCAAATATAATTACTCGAGT 58.022 36.000 23.66 23.66 40.10 4.18
174 176 1.531058 GGAACATGCGTCGGTTAATGC 60.531 52.381 0.00 0.00 0.00 3.56
235 237 3.504520 GGTGGGTGTATTTTCAACGTGAT 59.495 43.478 0.00 0.00 0.00 3.06
241 243 2.785562 CTCCGGTGGGTGTATTTTCAA 58.214 47.619 0.00 0.00 33.83 2.69
279 281 1.619654 CTTCTTCATTGGGTGGCACA 58.380 50.000 20.82 0.00 0.00 4.57
299 301 2.286184 CGTGTCTCCGTTTCACTTTTGG 60.286 50.000 0.00 0.00 0.00 3.28
301 303 1.937899 CCGTGTCTCCGTTTCACTTTT 59.062 47.619 0.00 0.00 0.00 2.27
319 321 0.809385 TCTCTTTCGCTACCACTCCG 59.191 55.000 0.00 0.00 0.00 4.63
355 357 1.012086 CGATTCCGGTGTCTACGAGA 58.988 55.000 0.00 0.00 0.00 4.04
356 358 1.012086 TCGATTCCGGTGTCTACGAG 58.988 55.000 0.00 0.00 36.24 4.18
357 359 0.729116 GTCGATTCCGGTGTCTACGA 59.271 55.000 0.00 3.17 36.24 3.43
358 360 0.588233 CGTCGATTCCGGTGTCTACG 60.588 60.000 16.48 16.48 36.24 3.51
359 361 0.248377 CCGTCGATTCCGGTGTCTAC 60.248 60.000 0.00 2.49 40.59 2.59
360 362 0.392863 TCCGTCGATTCCGGTGTCTA 60.393 55.000 12.10 0.00 45.63 2.59
361 363 1.676635 TCCGTCGATTCCGGTGTCT 60.677 57.895 12.10 0.00 45.63 3.41
362 364 1.515736 GTCCGTCGATTCCGGTGTC 60.516 63.158 12.10 0.00 45.63 3.67
363 365 2.570181 GTCCGTCGATTCCGGTGT 59.430 61.111 12.10 0.00 45.63 4.16
364 366 2.578713 CGTCCGTCGATTCCGGTG 60.579 66.667 12.10 3.80 45.63 4.94
365 367 4.487412 GCGTCCGTCGATTCCGGT 62.487 66.667 12.10 0.00 45.63 5.28
421 440 1.097232 CCGGTGATGCACATGTGATT 58.903 50.000 29.80 15.03 35.86 2.57
451 470 1.597461 CGAAGGAAGGTCAGGGGAC 59.403 63.158 0.00 0.00 43.55 4.46
452 471 2.291043 GCGAAGGAAGGTCAGGGGA 61.291 63.158 0.00 0.00 0.00 4.81
453 472 2.269241 GCGAAGGAAGGTCAGGGG 59.731 66.667 0.00 0.00 0.00 4.79
455 474 2.815647 GCGCGAAGGAAGGTCAGG 60.816 66.667 12.10 0.00 0.00 3.86
456 475 3.181967 CGCGCGAAGGAAGGTCAG 61.182 66.667 28.94 0.00 0.00 3.51
457 476 4.735132 CCGCGCGAAGGAAGGTCA 62.735 66.667 34.63 0.00 0.00 4.02
507 539 4.166011 GCAGTGTTCATCGGCGCC 62.166 66.667 19.07 19.07 0.00 6.53
538 575 0.246635 CGGACTCCAAGAACCGACAT 59.753 55.000 0.00 0.00 46.94 3.06
539 576 1.663739 CGGACTCCAAGAACCGACA 59.336 57.895 0.00 0.00 46.94 4.35
540 577 1.737008 GCGGACTCCAAGAACCGAC 60.737 63.158 16.38 7.95 46.94 4.79
541 578 1.750341 TTGCGGACTCCAAGAACCGA 61.750 55.000 16.38 4.61 46.94 4.69
545 1968 3.973206 TTCTATTGCGGACTCCAAGAA 57.027 42.857 0.00 0.00 0.00 2.52
546 1969 3.973206 TTTCTATTGCGGACTCCAAGA 57.027 42.857 0.00 0.00 0.00 3.02
548 1971 4.380444 GCATTTTTCTATTGCGGACTCCAA 60.380 41.667 0.00 0.00 0.00 3.53
551 1974 4.355543 TGCATTTTTCTATTGCGGACTC 57.644 40.909 0.00 0.00 39.23 3.36
553 1976 4.671377 TGATGCATTTTTCTATTGCGGAC 58.329 39.130 0.00 0.00 39.23 4.79
