Multiple sequence alignment - TraesCS6D01G348200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G348200 chr6D 100.000 2342 0 0 1 2342 446476232 446478573 0.000000e+00 4325.0
1 TraesCS6D01G348200 chr6D 97.010 301 9 0 1 301 51870853 51871153 7.470000e-140 507.0
2 TraesCS6D01G348200 chr6D 97.288 295 8 0 1 295 77882506 77882800 3.470000e-138 501.0
3 TraesCS6D01G348200 chr6D 92.073 164 11 2 1935 2097 467802432 467802270 1.810000e-56 230.0
4 TraesCS6D01G348200 chr6D 81.061 132 13 5 1805 1936 446463136 446463255 6.890000e-16 95.3
5 TraesCS6D01G348200 chr6A 92.628 1655 91 14 295 1933 593283917 593285556 0.000000e+00 2351.0
6 TraesCS6D01G348200 chr6A 90.042 1667 120 23 295 1935 593234721 593236367 0.000000e+00 2117.0
7 TraesCS6D01G348200 chr6A 92.111 862 48 7 797 1657 593237253 593238095 0.000000e+00 1197.0
8 TraesCS6D01G348200 chr6A 84.526 685 82 15 505 1177 593297060 593297732 0.000000e+00 656.0
9 TraesCS6D01G348200 chr6A 90.637 502 19 8 299 799 593236656 593237130 1.960000e-180 641.0
10 TraesCS6D01G348200 chr6A 91.270 252 21 1 2092 2342 593238780 593239031 2.230000e-90 342.0
11 TraesCS6D01G348200 chr6A 92.105 152 11 1 1786 1936 593238633 593238784 1.820000e-51 213.0
12 TraesCS6D01G348200 chr6A 75.057 437 61 27 1208 1610 593233228 593233650 2.410000e-35 159.0
13 TraesCS6D01G348200 chr6A 80.537 149 14 9 1786 1932 593234219 593234354 1.480000e-17 100.0
14 TraesCS6D01G348200 chrUn 91.460 1370 91 9 295 1657 79304792 79306142 0.000000e+00 1858.0
15 TraesCS6D01G348200 chrUn 91.460 1370 90 10 295 1657 79273128 79274477 0.000000e+00 1857.0
16 TraesCS6D01G348200 chrUn 91.555 1267 85 8 394 1657 79246569 79247816 0.000000e+00 1727.0
17 TraesCS6D01G348200 chrUn 90.255 431 28 4 1227 1657 79240016 79240432 3.400000e-153 551.0
18 TraesCS6D01G348200 chrUn 86.992 123 10 3 283 400 79246361 79246482 1.460000e-27 134.0
19 TraesCS6D01G348200 chr6B 91.088 1369 86 14 299 1657 674841859 674843201 0.000000e+00 1820.0
20 TraesCS6D01G348200 chr6B 92.216 835 57 4 394 1225 674927355 674928184 0.000000e+00 1175.0
21 TraesCS6D01G348200 chr6B 82.687 670 82 17 489 1156 674918497 674919134 4.370000e-157 564.0
22 TraesCS6D01G348200 chr6B 90.909 176 12 1 2167 2342 674929156 674929327 1.400000e-57 233.0
23 TraesCS6D01G348200 chr6B 91.304 115 9 1 1786 1899 674843491 674843605 3.120000e-34 156.0
24 TraesCS6D01G348200 chr6B 86.992 123 10 3 283 400 674927147 674927268 1.460000e-27 134.0
25 TraesCS6D01G348200 chr6B 79.592 147 16 8 1791 1936 674841432 674841565 2.480000e-15 93.5
26 TraesCS6D01G348200 chr6B 93.750 48 3 0 1888 1935 674843643 674843690 3.230000e-09 73.1
27 TraesCS6D01G348200 chr7D 97.306 297 8 0 1 297 67684478 67684182 2.690000e-139 505.0
28 TraesCS6D01G348200 chr7D 95.793 309 12 1 1 309 21310716 21310409 4.490000e-137 497.0
29 TraesCS6D01G348200 chr7D 92.262 168 10 3 1934 2100 382733643 382733808 3.890000e-58 235.0
30 TraesCS6D01G348200 chr2D 97.297 296 8 0 1 296 604115277 604114982 9.660000e-139 503.0
31 TraesCS6D01G348200 chr2D 98.225 169 3 0 1928 2096 459301806 459301974 1.760000e-76 296.0
32 TraesCS6D01G348200 chr5B 97.288 295 8 0 1 295 633317523 633317229 3.470000e-138 501.0
33 TraesCS6D01G348200 chr1D 97.288 295 8 0 1 295 33824426 33824720 3.470000e-138 501.0
34 TraesCS6D01G348200 chr1D 97.288 295 8 0 1 295 428222632 428222338 3.470000e-138 501.0
35 TraesCS6D01G348200 chr1D 96.346 301 11 0 1 301 45630636 45630336 1.620000e-136 496.0
36 TraesCS6D01G348200 chr3A 91.515 165 12 2 1934 2097 600920854 600921017 2.340000e-55 226.0
37 TraesCS6D01G348200 chr7B 89.385 179 17 2 1927 2104 460995598 460995775 8.420000e-55 224.0
38 TraesCS6D01G348200 chr4D 91.018 167 13 2 1932 2097 36603044 36603209 8.420000e-55 224.0
39 TraesCS6D01G348200 chr4D 90.419 167 14 2 1933 2098 117421354 117421189 3.920000e-53 219.0
40 TraesCS6D01G348200 chr5A 88.827 179 15 5 1933 2109 422444467 422444292 5.070000e-52 215.0
41 TraesCS6D01G348200 chr3D 88.268 179 16 5 1933 2109 338164422 338164247 2.360000e-50 209.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G348200 chr6D 446476232 446478573 2341 False 4325.000000 4325 100.000000 1 2342 1 chr6D.!!$F4 2341
1 TraesCS6D01G348200 chr6A 593283917 593285556 1639 False 2351.000000 2351 92.628000 295 1933 1 chr6A.!!$F1 1638
2 TraesCS6D01G348200 chr6A 593233228 593239031 5803 False 681.285714 2117 87.394143 295 2342 7 chr6A.!!$F3 2047
3 TraesCS6D01G348200 chr6A 593297060 593297732 672 False 656.000000 656 84.526000 505 1177 1 chr6A.!!$F2 672
4 TraesCS6D01G348200 chrUn 79304792 79306142 1350 False 1858.000000 1858 91.460000 295 1657 1 chrUn.!!$F3 1362
5 TraesCS6D01G348200 chrUn 79273128 79274477 1349 False 1857.000000 1857 91.460000 295 1657 1 chrUn.!!$F2 1362
6 TraesCS6D01G348200 chrUn 79246361 79247816 1455 False 930.500000 1727 89.273500 283 1657 2 chrUn.!!$F4 1374
7 TraesCS6D01G348200 chr6B 674918497 674919134 637 False 564.000000 564 82.687000 489 1156 1 chr6B.!!$F1 667
8 TraesCS6D01G348200 chr6B 674841432 674843690 2258 False 535.650000 1820 88.933500 299 1936 4 chr6B.!!$F2 1637
9 TraesCS6D01G348200 chr6B 674927147 674929327 2180 False 514.000000 1175 90.039000 283 2342 3 chr6B.!!$F3 2059

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
22 23 0.030603 AAAAACCCCAGCCCCTGAAA 60.031 50.0 0.0 0.0 32.44 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1731 5984 0.03601 GACTGGCACATGCACCTACT 60.036 55.0 6.15 0.0 44.36 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.316617 AACAAAAACCCCAGCCCCT 59.683 52.632 0.00 0.00 0.00 4.79
19 20 1.053835 AACAAAAACCCCAGCCCCTG 61.054 55.000 0.00 0.00 0.00 4.45
20 21 1.152355 CAAAAACCCCAGCCCCTGA 60.152 57.895 0.00 0.00 32.44 3.86
22 23 0.030603 AAAAACCCCAGCCCCTGAAA 60.031 50.000 0.00 0.00 32.44 2.69
