Multiple sequence alignment - TraesCS6D01G347000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G347000 chr6D 100.000 2961 0 0 1 2961 445909851 445912811 0.000000e+00 5469
1 TraesCS6D01G347000 chr6D 89.532 812 82 3 311 1119 445819500 445818689 0.000000e+00 1026
2 TraesCS6D01G347000 chr6D 89.023 829 73 6 309 1119 445893816 445894644 0.000000e+00 1011
3 TraesCS6D01G347000 chr6D 84.041 871 107 14 1367 2215 445894636 445895496 0.000000e+00 809
4 TraesCS6D01G347000 chr6D 82.467 827 103 23 1366 2188 445839976 445840764 0.000000e+00 686
5 TraesCS6D01G347000 chr6D 81.583 695 98 22 1367 2050 445810945 445810270 5.580000e-152 547
6 TraesCS6D01G347000 chr6D 97.154 246 7 0 1121 1366 29110763 29110518 1.640000e-112 416
7 TraesCS6D01G347000 chr6D 97.154 246 7 0 1121 1366 78510564 78510809 1.640000e-112 416
8 TraesCS6D01G347000 chr6D 92.661 109 8 0 2652 2760 445809595 445809487 1.100000e-34 158
9 TraesCS6D01G347000 chr6B 89.066 1564 101 27 1367 2874 673543676 673542127 0.000000e+00 1877
10 TraesCS6D01G347000 chr6B 92.049 1069 60 9 1367 2430 673026856 673027904 0.000000e+00 1480
11 TraesCS6D01G347000 chr6B 95.716 817 32 1 308 1121 673026050 673026866 0.000000e+00 1312
12 TraesCS6D01G347000 chr6B 95.471 817 34 1 308 1121 673544482 673543666 0.000000e+00 1301
13 TraesCS6D01G347000 chr6B 89.461 816 82 3 308 1119 672627240 672626425 0.000000e+00 1027
14 TraesCS6D01G347000 chr6B 88.902 829 74 7 309 1119 672894368 672895196 0.000000e+00 1005
15 TraesCS6D01G347000 chr6B 88.902 820 85 5 305 1119 673689724 673690542 0.000000e+00 1005
16 TraesCS6D01G347000 chr6B 88.782 829 75 7 309 1119 672944944 672945772 0.000000e+00 1000
17 TraesCS6D01G347000 chr6B 84.223 862 106 19 1370 2217 673607935 673607090 0.000000e+00 811
18 TraesCS6D01G347000 chr6B 83.582 871 108 11 1367 2215 672895188 672896045 0.000000e+00 784
19 TraesCS6D01G347000 chr6B 82.072 859 102 32 1366 2215 672885232 672886047 0.000000e+00 686
20 TraesCS6D01G347000 chr6B 84.095 591 57 14 2394 2960 673027906 673028483 1.210000e-148 536
21 TraesCS6D01G347000 chr6B 95.062 162 5 1 148 306 673544701 673544540 4.900000e-63 252
22 TraesCS6D01G347000 chr6B 93.827 162 7 1 147 305 673025843 673026004 1.060000e-59 241
23 TraesCS6D01G347000 chr6B 83.981 206 19 12 2652 2856 672618295 672618103 5.040000e-43 185
24 TraesCS6D01G347000 chr6B 83.251 203 20 12 2652 2853 673699753 673699942 1.090000e-39 174
25 TraesCS6D01G347000 chr6A 84.262 1131 129 17 1367 2472 592560871 592561977 0.000000e+00 1057
26 TraesCS6D01G347000 chr6A 88.996 827 73 9 311 1119 592549708 592550534 0.000000e+00 1007
27 TraesCS6D01G347000 chr6A 85.138 868 100 17 1367 2215 592550526 592551383 0.000000e+00 861
28 TraesCS6D01G347000 chr6A 81.583 695 101 21 1367 2050 592493109 592492431 1.550000e-152 549
29 TraesCS6D01G347000 chr6A 86.239 218 16 9 2652 2866 592490772 592490566 1.070000e-54 224
30 TraesCS6D01G347000 chrUn 97.976 247 4 1 1121 1367 111199836 111200081 7.580000e-116 427
31 TraesCS6D01G347000 chr3D 97.581 248 6 0 1120 1367 272911907 272911660 2.730000e-115 425
32 TraesCS6D01G347000 chr3D 97.561 246 6 0 1121 1366 548471884 548471639 3.530000e-114 422
33 TraesCS6D01G347000 chr3D 96.748 246 8 0 1121 1366 96684898 96684653 7.640000e-111 411
34 TraesCS6D01G347000 chr7D 97.951 244 5 0 1121 1364 90837888 90838131 9.810000e-115 424
35 TraesCS6D01G347000 chr7D 96.761 247 4 3 1121 1366 80041969 80042212 2.750000e-110 409
36 TraesCS6D01G347000 chr4D 95.635 252 9 2 1115 1366 367717891 367718140 1.280000e-108 403


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G347000 chr6D 445909851 445912811 2960 False 5469.000000 5469 100.000000 1 2961 1 chr6D.!!$F3 2960
1 TraesCS6D01G347000 chr6D 445818689 445819500 811 True 1026.000000 1026 89.532000 311 1119 1 chr6D.!!$R2 808
2 TraesCS6D01G347000 chr6D 445893816 445895496 1680 False 910.000000 1011 86.532000 309 2215 2 chr6D.!!$F4 1906
3 TraesCS6D01G347000 chr6D 445839976 445840764 788 False 686.000000 686 82.467000 1366 2188 1 chr6D.!!$F2 822
4 TraesCS6D01G347000 chr6D 445809487 445810945 1458 True 352.500000 547 87.122000 1367 2760 2 chr6D.!!$R3 1393
5 TraesCS6D01G347000 chr6B 673542127 673544701 2574 True 1143.333333 1877 93.199667 148 2874 3 chr6B.!!$R4 2726
6 TraesCS6D01G347000 chr6B 672626425 672627240 815 True 1027.000000 1027 89.461000 308 1119 1 chr6B.!!$R2 811
7 TraesCS6D01G347000 chr6B 673689724 673690542 818 False 1005.000000 1005 88.902000 305 1119 1 chr6B.!!$F3 814
8 TraesCS6D01G347000 chr6B 672944944 672945772 828 False 1000.000000 1000 88.782000 309 1119 1 chr6B.!!$F2 810
9 TraesCS6D01G347000 chr6B 672894368 672896045 1677 False 894.500000 1005 86.242000 309 2215 2 chr6B.!!$F5 1906
10 TraesCS6D01G347000 chr6B 673025843 673028483 2640 False 892.250000 1480 91.421750 147 2960 4 chr6B.!!$F6 2813
11 TraesCS6D01G347000 chr6B 673607090 673607935 845 True 811.000000 811 84.223000 1370 2217 1 chr6B.!!$R3 847
12 TraesCS6D01G347000 chr6B 672885232 672886047 815 False 686.000000 686 82.072000 1366 2215 1 chr6B.!!$F1 849
13 TraesCS6D01G347000 chr6A 592560871 592561977 1106 False 1057.000000 1057 84.262000 1367 2472 1 chr6A.!!$F1 1105
14 TraesCS6D01G347000 chr6A 592549708 592551383 1675 False 934.000000 1007 87.067000 311 2215 2 chr6A.!!$F2 1904
15 TraesCS6D01G347000 chr6A 592490566 592493109 2543 True 386.500000 549 83.911000 1367 2866 2 chr6A.!!$R1 1499

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.038310 GTGAGAAACAGGGGAAGGGG 59.962 60.0 0.00 0.0 0.00 4.79 F
102 103 0.104144 TGAGAAACAGGGGAAGGGGA 60.104 55.0 0.00 0.0 0.00 4.81 F
1280 1358 0.105593 CAGGTCCAGCGCATCTGTAT 59.894 55.0 11.47 0.0 41.25 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1184 1262 0.038709 CGGCCTTCGGATCTCAGATC 60.039 60.0 6.05 6.05 34.75 2.75 R
1297 1375 0.179034 GCTTCTCGGCCATTGGATCT 60.179 55.0 6.95 0.00 0.00 2.75 R
2311 2538 0.321564 CCATGCACTTCCCGTTCTGA 60.322 55.0 0.00 0.00 0.00 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.415332 GCAGCGACGAACGGAGGA 62.415 66.667 0.00 0.00 42.83 3.71
18 19 2.202492 CAGCGACGAACGGAGGAG 60.202 66.667 0.00 0.00 42.83 3.69
19 20 4.117661 AGCGACGAACGGAGGAGC 62.118 66.667 0.00 0.00 42.83 4.70
21 22 3.796443 CGACGAACGGAGGAGCGA 61.796 66.667 0.00 0.00 38.46 4.93
22 23 2.100603 GACGAACGGAGGAGCGAG 59.899 66.667 0.00 0.00 0.00 5.03
23 24 3.398353 GACGAACGGAGGAGCGAGG 62.398 68.421 0.00 0.00 0.00 4.63
24 25 3.132139 CGAACGGAGGAGCGAGGA 61.132 66.667 0.00 0.00 0.00 3.71
25 26 2.697761 CGAACGGAGGAGCGAGGAA 61.698 63.158 0.00 0.00 0.00 3.36
26 27 1.153804 GAACGGAGGAGCGAGGAAC 60.154 63.158 0.00 0.00 0.00 3.62
