Multiple sequence alignment - TraesCS6D01G346100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G346100 chr6D 100.000 3464 0 0 1 3464 445789777 445786314 0.000000e+00 6397
1 TraesCS6D01G346100 chr6D 84.148 2290 292 34 795 3049 445978760 445981013 0.000000e+00 2152
2 TraesCS6D01G346100 chr6D 85.288 2080 239 28 795 2855 445964283 445966314 0.000000e+00 2084
3 TraesCS6D01G346100 chr6D 89.330 1612 163 6 813 2420 411470972 411469366 0.000000e+00 2015
4 TraesCS6D01G346100 chr6D 86.207 174 17 3 377 550 445978279 445978445 7.640000e-42 182
5 TraesCS6D01G346100 chr6D 79.710 276 33 16 3143 3412 445731271 445731013 9.880000e-41 178
6 TraesCS6D01G346100 chr6D 85.057 174 15 6 377 550 445963784 445963946 2.140000e-37 167
7 TraesCS6D01G346100 chr6D 84.259 108 16 1 409 516 411471412 411471306 1.700000e-18 104
8 TraesCS6D01G346100 chr6B 93.515 1727 104 3 1047 2765 672462674 672460948 0.000000e+00 2562
9 TraesCS6D01G346100 chr6B 88.529 1761 174 11 846 2605 672492599 672490866 0.000000e+00 2108
10 TraesCS6D01G346100 chr6B 91.838 1409 103 8 813 2217 672457701 672456301 0.000000e+00 1954
11 TraesCS6D01G346100 chr6B 88.531 1613 170 10 813 2420 618670272 618668670 0.000000e+00 1940
12 TraesCS6D01G346100 chr6B 87.328 363 27 8 189 551 672493605 672493262 6.970000e-107 398
13 TraesCS6D01G346100 chr6B 87.931 174 14 5 382 550 673875689 673875860 7.580000e-47 198
14 TraesCS6D01G346100 chr6B 89.831 118 11 1 3 119 672493734 672493617 2.150000e-32 150
15 TraesCS6D01G346100 chr6A 87.884 2179 199 29 478 2605 592464819 592462655 0.000000e+00 2501
16 TraesCS6D01G346100 chr6A 88.883 1898 194 9 813 2706 592458964 592457080 0.000000e+00 2320
17 TraesCS6D01G346100 chr6A 84.716 2290 263 35 795 3049 592618143 592620380 0.000000e+00 2209
18 TraesCS6D01G346100 chr6A 88.979 1606 166 8 820 2420 556038476 556036877 0.000000e+00 1975
19 TraesCS6D01G346100 chr6A 84.810 316 37 10 3095 3405 592456708 592456399 1.210000e-79 307
20 TraesCS6D01G346100 chr6A 84.068 295 33 5 2763 3050 592457003 592456716 4.410000e-69 272
21 TraesCS6D01G346100 chr6A 79.027 329 46 14 3097 3406 592602084 592602408 1.630000e-48 204
22 TraesCS6D01G346100 chr6A 79.152 283 39 12 3135 3412 592345260 592344993 9.880000e-41 178
23 TraesCS6D01G346100 chr6A 95.370 108 5 0 162 269 592465247 592465140 4.600000e-39 172