23 24 0.193321 AAAACCCCAGCCCCTGAAAT 59.807 50.000 0.00 0.00 32.44 2.17
24 25 0.545071 AAACCCCAGCCCCTGAAATG 60.545 55.000 0.00 0.00 32.44 2.32
25 26 2.761213 CCCCAGCCCCTGAAATGC 60.761 66.667 0.00 0.00 32.44 3.56
26 27 2.361771 CCCAGCCCCTGAAATGCT 59.638 61.111 0.00 0.00 32.44 3.79
29 30 4.751431 AGCCCCTGAAATGCTGAC 57.249 55.556 0.00 0.00 33.23 3.51
30 31 1.377725 AGCCCCTGAAATGCTGACG 60.378 57.895 0.00 0.00 33.23 4.35
31 32 3.056313 GCCCCTGAAATGCTGACGC 62.056 63.158 0.00 0.00 0.00 5.19
32 33 2.753966 CCCCTGAAATGCTGACGCG 61.754 63.158 3.53 3.53 39.65 6.01
33 34 2.034879 CCCTGAAATGCTGACGCGT 61.035 57.895 13.85 13.85 39.65 6.01
34 35 1.133253 CCTGAAATGCTGACGCGTG 59.867 57.895 20.70 3.71 39.65 5.34
36 37 1.291184 CTGAAATGCTGACGCGTGGA 61.291 55.000 20.70 4.37 39.65 4.02
37 38 0.673333 TGAAATGCTGACGCGTGGAT 60.673 50.000 20.70 7.22 39.65 3.41
38 39 0.247814 GAAATGCTGACGCGTGGATG 60.248 55.000 20.70 4.59 39.65 3.51
39 40 2.257286 AAATGCTGACGCGTGGATGC 62.257 55.000 20.70 15.70 39.65 3.91
42 43 2.494445 CTGACGCGTGGATGCCTA 59.506 61.111 20.70 0.00 0.00 3.93
43 44 1.068083 CTGACGCGTGGATGCCTAT 59.932 57.895 20.70 0.00 0.00 2.57
45 46 2.016704 GACGCGTGGATGCCTATCG 61.017 63.158 20.70 0.00 33.98 2.92
46 47 2.734723 CGCGTGGATGCCTATCGG 60.735 66.667 0.00 0.00 33.98 4.18
47 48 2.421739 GCGTGGATGCCTATCGGT 59.578 61.111 0.00 0.00 33.98 4.69
48 49 1.664965 GCGTGGATGCCTATCGGTC 60.665 63.158 0.00 0.00 33.98 4.79
49 50 1.006102 CGTGGATGCCTATCGGTCC 60.006 63.158 0.00 0.00 33.98 4.46
50 51 1.371558 GTGGATGCCTATCGGTCCC 59.628 63.158 0.00 0.00 33.98 4.46
52 53 2.657237 GATGCCTATCGGTCCCGG 59.343 66.667 5.80 0.00 40.25 5.73
53 54 2.122989 ATGCCTATCGGTCCCGGT 60.123 61.111 5.80 0.36 40.25 5.28
54 55 1.755393 GATGCCTATCGGTCCCGGTT 61.755 60.000 5.80 0.00 40.25 4.44
55 56 2.040009 ATGCCTATCGGTCCCGGTTG 62.040 60.000 5.80 0.00 40.25 3.77
56 57 2.819550 CCTATCGGTCCCGGTTGG 59.180 66.667 5.11 5.11 38.83 3.77
57 58 2.062177 CCTATCGGTCCCGGTTGGT 61.062 63.158 10.76 0.00 39.80 3.67
59 60 1.305129 TATCGGTCCCGGTTGGTGA 60.305 57.895 5.80 0.00 40.25 4.02
60 61 1.606885 TATCGGTCCCGGTTGGTGAC 61.607 60.000 5.80 0.00 40.25 3.67
61 62 3.931247 CGGTCCCGGTTGGTGACA 61.931 66.667 0.00 0.00 37.25 3.58
62 63 2.281276 GGTCCCGGTTGGTGACAC 60.281 66.667 0.00 0.00 42.67 3.67
63 64 2.281276 GTCCCGGTTGGTGACACC 60.281 66.667 18.28 18.28 42.67 4.16
72 73 2.281276 GGTGACACCAACCGGGAC 60.281 66.667 20.14 0.00 38.42 4.46
74 75 1.153127 GTGACACCAACCGGGACAA 60.153 57.895 6.32 0.00 41.15 3.18
76 77 0.034380 TGACACCAACCGGGACAAAA 60.034 50.000 6.32 0.00 41.15 2.44
78 79 0.753848 ACACCAACCGGGACAAAAGG 60.754 55.000 6.32 0.00 41.15 3.11
80 81 2.570284 CCAACCGGGACAAAAGGCC 61.570 63.158 6.32 0.00 40.01 5.19
81 82 2.203582 AACCGGGACAAAAGGCCC 60.204 61.111 6.32 0.00 41.11 5.80
82 83 2.774633 AACCGGGACAAAAGGCCCT 61.775 57.895 6.32 0.00 42.40 5.19
84 85 2.676471 CGGGACAAAAGGCCCTGG 60.676 66.667 4.64 0.00 42.40 4.45
85 86 2.997315 GGGACAAAAGGCCCTGGC 60.997 66.667 0.00 0.00 41.31 4.85
86 87 2.118294 GGACAAAAGGCCCTGGCT 59.882 61.111 8.29 0.00 41.24 4.75
87 88 1.382629 GGACAAAAGGCCCTGGCTA 59.617 57.895 8.29 0.00 37.50 3.93
88 89 0.033109 GGACAAAAGGCCCTGGCTAT 60.033 55.000 8.29 0.00 37.50 2.97
91 92 0.826062 CAAAAGGCCCTGGCTATTGG 59.174 55.000 8.29 0.00 37.50 3.16
92 93 0.413434 AAAAGGCCCTGGCTATTGGT 59.587 50.000 8.29 0.00 37.50 3.67
93 94 0.033109 AAAGGCCCTGGCTATTGGTC 60.033 55.000 8.29 0.00 37.50 4.02
94 95 1.937924 AAGGCCCTGGCTATTGGTCC 61.938 60.000 8.29 0.00 37.50 4.46
96 97 2.510906 CCCTGGCTATTGGTCCCG 59.489 66.667 0.00 0.00 0.00 5.14
97 98 2.510906 CCTGGCTATTGGTCCCGG 59.489 66.667 0.00 0.00 0.00 5.73
98 99 2.375345 CCTGGCTATTGGTCCCGGT 61.375 63.158 0.00 0.00 0.00 5.28
100 101 0.748005 CTGGCTATTGGTCCCGGTTG 60.748 60.000 0.00 0.00 0.00 3.77
101 102 1.453197 GGCTATTGGTCCCGGTTGG 60.453 63.158 0.00 0.00 0.00 3.77
102 103 1.301954 GCTATTGGTCCCGGTTGGT 59.698 57.895 0.00 0.00 34.77 3.67
104 105 0.393808 CTATTGGTCCCGGTTGGTGG 60.394 60.000 0.00 0.00 34.77 4.61
121 122 3.680156 GCACCAAGCGGGATCAAA 58.320 55.556 4.35 0.00 41.15 2.69
122 123 1.508088 GCACCAAGCGGGATCAAAG 59.492 57.895 4.35 0.00 41.15 2.77
124 125 0.804989 CACCAAGCGGGATCAAAGAC 59.195 55.000 4.35 0.00 41.15 3.01
125 126 0.322546 ACCAAGCGGGATCAAAGACC 60.323 55.000 4.35 0.00 41.15 3.85
127 128 1.032114 CAAGCGGGATCAAAGACCCC 61.032 60.000 0.00 0.00 42.86 4.95
160 161 4.790962 AGCAGCGGCCACATGGAG 62.791 66.667 4.82 0.00 42.56 3.86
162 163 4.100084 CAGCGGCCACATGGAGGA 62.100 66.667 2.24 0.00 37.39 3.71
163 164 4.101448 AGCGGCCACATGGAGGAC 62.101 66.667 2.24 6.45 37.39 3.85
166 167 2.971598 CGGCCACATGGAGGACCTT 61.972 63.158 2.24 0.00 37.39 3.50
167 168 1.077429 GGCCACATGGAGGACCTTC 60.077 63.158 10.35 0.00 37.39 3.46
168 169 1.566298 GGCCACATGGAGGACCTTCT 61.566 60.000 10.35 0.00 37.39 2.85
169 170 0.393537 GCCACATGGAGGACCTTCTG 60.394 60.000 10.35 0.00 37.39 3.02
171 172 1.065854 CCACATGGAGGACCTTCTGTC 60.066 57.143 0.25 0.00 39.46 3.51
179 180 1.080025 GACCTTCTGTCCCGGTTCG 60.080 63.158 0.00 0.00 38.09 3.95
180 181 1.813728 GACCTTCTGTCCCGGTTCGT 61.814 60.000 0.00 0.00 38.09 3.85
181 182 1.374252 CCTTCTGTCCCGGTTCGTG 60.374 63.158 0.00 0.00 0.00 4.35
183 184 0.599558 CTTCTGTCCCGGTTCGTGTA 59.400 55.000 0.00 0.00 0.00 2.90
184 185 1.000060 CTTCTGTCCCGGTTCGTGTAA 60.000 52.381 0.00 0.00 0.00 2.41
185 186 0.599558 TCTGTCCCGGTTCGTGTAAG 59.400 55.000 0.00 0.00 0.00 2.34
186 187 0.599558 CTGTCCCGGTTCGTGTAAGA 59.400 55.000 0.00 0.00 0.00 2.10
187 188 1.000060 CTGTCCCGGTTCGTGTAAGAA 60.000 52.381 0.00 0.00 0.00 2.52
193 194 3.892200 GTTCGTGTAAGAACCGGGA 57.108 52.632 6.32 0.00 43.33 5.14
194 195 1.422388 GTTCGTGTAAGAACCGGGAC 58.578 55.000 6.32 0.00 43.33 4.46
195 196 1.000171 GTTCGTGTAAGAACCGGGACT 60.000 52.381 6.32 0.73 43.33 3.85