27 28 2.560051 GAACGGAGGAGCGAGGAACC 62.560 65.000 0.00 0.00 0.00 3.62
28 29 3.839432 CGGAGGAGCGAGGAACCC 61.839 72.222 0.00 0.00 0.00 4.11
29 30 3.839432 GGAGGAGCGAGGAACCCG 61.839 72.222 0.00 0.00 0.00 5.28
48 49 2.954611 GGGCTTGTCGGCTGAAAC 59.045 61.111 0.00 0.00 38.46 2.78
49 50 2.626780 GGGCTTGTCGGCTGAAACC 61.627 63.158 0.00 0.00 38.46 3.27
57 58 3.351450 GGCTGAAACCGGTGGAAC 58.649 61.111 8.52 0.16 0.00 3.62
68 69 2.430367 GTGGAACCTGGTTCGCCT 59.570 61.111 28.08 0.16 42.78 5.52
69 70 1.671379 GTGGAACCTGGTTCGCCTC 60.671 63.158 28.08 17.22 42.78 4.70
70 71 2.046217 GGAACCTGGTTCGCCTCC 60.046 66.667 28.08 14.94 42.78 4.30
71 72 2.046217 GAACCTGGTTCGCCTCCC 60.046 66.667 22.67 0.11 38.36 4.30
72 73 2.529389 AACCTGGTTCGCCTCCCT 60.529 61.111 6.18 0.00 38.36 4.20
73 74 2.125766 GAACCTGGTTCGCCTCCCTT 62.126 60.000 22.67 0.00 38.36 3.95
74 75 2.125766 AACCTGGTTCGCCTCCCTTC 62.126 60.000 6.18 0.00 38.36 3.46
75 76 2.269241 CTGGTTCGCCTCCCTTCC 59.731 66.667 0.00 0.00 38.36 3.46
76 77 3.665675 CTGGTTCGCCTCCCTTCCG 62.666 68.421 0.00 0.00 38.36 4.30
87 88 4.069232 CCTTCCGCCGCTGTGAGA 62.069 66.667 0.00 0.00 0.00 3.27
88 89 2.048222 CTTCCGCCGCTGTGAGAA 60.048 61.111 0.00 0.00 0.00 2.87
89 90 1.667830 CTTCCGCCGCTGTGAGAAA 60.668 57.895 0.00 0.00 0.00 2.52
90 91 1.901650 CTTCCGCCGCTGTGAGAAAC 61.902 60.000 0.00 0.00 0.00 2.78
91 92 2.652382 TTCCGCCGCTGTGAGAAACA 62.652 55.000 0.00 0.00 37.22 2.83
100 101 0.771127 TGTGAGAAACAGGGGAAGGG 59.229 55.000 0.00 0.00 33.78 3.95
101 102 0.038310 GTGAGAAACAGGGGAAGGGG 59.962 60.000 0.00 0.00 0.00 4.79
102 103 0.104144 TGAGAAACAGGGGAAGGGGA 60.104 55.000 0.00 0.00 0.00 4.81
103 104 1.073098 GAGAAACAGGGGAAGGGGAA 58.927 55.000 0.00 0.00 0.00 3.97
104 105 0.778083 AGAAACAGGGGAAGGGGAAC 59.222 55.000 0.00 0.00 0.00 3.62
105 106 0.481128 GAAACAGGGGAAGGGGAACA 59.519 55.000 0.00 0.00 0.00 3.18
106 107 0.938192 AAACAGGGGAAGGGGAACAA 59.062 50.000 0.00 0.00 0.00 2.83
107 108 0.187606 AACAGGGGAAGGGGAACAAC 59.812 55.000 0.00 0.00 0.00 3.32
108 109 1.303317 CAGGGGAAGGGGAACAACG 60.303 63.158 0.00 0.00 0.00 4.10
109 110 1.462627 AGGGGAAGGGGAACAACGA 60.463 57.895 0.00 0.00 0.00 3.85
110 111 0.845102 AGGGGAAGGGGAACAACGAT 60.845 55.000 0.00 0.00 0.00 3.73
111 112 0.679960 GGGGAAGGGGAACAACGATG 60.680 60.000 0.00 0.00 0.00 3.84
112 113 0.679960 GGGAAGGGGAACAACGATGG 60.680 60.000 0.00 0.00 0.00 3.51
113 114 0.679960 GGAAGGGGAACAACGATGGG 60.680 60.000 0.00 0.00 0.00 4.00
114 115 0.679960 GAAGGGGAACAACGATGGGG 60.680 60.000 0.00 0.00 0.00 4.96
115 116 2.754254 GGGGAACAACGATGGGGC 60.754 66.667 0.00 0.00 0.00 5.80
116 117 2.034999 GGGAACAACGATGGGGCA 59.965 61.111 0.00 0.00 0.00 5.36
117 118 1.605165 GGGAACAACGATGGGGCAA 60.605 57.895 0.00 0.00 0.00 4.52
118 119 1.584495 GGAACAACGATGGGGCAAC 59.416 57.895 0.00 0.00 0.00 4.17
119 120 0.893727 GGAACAACGATGGGGCAACT 60.894 55.000 0.00 0.00 0.00 3.16
120 121 0.240945 GAACAACGATGGGGCAACTG 59.759 55.000 0.00 0.00 0.00 3.16
121 122 1.178534 AACAACGATGGGGCAACTGG 61.179 55.000 0.00 0.00 0.00 4.00
122 123 2.035626 AACGATGGGGCAACTGGG 59.964 61.111 0.00 0.00 0.00 4.45
123 124 2.534396 AACGATGGGGCAACTGGGA 61.534 57.895 0.00 0.00 0.00 4.37
124 125 2.124570 CGATGGGGCAACTGGGAG 60.125 66.667 0.00 0.00 0.00 4.30
125 126 2.669133 CGATGGGGCAACTGGGAGA 61.669 63.158 0.00 0.00 0.00 3.71
126 127 1.225704 GATGGGGCAACTGGGAGAG 59.774 63.158 0.00 0.00 0.00 3.20
127 128 2.900671 GATGGGGCAACTGGGAGAGC 62.901 65.000 0.00 0.00 0.00 4.09
128 129 4.432741 GGGGCAACTGGGAGAGCC 62.433 72.222 0.00 0.00 46.28 4.70
129 130 3.334054 GGGCAACTGGGAGAGCCT 61.334 66.667 0.00 0.00 46.23 4.58
130 131 2.270527 GGCAACTGGGAGAGCCTC 59.729 66.667 0.00 0.00 43.70 4.70
131 132 2.125350 GCAACTGGGAGAGCCTCG 60.125 66.667 0.00 0.00 0.00 4.63
132 133 2.948720 GCAACTGGGAGAGCCTCGT 61.949 63.158 0.00 0.00 0.00 4.18
133 134 1.079543 CAACTGGGAGAGCCTCGTG 60.080 63.158 0.00 0.00 0.00 4.35
134 135 2.948720 AACTGGGAGAGCCTCGTGC 61.949 63.158 0.00 0.00 41.71 5.34
145 146 4.749310 CTCGTGCTCGGCCTGCTT 62.749 66.667 16.66 0.00 37.69 3.91
229 230 0.803117 TCTACGTCAGAAGTCCAGCG 59.197 55.000 0.00 0.00 0.00 5.18
245 246 1.946768 CAGCGGACCAAACTGAAGAAA 59.053 47.619 0.80 0.00 33.10 2.52
277 281 4.186926 CTGGTGATGTCAGGTAATGTCAG 58.813 47.826 0.00 0.00 30.35 3.51
306 310 7.236019 TGGGGTTAAGATTACAACTGAAGTCTA 59.764 37.037 0.00 0.00 0.00 2.59
307 311 8.265764 GGGGTTAAGATTACAACTGAAGTCTAT 58.734 37.037 0.00 0.00 0.00 1.98
329 389 5.490139 TTTCTCTGCAAACTGAACTGAAG 57.510 39.130 0.00 0.00 0.00 3.02
375 450 2.596851 GGAGGCTCTGGACAAGGCA 61.597 63.158 15.23 0.00 41.51 4.75
378 453 2.343758 GCTCTGGACAAGGCACGA 59.656 61.111 0.00 0.00 0.00 4.35
457 532 4.596585 CACCGGGTGGCCTTTGGT 62.597 66.667 19.63 3.76 39.70 3.67
458 533 3.828023 ACCGGGTGGCCTTTGGTT 61.828 61.111 6.32 0.00 39.70 3.67
468 543 0.248866 GCCTTTGGTTGGACAACACG 60.249 55.000 16.13 2.40 42.85 4.49
840 918 2.048222 CGGTTGCTCCTCTTCGCA 60.048 61.111 0.00 0.00 0.00 5.10
855 933 3.430862 GCAATCTTGGCCGCGACA 61.431 61.111 8.23 2.83 0.00 4.35
897 975 1.306997 CCCTCCTGGTGGCTTCCTA 60.307 63.158 9.33 0.00 0.00 2.94
1056 1134 0.254178 CCAATCTGTACAGGCCAGCT 59.746 55.000 22.48 0.00 0.00 4.24
1110 1188 2.871633 GGTGGGCTTGTTTTGTTTGATG 59.128 45.455 0.00 0.00 0.00 3.07
1111 1189 2.871633 GTGGGCTTGTTTTGTTTGATGG 59.128 45.455 0.00 0.00 0.00 3.51
1112 1190 2.158842 TGGGCTTGTTTTGTTTGATGGG 60.159 45.455 0.00 0.00 0.00 4.00
1113 1191 2.493035 GGCTTGTTTTGTTTGATGGGG 58.507 47.619 0.00 0.00 0.00 4.96
1114 1192 2.493035 GCTTGTTTTGTTTGATGGGGG 58.507 47.619 0.00 0.00 0.00 5.40
1115 1193 2.493035 CTTGTTTTGTTTGATGGGGGC 58.507 47.619 0.00 0.00 0.00 5.80
1116 1194 0.761802 TGTTTTGTTTGATGGGGGCC 59.238 50.000 0.00 0.00 0.00 5.80
1117 1195 1.055849 GTTTTGTTTGATGGGGGCCT 58.944 50.000 0.84 0.00 0.00 5.19
1118 1196 2.252714 GTTTTGTTTGATGGGGGCCTA 58.747 47.619 0.84 0.00 0.00 3.93
1119 1197 2.837591 GTTTTGTTTGATGGGGGCCTAT 59.162 45.455 0.84 0.00 0.00 2.57
1120 1198 2.157640 TTGTTTGATGGGGGCCTATG 57.842 50.000 0.84 0.00 0.00 2.23
1121 1199 0.261402 TGTTTGATGGGGGCCTATGG 59.739 55.000 0.84 0.00 0.00 2.74
1122 1200 0.469892 GTTTGATGGGGGCCTATGGG 60.470 60.000 0.84 0.00 0.00 4.00
1123 1201 0.628968 TTTGATGGGGGCCTATGGGA 60.629 55.000 0.84 0.00 33.58 4.37
1124 1202 1.067762 TTGATGGGGGCCTATGGGAG 61.068 60.000 0.84 0.00 33.58 4.30
1136 1214 3.902881 CTATGGGAGGATATCTGGTGC 57.097 52.381 2.05 0.00 0.00 5.01
1137 1215 2.429933 ATGGGAGGATATCTGGTGCT 57.570 50.000 2.05 0.00 0.00 4.40
1138 1216 3.567375 ATGGGAGGATATCTGGTGCTA 57.433 47.619 2.05 0.00 0.00 3.49