24 TraesCS6D01G346100 chr6A 94.340 106 5 1 302 407 592465143 592465039 9.950000e-36 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G346100 chr6D 445786314 445789777 3463 True 6397.000000 6397 100.000000 1 3464 1 chr6D.!!$R2 3463
1 TraesCS6D01G346100 chr6D 445978279 445981013 2734 False 1167.000000 2152 85.177500 377 3049 2 chr6D.!!$F2 2672
2 TraesCS6D01G346100 chr6D 445963784 445966314 2530 False 1125.500000 2084 85.172500 377 2855 2 chr6D.!!$F1 2478
3 TraesCS6D01G346100 chr6D 411469366 411471412 2046 True 1059.500000 2015 86.794500 409 2420 2 chr6D.!!$R3 2011
4 TraesCS6D01G346100 chr6B 672456301 672462674 6373 True 2258.000000 2562 92.676500 813 2765 2 chr6B.!!$R2 1952
5 TraesCS6D01G346100 chr6B 618668670 618670272 1602 True 1940.000000 1940 88.531000 813 2420 1 chr6B.!!$R1 1607
6 TraesCS6D01G346100 chr6B 672490866 672493734 2868 True 885.333333 2108 88.562667 3 2605 3 chr6B.!!$R3 2602
7 TraesCS6D01G346100 chr6A 592618143 592620380 2237 False 2209.000000 2209 84.716000 795 3049 1 chr6A.!!$F2 2254
8 TraesCS6D01G346100 chr6A 556036877 556038476 1599 True 1975.000000 1975 88.979000 820 2420 1 chr6A.!!$R1 1600
9 TraesCS6D01G346100 chr6A 592456399 592465247 8848 True 955.500000 2501 89.225833 162 3405 6 chr6A.!!$R3 3243

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
505 656 0.178915 TCCGTTCCCTTCCCTTCTCA 60.179 55.0 0.0 0.0 0.00 3.27 F
1515 7626 0.617820 GGCTGGAGTACCTTGGGAGA 60.618 60.0 0.0 0.0 37.04 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2423 13738 0.391661 CCTGTTCATGTCCCTGTCCG 60.392 60.0 0.0 0.0 0.0 4.79 R
3425 14807 0.388659 TGTGTTTGCTTGATGGTGGC 59.611 50.0 0.0 0.0 0.0 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 3.789756 CACATTCCGATCACACGTACTAC 59.210 47.826 0.00 0.00 0.00 2.73
59 60 3.441222 ACATTCCGATCACACGTACTACA 59.559 43.478 0.00 0.00 0.00 2.74
62 63 3.011818 TCCGATCACACGTACTACATGT 58.988 45.455 2.69 2.69 0.00 3.21
70 71 4.031765 CACACGTACTACATGTGATGCTTC 59.968 45.833 9.11 0.00 45.57 3.86
72 73 4.500837 CACGTACTACATGTGATGCTTCTC 59.499 45.833 9.11 0.00 45.57 2.87
92 93 7.819900 GCTTCTCTTTCCTTGTTCATTAGAGTA 59.180 37.037 0.00 0.00 31.82 2.59
97 98 9.096823 TCTTTCCTTGTTCATTAGAGTAGGTTA 57.903 33.333 0.00 0.00 0.00 2.85
143 145 4.853468 AAATTGGGGGAAAACAGTTTGT 57.147 36.364 0.00 0.00 0.00 2.83
144 146 4.415881 AATTGGGGGAAAACAGTTTGTC 57.584 40.909 0.00 0.06 0.00 3.18
145 147 2.838637 TGGGGGAAAACAGTTTGTCT 57.161 45.000 0.00 0.00 0.00 3.41
146 148 3.108847 TGGGGGAAAACAGTTTGTCTT 57.891 42.857 0.00 0.00 0.00 3.01