196 197 2.198827 TCGTGTAAGAACCGGGACTA 57.801 50.000 6.32 0.00 0.00 2.59
198 199 2.890311 TCGTGTAAGAACCGGGACTAAA 59.110 45.455 6.32 0.00 0.00 1.85
199 200 3.057315 TCGTGTAAGAACCGGGACTAAAG 60.057 47.826 6.32 0.00 0.00 1.85
200 201 3.593096 GTGTAAGAACCGGGACTAAAGG 58.407 50.000 6.32 0.00 0.00 3.11
201 202 2.568509 TGTAAGAACCGGGACTAAAGGG 59.431 50.000 6.32 0.00 0.00 3.95
202 203 1.738474 AAGAACCGGGACTAAAGGGT 58.262 50.000 6.32 0.00 0.00 4.34
203 204 1.738474 AGAACCGGGACTAAAGGGTT 58.262 50.000 6.32 0.00 45.02 4.11
206 207 1.576577 ACCGGGACTAAAGGGTTAGG 58.423 55.000 6.32 0.00 41.03 2.69
207 208 0.835276 CCGGGACTAAAGGGTTAGGG 59.165 60.000 0.00 0.00 41.03 3.53
208 209 0.179702 CGGGACTAAAGGGTTAGGGC 59.820 60.000 0.00 0.00 41.03 5.19
211 212 2.310945 GGGACTAAAGGGTTAGGGCTTT 59.689 50.000 0.00 0.00 41.03 3.51
212 213 3.524789 GGGACTAAAGGGTTAGGGCTTTA 59.475 47.826 0.00 0.00 41.03 1.85
213 214 4.384978 GGGACTAAAGGGTTAGGGCTTTAG 60.385 50.000 1.97 1.97 41.03 1.85
215 216 5.426509 GGACTAAAGGGTTAGGGCTTTAGTA 59.573 44.000 6.31 0.00 46.28 1.82
216 217 6.070021 GGACTAAAGGGTTAGGGCTTTAGTAA 60.070 42.308 6.31 0.00 46.28 2.24
217 218 6.715280 ACTAAAGGGTTAGGGCTTTAGTAAC 58.285 40.000 5.23 0.00 45.23 2.50
219 220 3.444029 AGGGTTAGGGCTTTAGTAACGA 58.556 45.455 0.00 0.00 0.00 3.85
220 221 3.196469 AGGGTTAGGGCTTTAGTAACGAC 59.804 47.826 0.00 0.00 0.00 4.34
221 222 3.525537 GGTTAGGGCTTTAGTAACGACC 58.474 50.000 2.95 2.95 0.00 4.79
222 223 3.525537 GTTAGGGCTTTAGTAACGACCC 58.474 50.000 7.64 8.73 37.63 4.46
223 224 1.948391 AGGGCTTTAGTAACGACCCT 58.052 50.000 7.64 10.62 42.97 4.34
224 225 2.263545 AGGGCTTTAGTAACGACCCTT 58.736 47.619 7.64 0.00 45.55 3.95
225 226 2.641321 AGGGCTTTAGTAACGACCCTTT 59.359 45.455 7.64 0.00 45.55 3.11
226 227 3.840078 AGGGCTTTAGTAACGACCCTTTA 59.160 43.478 7.64 0.00 45.55 1.85
227 228 4.081254 AGGGCTTTAGTAACGACCCTTTAG 60.081 45.833 7.64 0.00 45.55 1.85
228 229 4.323028 GGGCTTTAGTAACGACCCTTTAGT 60.323 45.833 0.00 0.00 34.34 2.24
229 230 4.867047 GGCTTTAGTAACGACCCTTTAGTC 59.133 45.833 0.00 0.00 0.00 2.59
231 232 5.405935 TTTAGTAACGACCCTTTAGTCCC 57.594 43.478 0.00 0.00 32.91 4.46
233 234 1.134995 GTAACGACCCTTTAGTCCCGG 60.135 57.143 0.00 0.00 32.91 5.73
235 236 0.833409 ACGACCCTTTAGTCCCGGTT 60.833 55.000 0.00 0.00 32.91 4.44
236 237 0.108472 CGACCCTTTAGTCCCGGTTC 60.108 60.000 0.00 0.00 32.91 3.62
237 238 0.108472 GACCCTTTAGTCCCGGTTCG 60.108 60.000 0.00 0.00 0.00 3.95
238 239 0.542702 ACCCTTTAGTCCCGGTTCGA 60.543 55.000 0.00 0.00 0.00 3.71
239 240 0.609662 CCCTTTAGTCCCGGTTCGAA 59.390 55.000 0.00 0.00 0.00 3.71
240 241 1.002315 CCCTTTAGTCCCGGTTCGAAA 59.998 52.381 0.00 1.13 0.00 3.46
241 242 2.550639 CCCTTTAGTCCCGGTTCGAAAA 60.551 50.000 0.00 0.00 0.00 2.29
242 243 2.481568 CCTTTAGTCCCGGTTCGAAAAC 59.518 50.000 0.00 0.00 34.46 2.43
245 246 1.589803 AGTCCCGGTTCGAAAACTTG 58.410 50.000 0.00 0.00 35.61 3.16
246 247 0.589708 GTCCCGGTTCGAAAACTTGG 59.410 55.000 0.00 0.15 35.61 3.61
247 248 0.469070 TCCCGGTTCGAAAACTTGGA 59.531 50.000 0.00 2.58 34.67 3.53
248 249 0.589708 CCCGGTTCGAAAACTTGGAC 59.410 55.000 0.00 0.00 34.67 4.02
249 250 1.301423 CCGGTTCGAAAACTTGGACA 58.699 50.000 0.00 0.00 34.67 4.02
252 253 3.427773 CCGGTTCGAAAACTTGGACAAAA 60.428 43.478 0.00 0.00 34.67 2.44
253 254 3.789224 CGGTTCGAAAACTTGGACAAAAG 59.211 43.478 0.00 0.00 35.61 2.27
254 255 4.109766 GGTTCGAAAACTTGGACAAAAGG 58.890 43.478 0.00 0.00 35.61 3.11
256 257 2.100087 TCGAAAACTTGGACAAAAGGCC 59.900 45.455 0.00 0.00 0.00 5.19
257 258 2.801699 CGAAAACTTGGACAAAAGGCCC 60.802 50.000 0.00 0.00 0.00 5.80
258 259 2.174685 AAACTTGGACAAAAGGCCCT 57.825 45.000 0.00 0.00 0.00 5.19
259 260 2.174685 AACTTGGACAAAAGGCCCTT 57.825 45.000 0.00 0.00 0.00 3.95
261 262 2.594131 ACTTGGACAAAAGGCCCTTAC 58.406 47.619 0.00 0.00 0.00 2.34
262 263 2.091555 ACTTGGACAAAAGGCCCTTACA 60.092 45.455 0.00 0.00 0.00 2.41
263 264 2.757894 TGGACAAAAGGCCCTTACAA 57.242 45.000 0.00 0.00 0.00 2.41
264 265 3.033659 TGGACAAAAGGCCCTTACAAA 57.966 42.857 0.00 0.00 0.00 2.83
265 266 2.696187 TGGACAAAAGGCCCTTACAAAC 59.304 45.455 0.00 0.00 0.00 2.93
267 268 1.684450 ACAAAAGGCCCTTACAAACCG 59.316 47.619 0.00 0.00 0.00 4.44
268 269 1.000394 CAAAAGGCCCTTACAAACCGG 60.000 52.381 0.00 0.00 0.00 5.28
269 270 0.541063 AAAGGCCCTTACAAACCGGG 60.541 55.000 6.32 0.00 41.06 5.73
270 271 2.361992 GGCCCTTACAAACCGGGG 60.362 66.667 6.32 0.00 41.64 5.73
271 272 2.437449 GCCCTTACAAACCGGGGT 59.563 61.111 6.32 3.30 40.86 4.95
272 273 1.684629 GCCCTTACAAACCGGGGTA 59.315 57.895 6.32 2.16 40.86 3.69
273 274 0.038021 GCCCTTACAAACCGGGGTAA 59.962 55.000 6.32 10.72 40.86 2.85
276 277 2.821378 CCCTTACAAACCGGGGTAAAAG 59.179 50.000 6.32 3.70 34.22 2.27
277 278 2.229543 CCTTACAAACCGGGGTAAAAGC 59.770 50.000 6.32 0.00 0.00 3.51
278 279 1.908344 TACAAACCGGGGTAAAAGCC 58.092 50.000 6.32 0.00 34.31 4.35
288 289 3.461378 GGGTAAAAGCCCCTTTTCCTA 57.539 47.619 6.25 0.00 41.88 2.94
289 290 3.094572 GGGTAAAAGCCCCTTTTCCTAC 58.905 50.000 6.25 0.98 41.88 3.18
291 292 4.018141 GGGTAAAAGCCCCTTTTCCTACTA 60.018 45.833 6.25 0.00 41.88 1.82
292 293 5.191426 GGTAAAAGCCCCTTTTCCTACTAG 58.809 45.833 6.25 0.00 41.88 2.57
293 294 5.280882 GGTAAAAGCCCCTTTTCCTACTAGT 60.281 44.000 0.00 0.00 41.88 2.57
342 1576 7.154191 ACCTATATGATCACCAGGAAAACAT 57.846 36.000 20.52 0.00 0.00 2.71
453 1783 2.534990 CCAGTCTGTTCTCTTCTCCCT 58.465 52.381 0.00 0.00 0.00 4.20
571 1909 2.561037 CGGCACCAGGAACCAAACC 61.561 63.158 0.00 0.00 0.00 3.27
698 2042 1.060729 TTGTGGAAACATCCTCCCGA 58.939 50.000 0.00 0.00 46.14 5.14
767 2112 3.245016 TGGCAGTGATCCAGAGACATTTT 60.245 43.478 0.00 0.00 0.00 1.82
775 2120 3.405831 TCCAGAGACATTTTGCACTCAG 58.594 45.455 2.98 0.00 30.42 3.35
966 2324 2.426738 CTCTACACCCTCTTCTGAGCTG 59.573 54.545 0.00 0.00 38.93 4.24
969 2327 1.622811 ACACCCTCTTCTGAGCTGAAG 59.377 52.381 7.35 7.35 43.36 3.02