1139 1217 2.609747 TGGGAGGATATCTGGTGCTAC 58.390 52.381 2.05 0.00 0.00 3.58
1140 1218 1.546476 GGGAGGATATCTGGTGCTACG 59.454 57.143 2.05 0.00 0.00 3.51
1141 1219 1.546476 GGAGGATATCTGGTGCTACGG 59.454 57.143 2.05 0.00 0.00 4.02
1142 1220 1.546476 GAGGATATCTGGTGCTACGGG 59.454 57.143 2.05 0.00 0.00 5.28
1143 1221 1.147191 AGGATATCTGGTGCTACGGGA 59.853 52.381 2.05 0.00 0.00 5.14
1144 1222 1.546476 GGATATCTGGTGCTACGGGAG 59.454 57.143 2.05 0.00 0.00 4.30
1156 1234 2.307768 CTACGGGAGCACCTAAGATCA 58.692 52.381 0.00 0.00 36.97 2.92
1157 1235 1.115467 ACGGGAGCACCTAAGATCAG 58.885 55.000 0.00 0.00 36.97 2.90
1158 1236 0.390860 CGGGAGCACCTAAGATCAGG 59.609 60.000 0.00 0.00 41.87 3.86
1166 1244 2.906691 CCTAAGATCAGGTGCTCCAG 57.093 55.000 7.70 0.00 35.89 3.86
1167 1245 1.415659 CCTAAGATCAGGTGCTCCAGG 59.584 57.143 7.70 0.00 35.89 4.45
1168 1246 2.392662 CTAAGATCAGGTGCTCCAGGA 58.607 52.381 7.70 4.65 35.89 3.86
1169 1247 1.202330 AAGATCAGGTGCTCCAGGAG 58.798 55.000 12.81 12.81 35.89 3.69
1180 1258 1.160137 CTCCAGGAGCTTTTCAACCG 58.840 55.000 2.60 0.00 0.00 4.44
1181 1259 0.472471 TCCAGGAGCTTTTCAACCGT 59.528 50.000 0.00 0.00 0.00 4.83
1182 1260 1.133915 TCCAGGAGCTTTTCAACCGTT 60.134 47.619 0.00 0.00 0.00 4.44
1183 1261 2.105134 TCCAGGAGCTTTTCAACCGTTA 59.895 45.455 0.00 0.00 0.00 3.18
1184 1262 2.484264 CCAGGAGCTTTTCAACCGTTAG 59.516 50.000 0.00 0.00 0.00 2.34
1185 1263 3.399330 CAGGAGCTTTTCAACCGTTAGA 58.601 45.455 0.00 0.00 0.00 2.10
1186 1264 4.003648 CAGGAGCTTTTCAACCGTTAGAT 58.996 43.478 0.00 0.00 0.00 1.98
1187 1265 4.093556 CAGGAGCTTTTCAACCGTTAGATC 59.906 45.833 0.00 0.00 0.00 2.75
1188 1266 4.020128 AGGAGCTTTTCAACCGTTAGATCT 60.020 41.667 0.00 0.00 0.00 2.75
1189 1267 4.093556 GGAGCTTTTCAACCGTTAGATCTG 59.906 45.833 5.18 0.00 0.00 2.90
1190 1268 4.894784 AGCTTTTCAACCGTTAGATCTGA 58.105 39.130 5.18 0.00 0.00 3.27
1191 1269 4.932200 AGCTTTTCAACCGTTAGATCTGAG 59.068 41.667 5.18 0.00 0.00 3.35
1192 1270 4.929808 GCTTTTCAACCGTTAGATCTGAGA 59.070 41.667 5.18 0.00 0.00 3.27
1193 1271 5.582665 GCTTTTCAACCGTTAGATCTGAGAT 59.417 40.000 5.18 0.00 0.00 2.75
1194 1272 6.237969 GCTTTTCAACCGTTAGATCTGAGATC 60.238 42.308 14.47 14.47 0.00 2.75
1195 1273 4.920640 TCAACCGTTAGATCTGAGATCC 57.079 45.455 18.29 3.21 0.00 3.36
1196 1274 3.315470 TCAACCGTTAGATCTGAGATCCG 59.685 47.826 18.29 14.27 0.00 4.18
1197 1275 3.210232 ACCGTTAGATCTGAGATCCGA 57.790 47.619 18.29 4.77 0.00 4.55
1198 1276 3.552875 ACCGTTAGATCTGAGATCCGAA 58.447 45.455 18.29 10.53 0.00 4.30
1199 1277 3.566322 ACCGTTAGATCTGAGATCCGAAG 59.434 47.826 18.29 9.59 0.00 3.79
1211 1289 2.440430 CCGAAGGCCGAGGAGAGA 60.440 66.667 8.26 0.00 46.14 3.10
1212 1290 2.485795 CCGAAGGCCGAGGAGAGAG 61.486 68.421 8.26 0.00 46.14 3.20
1213 1291 2.811799 GAAGGCCGAGGAGAGAGC 59.188 66.667 0.00 0.00 0.00 4.09
1214 1292 1.756561 GAAGGCCGAGGAGAGAGCT 60.757 63.158 0.00 0.00 0.00 4.09
1215 1293 1.734388 GAAGGCCGAGGAGAGAGCTC 61.734 65.000 5.27 5.27 40.54 4.09
1216 1294 2.441164 GGCCGAGGAGAGAGCTCA 60.441 66.667 17.77 0.00 43.14 4.26
1217 1295 2.781158 GGCCGAGGAGAGAGCTCAC 61.781 68.421 17.77 10.21 43.14 3.51
1218 1296 3.106552 CCGAGGAGAGAGCTCACG 58.893 66.667 17.77 10.77 43.14 4.35
1219 1297 2.407210 CGAGGAGAGAGCTCACGC 59.593 66.667 17.77 11.70 43.14 5.34
1233 1311 5.689383 AGCTCACGCTTTTATTCAAAGAA 57.311 34.783 0.00 0.00 46.47 2.52
1234 1312 5.452777 AGCTCACGCTTTTATTCAAAGAAC 58.547 37.500 0.00 0.00 46.47 3.01
1235 1313 5.008613 AGCTCACGCTTTTATTCAAAGAACA 59.991 36.000 0.00 0.00 46.47 3.18
1236 1314 5.115622 GCTCACGCTTTTATTCAAAGAACAC 59.884 40.000 0.00 0.00 44.40 3.32
1237 1315 5.516090 TCACGCTTTTATTCAAAGAACACC 58.484 37.500 0.00 0.00 44.40 4.16
1238 1316 4.679654 CACGCTTTTATTCAAAGAACACCC 59.320 41.667 0.00 0.00 44.40 4.61
1239 1317 4.234574 CGCTTTTATTCAAAGAACACCCC 58.765 43.478 0.00 0.00 44.40 4.95
1240 1318 4.566004 GCTTTTATTCAAAGAACACCCCC 58.434 43.478 0.00 0.00 44.40 5.40
1241 1319 4.039852 GCTTTTATTCAAAGAACACCCCCA 59.960 41.667 0.00 0.00 44.40 4.96
1242 1320 5.783111 CTTTTATTCAAAGAACACCCCCAG 58.217 41.667 0.00 0.00 44.40 4.45
1243 1321 4.733077 TTATTCAAAGAACACCCCCAGA 57.267 40.909 0.00 0.00 0.00 3.86
1244 1322 3.611025 ATTCAAAGAACACCCCCAGAA 57.389 42.857 0.00 0.00 0.00 3.02
1245 1323 3.390175 TTCAAAGAACACCCCCAGAAA 57.610 42.857 0.00 0.00 0.00 2.52
1246 1324 3.611025 TCAAAGAACACCCCCAGAAAT 57.389 42.857 0.00 0.00 0.00 2.17
1247 1325 3.922375 TCAAAGAACACCCCCAGAAATT 58.078 40.909 0.00 0.00 0.00 1.82
1248 1326 4.294347 TCAAAGAACACCCCCAGAAATTT 58.706 39.130 0.00 0.00 0.00 1.82
1249 1327 4.100808 TCAAAGAACACCCCCAGAAATTTG 59.899 41.667 0.00 0.00 0.00 2.32
1250 1328 2.608623 AGAACACCCCCAGAAATTTGG 58.391 47.619 0.00 0.00 38.00 3.28
1251 1329 2.090775 AGAACACCCCCAGAAATTTGGT 60.091 45.455 0.00 0.00 36.45 3.67
1252 1330 3.141272 AGAACACCCCCAGAAATTTGGTA 59.859 43.478 0.00 0.00 36.45 3.25
1253 1331 3.845109 ACACCCCCAGAAATTTGGTAT 57.155 42.857 0.00 0.00 36.45 2.73
1254 1332 4.140575 ACACCCCCAGAAATTTGGTATT 57.859 40.909 0.00 0.00 36.45 1.89
1255 1333 3.837731 ACACCCCCAGAAATTTGGTATTG 59.162 43.478 0.00 0.00 36.45 1.90
1256 1334 2.837591 ACCCCCAGAAATTTGGTATTGC 59.162 45.455 0.00 0.00 36.45 3.56
1257 1335 2.836981 CCCCCAGAAATTTGGTATTGCA 59.163 45.455 0.00 0.00 36.45 4.08
1258 1336 3.262915 CCCCCAGAAATTTGGTATTGCAA 59.737 43.478 0.00 0.00 36.45 4.08
1259 1337 4.263243 CCCCCAGAAATTTGGTATTGCAAA 60.263 41.667 1.71 0.00 36.45 3.68
1260 1338 5.499313 CCCCAGAAATTTGGTATTGCAAAT 58.501 37.500 1.71 0.00 36.45 2.32
1261 1339 5.585844 CCCCAGAAATTTGGTATTGCAAATC 59.414 40.000 1.71 0.00 36.45 2.17
1262 1340 6.171921 CCCAGAAATTTGGTATTGCAAATCA 58.828 36.000 1.71 0.00 36.45 2.57
1263 1341 6.314400 CCCAGAAATTTGGTATTGCAAATCAG 59.686 38.462 1.71 0.00 36.45 2.90
1264 1342 6.314400 CCAGAAATTTGGTATTGCAAATCAGG 59.686 38.462 1.71 0.00 33.38 3.86
1265 1343 6.875195 CAGAAATTTGGTATTGCAAATCAGGT 59.125 34.615 1.71 0.00 31.42 4.00
1266 1344 7.063780 CAGAAATTTGGTATTGCAAATCAGGTC 59.936 37.037 1.71 0.00 31.42 3.85
1267 1345 4.799564 TTTGGTATTGCAAATCAGGTCC 57.200 40.909 1.71 0.00 0.00 4.46
1268 1346 3.448093 TGGTATTGCAAATCAGGTCCA 57.552 42.857 1.71 2.09 0.00 4.02
1269 1347 3.355378 TGGTATTGCAAATCAGGTCCAG 58.645 45.455 1.71 0.00 0.00 3.86
1270 1348 2.099756 GGTATTGCAAATCAGGTCCAGC 59.900 50.000 1.71 0.00 0.00 4.85
1271 1349 0.813184 ATTGCAAATCAGGTCCAGCG 59.187 50.000 1.71 0.00 0.00 5.18
1272 1350 1.865788 TTGCAAATCAGGTCCAGCGC 61.866 55.000 0.00 0.00 0.00 5.92
1273 1351 2.334946 GCAAATCAGGTCCAGCGCA 61.335 57.895 11.47 0.00 0.00 6.09
1274 1352 1.660560 GCAAATCAGGTCCAGCGCAT 61.661 55.000 11.47 0.00 0.00 4.73
1275 1353 0.379669 CAAATCAGGTCCAGCGCATC 59.620 55.000 11.47 0.00 0.00 3.91
