AutoCloner

Multiple sequence alignment - TraesCS6D01G346700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G346700	chr6D	100.000	2738	0	0	1	2738	445836027	445833290	0.000000e+00	5057.0
1	TraesCS6D01G346700	chr6D	88.453	459	48	4	998	1456	445953945	445954398	1.430000e-152	549.0
2	TraesCS6D01G346700	chr6D	80.198	404	56	17	1960	2359	445848473	445848090	5.770000e-72	281.0
3	TraesCS6D01G346700	chr6D	94.253	87	3	2	557	641	445835430	445835344	6.150000e-27	132.0
4	TraesCS6D01G346700	chr6D	94.253	87	3	2	598	684	445835471	445835387	6.150000e-27	132.0
5	TraesCS6D01G346700	chr6B	87.369	1718	111	45	832	2521	672877233	672875594	0.000000e+00	1873.0
6	TraesCS6D01G346700	chr6B	91.176	918	51	12	839	1739	673624248	673625152	0.000000e+00	1219.0
7	TraesCS6D01G346700	chr6B	88.636	968	56	19	1751	2711	673659016	673659936	0.000000e+00	1129.0
8	TraesCS6D01G346700	chr6B	82.176	1094	151	23	848	1927	672805128	672806191	0.000000e+00	900.0
9	TraesCS6D01G346700	chr6B	82.176	1094	151	23	848	1927	673668480	673667417	0.000000e+00	900.0
10	TraesCS6D01G346700	chr6B	89.049	694	46	15	4	684	672878304	672877628	0.000000e+00	833.0
11	TraesCS6D01G346700	chr6B	85.193	466	61	7	968	1429	674572961	674572500	3.190000e-129	472.0
12	TraesCS6D01G346700	chr6B	94.139	273	7	2	560	832	672877709	672877446	9.130000e-110	407.0
13	TraesCS6D01G346700	chr6B	90.283	247	16	2	2493	2738	672869714	672869475	1.580000e-82	316.0
14	TraesCS6D01G346700	chr6B	90.000	160	9	3	664	819	672662308	672662152	1.660000e-47	200.0
15	TraesCS6D01G346700	chr6B	85.556	180	13	7	664	832	673669377	673669200	2.800000e-40	176.0
16	TraesCS6D01G346700	chr6B	88.514	148	11	2	664	807	672661448	672661593	1.010000e-39	174.0
17	TraesCS6D01G346700	chr6B	98.684	76	1	0	557	632	672877671	672877596	4.760000e-28	135.0
18	TraesCS6D01G346700	chr6B	84.848	132	16	4	10	139	672804184	672804313	2.210000e-26	130.0
19	TraesCS6D01G346700	chr6B	93.243	74	3	2	611	684	672877740	672877669	1.040000e-19	108.0
20	TraesCS6D01G346700	chr6B	100.000	33	0	0	557	589	672877630	672877598	8.190000e-06	62.1
21	TraesCS6D01G346700	chr6A	88.579	1147	76	17	839	1945	592531951	592530820	0.000000e+00	1341.0
22	TraesCS6D01G346700	chr6A	84.211	950	127	18	988	1927	592515944	592516880	0.000000e+00	902.0
23	TraesCS6D01G346700	chr6A	91.228	456	29	5	2293	2738	592530229	592529775	6.480000e-171	610.0
24	TraesCS6D01G346700	chr6A	88.426	432	50	0	1011	1442	592571441	592571872	3.120000e-144	521.0
25	TraesCS6D01G346700	chr6A	89.947	189	14	4	1944	2129	592530737	592530551	3.520000e-59	239.0
26	TraesCS6D01G346700	chr6A	83.730	252	35	4	252	499	602635273	602635522	1.640000e-57	233.0
27	TraesCS6D01G346700	chr6A	84.793	217	13	8	2522	2732	576356147	576356349	1.660000e-47	200.0