970 2328 1.898472 CACCCTCTTCTGAGCTGAAGA 59.102 52.381 14.03 14.03 46.89 2.87
972 2330 2.178580 CCCTCTTCTGAGCTGAAGACT 58.821 52.381 11.44 0.00 45.00 3.24
973 2331 2.166254 CCCTCTTCTGAGCTGAAGACTC 59.834 54.545 11.44 0.00 45.00 3.36
974 2332 2.159393 CCTCTTCTGAGCTGAAGACTCG 60.159 54.545 11.44 4.20 45.00 4.18
1083 2442 3.130516 CCGTGATCTTGCTTCTGGTACTA 59.869 47.826 0.00 0.00 0.00 1.82
1177 4555 4.715896 CAACTCAATGTCGTCAATGAAGG 58.284 43.478 2.18 0.00 33.77 3.46
1181 4559 5.707298 ACTCAATGTCGTCAATGAAGGAAAT 59.293 36.000 2.18 0.00 33.77 2.17
1184 4562 5.551760 ATGTCGTCAATGAAGGAAATGAC 57.448 39.130 0.00 0.00 38.98 3.06
1189 4567 3.091545 TCAATGAAGGAAATGACTGGGC 58.908 45.455 0.00 0.00 0.00 5.36
1191 4569 1.075601 TGAAGGAAATGACTGGGCCT 58.924 50.000 4.53 0.00 0.00 5.19
1238 4616 2.755650 GACAAGCGAGACAAAGAGGAA 58.244 47.619 0.00 0.00 0.00 3.36
1266 5035 2.475187 CGTTGCTGCAGATGAAGTTAGC 60.475 50.000 20.43 0.00 0.00 3.09
1272 5041 1.083806 CAGATGAAGTTAGCGCGGCA 61.084 55.000 8.83 0.00 0.00 5.69
1525 5312 2.557924 TCTTGGCAATGCGATTTCAAGT 59.442 40.909 16.57 0.00 34.88 3.16
1538 5325 5.904080 GCGATTTCAAGTAACATATGTGAGC 59.096 40.000 9.63 2.92 0.00 4.26
1557 5344 1.679944 GCTGTTGCCTGCCTCTTGATA 60.680 52.381 0.00 0.00 0.00 2.15
1581 5368 1.672356 GTCTCGTGTGGGCTTGCAT 60.672 57.895 0.00 0.00 0.00 3.96
1592 5379 3.382546 GTGGGCTTGCATCATTACAGATT 59.617 43.478 0.00 0.00 0.00 2.40
1602 5389 9.979578 TTGCATCATTACAGATTTACAAAGTTT 57.020 25.926 0.00 0.00 0.00 2.66
1622 5409 9.533253 AAAGTTTTCATGATTTTCAGTAACCTG 57.467 29.630 0.00 0.00 40.25 4.00
1663 5590 4.944048 AGAACCACCAATTTGTAACAAGC 58.056 39.130 0.00 0.00 0.00 4.01
1665 5592 4.053469 ACCACCAATTTGTAACAAGCAC 57.947 40.909 0.00 0.00 0.00 4.40
1677 5604 1.068474 ACAAGCACGAACGATGTAGC 58.932 50.000 0.14 0.00 0.00 3.58
1693 5620 2.630098 TGTAGCAGTTGCAAGACTCTCT 59.370 45.455 0.00 0.00 45.16 3.10
1696 5623 2.103771 AGCAGTTGCAAGACTCTCTTCA 59.896 45.455 0.00 0.00 45.16 3.02
1704 5631 1.099689 AGACTCTCTTCACGCCTAGC 58.900 55.000 0.00 0.00 0.00 3.42
1705 5632 0.101579 GACTCTCTTCACGCCTAGCC 59.898 60.000 0.00 0.00 0.00 3.93
1708 5635 1.520342 CTCTTCACGCCTAGCCAGC 60.520 63.158 0.00 0.00 0.00 4.85
1731 5984 6.207025 AGCGAGAGTTTTTAGAGAGAGTTGTA 59.793 38.462 0.00 0.00 0.00 2.41
1744 5997 4.081972 AGAGAGTTGTAGTAGGTGCATGTG 60.082 45.833 0.00 0.00 0.00 3.21
1792 6045 3.627577 GTGGTTGTATATCTGCCAACAGG 59.372 47.826 0.00 0.00 44.59 4.00
1847 6100 2.154462 CCAAGGACTGCTGTACTTTGG 58.846 52.381 17.87 17.24 44.49 3.28
1876 6402 0.037232 GCAGGACGGCTCACTAAAGT 60.037 55.000 0.00 0.00 0.00 2.66
1935 6511 6.877236 TCTCACACATGCTCAATGATAACTA 58.123 36.000 0.00 0.00 38.72 2.24
1936 6512 6.758416 TCTCACACATGCTCAATGATAACTAC 59.242 38.462 0.00 0.00 38.72 2.73
1937 6513 6.643388 TCACACATGCTCAATGATAACTACT 58.357 36.000 0.00 0.00 38.72 2.57
1938 6514 6.758416 TCACACATGCTCAATGATAACTACTC 59.242 38.462 0.00 0.00 38.72 2.59
1939 6515 6.018425 CACACATGCTCAATGATAACTACTCC 60.018 42.308 0.00 0.00 38.72 3.85
1940 6516 5.468072 CACATGCTCAATGATAACTACTCCC 59.532 44.000 0.00 0.00 38.72 4.30
1941 6517 5.367937 ACATGCTCAATGATAACTACTCCCT 59.632 40.000 0.00 0.00 38.72 4.20
1942 6518 5.537300 TGCTCAATGATAACTACTCCCTC 57.463 43.478 0.00 0.00 0.00 4.30
1943 6519 4.345257 TGCTCAATGATAACTACTCCCTCC 59.655 45.833 0.00 0.00 0.00 4.30
1944 6520 4.559704 GCTCAATGATAACTACTCCCTCCG 60.560 50.000 0.00 0.00 0.00 4.63
1945 6521 4.543689 TCAATGATAACTACTCCCTCCGT 58.456 43.478 0.00 0.00 0.00 4.69
1946 6522 5.698104 TCAATGATAACTACTCCCTCCGTA 58.302 41.667 0.00 0.00 0.00 4.02
1947 6523 5.533903 TCAATGATAACTACTCCCTCCGTAC 59.466 44.000 0.00 0.00 0.00 3.67
1948 6524 3.825328 TGATAACTACTCCCTCCGTACC 58.175 50.000 0.00 0.00 0.00 3.34
1949 6525 3.461085 TGATAACTACTCCCTCCGTACCT 59.539 47.826 0.00 0.00 0.00 3.08
1950 6526 4.660303 TGATAACTACTCCCTCCGTACCTA 59.340 45.833 0.00 0.00 0.00 3.08
1951 6527 5.132648 TGATAACTACTCCCTCCGTACCTAA 59.867 44.000 0.00 0.00 0.00 2.69
1952 6528 4.322057 AACTACTCCCTCCGTACCTAAA 57.678 45.455 0.00 0.00 0.00 1.85
1953 6529 4.533001 ACTACTCCCTCCGTACCTAAAT 57.467 45.455 0.00 0.00 0.00 1.40
1954 6530 5.653255 ACTACTCCCTCCGTACCTAAATA 57.347 43.478 0.00 0.00 0.00 1.40
1955 6531 6.211505 ACTACTCCCTCCGTACCTAAATAT 57.788 41.667 0.00 0.00 0.00 1.28
1956 6532 7.335127 ACTACTCCCTCCGTACCTAAATATA 57.665 40.000 0.00 0.00 0.00 0.86
1957 6533 7.759607 ACTACTCCCTCCGTACCTAAATATAA 58.240 38.462 0.00 0.00 0.00 0.98
1958 6534 7.887495 ACTACTCCCTCCGTACCTAAATATAAG 59.113 40.741 0.00 0.00 0.00 1.73
1959 6535 6.618501 ACTCCCTCCGTACCTAAATATAAGT 58.381 40.000 0.00 0.00 0.00 2.24
1960 6536 6.718912 ACTCCCTCCGTACCTAAATATAAGTC 59.281 42.308 0.00 0.00 0.00 3.01
1961 6537 6.856757 TCCCTCCGTACCTAAATATAAGTCT 58.143 40.000 0.00 0.00 0.00 3.24
1962 6538 7.300658 TCCCTCCGTACCTAAATATAAGTCTT 58.699 38.462 0.00 0.00 0.00 3.01
1963 6539 7.786464 TCCCTCCGTACCTAAATATAAGTCTTT 59.214 37.037 0.00 0.00 0.00 2.52
1964 6540 8.087136 CCCTCCGTACCTAAATATAAGTCTTTC 58.913 40.741 0.00 0.00 0.00 2.62
1965 6541 8.858094 CCTCCGTACCTAAATATAAGTCTTTCT 58.142 37.037 0.00 0.00 0.00 2.52
2004 6580 9.562408 AGGACTACATATGGATGTATATAGACG 57.438 37.037 7.80 0.00 45.42 4.18
2005 6581 9.339850 GGACTACATATGGATGTATATAGACGT 57.660 37.037 7.80 0.00 45.42 4.34
2024 6600 7.458409 AGACGTATTTTAGAGTGTAGGTTCA 57.542 36.000 0.00 0.00 0.00 3.18
2025 6601 7.311408 AGACGTATTTTAGAGTGTAGGTTCAC 58.689 38.462 0.00 0.00 38.46 3.18
2035 6611 4.718961 AGTGTAGGTTCACTCATTTTGCT 58.281 39.130 0.00 0.00 44.07 3.91
2036 6612 4.757149 AGTGTAGGTTCACTCATTTTGCTC 59.243 41.667 0.00 0.00 44.07 4.26
2037 6613 4.072131 TGTAGGTTCACTCATTTTGCTCC 58.928 43.478 0.00 0.00 0.00 4.70
2038 6614 2.154462 AGGTTCACTCATTTTGCTCCG 58.846 47.619 0.00 0.00 0.00 4.63