1276 1354 0.254178 AAATCAGGTCCAGCGCATCT 59.746 50.000 11.47 0.00 0.00 2.90
1277 1355 0.463295 AATCAGGTCCAGCGCATCTG 60.463 55.000 11.47 4.94 42.49 2.90
1278 1356 1.620739 ATCAGGTCCAGCGCATCTGT 61.621 55.000 11.47 0.00 41.25 3.41
1279 1357 0.970427 TCAGGTCCAGCGCATCTGTA 60.970 55.000 11.47 0.00 41.25 2.74
1280 1358 0.105593 CAGGTCCAGCGCATCTGTAT 59.894 55.000 11.47 0.00 41.25 2.29
1281 1359 1.341209 CAGGTCCAGCGCATCTGTATA 59.659 52.381 11.47 0.00 41.25 1.47
1282 1360 2.028658 CAGGTCCAGCGCATCTGTATAT 60.029 50.000 11.47 0.00 41.25 0.86
1283 1361 2.028658 AGGTCCAGCGCATCTGTATATG 60.029 50.000 11.47 0.00 41.25 1.78
1284 1362 2.029020 GGTCCAGCGCATCTGTATATGA 60.029 50.000 11.47 0.00 41.25 2.15
1285 1363 2.989840 GTCCAGCGCATCTGTATATGAC 59.010 50.000 11.47 0.00 41.25 3.06
1286 1364 2.029020 TCCAGCGCATCTGTATATGACC 60.029 50.000 11.47 0.00 41.25 4.02
1287 1365 1.988467 CAGCGCATCTGTATATGACCG 59.012 52.381 11.47 0.00 38.02 4.79
1288 1366 1.613925 AGCGCATCTGTATATGACCGT 59.386 47.619 11.47 0.00 0.00 4.83
1289 1367 2.035961 AGCGCATCTGTATATGACCGTT 59.964 45.455 11.47 0.00 0.00 4.44
1290 1368 2.155732 GCGCATCTGTATATGACCGTTG 59.844 50.000 0.30 0.00 0.00 4.10
1291 1369 2.731451 CGCATCTGTATATGACCGTTGG 59.269 50.000 0.00 0.00 0.00 3.77
1292 1370 3.552068 CGCATCTGTATATGACCGTTGGA 60.552 47.826 0.00 0.00 0.00 3.53
1293 1371 4.569943 GCATCTGTATATGACCGTTGGAT 58.430 43.478 0.00 0.00 0.00 3.41
1294 1372 4.997395 GCATCTGTATATGACCGTTGGATT 59.003 41.667 0.00 0.00 0.00 3.01
1295 1373 5.470098 GCATCTGTATATGACCGTTGGATTT 59.530 40.000 0.00 0.00 0.00 2.17
1296 1374 6.347725 GCATCTGTATATGACCGTTGGATTTC 60.348 42.308 0.00 0.00 0.00 2.17
1297 1375 6.228616 TCTGTATATGACCGTTGGATTTCA 57.771 37.500 0.00 0.00 0.00 2.69
1298 1376 6.280643 TCTGTATATGACCGTTGGATTTCAG 58.719 40.000 0.00 0.00 0.00 3.02
1299 1377 6.097696 TCTGTATATGACCGTTGGATTTCAGA 59.902 38.462 0.00 0.00 0.00 3.27
1300 1378 6.826668 TGTATATGACCGTTGGATTTCAGAT 58.173 36.000 0.00 0.00 0.00 2.90
1301 1379 6.929049 TGTATATGACCGTTGGATTTCAGATC 59.071 38.462 0.00 0.00 0.00 2.75
1302 1380 2.985896 TGACCGTTGGATTTCAGATCC 58.014 47.619 0.00 0.00 38.66 3.36
1303 1381 2.304470 TGACCGTTGGATTTCAGATCCA 59.696 45.455 3.70 3.70 45.71 3.41
1309 1387 2.669781 TGGATTTCAGATCCAATGGCC 58.330 47.619 5.31 0.00 44.54 5.36
1310 1388 1.610522 GGATTTCAGATCCAATGGCCG 59.389 52.381 0.00 0.00 38.09 6.13
1311 1389 2.575532 GATTTCAGATCCAATGGCCGA 58.424 47.619 0.00 0.00 0.00 5.54
1312 1390 2.042686 TTTCAGATCCAATGGCCGAG 57.957 50.000 0.00 0.00 0.00 4.63
1313 1391 1.203237 TTCAGATCCAATGGCCGAGA 58.797 50.000 0.00 0.00 0.00 4.04
1314 1392 1.203237 TCAGATCCAATGGCCGAGAA 58.797 50.000 0.00 0.00 0.00 2.87
1315 1393 1.139654 TCAGATCCAATGGCCGAGAAG 59.860 52.381 0.00 0.00 0.00 2.85
1316 1394 0.179034 AGATCCAATGGCCGAGAAGC 60.179 55.000 0.00 0.00 0.00 3.86
1317 1395 0.179034 GATCCAATGGCCGAGAAGCT 60.179 55.000 0.00 0.00 0.00 3.74
1318 1396 0.179034 ATCCAATGGCCGAGAAGCTC 60.179 55.000 0.00 0.00 0.00 4.09
1319 1397 1.222936 CCAATGGCCGAGAAGCTCT 59.777 57.895 0.00 0.00 0.00 4.09
1320 1398 0.393537 CCAATGGCCGAGAAGCTCTT 60.394 55.000 0.00 0.00 0.00 2.85
1321 1399 0.731417 CAATGGCCGAGAAGCTCTTG 59.269 55.000 0.00 0.00 0.00 3.02
1346 1424 2.311124 CCTAAACTTAGGTGCTCCCG 57.689 55.000 7.28 0.00 44.26 5.14
1347 1425 1.553704 CCTAAACTTAGGTGCTCCCGT 59.446 52.381 7.28 0.00 44.26 5.28
1348 1426 2.762327 CCTAAACTTAGGTGCTCCCGTA 59.238 50.000 7.28 0.00 44.26 4.02
1349 1427 3.181478 CCTAAACTTAGGTGCTCCCGTAG 60.181 52.174 7.28 0.00 44.26 3.51
1350 1428 6.760290 CCTAAACTTAGGTGCTCCCGTAGC 62.760 54.167 7.28 0.24 45.27 3.58
1361 1439 3.753294 CTCCCGTAGCACCTGATATTT 57.247 47.619 0.00 0.00 0.00 1.40
1362 1440 4.073293 CTCCCGTAGCACCTGATATTTT 57.927 45.455 0.00 0.00 0.00 1.82
1363 1441 4.058817 CTCCCGTAGCACCTGATATTTTC 58.941 47.826 0.00 0.00 0.00 2.29
1364 1442 3.139077 CCCGTAGCACCTGATATTTTCC 58.861 50.000 0.00 0.00 0.00 3.13
1470 1548 1.089920 GTTGGACTGCTGCTGGTATG 58.910 55.000 11.29 0.00 0.00 2.39
1500 1578 1.404391 GGAGCAGAACAATGATGGCAG 59.596 52.381 0.00 0.00 0.00 4.85
1515 1593 1.285023 GCAGTTCAGCAGCTGTTGG 59.715 57.895 27.53 14.20 35.33 3.77
1581 1680 6.400096 AAGGAAGGAGGATGAAGAAGAAAT 57.600 37.500 0.00 0.00 0.00 2.17
1588 1711 6.883756 AGGAGGATGAAGAAGAAATGAAGAAC 59.116 38.462 0.00 0.00 0.00 3.01
1650 1773 0.613777 GCAAGTGTAGCCTACCAGGT 59.386 55.000 0.00 0.00 37.80 4.00
1867 1991 0.250513 AGAAATGGTCGCTGAGGGTC 59.749 55.000 0.00 0.00 0.00 4.46
2010 2138 0.798776 CAATCCACACGAAGCTGTCC 59.201 55.000 0.00 0.00 0.00 4.02
2024 2152 5.363101 GAAGCTGTCCATATGTTCTGATCA 58.637 41.667 1.24 0.00 0.00 2.92
2111 2296 7.601508 GGTCAGTAGTTTGTTTTAGCTTAGCTA 59.398 37.037 10.21 10.21 40.44 3.32
2140 2358 8.750298 CCTGTTTTTAGATTCCTAGTCTAGTCA 58.250 37.037 6.15 0.00 30.45 3.41
2218 2444 1.001517 TGGGCAAGTGTGTGTGTGT 60.002 52.632 0.00 0.00 0.00 3.72
2219 2445 1.311651 TGGGCAAGTGTGTGTGTGTG 61.312 55.000 0.00 0.00 0.00 3.82
2220 2446 1.312371 GGGCAAGTGTGTGTGTGTGT 61.312 55.000 0.00 0.00 0.00 3.72
2221 2447 0.179166 GGCAAGTGTGTGTGTGTGTG 60.179 55.000 0.00 0.00 0.00 3.82
2222 2448 0.801872 GCAAGTGTGTGTGTGTGTGA 59.198 50.000 0.00 0.00 0.00 3.58
2223 2449 1.401552 GCAAGTGTGTGTGTGTGTGAT 59.598 47.619 0.00 0.00 0.00 3.06
2263 2489 5.771666 CCAATGAATATGCAAGGTAGGTGAT 59.228 40.000 0.00 0.00 0.00 3.06
2267 2494 6.894682 TGAATATGCAAGGTAGGTGATGTTA 58.105 36.000 0.00 0.00 0.00 2.41
2295 2522 6.155221 TGAACCTATGTGCACTTTCTATCTCT 59.845 38.462 19.41 0.00 0.00 3.10
2296 2523 6.155475 ACCTATGTGCACTTTCTATCTCTC 57.845 41.667 19.41 0.00 0.00 3.20
2308 2535 9.179909 CACTTTCTATCTCTCAGTAGGAACTTA 57.820 37.037 0.00 0.00 41.75 2.24
2309 2536 9.756571 ACTTTCTATCTCTCAGTAGGAACTTAA 57.243 33.333 0.00 0.00 41.75 1.85
2311 2538 9.756571 TTTCTATCTCTCAGTAGGAACTTAACT 57.243 33.333 0.00 0.00 41.75 2.24
2312 2539 8.967664 TCTATCTCTCAGTAGGAACTTAACTC 57.032 38.462 0.00 0.00 41.75 3.01
2313 2540 8.549731 TCTATCTCTCAGTAGGAACTTAACTCA 58.450 37.037 0.00 0.00 41.75 3.41
2317 2544 7.175293 TCTCTCAGTAGGAACTTAACTCAGAAC 59.825 40.741 0.00 0.00 41.75 3.01
2335 2562 0.680921 ACGGGAAGTGCATGGATTGG 60.681 55.000 0.00 0.00 0.00 3.16
2376 2603 4.378459 GGAAACTGAACCATTTGTCGCTAG 60.378 45.833 0.00 0.00 0.00 3.42
2388 2615 6.183360 CCATTTGTCGCTAGTAAAACCTACTG 60.183 42.308 0.00 0.00 0.00 2.74
2417 2652 7.094334 TGTCACTAGGTACAGAAGTATTGAGTG 60.094 40.741 0.00 0.00 37.26 3.51
2437 3690 6.163135 AGTGATCCTAATAGTAACCACTGC 57.837 41.667 0.00 0.00 36.14 4.40
2445 3698 2.016905 AGTAACCACTGCTCTGGTCT 57.983 50.000 6.36 0.00 44.32 3.85