28	TraesCS6D01G346700	chr6A	84.793	217	13	8	2522	2732	576371174	576371376	1.660000e-47	200.0
29	TraesCS6D01G346700	chr6A	90.260	154	11	1	2522	2671	576164121	576164274	5.980000e-47	198.0
30	TraesCS6D01G346700	chr6A	89.362	141	14	1	2372	2511	576163941	576164081	2.800000e-40	176.0
31	TraesCS6D01G346700	chr6A	89.362	141	14	1	2372	2511	576355967	576356107	2.800000e-40	176.0
32	TraesCS6D01G346700	chr6A	89.362	141	14	1	2372	2511	576370994	576371134	2.800000e-40	176.0
33	TraesCS6D01G346700	chr6A	81.868	182	29	4	31	209	592532805	592532625	1.700000e-32	150.0
34	TraesCS6D01G346700	chr6A	84.722	144	16	5	2378	2520	41601123	41600985	3.680000e-29	139.0
35	TraesCS6D01G346700	chr5D	85.274	292	29	10	237	518	453782753	453783040	3.450000e-74	289.0
36	TraesCS6D01G346700	chr5D	82.174	230	29	3	282	511	448131596	448131813	1.290000e-43	187.0
37	TraesCS6D01G346700	chr5A	83.391	289	30	6	240	523	1904022	1903747	4.530000e-63	252.0
38	TraesCS6D01G346700	chr5A	85.401	137	16	3	2378	2513	560600140	560600273	3.680000e-29	139.0
39	TraesCS6D01G346700	chr7D	84.252	254	35	5	269	518	39960685	39960433	2.720000e-60	243.0
40	TraesCS6D01G346700	chr7D	96.364	55	2	0	2617	2671	564017251	564017197	1.040000e-14	91.6
41	TraesCS6D01G346700	chr7D	93.220	59	2	2	2617	2675	564016008	564015952	4.860000e-13	86.1
42	TraesCS6D01G346700	chrUn	78.662	314	50	12	210	518	112250931	112250630	2.780000e-45	193.0
43	TraesCS6D01G346700	chr7A	85.401	137	16	3	2378	2513	108109185	108109318	3.680000e-29	139.0
44	TraesCS6D01G346700	chr7A	84.466	103	9	2	237	333	651707385	651707284	8.070000e-16	95.3
45	TraesCS6D01G346700	chr4A	88.596	114	13	0	405	518	645915380	645915267	3.680000e-29	139.0
46	TraesCS6D01G346700	chr4A	88.596	114	13	0	405	518	645949662	645949549	3.680000e-29	139.0
47	TraesCS6D01G346700	chr3B	85.401	137	15	4	2378	2513	221134469	221134601	1.320000e-28	137.0
48	TraesCS6D01G346700	chr1D	79.487	156	20	4	340	495	344676798	344676941	1.730000e-17	100.0
49	TraesCS6D01G346700	chr2D	85.714	91	12	1	251	340	647812411	647812501	8.070000e-16	95.3
50	TraesCS6D01G346700	chr2A	84.615	78	12	0	269	346	772665803	772665726	8.130000e-11	78.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G346700	chr6D	445833290	445836027	2737	True	1773.666667	5057	96.168667	1	2738	3	chr6D.!!$R2	2737
1	TraesCS6D01G346700	chr6B	673624248	673625152	904	False	1219.000000	1219	91.176000	839	1739	1	chr6B.!!$F2	900
2	TraesCS6D01G346700	chr6B	673659016	673659936	920	False	1129.000000	1129	88.636000	1751	2711	1	chr6B.!!$F3	960
3	TraesCS6D01G346700	chr6B	672875594	672878304	2710	True	569.683333	1873	93.747333	4	2521	6	chr6B.!!$R4	2517