2039 6615 1.880027 GGTTCACTCATTTTGCTCCGT 59.120 47.619 0.00 0.00 0.00 4.69
2040 6616 3.071479 GGTTCACTCATTTTGCTCCGTA 58.929 45.455 0.00 0.00 0.00 4.02
2041 6617 3.689649 GGTTCACTCATTTTGCTCCGTAT 59.310 43.478 0.00 0.00 0.00 3.06
2042 6618 4.201822 GGTTCACTCATTTTGCTCCGTATC 60.202 45.833 0.00 0.00 0.00 2.24
2043 6619 4.471904 TCACTCATTTTGCTCCGTATCT 57.528 40.909 0.00 0.00 0.00 1.98
2044 6620 5.592104 TCACTCATTTTGCTCCGTATCTA 57.408 39.130 0.00 0.00 0.00 1.98
2045 6621 5.592054 TCACTCATTTTGCTCCGTATCTAG 58.408 41.667 0.00 0.00 0.00 2.43
2046 6622 5.127194 TCACTCATTTTGCTCCGTATCTAGT 59.873 40.000 0.00 0.00 0.00 2.57
2047 6623 5.460419 CACTCATTTTGCTCCGTATCTAGTC 59.540 44.000 0.00 0.00 0.00 2.59
2048 6624 4.945246 TCATTTTGCTCCGTATCTAGTCC 58.055 43.478 0.00 0.00 0.00 3.85
2049 6625 4.404394 TCATTTTGCTCCGTATCTAGTCCA 59.596 41.667 0.00 0.00 0.00 4.02
2050 6626 3.795623 TTTGCTCCGTATCTAGTCCAC 57.204 47.619 0.00 0.00 0.00 4.02
2051 6627 2.430248 TGCTCCGTATCTAGTCCACA 57.570 50.000 0.00 0.00 0.00 4.17
2052 6628 2.945456 TGCTCCGTATCTAGTCCACAT 58.055 47.619 0.00 0.00 0.00 3.21
2053 6629 3.296854 TGCTCCGTATCTAGTCCACATT 58.703 45.455 0.00 0.00 0.00 2.71
2054 6630 4.466827 TGCTCCGTATCTAGTCCACATTA 58.533 43.478 0.00 0.00 0.00 1.90
2055 6631 4.519350 TGCTCCGTATCTAGTCCACATTAG 59.481 45.833 0.00 0.00 0.00 1.73
2056 6632 4.760715 GCTCCGTATCTAGTCCACATTAGA 59.239 45.833 0.00 0.00 0.00 2.10
2057 6633 5.241064 GCTCCGTATCTAGTCCACATTAGAA 59.759 44.000 0.00 0.00 30.33 2.10
2058 6634 6.071840 GCTCCGTATCTAGTCCACATTAGAAT 60.072 42.308 0.00 0.00 30.33 2.40
2059 6635 7.524038 GCTCCGTATCTAGTCCACATTAGAATT 60.524 40.741 0.00 0.00 30.33 2.17
2060 6636 7.883217 TCCGTATCTAGTCCACATTAGAATTC 58.117 38.462 0.00 0.00 30.33 2.17
2061 6637 7.724506 TCCGTATCTAGTCCACATTAGAATTCT 59.275 37.037 13.56 13.56 30.33 2.40
2062 6638 8.024285 CCGTATCTAGTCCACATTAGAATTCTC 58.976 40.741 12.24 0.00 30.33 2.87
2063 6639 8.788806 CGTATCTAGTCCACATTAGAATTCTCT 58.211 37.037 12.24 2.77 35.52 3.10
2092 6668 9.743581 AAAAACTTATATTTAGGAACGGAGGAA 57.256 29.630 0.00 0.00 0.00 3.36
2093 6669 8.959705 AAACTTATATTTAGGAACGGAGGAAG 57.040 34.615 0.00 0.00 0.00 3.46
2094 6670 7.672122 ACTTATATTTAGGAACGGAGGAAGT 57.328 36.000 0.00 0.00 0.00 3.01
2114 6690 3.843027 AGTAGATGATTGATGGGGCTAGG 59.157 47.826 0.00 0.00 0.00 3.02
2116 6692 2.374504 AGATGATTGATGGGGCTAGGTG 59.625 50.000 0.00 0.00 0.00 4.00
2118 6694 0.846693 GATTGATGGGGCTAGGTGGT 59.153 55.000 0.00 0.00 0.00 4.16
2145 6721 2.107950 TGGAAGGCAACGATAAGTGG 57.892 50.000 0.00 0.00 46.39 4.00
2156 6732 6.401796 GGCAACGATAAGTGGTGTAACTAAAG 60.402 42.308 0.00 0.00 36.74 1.85
2167 6743 6.425721 GTGGTGTAACTAAAGAATGCAGTACA 59.574 38.462 0.00 0.00 36.74 2.90
2172 6748 7.875554 TGTAACTAAAGAATGCAGTACATGACA 59.124 33.333 0.00 0.00 39.60 3.58
2181 6757 3.257393 GCAGTACATGACACTCTCAAGG 58.743 50.000 0.00 0.00 30.60 3.61
2226 6803 5.804771 GCAGAGGGAGTTAAAGAGGAAATGT 60.805 44.000 0.00 0.00 0.00 2.71
2234 6811 1.755179 AAGAGGAAATGTCGCCATGG 58.245 50.000 7.63 7.63 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.459348 CAGGGGCTGGGGTTTTTGT 60.459 57.895 0.00 0.00 0.00 2.83
2 3 0.762461 TTCAGGGGCTGGGGTTTTTG 60.762 55.000 0.00 0.00 31.51 2.44
3 4 0.030603 TTTCAGGGGCTGGGGTTTTT 60.031 50.000 0.00 0.00 31.51 1.94
4 5 0.193321 ATTTCAGGGGCTGGGGTTTT 59.807 50.000 0.00 0.00 31.51 2.43
5 6 0.545071 CATTTCAGGGGCTGGGGTTT 60.545 55.000 0.00 0.00 31.51 3.27
7 8 2.772924 CATTTCAGGGGCTGGGGT 59.227 61.111 0.00 0.00 31.51 4.95
9 10 2.361771 AGCATTTCAGGGGCTGGG 59.638 61.111 0.00 0.00 36.34 4.45
13 14 3.056313 GCGTCAGCATTTCAGGGGC 62.056 63.158 0.00 0.00 44.35 5.80
14 15 2.753966 CGCGTCAGCATTTCAGGGG 61.754 63.158 0.00 0.00 45.49 4.79
15 16 2.034879 ACGCGTCAGCATTTCAGGG 61.035 57.895 5.58 0.00 45.49 4.45
16 17 1.133253 CACGCGTCAGCATTTCAGG 59.867 57.895 9.86 0.00 45.49 3.86
18 19 0.673333 ATCCACGCGTCAGCATTTCA 60.673 50.000 9.86 0.00 45.49 2.69
19 20 0.247814 CATCCACGCGTCAGCATTTC 60.248 55.000 9.86 0.00 45.49 2.17
20 21 1.796151 CATCCACGCGTCAGCATTT 59.204 52.632 9.86 0.00 45.49 2.32
22 23 3.197790 GCATCCACGCGTCAGCAT 61.198 61.111 9.86 0.00 45.49 3.79
24 25 2.978452 ATAGGCATCCACGCGTCAGC 62.978 60.000 9.86 11.14 40.74 4.26
25 26 0.941463 GATAGGCATCCACGCGTCAG 60.941 60.000 9.86 3.57 0.00 3.51
26 27 1.067416 GATAGGCATCCACGCGTCA 59.933 57.895 9.86 0.00 0.00 4.35
27 28 2.016704 CGATAGGCATCCACGCGTC 61.017 63.158 9.86 0.00 0.00 5.19
40 41 1.143183 CACCAACCGGGACCGATAG 59.857 63.158 13.13 0.00 42.83 2.08
42 43 2.605295 TCACCAACCGGGACCGAT 60.605 61.111 13.13 0.00 42.83 4.18
43 44 3.618750 GTCACCAACCGGGACCGA 61.619 66.667 13.13 0.00 42.83 4.69
45 46 2.281276 GTGTCACCAACCGGGACC 60.281 66.667 6.32 0.00 41.15 4.46
46 47 2.281276 GGTGTCACCAACCGGGAC 60.281 66.667 17.59 3.26 38.42 4.46
55 56 2.281276 GTCCCGGTTGGTGTCACC 60.281 66.667 15.64 15.64 39.22 4.02
56 57 0.748729 TTTGTCCCGGTTGGTGTCAC 60.749 55.000 0.00 0.00 34.77 3.67
57 58 0.034380 TTTTGTCCCGGTTGGTGTCA 60.034 50.000 0.00 0.00 34.77 3.58
59 60 0.753848 CCTTTTGTCCCGGTTGGTGT 60.754 55.000 0.00 0.00 34.77 4.16
60 61 2.037871 CCTTTTGTCCCGGTTGGTG 58.962 57.895 0.00 0.00 34.77 4.17
61 62 1.830847 GCCTTTTGTCCCGGTTGGT 60.831 57.895 0.00 0.00 34.77 3.67
62 63 2.570284 GGCCTTTTGTCCCGGTTGG 61.570 63.158 0.00 0.00 0.00 3.77
63 64 2.570284 GGGCCTTTTGTCCCGGTTG 61.570 63.158 0.84 0.00 32.00 3.77
64 65 2.203582 GGGCCTTTTGTCCCGGTT 60.204 61.111 0.84 0.00 32.00 4.44
69 70 0.033109 ATAGCCAGGGCCTTTTGTCC 60.033 55.000 1.32 0.00 43.17 4.02
70 71 1.478105 CAATAGCCAGGGCCTTTTGTC 59.522 52.381 1.32 0.00 43.17 3.18
71 72 1.560505 CAATAGCCAGGGCCTTTTGT 58.439 50.000 1.32 0.00 43.17 2.83
72 73 0.826062 CCAATAGCCAGGGCCTTTTG 59.174 55.000 1.32 8.36 43.17 2.44
74 75 0.033109 GACCAATAGCCAGGGCCTTT 60.033 55.000 1.32 0.00 43.17 3.11