147 149 3.445987 TGGGGGAAAACAGTTTGTCTTT 58.554 40.909 0.00 0.00 0.00 2.52
148 150 3.841255 TGGGGGAAAACAGTTTGTCTTTT 59.159 39.130 0.00 0.00 0.00 2.27
149 151 4.287326 TGGGGGAAAACAGTTTGTCTTTTT 59.713 37.500 0.00 0.00 0.00 1.94
181 183 6.042781 GGGAGGGGAAAAATAGTTTGTCTTTT 59.957 38.462 0.00 0.00 0.00 2.27
205 207 8.882415 TTAAGAACACGAGATTCAGTTAGTTT 57.118 30.769 0.00 0.00 0.00 2.66
273 275 2.534264 CTTCGTTGCTGCTGCGTACG 62.534 60.000 26.08 26.08 45.04 3.67
274 276 3.103289 CGTTGCTGCTGCGTACGA 61.103 61.111 27.19 3.19 45.88 3.43
275 277 2.772189 GTTGCTGCTGCGTACGAG 59.228 61.111 21.65 14.29 43.34 4.18
276 278 2.022129 GTTGCTGCTGCGTACGAGT 61.022 57.895 21.65 0.00 43.34 4.18
277 279 0.731514 GTTGCTGCTGCGTACGAGTA 60.732 55.000 21.65 11.82 43.34 2.59
280 282 0.376152 GCTGCTGCGTACGAGTACTA 59.624 55.000 21.65 0.00 34.04 1.82
281 283 1.855223 GCTGCTGCGTACGAGTACTAC 60.855 57.143 21.65 0.00 34.04 2.73
282 284 1.664659 CTGCTGCGTACGAGTACTACT 59.335 52.381 21.65 0.00 34.04 2.57
283 285 2.862536 CTGCTGCGTACGAGTACTACTA 59.137 50.000 21.65 0.00 34.04 1.82
284 286 3.261580 TGCTGCGTACGAGTACTACTAA 58.738 45.455 21.65 0.00 34.04 2.24
285 287 3.873361 TGCTGCGTACGAGTACTACTAAT 59.127 43.478 21.65 0.00 34.04 1.73
286 288 4.025396 TGCTGCGTACGAGTACTACTAATC 60.025 45.833 21.65 0.00 34.04 1.75
287 289 4.610231 GCTGCGTACGAGTACTACTAATCC 60.610 50.000 21.65 0.00 34.04 3.01
289 291 5.059161 TGCGTACGAGTACTACTAATCCAT 58.941 41.667 21.65 0.00 34.04 3.41
290 292 5.528690 TGCGTACGAGTACTACTAATCCATT 59.471 40.000 21.65 0.00 34.04 3.16
291 293 6.076557 GCGTACGAGTACTACTAATCCATTC 58.923 44.000 21.65 0.00 34.04 2.67
292 294 6.295110 CGTACGAGTACTACTAATCCATTCG 58.705 44.000 10.44 0.00 34.04 3.34
293 295 6.144563 CGTACGAGTACTACTAATCCATTCGA 59.855 42.308 10.44 0.00 34.04 3.71
294 296 6.542574 ACGAGTACTACTAATCCATTCGAG 57.457 41.667 0.00 0.00 0.00 4.04
295 297 5.049543 ACGAGTACTACTAATCCATTCGAGC 60.050 44.000 0.00 0.00 0.00 5.03
296 298 5.179742 CGAGTACTACTAATCCATTCGAGCT 59.820 44.000 0.00 0.00 0.00 4.09
297 299 6.563222 AGTACTACTAATCCATTCGAGCTC 57.437 41.667 2.73 2.73 0.00 4.09
298 300 4.857509 ACTACTAATCCATTCGAGCTCC 57.142 45.455 8.47 0.00 0.00 4.70
299 301 4.475345 ACTACTAATCCATTCGAGCTCCT 58.525 43.478 8.47 0.00 0.00 3.69
300 302 5.632118 ACTACTAATCCATTCGAGCTCCTA 58.368 41.667 8.47 0.00 0.00 2.94
301 303 4.857509 ACTAATCCATTCGAGCTCCTAC 57.142 45.455 8.47 0.00 0.00 3.18