2446 3699 2.330216 AGTAACCACTGCTCTGGTCTT 58.670 47.619 6.36 0.00 44.32 3.01
2490 3751 3.777925 CCGACTTCAACGGCGCAG 61.778 66.667 10.83 8.25 43.74 5.18
2610 3876 2.432146 TGAGTACCATGGAGCATCAGAC 59.568 50.000 21.47 3.01 36.25 3.51
2611 3877 1.410517 AGTACCATGGAGCATCAGACG 59.589 52.381 21.47 0.00 36.25 4.18
2618 3891 0.175760 GGAGCATCAGACGTTGGCTA 59.824 55.000 0.00 0.00 36.25 3.93
2626 3899 3.472652 TCAGACGTTGGCTACATTTTGT 58.527 40.909 0.00 0.00 0.00 2.83
2641 3914 5.397360 ACATTTTGTTTGGAGAGGATTCCT 58.603 37.500 4.44 4.44 38.12 3.36
2663 3972 2.268920 CGTGGGTGGATGGTGAGG 59.731 66.667 0.00 0.00 0.00 3.86
2755 4064 1.710013 TTCGATCTTCCACACGAAGC 58.290 50.000 0.00 0.00 46.60 3.86
2763 4072 3.345808 CACACGAAGCACACGGGG 61.346 66.667 0.00 0.00 38.55 5.73
2886 4209 0.733909 CTGCGCGTCAAGAGTGATCA 60.734 55.000 8.43 0.00 35.80 2.92
2898 4221 3.286353 AGAGTGATCAAGAGCGAGATGA 58.714 45.455 0.00 0.00 0.00 2.92
2929 4252 4.781959 CCCATTTGCTGTGCGCGG 62.782 66.667 8.83 0.38 43.27 6.46
2960 4283 1.508088 CGCCAATGAGGAGTTTGCC 59.492 57.895 0.00 0.00 41.22 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.415332 TCCTCCGTTCGTCGCTGC 62.415 66.667 0.00 0.00 38.35 5.25
1 2 2.202492 CTCCTCCGTTCGTCGCTG 60.202 66.667 0.00 0.00 38.35 5.18
2 3 4.117661 GCTCCTCCGTTCGTCGCT 62.118 66.667 0.00 0.00 38.35 4.93
5 6 2.100603 CTCGCTCCTCCGTTCGTC 59.899 66.667 0.00 0.00 0.00 4.20
6 7 3.441290 CCTCGCTCCTCCGTTCGT 61.441 66.667 0.00 0.00 0.00 3.85
7 8 2.697761 TTCCTCGCTCCTCCGTTCG 61.698 63.158 0.00 0.00 0.00 3.95
8 9 1.153804 GTTCCTCGCTCCTCCGTTC 60.154 63.158 0.00 0.00 0.00 3.95
9 10 2.647158 GGTTCCTCGCTCCTCCGTT 61.647 63.158 0.00 0.00 0.00 4.44
10 11 3.069318 GGTTCCTCGCTCCTCCGT 61.069 66.667 0.00 0.00 0.00 4.69
11 12 3.839432 GGGTTCCTCGCTCCTCCG 61.839 72.222 0.00 0.00 0.00 4.63
12 13 3.839432 CGGGTTCCTCGCTCCTCC 61.839 72.222 0.00 0.00 0.00 4.30
30 31 2.668212 TTTCAGCCGACAAGCCCG 60.668 61.111 0.00 0.00 0.00 6.13
31 32 2.626780 GGTTTCAGCCGACAAGCCC 61.627 63.158 0.00 0.00 0.00 5.19
32 33 2.954611 GGTTTCAGCCGACAAGCC 59.045 61.111 0.00 0.00 0.00 4.35
40 41 2.265904 GGTTCCACCGGTTTCAGCC 61.266 63.158 2.97 0.00 0.00 4.85
41 42 1.228154 AGGTTCCACCGGTTTCAGC 60.228 57.895 2.97 0.20 44.90 4.26
42 43 0.889186 CCAGGTTCCACCGGTTTCAG 60.889 60.000 2.97 0.00 44.90 3.02
43 44 1.149627 CCAGGTTCCACCGGTTTCA 59.850 57.895 2.97 0.00 44.90 2.69
44 45 0.466739 AACCAGGTTCCACCGGTTTC 60.467 55.000 2.97 0.00 45.77 2.78
45 46 0.466739 GAACCAGGTTCCACCGGTTT 60.467 55.000 20.57 0.00 46.93 3.27
46 47 3.337930 AACCAGGTTCCACCGGTT 58.662 55.556 2.97 13.24 44.90 4.44
47 48 2.833957 GAACCAGGTTCCACCGGT 59.166 61.111 20.57 0.00 44.90 5.28
48 49 2.358247 CGAACCAGGTTCCACCGG 60.358 66.667 24.33 0.00 44.90 5.28
49 50 3.047877 GCGAACCAGGTTCCACCG 61.048 66.667 24.33 15.42 44.90 4.94
50 51 2.671963 GGCGAACCAGGTTCCACC 60.672 66.667 24.33 21.41 39.14 4.61
51 52 1.671379 GAGGCGAACCAGGTTCCAC 60.671 63.158 24.33 17.41 39.14 4.02
52 53 2.747686 GAGGCGAACCAGGTTCCA 59.252 61.111 24.33 0.00 39.14 3.53
53 54 2.046217 GGAGGCGAACCAGGTTCC 60.046 66.667 24.33 16.99 39.14 3.62
54 55 2.046217 GGGAGGCGAACCAGGTTC 60.046 66.667 21.18 21.18 38.97 3.62
55 56 2.125766 GAAGGGAGGCGAACCAGGTT 62.126 60.000 3.79 3.79 39.06 3.50
56 57 2.529389 AAGGGAGGCGAACCAGGT 60.529 61.111 0.00 0.00 39.06 4.00
57 58 2.269241 GAAGGGAGGCGAACCAGG 59.731 66.667 0.00 0.00 39.06 4.45
58 59 2.269241 GGAAGGGAGGCGAACCAG 59.731 66.667 0.00 0.00 39.06 4.00
59 60 3.702048 CGGAAGGGAGGCGAACCA 61.702 66.667 0.00 0.00 39.06 3.67
70 71 3.589654 TTCTCACAGCGGCGGAAGG 62.590 63.158 9.78 0.00 0.00 3.46
71 72 1.667830 TTTCTCACAGCGGCGGAAG 60.668 57.895 9.78 4.19 0.00 3.46
72 73 1.959226 GTTTCTCACAGCGGCGGAA 60.959 57.895 9.78 0.00 0.00 4.30
73 74 2.357034 GTTTCTCACAGCGGCGGA 60.357 61.111 9.78 0.00 0.00 5.54
74 75 2.664851 TGTTTCTCACAGCGGCGG 60.665 61.111 9.78 0.00 0.00 6.13
75 76 2.856032 CTGTTTCTCACAGCGGCG 59.144 61.111 0.51 0.51 46.70 6.46
81 82 0.771127 CCCTTCCCCTGTTTCTCACA 59.229 55.000 0.00 0.00 0.00 3.58
82 83 0.038310 CCCCTTCCCCTGTTTCTCAC 59.962 60.000 0.00 0.00 0.00 3.51
83 84 0.104144 TCCCCTTCCCCTGTTTCTCA 60.104 55.000 0.00 0.00 0.00 3.27
84 85 1.073098 TTCCCCTTCCCCTGTTTCTC 58.927 55.000 0.00 0.00 0.00 2.87
85 86 0.778083 GTTCCCCTTCCCCTGTTTCT 59.222 55.000 0.00 0.00 0.00 2.52
86 87 0.481128 TGTTCCCCTTCCCCTGTTTC 59.519 55.000 0.00 0.00 0.00 2.78
87 88 0.938192 TTGTTCCCCTTCCCCTGTTT 59.062 50.000 0.00 0.00 0.00 2.83
88 89 0.187606 GTTGTTCCCCTTCCCCTGTT 59.812 55.000 0.00 0.00 0.00 3.16
89 90 1.851267 GTTGTTCCCCTTCCCCTGT 59.149 57.895 0.00 0.00 0.00 4.00
90 91 1.303317 CGTTGTTCCCCTTCCCCTG 60.303 63.158 0.00 0.00 0.00 4.45
91 92 0.845102 ATCGTTGTTCCCCTTCCCCT 60.845 55.000 0.00 0.00 0.00 4.79
92 93 0.679960 CATCGTTGTTCCCCTTCCCC 60.680 60.000 0.00 0.00 0.00 4.81
93 94 0.679960 CCATCGTTGTTCCCCTTCCC 60.680 60.000 0.00 0.00 0.00 3.97
94 95 0.679960 CCCATCGTTGTTCCCCTTCC 60.680 60.000 0.00 0.00 0.00 3.46
95 96 0.679960 CCCCATCGTTGTTCCCCTTC 60.680 60.000 0.00 0.00 0.00 3.46
96 97 1.382629 CCCCATCGTTGTTCCCCTT 59.617 57.895 0.00 0.00 0.00 3.95
97 98 3.087065 CCCCATCGTTGTTCCCCT 58.913 61.111 0.00 0.00 0.00 4.79
98 99 2.754254 GCCCCATCGTTGTTCCCC 60.754 66.667 0.00 0.00 0.00 4.81
99 100 1.605165 TTGCCCCATCGTTGTTCCC 60.605 57.895 0.00 0.00 0.00 3.97
100 101 0.893727 AGTTGCCCCATCGTTGTTCC 60.894 55.000 0.00 0.00 0.00 3.62
101 102 0.240945 CAGTTGCCCCATCGTTGTTC 59.759 55.000 0.00 0.00 0.00 3.18
102 103 1.178534 CCAGTTGCCCCATCGTTGTT 61.179 55.000 0.00 0.00 0.00 2.83
103 104 1.603455 CCAGTTGCCCCATCGTTGT 60.603 57.895 0.00 0.00 0.00 3.32
104 105 2.342650 CCCAGTTGCCCCATCGTTG 61.343 63.158 0.00 0.00 0.00 4.10
105 106 2.035626 CCCAGTTGCCCCATCGTT 59.964 61.111 0.00 0.00 0.00 3.85
106 107 2.933287 TCCCAGTTGCCCCATCGT 60.933 61.111 0.00 0.00 0.00 3.73
107 108 2.124570 CTCCCAGTTGCCCCATCG 60.125 66.667 0.00 0.00 0.00 3.84
108 109 1.225704 CTCTCCCAGTTGCCCCATC 59.774 63.158 0.00 0.00 0.00 3.51
109 110 2.988839 GCTCTCCCAGTTGCCCCAT 61.989 63.158 0.00 0.00 0.00 4.00
110 111 3.650950 GCTCTCCCAGTTGCCCCA 61.651 66.667 0.00 0.00 0.00 4.96
111 112 4.432741 GGCTCTCCCAGTTGCCCC 62.433 72.222 0.00 0.00 39.49 5.80
112 113 3.334054 AGGCTCTCCCAGTTGCCC 61.334 66.667 0.00 0.00 45.94 5.36
113 114 2.270527 GAGGCTCTCCCAGTTGCC 59.729 66.667 7.40 0.00 45.21 4.52
114 115 2.125350 CGAGGCTCTCCCAGTTGC 60.125 66.667 13.50 0.00 35.39 4.17
115 116 1.079543 CACGAGGCTCTCCCAGTTG 60.080 63.158 13.50 0.00 35.39 3.16
116 117 2.948720 GCACGAGGCTCTCCCAGTT 61.949 63.158 13.50 0.00 40.25 3.16
117 118 3.386237 GCACGAGGCTCTCCCAGT 61.386 66.667 13.50 0.00 40.25 4.00