555 1978 4.501559 CACTGATGCATTTTTCTATTGCGG 59.498 41.667 0.00 0.00 39.23 5.69
593 2018 4.130857 TCCGTGTGAACTGCTCATAAAAA 58.869 39.130 0.00 0.00 36.14 1.94
596 2021 3.394674 TTCCGTGTGAACTGCTCATAA 57.605 42.857 0.00 0.00 36.14 1.90
598 2023 1.873591 GTTTCCGTGTGAACTGCTCAT 59.126 47.619 0.00 0.00 36.14 2.90
599 2024 1.295792 GTTTCCGTGTGAACTGCTCA 58.704 50.000 0.00 0.00 31.05 4.26
604 2233 2.116827 TGGTTGTTTCCGTGTGAACT 57.883 45.000 0.00 0.00 31.05 3.01
663 2295 7.097834 AGTCATGGCAAAGAAGTAACTAGTAC 58.902 38.462 0.00 0.00 0.00 2.73
671 2402 7.282585 AGCATTATAGTCATGGCAAAGAAGTA 58.717 34.615 0.00 0.00 0.00 2.24
672 2403 6.125029 AGCATTATAGTCATGGCAAAGAAGT 58.875 36.000 0.00 0.00 0.00 3.01
694 2425 5.875359 ACAAAACCAGTATCTTGCTACTAGC 59.125 40.000 0.61 0.61 42.82 3.42
760 2499 4.141846 TGCCAACCTGCTTTGAAATACAAA 60.142 37.500 0.00 0.00 44.79 2.83
762 2501 2.961741 TGCCAACCTGCTTTGAAATACA 59.038 40.909 0.00 0.00 0.00 2.29
839 2580 2.103263 CTGAGGTTATGGGTAGCACTCC 59.897 54.545 0.00 0.00 0.00 3.85
841 2582 2.834113 ACTGAGGTTATGGGTAGCACT 58.166 47.619 0.00 0.00 0.00 4.40
900 3444 2.083774 CGGATAAAACCTGCAGCTCAA 58.916 47.619 8.66 0.00 0.00 3.02
901 3445 1.737838 CGGATAAAACCTGCAGCTCA 58.262 50.000 8.66 0.00 0.00 4.26
916 3460 3.008704 AGTTTGGTAACTTAGTGGCGGAT 59.991 43.478 0.00 0.00 41.85 4.18
985 3532 1.142688 AGGAGGGGCTTTGTGATGGT 61.143 55.000 0.00 0.00 0.00 3.55
991 3603 0.912006 GAGGAGAGGAGGGGCTTTGT 60.912 60.000 0.00 0.00 0.00 2.83
1047 3665 2.279851 CCGCCGTCGCCATGATAA 60.280 61.111 0.00 0.00 0.00 1.75
1048 3666 4.961511 GCCGCCGTCGCCATGATA 62.962 66.667 0.00 0.00 0.00 2.15
1084 3702 0.772124 AGGGGCTCAAAAGGACAGGA 60.772 55.000 0.00 0.00 0.00 3.86
1212 3839 1.890894 CAGGACCGACGGATCTTGT 59.109 57.895 23.38 0.00 0.00 3.16
1279 3906 1.219124 CTCCTGCTTGCGCTCCTTA 59.781 57.895 9.73 0.00 36.97 2.69
1507 4669 4.856801 GCCATGGACACGGCGGAT 62.857 66.667 18.40 0.00 38.82 4.18
1607 4808 4.141620 GGAGGATTTCTCTCCTATGTGCAA 60.142 45.833 0.00 0.00 45.89 4.08
1666 4886 5.546499 ACTCCAATCTTCCGGCCTAATATAA 59.454 40.000 0.00 0.00 0.00 0.98
1667 4887 5.091552 ACTCCAATCTTCCGGCCTAATATA 58.908 41.667 0.00 0.00 0.00 0.86
1668 4888 3.910627 ACTCCAATCTTCCGGCCTAATAT 59.089 43.478 0.00 0.00 0.00 1.28
1669 4889 3.314693 ACTCCAATCTTCCGGCCTAATA 58.685 45.455 0.00 0.00 0.00 0.98
1736 4975 9.582648 TCTATGTACAGCCACTCTATATACAAA 57.417 33.333 0.33 0.00 0.00 2.83
1783 5027 2.672195 CGAACTCACTCTATGTGCAGCA 60.672 50.000 0.00 0.00 45.81 4.41
1807 5335 2.238084 TGTACAGGTGGAGCAGAGAT 57.762 50.000 0.00 0.00 0.00 2.75
1899 5444 5.132502 TGTGTCTCCAATTTGTCACTCATT 58.867 37.500 0.00 0.00 0.00 2.57
1980 5534 0.886490 AGAGAGTTGTTGCGGCAAGG 60.886 55.000 16.97 0.00 0.00 3.61