4	TraesCS6D01G346700	chr6B	673667417	673669377	1960	True	538.000000	900	83.866000	664	1927	2	chr6B.!!$R5	1263
5	TraesCS6D01G346700	chr6B	672804184	672806191	2007	False	515.000000	900	83.512000	10	1927	2	chr6B.!!$F4	1917
6	TraesCS6D01G346700	chr6A	592515944	592516880	936	False	902.000000	902	84.211000	988	1927	1	chr6A.!!$F1	939
7	TraesCS6D01G346700	chr6A	592529775	592532805	3030	True	585.000000	1341	87.905500	31	2738	4	chr6A.!!$R2	2707

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
243	249	0.323087	AATTCCCGGTTGCCTACACC	60.323	55.0	0.0	0.0	0.0	4.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2039	3345	0.403271	ATGCACCTGAGCCAACTCTT	59.597	50.0	0.0	0.0	43.85	2.85	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	42	1.306141	TGGACGCCTCCAGGATCTT	60.306	57.895	0.00	0.00	42.15	2.40
48	49	1.683319	GCCTCCAGGATCTTTCCAACC	60.683	57.143	0.00	0.00	45.30	3.77
107	109	1.737838	CTGAGCGGCAACATTTCCTA	58.262	50.000	1.45	0.00	0.00	2.94
114	116	2.940410	CGGCAACATTTCCTATACGGTT	59.060	45.455	0.00	0.00	0.00	4.44
158	162	6.808212	CAGTGTTTTTCTCAAGTGTTCAACAT	59.192	34.615	0.00	0.00	0.00	2.71
172	176	6.431234	AGTGTTCAACATTCCAAGATAGTTCC	59.569	38.462	0.00	0.00	0.00	3.62
175	179	7.174946	TGTTCAACATTCCAAGATAGTTCCTTC	59.825	37.037	0.00	0.00	0.00	3.46
178	182	3.906720	TTCCAAGATAGTTCCTTCCCG	57.093	47.619	0.00	0.00	0.00	5.14
185	189	5.437191	AGATAGTTCCTTCCCGTCAATTT	57.563	39.130	0.00	0.00	0.00	1.82
193	197	2.107950	TCCCGTCAATTTCGCTTCAT	57.892	45.000	0.00	0.00	0.00	2.57
196	200	2.095263	CCCGTCAATTTCGCTTCATTGT	60.095	45.455	0.00	0.00	32.96	2.71
198	202	3.364864	CCGTCAATTTCGCTTCATTGTCA	60.365	43.478	0.00	0.00	32.96	3.58
233	237	2.626266	GAGTGGTTTTTCAATTCCCGGT	59.374	45.455	0.00	0.00	0.00	5.28
243	249	0.323087	AATTCCCGGTTGCCTACACC	60.323	55.000	0.00	0.00	0.00	4.16
244	250	2.206182	ATTCCCGGTTGCCTACACCC	62.206	60.000	0.00	0.00	0.00	4.61
264	270	6.015434	ACACCCTCAAATGAACAGTAAATTCC	60.015	38.462	0.00	0.00	0.00	3.01
290	300	6.389622	AAAAAGAAACTGAAACTTTGCGAC	57.610	33.333	0.00	0.00	34.70	5.19
293	303	4.848757	AGAAACTGAAACTTTGCGACATC	58.151	39.130	0.00	0.00	0.00	3.06
300	310	6.803320	ACTGAAACTTTGCGACATCAAATATG	59.197	34.615	0.00	0.00	35.64	1.78
301	311	6.907741	TGAAACTTTGCGACATCAAATATGA	58.092	32.000	0.00	0.00	40.57	2.15
360	370	4.810191	AAAACATTCGAGGAGCTCTACT	57.190	40.909	14.64	2.45	0.00	2.57
373	383	7.434013	CGAGGAGCTCTACTAAAGAAAAAGATC	59.566	40.741	14.64	0.00	32.46	2.75
388	398	5.686159	AAAAGATCTCAGTGCTCAAAGTG	57.314	39.130	0.00	0.00	0.00	3.16
417	427	7.491682	AGCACTTACAATCACTGATTTTTGTT	58.508	30.769	1.17	0.00	34.39	2.83
434	444	7.867305	TTTTTGTTTCTCATGTGTACACCTA	57.133	32.000	22.91	6.00	0.00	3.08
534	544	2.254546	TTTCTGTTCATGCGGAGTGT	57.745	45.000	0.00	0.00	0.00	3.55