302 304 4.475345 ACTAATCCATTCGAGCTCCTACT 58.525 43.478 8.47 0.00 0.00 2.57
303 305 3.742433 AATCCATTCGAGCTCCTACTG 57.258 47.619 8.47 1.24 0.00 2.74
304 306 0.747255 TCCATTCGAGCTCCTACTGC 59.253 55.000 8.47 0.00 0.00 4.40
305 307 0.749649 CCATTCGAGCTCCTACTGCT 59.250 55.000 8.47 0.00 44.24 4.24
306 308 1.537776 CCATTCGAGCTCCTACTGCTG 60.538 57.143 8.47 0.00 41.30 4.41
307 309 1.406898 CATTCGAGCTCCTACTGCTGA 59.593 52.381 8.47 0.00 41.30 4.26
505 656 0.178915 TCCGTTCCCTTCCCTTCTCA 60.179 55.000 0.00 0.00 0.00 3.27
559 763 3.449377 TCGATTCTTGCACCATGTACCTA 59.551 43.478 0.00 0.00 0.00 3.08
590 814 1.352687 TGCACTTGGCCCACTATGTAA 59.647 47.619 0.00 0.00 43.89 2.41
591 815 2.025416 TGCACTTGGCCCACTATGTAAT 60.025 45.455 0.00 0.00 43.89 1.89
593 817 4.204012 GCACTTGGCCCACTATGTAATAA 58.796 43.478 0.00 0.00 36.11 1.40
603 898 7.255486 GGCCCACTATGTAATAACTGAAATTCC 60.255 40.741 0.00 0.00 0.00 3.01
672 984 4.819088 GCCTAGAATTTGTCCTTCCAGATC 59.181 45.833 0.00 0.00 0.00 2.75
772 1219 8.158169 TGCTCCAAGATAAGCATGTAATTAAG 57.842 34.615 0.00 0.00 43.30 1.85
773 1220 7.775093 TGCTCCAAGATAAGCATGTAATTAAGT 59.225 33.333 0.00 0.00 43.30 2.24
774 1221 8.072567 GCTCCAAGATAAGCATGTAATTAAGTG 58.927 37.037 0.00 0.00 38.42 3.16
775 1222 9.330063 CTCCAAGATAAGCATGTAATTAAGTGA 57.670 33.333 0.00 0.00 0.00 3.41
776 1223 9.109393 TCCAAGATAAGCATGTAATTAAGTGAC 57.891 33.333 0.00 0.00 0.00 3.67
777 1224 9.113838 CCAAGATAAGCATGTAATTAAGTGACT 57.886 33.333 0.00 0.00 0.00 3.41
778 1225 9.926751 CAAGATAAGCATGTAATTAAGTGACTG 57.073 33.333 0.00 0.00 0.00 3.51
779 1226 9.672673 AAGATAAGCATGTAATTAAGTGACTGT 57.327 29.630 0.00 0.00 0.00 3.55
780 1227 9.672673 AGATAAGCATGTAATTAAGTGACTGTT 57.327 29.630 0.00 0.00 0.00 3.16
781 1228 9.922305 GATAAGCATGTAATTAAGTGACTGTTC 57.078 33.333 0.00 0.00 0.00 3.18
782 1229 6.743575 AGCATGTAATTAAGTGACTGTTCC 57.256 37.500 0.00 0.00 0.00 3.62
783 1230 5.648092 AGCATGTAATTAAGTGACTGTTCCC 59.352 40.000 0.00 0.00 0.00 3.97
784 1231 5.163652 GCATGTAATTAAGTGACTGTTCCCC 60.164 44.000 0.00 0.00 0.00 4.81
785 1232 5.836024 TGTAATTAAGTGACTGTTCCCCT 57.164 39.130 0.00 0.00 0.00 4.79
786 1233 6.938698 TGTAATTAAGTGACTGTTCCCCTA 57.061 37.500 0.00 0.00 0.00 3.53
787 1234 7.319052 TGTAATTAAGTGACTGTTCCCCTAA 57.681 36.000 0.00 0.00 0.00 2.69
788 1235 7.747690 TGTAATTAAGTGACTGTTCCCCTAAA 58.252 34.615 0.00 0.00 0.00 1.85
789 1236 8.219178 TGTAATTAAGTGACTGTTCCCCTAAAA 58.781 33.333 0.00 0.00 0.00 1.52