1981 5538 0.236711 CAGAGAGTTGTTGCGGCAAG 59.763 55.000 16.97 0.00 0.00 4.01
2147 5715 2.462456 AATCTCTCTCGTGCTGCAAA 57.538 45.000 2.77 0.00 0.00 3.68
2158 5726 7.120432 GCCATGAAACTTTACAGAAATCTCTCT 59.880 37.037 0.00 0.00 0.00 3.10
2163 5731 5.095490 CCGCCATGAAACTTTACAGAAATC 58.905 41.667 0.00 0.00 0.00 2.17
2167 5735 3.410631 TCCGCCATGAAACTTTACAGA 57.589 42.857 0.00 0.00 0.00 3.41
2169 5737 3.252215 CAGTTCCGCCATGAAACTTTACA 59.748 43.478 0.00 0.00 0.00 2.41
2170 5738 3.500680 TCAGTTCCGCCATGAAACTTTAC 59.499 43.478 0.00 0.00 0.00 2.01
2171 5739 3.745799 TCAGTTCCGCCATGAAACTTTA 58.254 40.909 0.00 0.00 0.00 1.85
2173 5741 2.270352 TCAGTTCCGCCATGAAACTT 57.730 45.000 0.00 0.00 0.00 2.66
2174 5742 2.086869 CATCAGTTCCGCCATGAAACT 58.913 47.619 0.00 0.00 0.00 2.66
2177 5759 1.407299 CCTCATCAGTTCCGCCATGAA 60.407 52.381 0.00 0.00 0.00 2.57
2198 5785 0.250338 AGAACAGGGCGAAGGACAAC 60.250 55.000 0.00 0.00 0.00 3.32
2199 5786 0.472471 AAGAACAGGGCGAAGGACAA 59.528 50.000 0.00 0.00 0.00 3.18
2201 5788 0.034896 TCAAGAACAGGGCGAAGGAC 59.965 55.000 0.00 0.00 0.00 3.85
2203 5790 1.826385 AATCAAGAACAGGGCGAAGG 58.174 50.000 0.00 0.00 0.00 3.46
2209 5796 6.581712 TCCAAAAGAAAAATCAAGAACAGGG 58.418 36.000 0.00 0.00 0.00 4.45
2214 5801 8.649591 TCATGGATCCAAAAGAAAAATCAAGAA 58.350 29.630 20.67 0.00 0.00 2.52
2229 5816 9.699410 AGAAACTGTAAAATATCATGGATCCAA 57.301 29.630 20.67 2.92 0.00 3.53
2265 5861 6.290540 CGCGCAAACAGTAAAAATATCATCAC 60.291 38.462 8.75 0.00 0.00 3.06
2266 5862 5.736824 CGCGCAAACAGTAAAAATATCATCA 59.263 36.000 8.75 0.00 0.00 3.07
2267 5863 5.963004 TCGCGCAAACAGTAAAAATATCATC 59.037 36.000 8.75 0.00 0.00 2.92
2268 5864 5.874831 TCGCGCAAACAGTAAAAATATCAT 58.125 33.333 8.75 0.00 0.00 2.45
2269 5865 5.284428 TCGCGCAAACAGTAAAAATATCA 57.716 34.783 8.75 0.00 0.00 2.15
2270 5866 5.171337 CCATCGCGCAAACAGTAAAAATATC 59.829 40.000 8.75 0.00 0.00 1.63
2271 5867 5.034152 CCATCGCGCAAACAGTAAAAATAT 58.966 37.500 8.75 0.00 0.00 1.28
2273 5869 3.057876 TCCATCGCGCAAACAGTAAAAAT 60.058 39.130 8.75 0.00 0.00 1.82
2276 5872 1.195900 GTCCATCGCGCAAACAGTAAA 59.804 47.619 8.75 0.00 0.00 2.01
2277 5873 0.793861 GTCCATCGCGCAAACAGTAA 59.206 50.000 8.75 0.00 0.00 2.24
2279 5875 1.568612 CTGTCCATCGCGCAAACAGT 61.569 55.000 8.75 0.00 34.14 3.55
2280 5876 1.133253 CTGTCCATCGCGCAAACAG 59.867 57.895 8.75 8.75 0.00 3.16
2281 5877 2.965147 GCTGTCCATCGCGCAAACA 61.965 57.895 8.75 2.05 0.00 2.83
2282 5878 2.202349 GCTGTCCATCGCGCAAAC 60.202 61.111 8.75 0.00 0.00 2.93
2283 5879 3.787676 CGCTGTCCATCGCGCAAA 61.788 61.111 8.75 0.00 43.01 3.68
2288 5884 3.323136 CGCTACGCTGTCCATCGC 61.323 66.667 0.00 0.00 0.00 4.58
2292 5888 1.153647 CCAATCGCTACGCTGTCCA 60.154 57.895 0.00 0.00 0.00 4.02