559	569	1.279271	ACACCCAAGAGCTATCACACC	59.721	52.381	0.00	0.00	0.00	4.16
589	647	1.812235	TCATGTGTGGATGTCTGCAC	58.188	50.000	0.00	0.00	43.48	4.57
654	712	1.677217	GCGGCACCTTTCTCTTCATCT	60.677	52.381	0.00	0.00	0.00	2.90
782	866	7.210873	GGTGTCCTAACCTCTATAATCACTTG	58.789	42.308	0.00	0.00	37.24	3.16
1012	2177	1.257750	CCTGACGATGGGAGTGGTGA	61.258	60.000	0.00	0.00	0.00	4.02
1243	2416	1.559965	GGGAGGCCCCGTTCTAAAGT	61.560	60.000	0.00	0.00	44.02	2.66
1248	2421	1.359459	GCCCCGTTCTAAAGTCGCTG	61.359	60.000	0.00	0.00	0.00	5.18
1293	2466	1.202582	TCCTACAAGAAGAGCACGCTC	59.797	52.381	11.14	11.14	43.03	5.03
1558	2746	4.585955	TTTAATTTGCAACGCAGGGTTA	57.414	36.364	0.00	0.00	40.61	2.85
1565	2753	1.002502	AACGCAGGGTTAAGGAGGC	60.003	57.895	0.00	0.00	37.00	4.70
1786	2985	3.100671	ACAGGAGTAGACTGATCCCAAC	58.899	50.000	0.00	0.00	39.24	3.77
1827	3027	3.321682	AGTGCTTGCTTTTCCATTTGCTA	59.678	39.130	0.00	0.00	0.00	3.49
1829	3029	2.663119	GCTTGCTTTTCCATTTGCTACG	59.337	45.455	0.00	0.00	0.00	3.51
1831	3031	3.552604	TGCTTTTCCATTTGCTACGAC	57.447	42.857	0.00	0.00	0.00	4.34
1847	3047	1.999735	ACGACAGTGAATAATGCACCG	59.000	47.619	0.00	0.00	36.95	4.94
1976	3280	4.715527	ACTAAATTCGGCGAGTCTACTT	57.284	40.909	10.46	0.68	0.00	2.24
2039	3345	7.492994	GGTTAACATTGGCAAGAAAAGTAAACA	59.507	33.333	5.96	0.00	0.00	2.83
2052	3358	5.757850	AAAGTAAACAAGAGTTGGCTCAG	57.242	39.130	0.00	0.00	44.00	3.35
2089	3400	5.127682	CCAACTATAGGGCTGCAAGAAAAAT	59.872	40.000	4.43	0.00	34.07	1.82
2090	3401	6.268566	CAACTATAGGGCTGCAAGAAAAATC	58.731	40.000	4.43	0.00	34.07	2.17
2108	3420	4.821589	CGAGGCTTGGGAGTCGCC	62.822	72.222	4.54	1.50	44.09	5.54
2133	3445	3.423645	GGATTGACTCGTCTTTTTGCTCG	60.424	47.826	0.00	0.00	0.00	5.03
2138	3640	2.540101	ACTCGTCTTTTTGCTCGACTTG	59.460	45.455	0.00	0.00	0.00	3.16
2174	3676	6.325028	AGCTGAATAGGAGCACTTTATGTAGA	59.675	38.462	0.00	0.00	39.05	2.59
2233	3743	3.001736	GCTCGCTTGATTTTAGCTCGATT	59.998	43.478	0.00	0.00	36.49	3.34
2384	3894	1.073284	GCCCCTCACCTACAAAACAGA	59.927	52.381	0.00	0.00	0.00	3.41
2405	3915	4.402155	AGAAGCAGGTGTTCAATTCAAACA	59.598	37.500	0.00	0.00	34.37	2.83
2406	3916	4.942761	AGCAGGTGTTCAATTCAAACAT	57.057	36.364	6.28	0.00	38.75	2.71
2474	3993	4.574013	CCTTGGTAAGCTGAGATGTCAATC	59.426	45.833	0.00	0.00	30.14	2.67
2694	4216	2.047061	AGAGTACAACAAGCACCAGGA	58.953	47.619	0.00	0.00	0.00	3.86

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
1	2	1.716581	CTCTTTCTGTCGTCGTCAAGC	59.283	52.381	0.00	0.00	0.00	4.01
2	3	3.269486	TCTCTTTCTGTCGTCGTCAAG	57.731	47.619	0.00	0.00	0.00	3.02
3	4	3.565516	CATCTCTTTCTGTCGTCGTCAA	58.434	45.455	0.00	0.00	0.00	3.18
4	5	2.095212	CCATCTCTTTCTGTCGTCGTCA	60.095	50.000	0.00	0.00	0.00	4.35