790 1237 9.070179 GTAATTAAGTGACTGTTCCCCTAAAAA 57.930 33.333 0.00 0.00 0.00 1.94
996 1609 2.676839 CCAAGTTGTGCAGCTGAGATAG 59.323 50.000 20.43 0.00 0.00 2.08
998 1611 2.969990 AGTTGTGCAGCTGAGATAGTG 58.030 47.619 20.43 0.00 0.00 2.74
1174 7285 3.362706 TCTACAGAAGCCTTGGTATCGT 58.637 45.455 0.00 0.00 0.00 3.73
1212 7323 5.123227 CCCAATTTGGCGAAAGTAGAGATA 58.877 41.667 10.10 0.00 35.79 1.98
1221 7332 7.208080 TGGCGAAAGTAGAGATAAACTATTCC 58.792 38.462 0.00 0.00 0.00 3.01
1228 7339 7.011382 AGTAGAGATAAACTATTCCGGATGGT 58.989 38.462 4.15 1.28 36.30 3.55
1229 7340 6.102897 AGAGATAAACTATTCCGGATGGTG 57.897 41.667 4.15 0.00 36.30 4.17
1293 7404 2.091111 TCTATCATCTCACTGCCCCTCA 60.091 50.000 0.00 0.00 0.00 3.86
1306 7417 0.905357 CCCCTCACTGTCCGATCTTT 59.095 55.000 0.00 0.00 0.00 2.52
1390 7501 2.053618 AGTTCGCTCAGGCTGAACT 58.946 52.632 19.29 15.59 46.38 3.01
1425 7536 6.649557 CAGTAACTTCTACTGGGATTTTTCGT 59.350 38.462 4.34 0.00 40.76 3.85
1458 7569 1.168714 GCAGGCATCTTTCGGTTCTT 58.831 50.000 0.00 0.00 0.00 2.52
1475 7586 5.063880 GGTTCTTCACCTTGTTGACTGTAT 58.936 41.667 0.00 0.00 43.29 2.29
1515 7626 0.617820 GGCTGGAGTACCTTGGGAGA 60.618 60.000 0.00 0.00 37.04 3.71
1529 7640 4.043812 CCTTGGGAGATATGGATCATTGGT 59.956 45.833 0.00 0.00 34.17 3.67
1530 7641 5.251468 CCTTGGGAGATATGGATCATTGGTA 59.749 44.000 0.00 0.00 34.17 3.25
1593 7704 1.546029 CTCTTAAAGTTTGGCCCAGGC 59.454 52.381 0.00 0.00 41.06 4.85
2077 13392 1.363744 GCTCGTCCAATCTTGTCCAG 58.636 55.000 0.00 0.00 0.00 3.86
2079 13394 2.611518 CTCGTCCAATCTTGTCCAGTC 58.388 52.381 0.00 0.00 0.00 3.51
2229 13544 4.708177 TCATTATACTGGCTCCTTGCTTC 58.292 43.478 0.00 0.00 42.39 3.86
2423 13738 4.378459 CGGCAGTCTAAAAGGAATGAACAC 60.378 45.833 0.00 0.00 33.79 3.32
2425 13740 4.378459 GCAGTCTAAAAGGAATGAACACGG 60.378 45.833 0.00 0.00 33.79 4.94
2431 13746 0.324943 AGGAATGAACACGGACAGGG 59.675 55.000 0.00 0.00 0.00 4.45
2435 13750 0.984230 ATGAACACGGACAGGGACAT 59.016 50.000 0.00 0.00 0.00 3.06
2469 13784 2.267642 CGGTCGCCCTGAATCCAA 59.732 61.111 0.00 0.00 0.00 3.53
2553 13868 3.889520 AGTAAATTCGGAGGACAGGTC 57.110 47.619 0.00 0.00 0.00 3.85
2572 13887 1.259142 CCACCTGCCATTTCCATGCA 61.259 55.000 0.00 0.00 0.00 3.96
2574 13889 1.208535 CACCTGCCATTTCCATGCAAT 59.791 47.619 0.00 0.00 0.00 3.56
2580 13896 5.163281 TGCCATTTCCATGCAATAAGTTT 57.837 34.783 0.00 0.00 0.00 2.66
2581 13897 5.558818 TGCCATTTCCATGCAATAAGTTTT 58.441 33.333 0.00 0.00 0.00 2.43