2297 5893 1.299541 CAATTCCCAATCGCTACGCT 58.700 50.000 0.00 0.00 0.00 5.07
2301 5897 3.486383 GAATCCCAATTCCCAATCGCTA 58.514 45.455 0.00 0.00 36.12 4.26
2317 5913 0.691413 AAGAGGAGGACGGGGAATCC 60.691 60.000 0.00 0.00 36.38 3.01
2318 5914 0.753867 GAAGAGGAGGACGGGGAATC 59.246 60.000 0.00 0.00 0.00 2.52
2319 5915 0.042731 TGAAGAGGAGGACGGGGAAT 59.957 55.000 0.00 0.00 0.00 3.01
2320 5916 0.178915 TTGAAGAGGAGGACGGGGAA 60.179 55.000 0.00 0.00 0.00 3.97
2321 5917 0.903454 GTTGAAGAGGAGGACGGGGA 60.903 60.000 0.00 0.00 0.00 4.81
2322 5918 0.905337 AGTTGAAGAGGAGGACGGGG 60.905 60.000 0.00 0.00 0.00 5.73
2323 5919 0.977395 AAGTTGAAGAGGAGGACGGG 59.023 55.000 0.00 0.00 0.00 5.28
2324 5920 1.941668 GCAAGTTGAAGAGGAGGACGG 60.942 57.143 7.16 0.00 0.00 4.79
2325 5921 1.433534 GCAAGTTGAAGAGGAGGACG 58.566 55.000 7.16 0.00 0.00 4.79
2326 5922 1.433534 CGCAAGTTGAAGAGGAGGAC 58.566 55.000 7.16 0.00 0.00 3.85
2327 5923 0.320771 GCGCAAGTTGAAGAGGAGGA 60.321 55.000 7.16 0.00 41.68 3.71
2328 5924 0.603707 TGCGCAAGTTGAAGAGGAGG 60.604 55.000 8.16 0.00 41.68 4.30
2329 5925 1.196354 CTTGCGCAAGTTGAAGAGGAG 59.804 52.381 36.23 12.19 41.68 3.69
2330 5926 1.202639 TCTTGCGCAAGTTGAAGAGGA 60.203 47.619 40.37 21.59 39.38 3.71
2331 5927 1.229428 TCTTGCGCAAGTTGAAGAGG 58.771 50.000 40.37 19.75 39.38 3.69
2355 5951 3.181461 ACCGATCTCCCAACATCATCTTC 60.181 47.826 0.00 0.00 0.00 2.87
2356 5952 2.774234 ACCGATCTCCCAACATCATCTT 59.226 45.455 0.00 0.00 0.00 2.40
2357 5953 2.103771 CACCGATCTCCCAACATCATCT 59.896 50.000 0.00 0.00 0.00 2.90
2393 5989 8.708742 CGTACAACGTATGATCAATATTCCATT 58.291 33.333 0.00 0.00 36.74 3.16
2394 5990 8.085909 TCGTACAACGTATGATCAATATTCCAT 58.914 33.333 0.00 0.00 43.14 3.41
2395 5991 7.427214 TCGTACAACGTATGATCAATATTCCA 58.573 34.615 0.00 0.00 43.14 3.53
2396 5992 7.410513 GCTCGTACAACGTATGATCAATATTCC 60.411 40.741 0.00 0.00 43.14 3.01
2397 5993 7.114388 TGCTCGTACAACGTATGATCAATATTC 59.886 37.037 0.00 0.00 43.14 1.75
2398 5994 6.921307 TGCTCGTACAACGTATGATCAATATT 59.079 34.615 0.00 0.00 43.14 1.28
2399 5995 6.443792 TGCTCGTACAACGTATGATCAATAT 58.556 36.000 0.00 0.00 43.14 1.28
2400 5996 5.823353 TGCTCGTACAACGTATGATCAATA 58.177 37.500 0.00 0.00 43.14 1.90
2401 5997 4.678622 TGCTCGTACAACGTATGATCAAT 58.321 39.130 0.00 0.00 43.14 2.57
2402 5998 4.099380 TGCTCGTACAACGTATGATCAA 57.901 40.909 0.00 0.00 43.14 2.57
2403 5999 3.488553 CCTGCTCGTACAACGTATGATCA 60.489 47.826 0.00 0.00 43.14 2.92
2404 6000 3.043586 CCTGCTCGTACAACGTATGATC 58.956 50.000 0.00 0.00 43.14 2.92
2405 6001 2.426024 ACCTGCTCGTACAACGTATGAT 59.574 45.455 0.00 0.00 43.14 2.45
2406 6002 1.814394 ACCTGCTCGTACAACGTATGA 59.186 47.619 0.00 0.00 43.14 2.15