76 77 3.335711 GACCAATAGCCAGGGCCT 58.664 61.111 0.00 0.00 43.17 5.19
78 79 2.195956 GGGACCAATAGCCAGGGC 59.804 66.667 0.97 0.97 42.33 5.19
80 81 1.921869 AACCGGGACCAATAGCCAGG 61.922 60.000 6.32 0.00 44.00 4.45
81 82 0.748005 CAACCGGGACCAATAGCCAG 60.748 60.000 6.32 0.00 0.00 4.85
82 83 1.301623 CAACCGGGACCAATAGCCA 59.698 57.895 6.32 0.00 0.00 4.75
84 85 1.029947 CACCAACCGGGACCAATAGC 61.030 60.000 6.32 0.00 41.15 2.97
85 86 0.393808 CCACCAACCGGGACCAATAG 60.394 60.000 6.32 0.00 41.15 1.73
86 87 1.686416 CCACCAACCGGGACCAATA 59.314 57.895 6.32 0.00 41.15 1.90
87 88 2.438795 CCACCAACCGGGACCAAT 59.561 61.111 6.32 0.00 41.15 3.16
88 89 4.589675 GCCACCAACCGGGACCAA 62.590 66.667 6.32 0.00 41.15 3.67
100 101 4.740822 ATCCCGCTTGGTGCCACC 62.741 66.667 7.01 7.01 39.22 4.61
101 102 3.134127 GATCCCGCTTGGTGCCAC 61.134 66.667 0.00 0.00 38.78 5.01
102 103 2.705312 TTTGATCCCGCTTGGTGCCA 62.705 55.000 0.00 0.00 38.78 4.92
104 105 0.960364 TCTTTGATCCCGCTTGGTGC 60.960 55.000 0.00 0.00 38.57 5.01
106 107 0.322546 GGTCTTTGATCCCGCTTGGT 60.323 55.000 0.00 0.00 34.77 3.67
107 108 1.032114 GGGTCTTTGATCCCGCTTGG 61.032 60.000 0.00 0.00 33.97 3.61
108 109 1.032114 GGGGTCTTTGATCCCGCTTG 61.032 60.000 0.00 0.00 43.74 4.01
109 110 1.303282 GGGGTCTTTGATCCCGCTT 59.697 57.895 0.00 0.00 43.74 4.68
110 111 2.998949 GGGGTCTTTGATCCCGCT 59.001 61.111 0.00 0.00 43.74 5.52
145 146 4.100084 TCCTCCATGTGGCCGCTG 62.100 66.667 18.96 12.77 34.44 5.18
146 147 4.101448 GTCCTCCATGTGGCCGCT 62.101 66.667 18.96 0.00 34.44 5.52
148 149 2.876368 GAAGGTCCTCCATGTGGCCG 62.876 65.000 0.00 0.00 35.89 6.13
149 150 1.077429 GAAGGTCCTCCATGTGGCC 60.077 63.158 0.00 0.00 35.89 5.36
150 151 0.393537 CAGAAGGTCCTCCATGTGGC 60.394 60.000 0.00 0.00 35.89 5.01
152 153 2.393271 GACAGAAGGTCCTCCATGTG 57.607 55.000 8.00 0.00 40.83 3.21
161 162 1.080025 CGAACCGGGACAGAAGGTC 60.080 63.158 6.32 0.00 46.20 3.85
162 163 1.835712 ACGAACCGGGACAGAAGGT 60.836 57.895 6.32 0.00 40.50 3.50
163 164 1.374252 CACGAACCGGGACAGAAGG 60.374 63.158 6.32 0.00 28.17 3.46
164 165 0.599558 TACACGAACCGGGACAGAAG 59.400 55.000 6.32 0.00 32.98 2.85
166 167 0.599558 CTTACACGAACCGGGACAGA 59.400 55.000 6.32 0.00 32.98 3.41
167 168 0.599558 TCTTACACGAACCGGGACAG 59.400 55.000 6.32 0.00 32.98 3.51
168 169 1.039068 TTCTTACACGAACCGGGACA 58.961 50.000 6.32 0.00 32.98 4.02
169 170 1.422388 GTTCTTACACGAACCGGGAC 58.578 55.000 6.32 0.00 37.82 4.46
175 176 1.000171 AGTCCCGGTTCTTACACGAAC 60.000 52.381 0.00 0.00 41.91 3.95
177 178 2.198827 TAGTCCCGGTTCTTACACGA 57.801 50.000 0.00 0.00 0.00 4.35
178 179 3.248266 CTTTAGTCCCGGTTCTTACACG 58.752 50.000 0.00 0.00 0.00 4.49
179 180 3.593096 CCTTTAGTCCCGGTTCTTACAC 58.407 50.000 0.00 0.00 0.00 2.90
180 181 2.568509 CCCTTTAGTCCCGGTTCTTACA 59.431 50.000 0.00 0.00 0.00 2.41
181 182 2.568956 ACCCTTTAGTCCCGGTTCTTAC 59.431 50.000 0.00 0.00 0.00 2.34
183 184 1.738474 ACCCTTTAGTCCCGGTTCTT 58.262 50.000 0.00 0.00 0.00 2.52
184 185 1.738474 AACCCTTTAGTCCCGGTTCT 58.262 50.000 0.00 0.15 33.22 3.01
185 186 2.093288 CCTAACCCTTTAGTCCCGGTTC 60.093 54.545 0.00 0.00 39.33 3.62
186 187 1.911357 CCTAACCCTTTAGTCCCGGTT 59.089 52.381 0.00 0.00 41.43 4.44
187 188 1.576577 CCTAACCCTTTAGTCCCGGT 58.423 55.000 0.00 0.00 33.92 5.28
188 189 0.835276 CCCTAACCCTTTAGTCCCGG 59.165 60.000 0.00 0.00 33.92 5.73
189 190 0.179702 GCCCTAACCCTTTAGTCCCG 59.820 60.000 0.00 0.00 33.92 5.14
190 191 1.592948 AGCCCTAACCCTTTAGTCCC 58.407 55.000 0.00 0.00 33.92 4.46
191 192 3.733883 AAAGCCCTAACCCTTTAGTCC 57.266 47.619 0.00 0.00 33.92 3.85
195 196 5.483583 TCGTTACTAAAGCCCTAACCCTTTA 59.516 40.000 0.00 0.00 33.64 1.85
196 197 4.286808 TCGTTACTAAAGCCCTAACCCTTT 59.713 41.667 0.00 0.00 35.60 3.11
198 199 3.196469 GTCGTTACTAAAGCCCTAACCCT 59.804 47.826 0.00 0.00 0.00 4.34
199 200 3.525537 GTCGTTACTAAAGCCCTAACCC 58.474 50.000 0.00 0.00 0.00 4.11
200 201 3.525537 GGTCGTTACTAAAGCCCTAACC 58.474 50.000 0.00 0.00 0.00 2.85
201 202 3.196469 AGGGTCGTTACTAAAGCCCTAAC 59.804 47.826 12.05 0.00 44.00 2.34
202 203 3.444029 AGGGTCGTTACTAAAGCCCTAA 58.556 45.455 12.05 0.00 44.00 2.69
203 204 3.105959 AGGGTCGTTACTAAAGCCCTA 57.894 47.619 12.05 0.00 44.00 3.53
206 207 4.825422 ACTAAAGGGTCGTTACTAAAGCC 58.175 43.478 0.00 0.00 0.00 4.35
207 208 4.867047 GGACTAAAGGGTCGTTACTAAAGC 59.133 45.833 0.00 0.00 37.12 3.51
208 209 5.414360 GGGACTAAAGGGTCGTTACTAAAG 58.586 45.833 0.00 0.00 37.12 1.85
211 212 3.016736 CGGGACTAAAGGGTCGTTACTA 58.983 50.000 0.00 0.00 37.12 1.82
212 213 1.821136 CGGGACTAAAGGGTCGTTACT 59.179 52.381 0.00 0.00 37.12 2.24
213 214 1.134995 CCGGGACTAAAGGGTCGTTAC 60.135 57.143 0.00 0.00 37.12 2.50
214 215 1.185315 CCGGGACTAAAGGGTCGTTA 58.815 55.000 0.00 0.00 37.12 3.18
215 216 0.833409 ACCGGGACTAAAGGGTCGTT 60.833 55.000 6.32 0.00 37.12 3.85
216 217 0.833409 AACCGGGACTAAAGGGTCGT 60.833 55.000 6.32 0.00 37.12 4.34
217 218 0.108472 GAACCGGGACTAAAGGGTCG 60.108 60.000 6.32 0.00 37.12 4.79
219 220 0.542702 TCGAACCGGGACTAAAGGGT 60.543 55.000 6.32 0.00 0.00 4.34
220 221 0.609662 TTCGAACCGGGACTAAAGGG 59.390 55.000 6.32 0.00 0.00 3.95
221 222 2.460757 TTTCGAACCGGGACTAAAGG 57.539 50.000 6.32 0.00 0.00 3.11
222 223 3.396560 AGTTTTCGAACCGGGACTAAAG 58.603 45.455 6.32 0.00 0.00 1.85
223 224 3.473923 AGTTTTCGAACCGGGACTAAA 57.526 42.857 6.32 0.93 0.00 1.85
224 225 3.132925 CAAGTTTTCGAACCGGGACTAA 58.867 45.455 6.32 0.00 0.00 2.24
225 226 2.548493 CCAAGTTTTCGAACCGGGACTA 60.548 50.000 6.32 0.00 0.00 2.59
226 227 1.589803 CAAGTTTTCGAACCGGGACT 58.410 50.000 6.32 0.00 0.00 3.85
227 228 0.589708 CCAAGTTTTCGAACCGGGAC 59.410 55.000 6.32 0.00 0.00 4.46
228 229 0.469070 TCCAAGTTTTCGAACCGGGA 59.531 50.000 6.32 2.14 0.00 5.14
229 230 0.589708 GTCCAAGTTTTCGAACCGGG 59.410 55.000 6.32 0.00 0.00 5.73
231 232 3.408288 TTTGTCCAAGTTTTCGAACCG 57.592 42.857 0.00 0.00 0.00 4.44