2591 13907 7.882271 TCCATGCAATAAGTTTTAATTGGCTTT 59.118 29.630 0.00 0.00 34.37 3.51
2623 13939 3.058224 AGACTTGTTTTGGTAATGCGAGC 60.058 43.478 0.00 0.00 0.00 5.03
2629 13945 2.472695 TTGGTAATGCGAGCTCTGTT 57.527 45.000 12.85 6.27 0.00 3.16
2644 13960 4.774200 AGCTCTGTTTTAGGAATTTGCCAT 59.226 37.500 0.00 0.00 0.00 4.40
2658 13974 6.144402 GGAATTTGCCATAATTCTTGCGTATG 59.856 38.462 12.76 0.00 41.86 2.39
2694 14010 5.736358 GCTTCGATTTGTAATCTCTTTGCAG 59.264 40.000 0.00 0.00 31.22 4.41
2696 14012 6.408858 TCGATTTGTAATCTCTTTGCAGTC 57.591 37.500 0.00 0.00 31.22 3.51
2709 14025 6.381133 TCTCTTTGCAGTCCTCATATCTGTAA 59.619 38.462 0.00 0.00 33.51 2.41
2710 14026 6.946340 TCTTTGCAGTCCTCATATCTGTAAA 58.054 36.000 0.00 0.00 39.81 2.01
2711 14027 7.244166 CTTTGCAGTCCTCATATCTGTAAAG 57.756 40.000 15.83 15.83 46.35 1.85
2712 14028 5.939764 TGCAGTCCTCATATCTGTAAAGT 57.060 39.130 0.00 0.00 0.00 2.66
2713 14029 5.907207 TGCAGTCCTCATATCTGTAAAGTC 58.093 41.667 0.00 0.00 0.00 3.01
2716 14032 7.142680 GCAGTCCTCATATCTGTAAAGTCTAC 58.857 42.308 0.00 0.00 0.00 2.59
2717 14033 7.013846 GCAGTCCTCATATCTGTAAAGTCTACT 59.986 40.741 0.00 0.00 0.00 2.57
2729 14045 7.287005 TCTGTAAAGTCTACTTCCTTTCACTGA 59.713 37.037 0.00 0.00 34.61 3.41
2730 14046 7.208080 TGTAAAGTCTACTTCCTTTCACTGAC 58.792 38.462 0.00 0.00 34.61 3.51
2731 14047 6.487299 AAAGTCTACTTCCTTTCACTGACT 57.513 37.500 0.00 0.00 34.61 3.41
2732 14048 5.461032 AGTCTACTTCCTTTCACTGACTG 57.539 43.478 0.00 0.00 33.09 3.51
2733 14049 3.991121 GTCTACTTCCTTTCACTGACTGC 59.009 47.826 0.00 0.00 0.00 4.40
2734 14050 3.898123 TCTACTTCCTTTCACTGACTGCT 59.102 43.478 0.00 0.00 0.00 4.24
2735 14051 3.118905 ACTTCCTTTCACTGACTGCTC 57.881 47.619 0.00 0.00 0.00 4.26
2736 14052 2.224402 ACTTCCTTTCACTGACTGCTCC 60.224 50.000 0.00 0.00 0.00 4.70
2737 14053 1.423584 TCCTTTCACTGACTGCTCCA 58.576 50.000 0.00 0.00 0.00 3.86
2738 14054 1.768275 TCCTTTCACTGACTGCTCCAA 59.232 47.619 0.00 0.00 0.00 3.53
2739 14055 2.172505 TCCTTTCACTGACTGCTCCAAA 59.827 45.455 0.00 0.00 0.00 3.28
2740 14056 2.291741 CCTTTCACTGACTGCTCCAAAC 59.708 50.000 0.00 0.00 0.00 2.93
2741 14057 2.708216 TTCACTGACTGCTCCAAACA 57.292 45.000 0.00 0.00 0.00 2.83
2742 14058 2.936919 TCACTGACTGCTCCAAACAT 57.063 45.000 0.00 0.00 0.00 2.71
2745 14061 2.880268 CACTGACTGCTCCAAACATCAA 59.120 45.455 0.00 0.00 0.00 2.57
2749 14065 3.072330 TGACTGCTCCAAACATCAACCTA 59.928 43.478 0.00 0.00 0.00 3.08