128 129 4.749310 AAGCAGGCCGAGCACGAG 62.749 66.667 22.53 0.00 42.66 4.18
129 130 4.742201 GAAGCAGGCCGAGCACGA 62.742 66.667 22.53 0.00 42.66 4.35
131 132 3.426568 GTGAAGCAGGCCGAGCAC 61.427 66.667 22.53 16.30 0.00 4.40
132 133 3.258228 ATGTGAAGCAGGCCGAGCA 62.258 57.895 22.53 4.56 0.00 4.26
133 134 2.437359 ATGTGAAGCAGGCCGAGC 60.437 61.111 14.50 14.50 0.00 5.03
134 135 0.463295 ATGATGTGAAGCAGGCCGAG 60.463 55.000 0.00 0.00 0.00 4.63
135 136 0.462581 GATGATGTGAAGCAGGCCGA 60.463 55.000 0.00 0.00 0.00 5.54
136 137 1.442526 GGATGATGTGAAGCAGGCCG 61.443 60.000 0.00 0.00 0.00 6.13
137 138 0.106819 AGGATGATGTGAAGCAGGCC 60.107 55.000 0.00 0.00 0.00 5.19
138 139 2.158842 AGTAGGATGATGTGAAGCAGGC 60.159 50.000 0.00 0.00 0.00 4.85
139 140 3.387374 AGAGTAGGATGATGTGAAGCAGG 59.613 47.826 0.00 0.00 0.00 4.85
140 141 4.669206 AGAGTAGGATGATGTGAAGCAG 57.331 45.455 0.00 0.00 0.00 4.24
141 142 5.600069 ACATAGAGTAGGATGATGTGAAGCA 59.400 40.000 0.00 0.00 29.75 3.91
142 143 6.015519 AGACATAGAGTAGGATGATGTGAAGC 60.016 42.308 0.00 0.00 31.03 3.86
143 144 7.523293 AGACATAGAGTAGGATGATGTGAAG 57.477 40.000 0.00 0.00 31.03 3.02
144 145 9.018582 CATAGACATAGAGTAGGATGATGTGAA 57.981 37.037 0.00 0.00 31.03 3.18
145 146 7.613411 CCATAGACATAGAGTAGGATGATGTGA 59.387 40.741 0.00 0.00 31.03 3.58
245 246 0.330604 ACATCACCAGCCTGCTGAAT 59.669 50.000 20.29 8.02 46.30 2.57
277 281 5.310451 TCAGTTGTAATCTTAACCCCACAC 58.690 41.667 0.00 0.00 0.00 3.82
306 310 5.591877 ACTTCAGTTCAGTTTGCAGAGAAAT 59.408 36.000 0.00 0.00 0.00 2.17
307 311 4.943705 ACTTCAGTTCAGTTTGCAGAGAAA 59.056 37.500 0.00 0.00 0.00 2.52
329 389 4.376146 ACTGCAGAGAAGAAGAAACAGAC 58.624 43.478 23.35 0.00 0.00 3.51
375 450 4.437659 GCGAGAAGTAGAACAAGAGATCGT 60.438 45.833 0.00 0.00 0.00 3.73
378 453 3.764434 TGGCGAGAAGTAGAACAAGAGAT 59.236 43.478 0.00 0.00 0.00 2.75
457 532 1.227321 GTCCGTCCGTGTTGTCCAA 60.227 57.895 0.00 0.00 0.00 3.53
458 533 2.418356 GTCCGTCCGTGTTGTCCA 59.582 61.111 0.00 0.00 0.00 4.02
811 889 3.960237 CAACCGTTTGCGCCTCTA 58.040 55.556 4.18 0.00 36.67 2.43
840 918 1.400494 GTAATTGTCGCGGCCAAGATT 59.600 47.619 8.89 6.11 0.00 2.40
855 933 0.106868 GGCCGGCTTGGTAGGTAATT 60.107 55.000 28.56 0.00 41.21 1.40
897 975 1.004044 CCAAGCTTGTCATCCTGGAGT 59.996 52.381 24.35 0.00 0.00 3.85
1056 1134 5.842907 ACAGATAGTGCATTGCTTCGTATA 58.157 37.500 10.49 0.00 0.00 1.47
1110 1188 0.046397 ATATCCTCCCATAGGCCCCC 59.954 60.000 0.00 0.00 46.10 5.40
1111 1189 1.010170 AGATATCCTCCCATAGGCCCC 59.990 57.143 0.00 0.00 46.10 5.80
1112 1190 2.122768 CAGATATCCTCCCATAGGCCC 58.877 57.143 0.00 0.00 46.10 5.80
1113 1191 2.122768 CCAGATATCCTCCCATAGGCC 58.877 57.143 0.00 0.00 46.10 5.19
1114 1192 2.503356 CACCAGATATCCTCCCATAGGC 59.497 54.545 0.00 0.00 46.10 3.93
1116 1194 3.448934 AGCACCAGATATCCTCCCATAG 58.551 50.000 0.00 0.00 0.00 2.23
1117 1195 3.567375 AGCACCAGATATCCTCCCATA 57.433 47.619 0.00 0.00 0.00 2.74
1118 1196 2.429933 AGCACCAGATATCCTCCCAT 57.570 50.000 0.00 0.00 0.00 4.00
1119 1197 2.609747 GTAGCACCAGATATCCTCCCA 58.390 52.381 0.00 0.00 0.00 4.37
1120 1198 1.546476 CGTAGCACCAGATATCCTCCC 59.454 57.143 0.00 0.00 0.00 4.30
1121 1199 1.546476 CCGTAGCACCAGATATCCTCC 59.454 57.143 0.00 0.00 0.00 4.30
1122 1200 1.546476 CCCGTAGCACCAGATATCCTC 59.454 57.143 0.00 0.00 0.00 3.71
1123 1201 1.147191 TCCCGTAGCACCAGATATCCT 59.853 52.381 0.00 0.00 0.00 3.24
1124 1202 1.546476 CTCCCGTAGCACCAGATATCC 59.454 57.143 0.00 0.00 0.00 2.59
1136 1214 2.294791 CTGATCTTAGGTGCTCCCGTAG 59.705 54.545 0.00 0.00 38.74 3.51
1137 1215 2.307768 CTGATCTTAGGTGCTCCCGTA 58.692 52.381 0.00 0.00 38.74 4.02
1138 1216 1.115467 CTGATCTTAGGTGCTCCCGT 58.885 55.000 0.00 0.00 38.74 5.28
1139 1217 0.390860 CCTGATCTTAGGTGCTCCCG 59.609 60.000 0.00 0.00 38.74 5.14
1147 1225 1.415659 CCTGGAGCACCTGATCTTAGG 59.584 57.143 8.65 0.00 43.71 2.69
1148 1226 2.364970 CTCCTGGAGCACCTGATCTTAG 59.635 54.545 11.42 0.00 37.31 2.18
1149 1227 2.392662 CTCCTGGAGCACCTGATCTTA 58.607 52.381 11.42 0.00 37.31 2.10
1150 1228 1.202330 CTCCTGGAGCACCTGATCTT 58.798 55.000 11.42 0.00 37.31 2.40
1151 1229 2.913463 CTCCTGGAGCACCTGATCT 58.087 57.895 11.42 0.00 37.31 2.75
1161 1239 1.160137 CGGTTGAAAAGCTCCTGGAG 58.840 55.000 19.55 19.55 43.41 3.86
1162 1240 0.472471 ACGGTTGAAAAGCTCCTGGA 59.528 50.000 0.00 0.00 43.41 3.86
1163 1241 1.318576 AACGGTTGAAAAGCTCCTGG 58.681 50.000 0.00 0.00 43.41 4.45
1164 1242 3.399330 TCTAACGGTTGAAAAGCTCCTG 58.601 45.455 3.07 0.00 43.41 3.86
1165 1243 3.764237 TCTAACGGTTGAAAAGCTCCT 57.236 42.857 3.07 0.00 43.41 3.69
1166 1244 4.093556 CAGATCTAACGGTTGAAAAGCTCC 59.906 45.833 3.07 0.00 43.41 4.70
1167 1245 4.929808 TCAGATCTAACGGTTGAAAAGCTC 59.070 41.667 3.07 0.00 43.41 4.09
1168 1246 4.894784 TCAGATCTAACGGTTGAAAAGCT 58.105 39.130 3.07 0.00 43.41 3.74
1169 1247 4.929808 TCTCAGATCTAACGGTTGAAAAGC 59.070 41.667 3.07 0.00 41.84 3.51
1170 1248 6.256757 GGATCTCAGATCTAACGGTTGAAAAG 59.743 42.308 14.54 0.00 0.00 2.27
1171 1249 6.106673 GGATCTCAGATCTAACGGTTGAAAA 58.893 40.000 14.54 0.00 0.00 2.29
1172 1250 5.661458 GGATCTCAGATCTAACGGTTGAAA 58.339 41.667 14.54 0.00 0.00 2.69
1173 1251 4.202020 CGGATCTCAGATCTAACGGTTGAA 60.202 45.833 14.54 0.00 0.00 2.69
1174 1252 3.315470 CGGATCTCAGATCTAACGGTTGA 59.685 47.826 14.54 0.00 0.00 3.18
1175 1253 3.315470 TCGGATCTCAGATCTAACGGTTG 59.685 47.826 14.54 0.00 0.00 3.77
1176 1254 3.552875 TCGGATCTCAGATCTAACGGTT 58.447 45.455 14.54 0.00 0.00 4.44
1177 1255 3.210232 TCGGATCTCAGATCTAACGGT 57.790 47.619 14.54 0.00 0.00 4.83
1178 1256 3.057876 CCTTCGGATCTCAGATCTAACGG 60.058 52.174 14.54 6.34 0.00 4.44
1179 1257 3.610585 GCCTTCGGATCTCAGATCTAACG 60.611 52.174 14.54 9.70 0.00 3.18
1180 1258 3.305744 GGCCTTCGGATCTCAGATCTAAC 60.306 52.174 14.54 0.00 0.00 2.34
1181 1259 2.894126 GGCCTTCGGATCTCAGATCTAA 59.106 50.000 14.54 8.40 0.00 2.10
1182 1260 2.520069 GGCCTTCGGATCTCAGATCTA 58.480 52.381 14.54 0.56 0.00 1.98
1183 1261 1.337118 GGCCTTCGGATCTCAGATCT 58.663 55.000 14.54 0.00 0.00 2.75
1184 1262 0.038709 CGGCCTTCGGATCTCAGATC 60.039 60.000 6.05 6.05 34.75 2.75
1185 1263 0.468214 TCGGCCTTCGGATCTCAGAT 60.468 55.000 0.00 0.00 39.77 2.90
1186 1264 1.076995 TCGGCCTTCGGATCTCAGA 60.077 57.895 0.00 0.00 39.77 3.27
1187 1265 1.361993 CTCGGCCTTCGGATCTCAG 59.638 63.158 0.00 0.00 39.77 3.35
1188 1266 2.127869 CCTCGGCCTTCGGATCTCA 61.128 63.158 0.00 0.00 39.77 3.27
1189 1267 1.801309 CTCCTCGGCCTTCGGATCTC 61.801 65.000 0.00 0.00 39.77 2.75
1190 1268 1.830408 CTCCTCGGCCTTCGGATCT 60.830 63.158 0.00 0.00 39.77 2.75
1191 1269 1.801309 CTCTCCTCGGCCTTCGGATC 61.801 65.000 0.00 0.00 39.77 3.36
1192 1270 1.830408 CTCTCCTCGGCCTTCGGAT 60.830 63.158 0.00 0.00 39.77 4.18