2407 6003 2.182825 GACCTGCTCGTACAACGTATG 58.817 52.381 0.00 0.00 43.14 2.39
2408 6004 1.814394 TGACCTGCTCGTACAACGTAT 59.186 47.619 0.00 0.00 43.14 3.06
2409 6005 1.237533 TGACCTGCTCGTACAACGTA 58.762 50.000 0.00 0.00 43.14 3.57
2410 6006 0.386476 TTGACCTGCTCGTACAACGT 59.614 50.000 0.00 0.00 43.14 3.99
2411 6007 0.782384 GTTGACCTGCTCGTACAACG 59.218 55.000 0.00 0.00 44.19 4.10
2412 6008 1.792949 CTGTTGACCTGCTCGTACAAC 59.207 52.381 0.00 0.00 40.44 3.32
2413 6009 1.684450 TCTGTTGACCTGCTCGTACAA 59.316 47.619 0.00 0.00 0.00 2.41
2414 6010 1.324383 TCTGTTGACCTGCTCGTACA 58.676 50.000 0.00 0.00 0.00 2.90
2415 6011 2.059541 GTTCTGTTGACCTGCTCGTAC 58.940 52.381 0.00 0.00 0.00 3.67
2416 6012 1.684450 TGTTCTGTTGACCTGCTCGTA 59.316 47.619 0.00 0.00 0.00 3.43
2417 6013 0.464036 TGTTCTGTTGACCTGCTCGT 59.536 50.000 0.00 0.00 0.00 4.18
2418 6014 0.861837 GTGTTCTGTTGACCTGCTCG 59.138 55.000 0.00 0.00 0.00 5.03
2419 6015 1.953559 TGTGTTCTGTTGACCTGCTC 58.046 50.000 0.00 0.00 0.00 4.26
2420 6016 2.224606 CATGTGTTCTGTTGACCTGCT 58.775 47.619 0.00 0.00 0.00 4.24
2421 6017 1.335324 GCATGTGTTCTGTTGACCTGC 60.335 52.381 0.00 0.00 0.00 4.85
2422 6018 1.948834 TGCATGTGTTCTGTTGACCTG 59.051 47.619 0.00 0.00 0.00 4.00
2423 6019 2.346766 TGCATGTGTTCTGTTGACCT 57.653 45.000 0.00 0.00 0.00 3.85
2424 6020 2.553602 TCATGCATGTGTTCTGTTGACC 59.446 45.455 25.43 0.00 0.00 4.02
2425 6021 3.558505 GTCATGCATGTGTTCTGTTGAC 58.441 45.455 25.43 10.06 0.00 3.18
2426 6022 2.553602 GGTCATGCATGTGTTCTGTTGA 59.446 45.455 25.43 0.54 0.00 3.18
2427 6023 2.352030 GGGTCATGCATGTGTTCTGTTG 60.352 50.000 25.43 0.00 0.00 3.33
2428 6024 1.888512 GGGTCATGCATGTGTTCTGTT 59.111 47.619 25.43 0.00 0.00 3.16
2429 6025 1.538047 GGGTCATGCATGTGTTCTGT 58.462 50.000 25.43 0.00 0.00 3.41
2430 6026 0.448990 CGGGTCATGCATGTGTTCTG 59.551 55.000 25.43 14.11 0.00 3.02
2431 6027 0.036732 ACGGGTCATGCATGTGTTCT 59.963 50.000 25.43 5.00 0.00 3.01
2432 6028 0.447801 GACGGGTCATGCATGTGTTC 59.552 55.000 25.43 14.08 0.00 3.18
2433 6029 1.298157 CGACGGGTCATGCATGTGTT 61.298 55.000 25.43 7.56 0.00 3.32
2434 6030 1.741401 CGACGGGTCATGCATGTGT 60.741 57.895 25.43 18.66 0.00 3.72
2435 6031 1.018752 TTCGACGGGTCATGCATGTG 61.019 55.000 25.43 15.88 0.00 3.21
2436 6032 0.321210 TTTCGACGGGTCATGCATGT 60.321 50.000 25.43 6.51 0.00 3.21
2437 6033 1.016627 ATTTCGACGGGTCATGCATG 58.983 50.000 21.07 21.07 0.00 4.06
2438 6034 1.750193 AATTTCGACGGGTCATGCAT 58.250 45.000 0.00 0.00 0.00 3.96
2439 6035 2.004017 GTAATTTCGACGGGTCATGCA 58.996 47.619 0.00 0.00 0.00 3.96
2440 6036 2.277084 AGTAATTTCGACGGGTCATGC 58.723 47.619 0.00 0.00 0.00 4.06
2441 6037 3.930229 TCAAGTAATTTCGACGGGTCATG 59.070 43.478 0.00 0.00 0.00 3.07