5	6	2.161808	TCCATCTCTTTCTGTCGTCGTC	59.838	50.000	0.00	0.00	0.00	4.20
6	7	2.095161	GTCCATCTCTTTCTGTCGTCGT	60.095	50.000	0.00	0.00	0.00	4.34
7	8	2.520979	GTCCATCTCTTTCTGTCGTCG	58.479	52.381	0.00	0.00	0.00	5.12
8	9	2.520979	CGTCCATCTCTTTCTGTCGTC	58.479	52.381	0.00	0.00	0.00	4.20
14	15	0.827368	GGAGGCGTCCATCTCTTTCT	59.173	55.000	20.47	0.00	43.31	2.52
15	16	3.371087	GGAGGCGTCCATCTCTTTC	57.629	57.895	20.47	0.00	43.31	2.62
38	39	1.705186	CTTCCTCTGGGGTTGGAAAGA	59.295	52.381	0.00	0.00	39.10	2.52
41	42	1.635487	CATCTTCCTCTGGGGTTGGAA	59.365	52.381	0.00	0.00	38.10	3.53
48	49	2.432510	GGTAGTGTCATCTTCCTCTGGG	59.567	54.545	0.00	0.00	0.00	4.45
107	109	0.541392	TCAGCAGCCATGAACCGTAT	59.459	50.000	0.00	0.00	0.00	3.06
135	139	7.201435	GGAATGTTGAACACTTGAGAAAAACAC	60.201	37.037	0.00	0.00	0.00	3.32
158	162	3.178865	ACGGGAAGGAACTATCTTGGAA	58.821	45.455	0.00	0.00	38.49	3.53
172	176	1.804151	TGAAGCGAAATTGACGGGAAG	59.196	47.619	7.27	0.00	0.00	3.46
175	179	2.095263	ACAATGAAGCGAAATTGACGGG	60.095	45.455	13.10	0.00	37.26	5.28
178	182	3.599514	CGTGACAATGAAGCGAAATTGAC	59.400	43.478	13.10	8.72	37.26	3.18
185	189	1.859383	TGAACGTGACAATGAAGCGA	58.141	45.000	0.00	0.00	0.00	4.93
193	197	3.006859	ACTCTCCATGATGAACGTGACAA	59.993	43.478	0.00	0.00	37.69	3.18
196	200	2.094026	CCACTCTCCATGATGAACGTGA	60.094	50.000	0.00	0.00	37.69	4.35
198	202	1.902508	ACCACTCTCCATGATGAACGT	59.097	47.619	0.00	0.00	0.00	3.99
233	237	3.153919	GTTCATTTGAGGGTGTAGGCAA	58.846	45.455	0.00	0.00	0.00	4.52
243	249	8.885494	TTTTGGAATTTACTGTTCATTTGAGG	57.115	30.769	0.00	0.00	0.00	3.86
272	278	4.597079	TGATGTCGCAAAGTTTCAGTTTC	58.403	39.130	0.00	0.00	0.00	2.78
275	285	4.630894	TTTGATGTCGCAAAGTTTCAGT	57.369	36.364	0.00	0.00	33.16	3.41
300	310	8.400947	TCTTGCAAGCATCTATAAAGTTTGATC	58.599	33.333	21.99	0.00	0.00	2.92
301	311	8.284945	TCTTGCAAGCATCTATAAAGTTTGAT	57.715	30.769	21.99	0.00	0.00	2.57
315	325	2.500098	AGGCATGAAATCTTGCAAGCAT	59.500	40.909	21.99	15.45	45.46	3.79
343	353	5.759506	TCTTTAGTAGAGCTCCTCGAATG	57.240	43.478	10.93	8.68	35.36	2.67
348	358	8.474831	AGATCTTTTTCTTTAGTAGAGCTCCTC	58.525	37.037	10.93	3.71	33.51	3.71
356	366	8.770438	AGCACTGAGATCTTTTTCTTTAGTAG	57.230	34.615	0.00	0.00	0.00	2.57
360	370	8.450578	TTTGAGCACTGAGATCTTTTTCTTTA	57.549	30.769	0.00	0.00	32.67	1.85
388	398	5.869753	ATCAGTGATTGTAAGTGCTCAAC	57.130	39.130	0.00	0.00	0.00	3.18
399	409	8.199449	ACATGAGAAACAAAAATCAGTGATTGT	58.801	29.630	18.94	11.05	37.59	2.71
401	411	8.199449	ACACATGAGAAACAAAAATCAGTGATT	58.801	29.630	12.75	12.75	33.25	2.57
417	427	7.116736	TGTAGAGATAGGTGTACACATGAGAA	58.883	38.462	26.51	5.81	0.00	2.87
456	466	8.649973	ACGTTTTAGGTGATTGCAAATTTTAA	57.350	26.923	1.71	0.00	0.00	1.52