1193 1271 2.440430 CTCTCCTCGGCCTTCGGA 60.440 66.667 0.00 2.49 39.77 4.55
1194 1272 2.440430 TCTCTCCTCGGCCTTCGG 60.440 66.667 0.00 0.00 39.77 4.30
1195 1273 3.115556 CTCTCTCCTCGGCCTTCG 58.884 66.667 0.00 0.00 40.90 3.79
1196 1274 1.734388 GAGCTCTCTCCTCGGCCTTC 61.734 65.000 6.43 0.00 33.19 3.46
1197 1275 1.756561 GAGCTCTCTCCTCGGCCTT 60.757 63.158 6.43 0.00 33.19 4.35
1198 1276 2.123897 GAGCTCTCTCCTCGGCCT 60.124 66.667 6.43 0.00 33.19 5.19
1199 1277 2.441164 TGAGCTCTCTCCTCGGCC 60.441 66.667 16.19 0.00 38.58 6.13
1200 1278 2.804856 GTGAGCTCTCTCCTCGGC 59.195 66.667 16.19 0.00 38.58 5.54
1201 1279 3.106552 CGTGAGCTCTCTCCTCGG 58.893 66.667 16.19 0.00 38.58 4.63
1213 1291 5.625311 GGTGTTCTTTGAATAAAAGCGTGAG 59.375 40.000 0.00 0.00 44.30 3.51
1214 1292 5.506649 GGGTGTTCTTTGAATAAAAGCGTGA 60.507 40.000 0.00 0.00 44.30 4.35
1215 1293 4.679654 GGGTGTTCTTTGAATAAAAGCGTG 59.320 41.667 0.00 0.00 44.30 5.34
1216 1294 4.261867 GGGGTGTTCTTTGAATAAAAGCGT 60.262 41.667 0.00 0.00 44.30 5.07
1217 1295 4.234574 GGGGTGTTCTTTGAATAAAAGCG 58.765 43.478 0.00 0.00 44.30 4.68
1218 1296 4.039852 TGGGGGTGTTCTTTGAATAAAAGC 59.960 41.667 0.00 0.00 44.30 3.51
1219 1297 5.538433 TCTGGGGGTGTTCTTTGAATAAAAG 59.462 40.000 0.00 0.00 45.76 2.27
1220 1298 5.459505 TCTGGGGGTGTTCTTTGAATAAAA 58.540 37.500 0.00 0.00 0.00 1.52
1221 1299 5.068215 TCTGGGGGTGTTCTTTGAATAAA 57.932 39.130 0.00 0.00 0.00 1.40
1222 1300 4.733077 TCTGGGGGTGTTCTTTGAATAA 57.267 40.909 0.00 0.00 0.00 1.40
1223 1301 4.733077 TTCTGGGGGTGTTCTTTGAATA 57.267 40.909 0.00 0.00 0.00 1.75
1224 1302 3.611025 TTCTGGGGGTGTTCTTTGAAT 57.389 42.857 0.00 0.00 0.00 2.57
1225 1303 3.390175 TTTCTGGGGGTGTTCTTTGAA 57.610 42.857 0.00 0.00 0.00 2.69
1226 1304 3.611025 ATTTCTGGGGGTGTTCTTTGA 57.389 42.857 0.00 0.00 0.00 2.69
1227 1305 4.379652 CAAATTTCTGGGGGTGTTCTTTG 58.620 43.478 0.00 0.00 0.00 2.77
1228 1306 3.390967 CCAAATTTCTGGGGGTGTTCTTT 59.609 43.478 0.00 0.00 32.32 2.52
1229 1307 2.972021 CCAAATTTCTGGGGGTGTTCTT 59.028 45.455 0.00 0.00 32.32 2.52
1230 1308 2.090775 ACCAAATTTCTGGGGGTGTTCT 60.091 45.455 1.33 0.00 41.16 3.01
1231 1309 2.325484 ACCAAATTTCTGGGGGTGTTC 58.675 47.619 1.33 0.00 41.16 3.18
1232 1310 2.487746 ACCAAATTTCTGGGGGTGTT 57.512 45.000 1.33 0.00 41.16 3.32
1233 1311 3.837731 CAATACCAAATTTCTGGGGGTGT 59.162 43.478 7.27 0.00 41.16 4.16
1234 1312 3.369366 GCAATACCAAATTTCTGGGGGTG 60.369 47.826 7.27 0.81 41.16 4.61
1235 1313 2.837591 GCAATACCAAATTTCTGGGGGT 59.162 45.455 1.33 2.21 41.16 4.95
1236 1314 2.836981 TGCAATACCAAATTTCTGGGGG 59.163 45.455 1.33 0.00 41.16 5.40
1237 1315 4.550076 TTGCAATACCAAATTTCTGGGG 57.450 40.909 0.00 0.00 41.16 4.96
1238 1316 6.171921 TGATTTGCAATACCAAATTTCTGGG 58.828 36.000 0.00 0.00 43.41 4.45
1239 1317 6.314400 CCTGATTTGCAATACCAAATTTCTGG 59.686 38.462 0.00 0.00 43.41 3.86
1240 1318 6.875195 ACCTGATTTGCAATACCAAATTTCTG 59.125 34.615 0.00 0.00 43.41 3.02
1241 1319 7.008021 ACCTGATTTGCAATACCAAATTTCT 57.992 32.000 0.00 0.00 43.41 2.52
1242 1320 6.313658 GGACCTGATTTGCAATACCAAATTTC 59.686 38.462 0.00 0.00 43.41 2.17
1243 1321 6.172630 GGACCTGATTTGCAATACCAAATTT 58.827 36.000 0.00 0.00 43.41 1.82
1244 1322 5.248020 TGGACCTGATTTGCAATACCAAATT 59.752 36.000 0.00 0.00 43.41 1.82
1245 1323 4.776837 TGGACCTGATTTGCAATACCAAAT 59.223 37.500 0.00 0.22 45.37 2.32
1246 1324 4.155709 TGGACCTGATTTGCAATACCAAA 58.844 39.130 0.00 0.00 38.87 3.28
1247 1325 3.763360 CTGGACCTGATTTGCAATACCAA 59.237 43.478 0.00 0.00 0.00 3.67
1248 1326 3.355378 CTGGACCTGATTTGCAATACCA 58.645 45.455 0.00 2.19 0.00 3.25
1249 1327 2.099756 GCTGGACCTGATTTGCAATACC 59.900 50.000 0.00 0.00 0.00 2.73
1250 1328 2.223340 CGCTGGACCTGATTTGCAATAC 60.223 50.000 0.00 0.00 0.00 1.89
1251 1329 2.016318 CGCTGGACCTGATTTGCAATA 58.984 47.619 0.00 0.00 0.00 1.90
1252 1330 0.813184 CGCTGGACCTGATTTGCAAT 59.187 50.000 0.00 0.00 0.00 3.56
1253 1331 1.865788 GCGCTGGACCTGATTTGCAA 61.866 55.000 0.00 0.00 0.00 4.08
1254 1332 2.334946 GCGCTGGACCTGATTTGCA 61.335 57.895 0.00 0.00 0.00 4.08
1255 1333 1.660560 ATGCGCTGGACCTGATTTGC 61.661 55.000 9.73 1.06 0.00 3.68
1256 1334 0.379669 GATGCGCTGGACCTGATTTG 59.620 55.000 9.73 0.00 0.00 2.32
1257 1335 0.254178 AGATGCGCTGGACCTGATTT 59.746 50.000 9.73 0.00 0.00 2.17
1258 1336 0.463295 CAGATGCGCTGGACCTGATT 60.463 55.000 9.73 0.00 41.07 2.57
1259 1337 1.145598 CAGATGCGCTGGACCTGAT 59.854 57.895 9.73 0.00 41.07 2.90
1260 1338 2.580815 CAGATGCGCTGGACCTGA 59.419 61.111 9.73 0.00 41.07 3.86
1268 1346 1.613925 ACGGTCATATACAGATGCGCT 59.386 47.619 9.73 0.00 0.00 5.92
1269 1347 2.065993 ACGGTCATATACAGATGCGC 57.934 50.000 0.00 0.00 0.00 6.09
1270 1348 2.731451 CCAACGGTCATATACAGATGCG 59.269 50.000 0.00 0.00 0.00 4.73
1271 1349 3.990092 TCCAACGGTCATATACAGATGC 58.010 45.455 0.00 0.00 0.00 3.91
1272 1350 6.705825 TGAAATCCAACGGTCATATACAGATG 59.294 38.462 0.00 0.00 0.00 2.90
1273 1351 6.826668 TGAAATCCAACGGTCATATACAGAT 58.173 36.000 0.00 0.00 0.00 2.90
1274 1352 6.097696 TCTGAAATCCAACGGTCATATACAGA 59.902 38.462 0.00 0.00 0.00 3.41
1275 1353 6.280643 TCTGAAATCCAACGGTCATATACAG 58.719 40.000 0.00 0.00 0.00 2.74
1276 1354 6.228616 TCTGAAATCCAACGGTCATATACA 57.771 37.500 0.00 0.00 0.00 2.29
1277 1355 6.369065 GGATCTGAAATCCAACGGTCATATAC 59.631 42.308 0.00 0.00 38.09 1.47
1278 1356 6.042666 TGGATCTGAAATCCAACGGTCATATA 59.957 38.462 4.30 0.00 44.54 0.86
1279 1357 5.163205 TGGATCTGAAATCCAACGGTCATAT 60.163 40.000 4.30 0.00 44.54 1.78
1280 1358 4.163268 TGGATCTGAAATCCAACGGTCATA 59.837 41.667 4.30 0.00 44.54 2.15
1281 1359 3.054434 TGGATCTGAAATCCAACGGTCAT 60.054 43.478 4.30 0.00 44.54 3.06
1282 1360 2.304470 TGGATCTGAAATCCAACGGTCA 59.696 45.455 4.30 0.00 44.54 4.02
1283 1361 2.985896 TGGATCTGAAATCCAACGGTC 58.014 47.619 4.30 0.00 44.54 4.79
1289 1367 2.669781 GGCCATTGGATCTGAAATCCA 58.330 47.619 6.95 2.63 45.71 3.41
1290 1368 1.610522 CGGCCATTGGATCTGAAATCC 59.389 52.381 6.95 0.00 38.66 3.01
1291 1369 2.551459 CTCGGCCATTGGATCTGAAATC 59.449 50.000 6.95 0.00 0.00 2.17
1292 1370 2.173356 TCTCGGCCATTGGATCTGAAAT 59.827 45.455 6.95 0.00 0.00 2.17
1293 1371 1.559219 TCTCGGCCATTGGATCTGAAA 59.441 47.619 6.95 0.00 0.00 2.69
1294 1372 1.203237 TCTCGGCCATTGGATCTGAA 58.797 50.000 6.95 0.00 0.00 3.02
1295 1373 1.139654 CTTCTCGGCCATTGGATCTGA 59.860 52.381 6.95 0.00 0.00 3.27
1296 1374 1.590932 CTTCTCGGCCATTGGATCTG 58.409 55.000 6.95 0.00 0.00 2.90
1297 1375 0.179034 GCTTCTCGGCCATTGGATCT 60.179 55.000 6.95 0.00 0.00 2.75
1298 1376 0.179034 AGCTTCTCGGCCATTGGATC 60.179 55.000 6.95 0.00 0.00 3.36
1299 1377 0.179034 GAGCTTCTCGGCCATTGGAT 60.179 55.000 6.95 0.00 0.00 3.41