2442 6038 4.196626 TCAAGTAATTTCGACGGGTCAT 57.803 40.909 0.00 0.00 0.00 3.06
2443 6039 3.663995 TCAAGTAATTTCGACGGGTCA 57.336 42.857 0.00 0.00 0.00 4.02
2444 6040 3.242248 CGATCAAGTAATTTCGACGGGTC 59.758 47.826 0.00 0.00 33.59 4.46
2445 6041 3.184541 CGATCAAGTAATTTCGACGGGT 58.815 45.455 0.00 0.00 33.59 5.28
2446 6042 2.034001 GCGATCAAGTAATTTCGACGGG 60.034 50.000 1.49 0.00 33.59 5.28
2447 6043 2.346376 CGCGATCAAGTAATTTCGACGG 60.346 50.000 0.00 0.00 33.59 4.79
2448 6044 2.528688 TCGCGATCAAGTAATTTCGACG 59.471 45.455 3.71 4.87 33.59 5.12
2449 6045 3.302434 TGTCGCGATCAAGTAATTTCGAC 59.698 43.478 14.06 0.00 43.44 4.20
2450 6046 3.503891 TGTCGCGATCAAGTAATTTCGA 58.496 40.909 14.06 0.00 33.59 3.71
2451 6047 3.899835 TGTCGCGATCAAGTAATTTCG 57.100 42.857 14.06 0.00 34.83 3.46
2452 6048 5.643339 AGATGTCGCGATCAAGTAATTTC 57.357 39.130 14.06 5.24 0.00 2.17
2453 6049 6.346919 GCATAGATGTCGCGATCAAGTAATTT 60.347 38.462 14.06 0.00 0.00 1.82
2454 6050 5.119279 GCATAGATGTCGCGATCAAGTAATT 59.881 40.000 14.06 0.00 0.00 1.40
2455 6051 4.623167 GCATAGATGTCGCGATCAAGTAAT 59.377 41.667 14.06 0.00 0.00 1.89
2456 6052 3.981416 GCATAGATGTCGCGATCAAGTAA 59.019 43.478 14.06 0.00 0.00 2.24
2457 6053 3.253432 AGCATAGATGTCGCGATCAAGTA 59.747 43.478 14.06 8.62 0.00 2.24
2458 6054 2.035193 AGCATAGATGTCGCGATCAAGT 59.965 45.455 14.06 6.72 0.00 3.16
2459 6055 2.660715 GAGCATAGATGTCGCGATCAAG 59.339 50.000 14.06 1.97 0.00 3.02
2460 6056 2.608016 GGAGCATAGATGTCGCGATCAA 60.608 50.000 14.06 0.99 0.00 2.57
2461 6057 1.068264 GGAGCATAGATGTCGCGATCA 60.068 52.381 14.06 13.11 0.00 2.92
2462 6058 1.623359 GGAGCATAGATGTCGCGATC 58.377 55.000 14.06 6.89 0.00 3.69
2463 6059 0.244994 GGGAGCATAGATGTCGCGAT 59.755 55.000 14.06 0.00 0.00 4.58
2464 6060 1.660355 GGGAGCATAGATGTCGCGA 59.340 57.895 3.71 3.71 0.00 5.87
2465 6061 1.373497 GGGGAGCATAGATGTCGCG 60.373 63.158 0.00 0.00 0.00 5.87
2466 6062 0.601311 GTGGGGAGCATAGATGTCGC 60.601 60.000 0.00 0.00 0.00 5.19
2467 6063 0.034059 GGTGGGGAGCATAGATGTCG 59.966 60.000 0.00 0.00 0.00 4.35
2468 6064 0.034059 CGGTGGGGAGCATAGATGTC 59.966 60.000 0.00 0.00 0.00 3.06
2469 6065 0.398522 TCGGTGGGGAGCATAGATGT 60.399 55.000 0.00 0.00 0.00 3.06
2470 6066 0.319728 CTCGGTGGGGAGCATAGATG 59.680 60.000 0.00 0.00 0.00 2.90
2471 6067 2.751991 CTCGGTGGGGAGCATAGAT 58.248 57.895 0.00 0.00 0.00 1.98
2472 6068 4.277552 CTCGGTGGGGAGCATAGA 57.722 61.111 0.00 0.00 0.00 1.98
2483 6079 4.778415 CTCGGACGGTGCTCGGTG 62.778 72.222 3.52 0.00 44.45 4.94
2520 6116 1.687494 GAGTCCGATTGTGCGTCTGC 61.687 60.000 0.00 0.00 43.20 4.26
2521 6117 1.406219 CGAGTCCGATTGTGCGTCTG 61.406 60.000 0.00 0.00 38.22 3.51