233 234 3.550275 GCCTTTTGTCCAAGTTTTCGAAC 59.450 43.478 0.00 0.00 0.00 3.95
235 236 2.100087 GGCCTTTTGTCCAAGTTTTCGA 59.900 45.455 0.00 0.00 0.00 3.71
236 237 2.469826 GGCCTTTTGTCCAAGTTTTCG 58.530 47.619 0.00 0.00 0.00 3.46
237 238 2.434336 AGGGCCTTTTGTCCAAGTTTTC 59.566 45.455 0.00 0.00 0.00 2.29
238 239 2.477245 AGGGCCTTTTGTCCAAGTTTT 58.523 42.857 0.00 0.00 0.00 2.43
239 240 2.174685 AGGGCCTTTTGTCCAAGTTT 57.825 45.000 0.00 0.00 0.00 2.66
240 241 2.174685 AAGGGCCTTTTGTCCAAGTT 57.825 45.000 14.48 0.00 0.00 2.66
241 242 2.091555 TGTAAGGGCCTTTTGTCCAAGT 60.092 45.455 26.29 0.00 0.00 3.16
242 243 2.593026 TGTAAGGGCCTTTTGTCCAAG 58.407 47.619 26.29 0.00 0.00 3.61
245 246 2.036733 GGTTTGTAAGGGCCTTTTGTCC 59.963 50.000 26.29 16.19 0.00 4.02
246 247 2.287970 CGGTTTGTAAGGGCCTTTTGTC 60.288 50.000 26.29 12.96 0.00 3.18
247 248 1.684450 CGGTTTGTAAGGGCCTTTTGT 59.316 47.619 26.29 1.50 0.00 2.83
248 249 1.000394 CCGGTTTGTAAGGGCCTTTTG 60.000 52.381 26.29 6.59 0.00 2.44
249 250 1.334160 CCGGTTTGTAAGGGCCTTTT 58.666 50.000 26.29 2.86 0.00 2.27
252 253 2.761160 CCCGGTTTGTAAGGGCCT 59.239 61.111 0.00 0.00 38.51 5.19
253 254 1.851065 TACCCCGGTTTGTAAGGGCC 61.851 60.000 0.00 0.00 43.96 5.80
254 255 0.038021 TTACCCCGGTTTGTAAGGGC 59.962 55.000 0.00 0.00 43.96 5.19
256 257 2.229543 GCTTTTACCCCGGTTTGTAAGG 59.770 50.000 0.00 0.00 0.00 2.69
257 258 2.229543 GGCTTTTACCCCGGTTTGTAAG 59.770 50.000 0.00 0.00 0.00 2.34
258 259 2.237643 GGCTTTTACCCCGGTTTGTAA 58.762 47.619 0.00 2.39 0.00 2.41
259 260 1.547449 GGGCTTTTACCCCGGTTTGTA 60.547 52.381 0.00 0.00 45.00 2.41
261 262 1.969085 GGGCTTTTACCCCGGTTTG 59.031 57.895 0.00 0.00 45.00 2.93
262 263 4.525467 GGGCTTTTACCCCGGTTT 57.475 55.556 0.00 0.00 45.00 3.27
268 269 2.320681 AGGAAAAGGGGCTTTTACCC 57.679 50.000 0.00 0.00 43.22 3.69
269 270 4.043608 AGTAGGAAAAGGGGCTTTTACC 57.956 45.455 0.00 0.00 43.22 2.85
270 271 5.646793 CACTAGTAGGAAAAGGGGCTTTTAC 59.353 44.000 1.45 0.00 42.72 2.01
271 272 5.280830 CCACTAGTAGGAAAAGGGGCTTTTA 60.281 44.000 1.45 0.00 42.72 1.52
272 273 4.508584 CCACTAGTAGGAAAAGGGGCTTTT 60.509 45.833 1.45 0.00 44.92 2.27
273 274 3.010250 CCACTAGTAGGAAAAGGGGCTTT 59.990 47.826 1.45 0.00 34.94 3.51
276 277 1.212195 CCCACTAGTAGGAAAAGGGGC 59.788 57.143 0.22 0.00 32.04 5.80
277 278 2.772515 CTCCCACTAGTAGGAAAAGGGG 59.227 54.545 11.40 7.81 35.52 4.79
278 279 3.451890 ACTCCCACTAGTAGGAAAAGGG 58.548 50.000 11.40 8.52 36.15 3.95
279 280 8.493787 AATATACTCCCACTAGTAGGAAAAGG 57.506 38.462 11.40 2.47 35.50 3.11
284 285 9.804977 GAACTAAATATACTCCCACTAGTAGGA 57.195 37.037 9.83 9.83 35.50 2.94
285 286 9.584008 TGAACTAAATATACTCCCACTAGTAGG 57.416 37.037 0.09 0.09 35.50 3.18
291 292 8.047310 CCTGTTTGAACTAAATATACTCCCACT 58.953 37.037 0.00 0.00 0.00 4.00
292 293 8.044908 TCCTGTTTGAACTAAATATACTCCCAC 58.955 37.037 0.00 0.00 0.00 4.61
293 294 8.044908 GTCCTGTTTGAACTAAATATACTCCCA 58.955 37.037 0.00 0.00 0.00 4.37
392 1630 1.364721 CGGACACGCATTGGATGTAA 58.635 50.000 0.00 0.00 0.00 2.41
422 1752 3.259876 AGAACAGACTGGCGGTTATGTTA 59.740 43.478 23.02 0.00 37.86 2.41
453 1783 2.921069 GCGTCTTCTGAAAGCGTCTACA 60.921 50.000 12.52 0.00 35.70 2.74
698 2042 0.630673 TCCTTGCATGCCACCCTAAT 59.369 50.000 16.68 0.00 0.00 1.73
740 2084 3.873952 GTCTCTGGATCACTGCCATTAAC 59.126 47.826 0.00 0.00 34.33 2.01
805 2153 3.136443 TCTGTCAGGAGTGGTTTGTCAAT 59.864 43.478 0.00 0.00 0.00 2.57
810 2158 2.620251 TGTCTGTCAGGAGTGGTTTG 57.380 50.000 0.00 0.00 0.00 2.93
942 2290 2.687935 CTCAGAAGAGGGTGTAGAGAGC 59.312 54.545 0.00 0.00 38.26 4.09
966 2324 5.277634 GGAGAGTATACTTCAGCGAGTCTTC 60.278 48.000 6.88 0.00 0.00 2.87
969 2327 3.878103 TGGAGAGTATACTTCAGCGAGTC 59.122 47.826 6.88 0.00 0.00 3.36
970 2328 3.887352 TGGAGAGTATACTTCAGCGAGT 58.113 45.455 6.88 0.00 0.00 4.18
972 2330 4.720046 AGATGGAGAGTATACTTCAGCGA 58.280 43.478 6.88 0.00 36.95 4.93
973 2331 5.703592 ACTAGATGGAGAGTATACTTCAGCG 59.296 44.000 6.88 1.40 36.95 5.18
974 2332 6.712998 TGACTAGATGGAGAGTATACTTCAGC 59.287 42.308 6.88 9.00 32.61 4.26
1189 4567 1.905215 AGATCCCTCGATGGCATTAGG 59.095 52.381 18.27 18.27 0.00 2.69
1191 4569 1.002430 GCAGATCCCTCGATGGCATTA 59.998 52.381 0.00 0.00 0.00 1.90
1266 5035 1.349627 CAACTTATGAGCTGCCGCG 59.650 57.895 0.00 0.00 42.32 6.46
1272 5041 0.905357 ACTCCGGCAACTTATGAGCT 59.095 50.000 0.00 0.00 0.00 4.09
1275 5044 3.410631 TGAAACTCCGGCAACTTATGA 57.589 42.857 0.00 0.00 0.00 2.15
1352 5121 8.116651 TCGATCAAGAGAGGAAATATAGAAGG 57.883 38.462 0.00 0.00 0.00 3.46
1358 5127 8.365060 AGATCATCGATCAAGAGAGGAAATAT 57.635 34.615 0.00 0.00 41.12 1.28
1415 5184 2.184020 ATCAGCCTGCAGCCGTTGTA 62.184 55.000 8.66 0.00 45.47 2.41
1418 5187 1.153289 CTATCAGCCTGCAGCCGTT 60.153 57.895 8.66 0.00 45.47 4.44
1419 5188 1.617018 TTCTATCAGCCTGCAGCCGT 61.617 55.000 8.66 0.00 45.47 5.68
1525 5312 3.940852 CAGGCAACAGCTCACATATGTTA 59.059 43.478 5.37 0.00 35.47 2.41
1538 5325 2.093288 TCTATCAAGAGGCAGGCAACAG 60.093 50.000 0.00 0.00 41.41 3.16
1557 5344 0.613292 AGCCCACACGAGACTGATCT 60.613 55.000 0.00 0.00 38.15 2.75
1622 5409 2.289820 TCTATATGCAGGTCGTCGTCAC 59.710 50.000 0.00 0.00 0.00 3.67
1663 5590 1.201812 GCAACTGCTACATCGTTCGTG 60.202 52.381 0.00 0.00 38.21 4.35
1665 5592 1.067693 TGCAACTGCTACATCGTTCG 58.932 50.000 2.95 0.00 42.66 3.95
1677 5604 2.474359 CGTGAAGAGAGTCTTGCAACTG 59.526 50.000 0.00 0.00 36.73 3.16
1704 5631 4.082463 ACTCTCTCTAAAAACTCTCGCTGG 60.082 45.833 0.00 0.00 0.00 4.85
1705 5632 5.054390 ACTCTCTCTAAAAACTCTCGCTG 57.946 43.478 0.00 0.00 0.00 5.18
1708 5635 7.586747 ACTACAACTCTCTCTAAAAACTCTCG 58.413 38.462 0.00 0.00 0.00 4.04
1731 5984 0.036010 GACTGGCACATGCACCTACT 60.036 55.000 6.15 0.00 44.36 2.57
1735 5988 2.986306 GCTGACTGGCACATGCACC 61.986 63.158 6.15 0.00 44.36 5.01
1744 5997 0.250234 TGGACATAGTGCTGACTGGC 59.750 55.000 0.00 0.00 33.21 4.85