1300 1378 1.221840 GAGCTTCTCGGCCATTGGA 59.778 57.895 6.95 0.00 0.00 3.53
1301 1379 0.393537 AAGAGCTTCTCGGCCATTGG 60.394 55.000 2.24 0.00 35.36 3.16
1302 1380 0.731417 CAAGAGCTTCTCGGCCATTG 59.269 55.000 2.24 0.00 35.36 2.82
1303 1381 0.393537 CCAAGAGCTTCTCGGCCATT 60.394 55.000 2.24 0.00 35.36 3.16
1304 1382 1.222936 CCAAGAGCTTCTCGGCCAT 59.777 57.895 2.24 0.00 35.36 4.40
1305 1383 1.892819 CTCCAAGAGCTTCTCGGCCA 61.893 60.000 2.24 0.00 35.36 5.36
1306 1384 1.153469 CTCCAAGAGCTTCTCGGCC 60.153 63.158 0.00 0.00 35.36 6.13
1307 1385 4.511636 CTCCAAGAGCTTCTCGGC 57.488 61.111 0.00 0.00 35.36 5.54
1313 1391 8.703522 CCTAAGTTTAGGTGCTCCAAGAGCTT 62.704 46.154 16.87 8.15 46.45 3.74
1314 1392 7.318278 CCTAAGTTTAGGTGCTCCAAGAGCT 62.318 48.000 16.87 0.00 46.45 4.09
1315 1393 5.158618 CCTAAGTTTAGGTGCTCCAAGAGC 61.159 50.000 9.65 9.65 46.47 4.09
1316 1394 4.508662 CCTAAGTTTAGGTGCTCCAAGAG 58.491 47.826 7.70 0.00 44.26 2.85
1317 1395 4.553330 CCTAAGTTTAGGTGCTCCAAGA 57.447 45.455 7.70 0.00 44.26 3.02
1328 1406 4.043037 CTACGGGAGCACCTAAGTTTAG 57.957 50.000 0.00 0.00 36.97 1.85
1341 1419 3.753294 AAATATCAGGTGCTACGGGAG 57.247 47.619 0.00 0.00 0.00 4.30
1342 1420 3.181458 GGAAAATATCAGGTGCTACGGGA 60.181 47.826 0.00 0.00 0.00 5.14
1343 1421 3.139077 GGAAAATATCAGGTGCTACGGG 58.861 50.000 0.00 0.00 0.00 5.28
1344 1422 3.139077 GGGAAAATATCAGGTGCTACGG 58.861 50.000 0.00 0.00 0.00 4.02
1345 1423 2.800544 CGGGAAAATATCAGGTGCTACG 59.199 50.000 0.00 0.00 0.00 3.51
1346 1424 3.139077 CCGGGAAAATATCAGGTGCTAC 58.861 50.000 0.00 0.00 0.00 3.58
1347 1425 2.105821 CCCGGGAAAATATCAGGTGCTA 59.894 50.000 18.48 0.00 0.00 3.49
1348 1426 1.133792 CCCGGGAAAATATCAGGTGCT 60.134 52.381 18.48 0.00 0.00 4.40
1349 1427 1.318576 CCCGGGAAAATATCAGGTGC 58.681 55.000 18.48 0.00 0.00 5.01
1350 1428 1.478654 CCCCCGGGAAAATATCAGGTG 60.479 57.143 26.32 0.00 37.50 4.00
1351 1429 0.850784 CCCCCGGGAAAATATCAGGT 59.149 55.000 26.32 0.00 37.50 4.00
1352 1430 0.539669 GCCCCCGGGAAAATATCAGG 60.540 60.000 26.32 12.65 37.50 3.86
1353 1431 0.539669 GGCCCCCGGGAAAATATCAG 60.540 60.000 26.32 0.23 37.50 2.90
1354 1432 0.996762 AGGCCCCCGGGAAAATATCA 60.997 55.000 26.32 0.00 37.50 2.15
1355 1433 1.069775 TAGGCCCCCGGGAAAATATC 58.930 55.000 26.32 3.86 37.50 1.63
1356 1434 1.357761 CATAGGCCCCCGGGAAAATAT 59.642 52.381 26.32 12.14 37.50 1.28
1357 1435 0.774908 CATAGGCCCCCGGGAAAATA 59.225 55.000 26.32 10.12 37.50 1.40
1358 1436 1.541672 CATAGGCCCCCGGGAAAAT 59.458 57.895 26.32 7.87 37.50 1.82
1359 1437 3.011885 CATAGGCCCCCGGGAAAA 58.988 61.111 26.32 2.22 37.50 2.29
1360 1438 3.816090 GCATAGGCCCCCGGGAAA 61.816 66.667 26.32 1.78 37.50 3.13
1395 1473 3.827008 TGTAGATGGATGTCTTGAGGC 57.173 47.619 0.00 0.00 0.00 4.70
1500 1578 2.647297 GCCCAACAGCTGCTGAAC 59.353 61.111 34.28 14.86 35.18 3.18
1515 1593 2.225091 TGTTCATGGGATATGGATGGCC 60.225 50.000 0.00 0.00 0.00 5.36
1581 1680 2.357034 GCCTCGCGTGGTTCTTCA 60.357 61.111 26.41 0.00 0.00 3.02
1650 1773 3.072468 CCGGTGGTTCTAGGCCGA 61.072 66.667 0.00 0.00 46.33 5.54
1867 1991 2.099921 CAGTAGGATCGTCCAGTTCAGG 59.900 54.545 6.78 0.00 39.61 3.86
1933 2061 1.226974 CATACACAGGCGTCTCCCG 60.227 63.158 0.00 0.00 40.40 5.14
2010 2138 4.933400 TCATGGCGATGATCAGAACATATG 59.067 41.667 7.38 0.00 33.40 1.78
2111 2296 7.757242 AGACTAGGAATCTAAAAACAGGGAT 57.243 36.000 0.00 0.00 0.00 3.85
2140 2358 5.473504 GGATGCAGGTTAATCCGATTACATT 59.526 40.000 0.00 0.00 41.99 2.71
2218 2444 6.367374 TGGGTTAAGATACAGACAATCACA 57.633 37.500 0.00 0.00 0.00 3.58
2219 2445 7.552687 TCATTGGGTTAAGATACAGACAATCAC 59.447 37.037 0.00 0.00 0.00 3.06
2220 2446 7.629157 TCATTGGGTTAAGATACAGACAATCA 58.371 34.615 0.00 0.00 0.00 2.57
2221 2447 8.506168 TTCATTGGGTTAAGATACAGACAATC 57.494 34.615 0.00 0.00 0.00 2.67
2263 2489 3.326588 AGTGCACATAGGTTCAGGTAACA 59.673 43.478 21.04 0.00 40.08 2.41
2267 2494 3.073062 AGAAAGTGCACATAGGTTCAGGT 59.927 43.478 21.04 0.00 0.00 4.00
2273 2500 5.658634 TGAGAGATAGAAAGTGCACATAGGT 59.341 40.000 21.04 1.66 0.00 3.08
2295 2522 5.048224 CCGTTCTGAGTTAAGTTCCTACTGA 60.048 44.000 0.00 0.00 34.01 3.41
2296 2523 5.162075 CCGTTCTGAGTTAAGTTCCTACTG 58.838 45.833 0.00 0.00 34.01 2.74
2308 2535 0.468226 TGCACTTCCCGTTCTGAGTT 59.532 50.000 0.00 0.00 0.00 3.01
2309 2536 0.687354 ATGCACTTCCCGTTCTGAGT 59.313 50.000 0.00 0.00 0.00 3.41
2310 2537 1.081892 CATGCACTTCCCGTTCTGAG 58.918 55.000 0.00 0.00 0.00 3.35
2311 2538 0.321564 CCATGCACTTCCCGTTCTGA 60.322 55.000 0.00 0.00 0.00 3.27
2312 2539 0.321564 TCCATGCACTTCCCGTTCTG 60.322 55.000 0.00 0.00 0.00 3.02
2313 2540 0.620556 ATCCATGCACTTCCCGTTCT 59.379 50.000 0.00 0.00 0.00 3.01
2317 2544 0.394216 TCCAATCCATGCACTTCCCG 60.394 55.000 0.00 0.00 0.00 5.14
2335 2562 6.583806 CAGTTTCCTGAATACAAATGCAGTTC 59.416 38.462 0.00 0.00 41.50 3.01
2371 2598 5.007385 ACATCCAGTAGGTTTTACTAGCG 57.993 43.478 0.00 0.00 35.89 4.26
2388 2615 6.963083 ATACTTCTGTACCTAGTGACATCC 57.037 41.667 0.00 0.00 0.00 3.51
2417 2652 6.451393 CAGAGCAGTGGTTACTATTAGGATC 58.549 44.000 0.00 0.00 34.74 3.36
2431 3684 1.277273 TCATCAAGACCAGAGCAGTGG 59.723 52.381 2.86 2.86 44.01 4.00
2437 3690 5.738909 AGGTATGTTTCATCAAGACCAGAG 58.261 41.667 0.00 0.00 32.95 3.35
2445 3698 9.076781 TCAAGAATTCAAGGTATGTTTCATCAA 57.923 29.630 8.44 0.00 0.00 2.57
2446 3699 8.514594 GTCAAGAATTCAAGGTATGTTTCATCA 58.485 33.333 8.44 0.00 0.00 3.07
2537 3798 2.202932 GTCCGCATCTGCATCCGT 60.203 61.111 2.72 0.00 42.21 4.69
2540 3801 1.523258 AGCTGTCCGCATCTGCATC 60.523 57.895 2.72 0.00 42.61 3.91
2591 3857 1.410517 CGTCTGATGCTCCATGGTACT 59.589 52.381 12.58 0.00 0.00 2.73
2592 3858 1.137086 ACGTCTGATGCTCCATGGTAC 59.863 52.381 12.58 5.70 0.00 3.34
2597 3863 0.745845 GCCAACGTCTGATGCTCCAT 60.746 55.000 0.00 0.00 0.00 3.41
2610 3876 3.971150 TCCAAACAAAATGTAGCCAACG 58.029 40.909 0.00 0.00 0.00 4.10
2611 3877 5.195001 TCTCCAAACAAAATGTAGCCAAC 57.805 39.130 0.00 0.00 0.00 3.77
2618 3891 5.397360 AGGAATCCTCTCCAAACAAAATGT 58.603 37.500 0.00 0.00 38.02 2.71
2641 3914 3.770040 CCATCCACCCACGCTCGA 61.770 66.667 0.00 0.00 0.00 4.04
2663 3972 1.986575 GAACTCAGCGCCTGCATTCC 61.987 60.000 2.29 0.00 46.23 3.01
2755 4064 4.760047 CCTCCGCTTCCCCGTGTG 62.760 72.222 0.00 0.00 0.00 3.82
2763 4072 4.168291 CTCCTGGCCCTCCGCTTC 62.168 72.222 0.00 0.00 37.74 3.86
2875 4184 3.500558 TCTCGCTCTTGATCACTCTTG 57.499 47.619 0.00 0.00 0.00 3.02
2876 4185 3.698539 TCATCTCGCTCTTGATCACTCTT 59.301 43.478 0.00 0.00 0.00 2.85
2877 4186 3.286353 TCATCTCGCTCTTGATCACTCT 58.714 45.455 0.00 0.00 0.00 3.24
2886 4209 2.289945 GGCCCAATATCATCTCGCTCTT 60.290 50.000 0.00 0.00 0.00 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.