2522 6118 1.154016 CGAGTCCGATTGTGCGTCT 60.154 57.895 0.00 0.00 38.22 4.18
2523 6119 1.154093 TCGAGTCCGATTGTGCGTC 60.154 57.895 0.00 0.00 40.30 5.19
2524 6120 2.959372 TCGAGTCCGATTGTGCGT 59.041 55.556 0.00 0.00 40.30 5.24
2534 6130 1.214853 GAACCCTTCGGTCGAGTCC 59.785 63.158 0.00 0.00 43.71 3.85
2535 6131 4.885157 GAACCCTTCGGTCGAGTC 57.115 61.111 0.00 0.00 43.71 3.36
2544 6140 3.003480 CTGACCTTCATTCGAACCCTTC 58.997 50.000 0.00 0.00 0.00 3.46
2545 6141 2.372172 ACTGACCTTCATTCGAACCCTT 59.628 45.455 0.00 0.00 0.00 3.95
2546 6142 1.978580 ACTGACCTTCATTCGAACCCT 59.021 47.619 0.00 0.00 0.00 4.34
2547 6143 2.028020 AGACTGACCTTCATTCGAACCC 60.028 50.000 0.00 0.00 32.15 4.11
2548 6144 3.056465 AGAGACTGACCTTCATTCGAACC 60.056 47.826 0.00 0.00 32.15 3.62
2549 6145 4.082463 AGAGAGACTGACCTTCATTCGAAC 60.082 45.833 0.00 0.00 32.15 3.95
2550 6146 4.082845 AGAGAGACTGACCTTCATTCGAA 58.917 43.478 0.00 0.00 32.15 3.71
2551 6147 3.691575 AGAGAGACTGACCTTCATTCGA 58.308 45.455 0.00 0.00 32.15 3.71
2552 6148 4.172505 CAAGAGAGACTGACCTTCATTCG 58.827 47.826 0.00 0.00 32.15 3.34
2553 6149 4.502962 CCAAGAGAGACTGACCTTCATTC 58.497 47.826 0.00 0.00 0.00 2.67
2554 6150 3.307339 GCCAAGAGAGACTGACCTTCATT 60.307 47.826 0.00 0.00 0.00 2.57
2555 6151 2.235898 GCCAAGAGAGACTGACCTTCAT 59.764 50.000 0.00 0.00 0.00 2.57
2556 6152 1.620819 GCCAAGAGAGACTGACCTTCA 59.379 52.381 0.00 0.00 0.00 3.02
2557 6153 1.620819 TGCCAAGAGAGACTGACCTTC 59.379 52.381 0.00 0.00 0.00 3.46
2558 6154 1.346068 GTGCCAAGAGAGACTGACCTT 59.654 52.381 0.00 0.00 0.00 3.50
2559 6155 0.972883 GTGCCAAGAGAGACTGACCT 59.027 55.000 0.00 0.00 0.00 3.85
2560 6156 0.972883 AGTGCCAAGAGAGACTGACC 59.027 55.000 0.00 0.00 0.00 4.02
2561 6157 1.615883 TCAGTGCCAAGAGAGACTGAC 59.384 52.381 0.00 0.00 39.86 3.51
2562 6158 1.615883 GTCAGTGCCAAGAGAGACTGA 59.384 52.381 0.00 0.00 41.93 3.41
2563 6159 1.342496 TGTCAGTGCCAAGAGAGACTG 59.658 52.381 0.00 0.00 37.72 3.51
2564 6160 1.342819 GTGTCAGTGCCAAGAGAGACT 59.657 52.381 0.00 0.00 0.00 3.24
2565 6161 1.789506 GTGTCAGTGCCAAGAGAGAC 58.210 55.000 0.00 0.00 0.00 3.36
2566 6162 0.315251 CGTGTCAGTGCCAAGAGAGA 59.685 55.000 0.00 0.00 0.00 3.10
2567 6163 0.315251 TCGTGTCAGTGCCAAGAGAG 59.685 55.000 0.00 0.00 0.00 3.20
2568 6164 0.032130 GTCGTGTCAGTGCCAAGAGA 59.968 55.000 0.00 0.00 0.00 3.10
2569 6165 0.249447 TGTCGTGTCAGTGCCAAGAG 60.249 55.000 0.00 0.00 0.00 2.85
2570 6166 0.392706 ATGTCGTGTCAGTGCCAAGA 59.607 50.000 0.00 0.00 0.00 3.02
2571 6167 0.514255 CATGTCGTGTCAGTGCCAAG 59.486 55.000 0.00 0.00 0.00 3.61
2572 6168 0.105778 TCATGTCGTGTCAGTGCCAA 59.894 50.000 0.00 0.00 0.00 4.52
2573 6169 0.321346 ATCATGTCGTGTCAGTGCCA 59.679 50.000 0.00 0.00 0.00 4.92