457	467	8.649973	AACGTTTTAGGTGATTGCAAATTTTA	57.350	26.923	1.71	0.00	0.00	1.52
460	470	6.758886	TCAAACGTTTTAGGTGATTGCAAATT	59.241	30.769	11.66	0.00	0.00	1.82
471	481	7.209471	TCAAATATGCTCAAACGTTTTAGGT	57.791	32.000	20.59	6.23	0.00	3.08
534	544	2.023404	TGATAGCTCTTGGGTGTCCCTA	60.023	50.000	6.38	0.00	45.70	3.53
545	555	5.247110	TGAAGAGAAAGGTGTGATAGCTCTT	59.753	40.000	0.00	0.00	42.13	2.85
546	556	4.774726	TGAAGAGAAAGGTGTGATAGCTCT	59.225	41.667	0.00	0.00	35.72	4.09
559	569	5.646793	ACATCCACACATGATGAAGAGAAAG	59.353	40.000	0.00	0.00	41.72	2.62
782	866	7.277174	AGACACAAATAATAGGGCTTAATGC	57.723	36.000	0.00	0.00	41.94	3.56
867	2007	1.377725	GGCCCCTGATGTCACACTG	60.378	63.158	0.00	0.00	0.00	3.66
930	2084	2.165234	GCTCAGCCTTGGGAAAGAAATC	59.835	50.000	0.00	0.00	0.00	2.17
1050	2215	4.758251	CCGGACATCTGCGCCACA	62.758	66.667	4.18	0.00	0.00	4.17
1207	2380	1.812922	CCATCTCCGAGCACAGCAC	60.813	63.158	0.00	0.00	0.00	4.40
1486	2672	9.840427	AATTAAATCAGTTTTGTAGAATGTCGG	57.160	29.630	0.00	0.00	0.00	4.79
1525	2713	6.842282	CGTTGCAAATTAAATTAGCATGATGC	59.158	34.615	9.89	9.89	45.46	3.91
1558	2746	2.420687	GGTCATTCTCATTCGCCTCCTT	60.421	50.000	0.00	0.00	0.00	3.36
1565	2753	3.534554	TGTGATGGGTCATTCTCATTCG	58.465	45.455	0.00	0.00	37.38	3.34
1786	2985	4.142730	GCACTGAGAATTCACTTTAGCCTG	60.143	45.833	8.44	0.00	0.00	4.85
1827	3027	1.999735	CGGTGCATTATTCACTGTCGT	59.000	47.619	0.00	0.00	36.38	4.34
1831	3031	3.002791	ACAGACGGTGCATTATTCACTG	58.997	45.455	2.42	2.42	44.25	3.66
1976	3280	5.911752	TCAAAATCTGCCAAACTTTTAGCA	58.088	33.333	0.00	0.00	33.89	3.49
2039	3345	0.403271	ATGCACCTGAGCCAACTCTT	59.597	50.000	0.00	0.00	43.85	2.85
2072	3378	2.091541	CGGATTTTTCTTGCAGCCCTA	58.908	47.619	0.00	0.00	0.00	3.53
2073	3379	0.890683	CGGATTTTTCTTGCAGCCCT	59.109	50.000	0.00	0.00	0.00	5.19
2089	3400	3.068691	CGACTCCCAAGCCTCGGA	61.069	66.667	0.00	0.00	0.00	4.55
2090	3401	4.821589	GCGACTCCCAAGCCTCGG	62.822	72.222	0.00	0.00	0.00	4.63
2108	3420	3.365364	GCAAAAAGACGAGTCAATCCCAG	60.365	47.826	5.99	0.00	0.00	4.45
2133	3445	9.780413	CCTATTCAGCTTATTTCTTTTCAAGTC	57.220	33.333	0.00	0.00	0.00	3.01
2138	3640	7.912773	GTGCTCCTATTCAGCTTATTTCTTTTC	59.087	37.037	0.00	0.00	37.79	2.29
2148	3650	5.749462	ACATAAAGTGCTCCTATTCAGCTT	58.251	37.500	0.00	0.00	37.79	3.74
2174	3676	8.148999	TCAAGATCATCTCATTTCTCGATTGAT	58.851	33.333	0.00	0.00	0.00	2.57
2384	3894	4.734398	TGTTTGAATTGAACACCTGCTT	57.266	36.364	0.99	0.00	32.44	3.91
2474	3993	2.095567	GTGTGCTGTAGTTCTTGCATGG	60.096	50.000	0.00	0.00	37.76	3.66
2576	4097	4.033358	CCACAATCTCAAGTAACTGATCGC	59.967	45.833	0.00	0.00	0.00	4.58
2647	4168	5.086104	TCTACATGGGTTTCAAGCTAGAC	57.914	43.478	0.00	0.00	0.00	2.59

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.