1935 6511 6.618501 ACTTATATTTAGGTACGGAGGGAGT 58.381 40.000 0.00 0.00 0.00 3.85
1936 6512 6.947158 AGACTTATATTTAGGTACGGAGGGAG 59.053 42.308 0.00 0.00 0.00 4.30
1937 6513 6.856757 AGACTTATATTTAGGTACGGAGGGA 58.143 40.000 0.00 0.00 0.00 4.20
1938 6514 7.536159 AAGACTTATATTTAGGTACGGAGGG 57.464 40.000 0.00 0.00 0.00 4.30
1939 6515 8.858094 AGAAAGACTTATATTTAGGTACGGAGG 58.142 37.037 0.00 0.00 0.00 4.30
1998 6574 9.182214 TGAACCTACACTCTAAAATACGTCTAT 57.818 33.333 0.00 0.00 0.00 1.98
1999 6575 8.454106 GTGAACCTACACTCTAAAATACGTCTA 58.546 37.037 0.00 0.00 37.73 2.59
2000 6576 7.176340 AGTGAACCTACACTCTAAAATACGTCT 59.824 37.037 0.00 0.00 46.36 4.18
2001 6577 7.311408 AGTGAACCTACACTCTAAAATACGTC 58.689 38.462 0.00 0.00 46.36 4.34
2002 6578 7.224522 AGTGAACCTACACTCTAAAATACGT 57.775 36.000 0.00 0.00 46.36 3.57
2014 6590 4.083271 GGAGCAAAATGAGTGAACCTACAC 60.083 45.833 0.00 0.00 40.60 2.90
2015 6591 4.072131 GGAGCAAAATGAGTGAACCTACA 58.928 43.478 0.00 0.00 0.00 2.74
2016 6592 3.125316 CGGAGCAAAATGAGTGAACCTAC 59.875 47.826 0.00 0.00 0.00 3.18
2017 6593 3.244422 ACGGAGCAAAATGAGTGAACCTA 60.244 43.478 0.00 0.00 0.00 3.08
2018 6594 2.154462 CGGAGCAAAATGAGTGAACCT 58.846 47.619 0.00 0.00 0.00 3.50
2019 6595 1.880027 ACGGAGCAAAATGAGTGAACC 59.120 47.619 0.00 0.00 0.00 3.62
2020 6596 4.631813 AGATACGGAGCAAAATGAGTGAAC 59.368 41.667 0.00 0.00 0.00 3.18
2021 6597 4.832248 AGATACGGAGCAAAATGAGTGAA 58.168 39.130 0.00 0.00 0.00 3.18
2022 6598 4.471904 AGATACGGAGCAAAATGAGTGA 57.528 40.909 0.00 0.00 0.00 3.41
2023 6599 5.352284 ACTAGATACGGAGCAAAATGAGTG 58.648 41.667 0.00 0.00 0.00 3.51
2024 6600 5.452077 GGACTAGATACGGAGCAAAATGAGT 60.452 44.000 0.00 0.00 0.00 3.41
2025 6601 4.985409 GGACTAGATACGGAGCAAAATGAG 59.015 45.833 0.00 0.00 0.00 2.90
2026 6602 4.404394 TGGACTAGATACGGAGCAAAATGA 59.596 41.667 0.00 0.00 0.00 2.57
2027 6603 4.508124 GTGGACTAGATACGGAGCAAAATG 59.492 45.833 0.00 0.00 0.00 2.32
2028 6604 4.161565 TGTGGACTAGATACGGAGCAAAAT 59.838 41.667 0.00 0.00 0.00 1.82
2029 6605 3.512329 TGTGGACTAGATACGGAGCAAAA 59.488 43.478 0.00 0.00 0.00 2.44
2030 6606 3.093814 TGTGGACTAGATACGGAGCAAA 58.906 45.455 0.00 0.00 0.00 3.68
2031 6607 2.730382 TGTGGACTAGATACGGAGCAA 58.270 47.619 0.00 0.00 0.00 3.91
2032 6608 2.430248 TGTGGACTAGATACGGAGCA 57.570 50.000 0.00 0.00 0.00 4.26
2033 6609 4.760715 TCTAATGTGGACTAGATACGGAGC 59.239 45.833 0.00 0.00 0.00 4.70
2034 6610 6.879276 TTCTAATGTGGACTAGATACGGAG 57.121 41.667 0.00 0.00 0.00 4.63
2035 6611 7.724506 AGAATTCTAATGTGGACTAGATACGGA 59.275 37.037 6.06 0.00 0.00 4.69
2036 6612 7.887381 AGAATTCTAATGTGGACTAGATACGG 58.113 38.462 6.06 0.00 0.00 4.02
2037 6613 8.788806 AGAGAATTCTAATGTGGACTAGATACG 58.211 37.037 8.25 0.00 0.00 3.06
2066 6642 9.743581 TTCCTCCGTTCCTAAATATAAGTTTTT 57.256 29.630 0.00 0.00 0.00 1.94
2067 6643 9.392259 CTTCCTCCGTTCCTAAATATAAGTTTT 57.608 33.333 0.00 0.00 0.00 2.43
2068 6644 8.546322 ACTTCCTCCGTTCCTAAATATAAGTTT 58.454 33.333 0.00 0.00 0.00 2.66
2069 6645 8.087303 ACTTCCTCCGTTCCTAAATATAAGTT 57.913 34.615 0.00 0.00 0.00 2.66
2070 6646 7.672122 ACTTCCTCCGTTCCTAAATATAAGT 57.328 36.000 0.00 0.00 0.00 2.24
2071 6647 9.075678 TCTACTTCCTCCGTTCCTAAATATAAG 57.924 37.037 0.00 0.00 0.00 1.73
2072 6648 9.597681 ATCTACTTCCTCCGTTCCTAAATATAA 57.402 33.333 0.00 0.00 0.00 0.98
2073 6649 9.021807 CATCTACTTCCTCCGTTCCTAAATATA 57.978 37.037 0.00 0.00 0.00 0.86
2074 6650 7.728981 TCATCTACTTCCTCCGTTCCTAAATAT 59.271 37.037 0.00 0.00 0.00 1.28
2075 6651 7.064866 TCATCTACTTCCTCCGTTCCTAAATA 58.935 38.462 0.00 0.00 0.00 1.40
2076 6652 5.897824 TCATCTACTTCCTCCGTTCCTAAAT 59.102 40.000 0.00 0.00 0.00 1.40
2077 6653 5.266788 TCATCTACTTCCTCCGTTCCTAAA 58.733 41.667 0.00 0.00 0.00 1.85
2078 6654 4.863548 TCATCTACTTCCTCCGTTCCTAA 58.136 43.478 0.00 0.00 0.00 2.69
2079 6655 4.515028 TCATCTACTTCCTCCGTTCCTA 57.485 45.455 0.00 0.00 0.00 2.94
2080 6656 3.383698 TCATCTACTTCCTCCGTTCCT 57.616 47.619 0.00 0.00 0.00 3.36
2081 6657 4.099573 TCAATCATCTACTTCCTCCGTTCC 59.900 45.833 0.00 0.00 0.00 3.62
2082 6658 5.263968 TCAATCATCTACTTCCTCCGTTC 57.736 43.478 0.00 0.00 0.00 3.95
2083 6659 5.453903 CCATCAATCATCTACTTCCTCCGTT 60.454 44.000 0.00 0.00 0.00 4.44
2084 6660 4.039730 CCATCAATCATCTACTTCCTCCGT 59.960 45.833 0.00 0.00 0.00 4.69
2085 6661 4.562347 CCCATCAATCATCTACTTCCTCCG 60.562 50.000 0.00 0.00 0.00 4.63
2086 6662 4.263243 CCCCATCAATCATCTACTTCCTCC 60.263 50.000 0.00 0.00 0.00 4.30
2087 6663 4.805609 GCCCCATCAATCATCTACTTCCTC 60.806 50.000 0.00 0.00 0.00 3.71
2088 6664 3.073650 GCCCCATCAATCATCTACTTCCT 59.926 47.826 0.00 0.00 0.00 3.36
2089 6665 3.073650 AGCCCCATCAATCATCTACTTCC 59.926 47.826 0.00 0.00 0.00 3.46
2090 6666 4.363991 AGCCCCATCAATCATCTACTTC 57.636 45.455 0.00 0.00 0.00 3.01
2091 6667 4.288105 CCTAGCCCCATCAATCATCTACTT 59.712 45.833 0.00 0.00 0.00 2.24
2092 6668 3.843027 CCTAGCCCCATCAATCATCTACT 59.157 47.826 0.00 0.00 0.00 2.57
2093 6669 3.584848 ACCTAGCCCCATCAATCATCTAC 59.415 47.826 0.00 0.00 0.00 2.59
2094 6670 3.584406 CACCTAGCCCCATCAATCATCTA 59.416 47.826 0.00 0.00 0.00 1.98
2136 6712 7.064134 TGCATTCTTTAGTTACACCACTTATCG 59.936 37.037 0.00 0.00 0.00 2.92
2145 6721 8.169268 GTCATGTACTGCATTCTTTAGTTACAC 58.831 37.037 0.00 0.00 35.19 2.90
2156 6732 4.498241 TGAGAGTGTCATGTACTGCATTC 58.502 43.478 9.53 2.24 35.19 2.67
2167 6743 1.002888 CTGCCACCTTGAGAGTGTCAT 59.997 52.381 0.00 0.00 34.17 3.06
2172 6748 1.212935 ACAAACTGCCACCTTGAGAGT 59.787 47.619 0.00 0.00 0.00 3.24
2200 6777 1.134670 CCTCTTTAACTCCCTCTGCCG 60.135 57.143 0.00 0.00 0.00 5.69
2234 6811 1.139256 GATTTCTTCGTCCTCCCCCTC 59.861 57.143 0.00 0.00 0.00 4.30
2270 6847 0.732571 ATGCGAGTTGCCCGTAAATG 59.267 50.000 0.00 0.00 45.60 2.32
2301 6878 1.147824 CGGCCAGAGATGCTCCAAT 59.852 57.895 2.24 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.