2574 6170 1.129251 CAATCATGTCGTGTCAGTGCC 59.871 52.381 0.00 0.00 0.00 5.01
2575 6171 1.129251 CCAATCATGTCGTGTCAGTGC 59.871 52.381 0.00 0.00 0.00 4.40
2576 6172 1.129251 GCCAATCATGTCGTGTCAGTG 59.871 52.381 0.00 0.00 0.00 3.66
2577 6173 1.442769 GCCAATCATGTCGTGTCAGT 58.557 50.000 0.00 0.00 0.00 3.41
2578 6174 0.729116 GGCCAATCATGTCGTGTCAG 59.271 55.000 0.00 0.00 0.00 3.51
2579 6175 0.036022 TGGCCAATCATGTCGTGTCA 59.964 50.000 0.61 0.00 0.00 3.58
2580 6176 1.164411 TTGGCCAATCATGTCGTGTC 58.836 50.000 16.05 0.00 0.00 3.67
2581 6177 1.269448 GTTTGGCCAATCATGTCGTGT 59.731 47.619 21.26 0.00 0.00 4.49
2582 6178 1.728825 CGTTTGGCCAATCATGTCGTG 60.729 52.381 21.26 0.00 0.00 4.35
2583 6179 0.521291 CGTTTGGCCAATCATGTCGT 59.479 50.000 21.26 0.00 0.00 4.34
2584 6180 0.798009 GCGTTTGGCCAATCATGTCG 60.798 55.000 21.26 16.83 34.80 4.35
2585 6181 3.034569 GCGTTTGGCCAATCATGTC 57.965 52.632 21.26 3.76 34.80 3.06
2597 6193 3.039202 GATCGTGCCCTGGCGTTTG 62.039 63.158 3.32 0.00 45.51 2.93
2598 6194 2.746277 GATCGTGCCCTGGCGTTT 60.746 61.111 3.32 0.00 45.51 3.60
2602 6198 4.148825 ACTCGATCGTGCCCTGGC 62.149 66.667 15.94 0.00 42.35 4.85
2603 6199 2.105128 GACTCGATCGTGCCCTGG 59.895 66.667 15.94 0.00 0.00 4.45
2604 6200 1.226802 CTGACTCGATCGTGCCCTG 60.227 63.158 15.94 8.49 0.00 4.45
2605 6201 1.679305 ACTGACTCGATCGTGCCCT 60.679 57.895 15.94 0.00 0.00 5.19
2606 6202 1.517257 CACTGACTCGATCGTGCCC 60.517 63.158 15.94 8.88 0.00 5.36
2607 6203 2.161486 GCACTGACTCGATCGTGCC 61.161 63.158 15.94 5.70 44.77 5.01
2608 6204 3.378552 GCACTGACTCGATCGTGC 58.621 61.111 15.94 12.54 44.53 5.34
2609 6205 0.387239 TGTGCACTGACTCGATCGTG 60.387 55.000 19.41 15.53 35.93 4.35
2610 6206 0.109551 CTGTGCACTGACTCGATCGT 60.110 55.000 19.41 0.00 0.00 3.73
2611 6207 1.409227 GCTGTGCACTGACTCGATCG 61.409 60.000 25.94 9.36 0.00 3.69
2612 6208 1.080995 GGCTGTGCACTGACTCGATC 61.081 60.000 25.94 7.23 0.00 3.69
2613 6209 1.079543 GGCTGTGCACTGACTCGAT 60.080 57.895 25.94 0.00 0.00 3.59
2614 6210 2.340078 GGCTGTGCACTGACTCGA 59.660 61.111 25.94 0.00 0.00 4.04
2615 6211 2.029518 TGGCTGTGCACTGACTCG 59.970 61.111 27.37 6.77 0.00 4.18
2616 6212 0.948141 GAGTGGCTGTGCACTGACTC 60.948 60.000 27.37 24.09 0.00 3.36
2617 6213 1.070445 GAGTGGCTGTGCACTGACT 59.930 57.895 27.37 20.93 0.00 3.41
2618 6214 2.313172 CGAGTGGCTGTGCACTGAC 61.313 63.158 25.94 23.92 0.00 3.51
2619 6215 2.029518 CGAGTGGCTGTGCACTGA 59.970 61.111 25.94 4.49 0.00 3.41
2620 6216 3.046087 CCGAGTGGCTGTGCACTG 61.046 66.667 19.41 18.94 0.00 3.66
2621 6217 4.320456 CCCGAGTGGCTGTGCACT 62.320 66.667 19.41 0.00 0.00 4.40
2630 6226 3.668386 GGTTTTCTGCCCGAGTGG 58.332 61.111 0.00 0.00 37.09 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.