2806 14157 2.550830 AGTTTCAGGCGTCATTGAGT 57.449 45.000 0.00 0.00 0.00 3.41
2819 14170 4.154015 CGTCATTGAGTGCATTAAACCTGA 59.846 41.667 0.00 0.00 0.00 3.86
2825 14176 6.258230 TGAGTGCATTAAACCTGAAGATTG 57.742 37.500 0.00 0.00 0.00 2.67
2826 14177 5.064441 AGTGCATTAAACCTGAAGATTGC 57.936 39.130 0.00 0.00 0.00 3.56
2860 14211 5.221224 CCATTTCTTTACAGTGGTTTCTGCA 60.221 40.000 0.00 0.00 38.84 4.41
2869 14220 3.438087 CAGTGGTTTCTGCATTAGACAGG 59.562 47.826 0.00 0.00 34.43 4.00
2872 14223 4.518970 GTGGTTTCTGCATTAGACAGGAAA 59.481 41.667 0.00 0.00 34.44 3.13
2879 14230 7.707624 TCTGCATTAGACAGGAAATTTCATT 57.292 32.000 19.49 4.69 35.78 2.57
2935 14305 6.371809 ACAAAGCAAAGAGATTACGAACAA 57.628 33.333 0.00 0.00 0.00 2.83
2942 14312 6.363473 CAAAGAGATTACGAACAAGGAACAC 58.637 40.000 0.00 0.00 0.00 3.32
2947 14317 1.967319 ACGAACAAGGAACACATGCT 58.033 45.000 0.00 0.00 0.00 3.79
2948 14318 2.297701 ACGAACAAGGAACACATGCTT 58.702 42.857 0.00 0.00 40.83 3.91
2985 14365 7.495934 ACTGAACATACATGGTAATAGTTCTGC 59.504 37.037 16.66 0.00 37.13 4.26
2992 14372 5.125417 ACATGGTAATAGTTCTGCGCAAAAT 59.875 36.000 13.05 10.77 0.00 1.82
3058 14438 8.918961 CTTGATGTAATCTAGTTCTCTCGTTT 57.081 34.615 0.00 0.00 45.81 3.60
3062 14442 9.453325 GATGTAATCTAGTTCTCTCGTTTAAGG 57.547 37.037 0.00 0.00 41.17 2.69
3063 14443 8.345724 TGTAATCTAGTTCTCTCGTTTAAGGT 57.654 34.615 0.00 0.00 0.00 3.50
3064 14444 8.800332 TGTAATCTAGTTCTCTCGTTTAAGGTT 58.200 33.333 0.00 0.00 0.00 3.50
3065 14445 9.074443 GTAATCTAGTTCTCTCGTTTAAGGTTG 57.926 37.037 0.00 0.00 0.00 3.77
3066 14446 6.645790 TCTAGTTCTCTCGTTTAAGGTTGT 57.354 37.500 0.00 0.00 0.00 3.32
3067 14447 7.750229 TCTAGTTCTCTCGTTTAAGGTTGTA 57.250 36.000 0.00 0.00 0.00 2.41
3068 14448 8.169977 TCTAGTTCTCTCGTTTAAGGTTGTAA 57.830 34.615 0.00 0.00 0.00 2.41
3069 14449 8.295288 TCTAGTTCTCTCGTTTAAGGTTGTAAG 58.705 37.037 0.00 0.00 0.00 2.34
3070 14450 6.221659 AGTTCTCTCGTTTAAGGTTGTAAGG 58.778 40.000 0.00 0.00 0.00 2.69
3071 14451 5.143376 TCTCTCGTTTAAGGTTGTAAGGG 57.857 43.478 0.00 0.00 0.00 3.95
3072 14452 3.667360 TCTCGTTTAAGGTTGTAAGGGC 58.333 45.455 0.00 0.00 0.00 5.19
3073 14453 3.071312 TCTCGTTTAAGGTTGTAAGGGCA 59.929 43.478 0.00 0.00 0.00 5.36
3074 14454 4.007659 CTCGTTTAAGGTTGTAAGGGCAT 58.992 43.478 0.00 0.00 0.00 4.40
3075 14455 4.004982 TCGTTTAAGGTTGTAAGGGCATC 58.995 43.478 0.00 0.00 0.00 3.91
3076 14456 3.754323 CGTTTAAGGTTGTAAGGGCATCA 59.246 43.478 0.00 0.00 0.00 3.07
3077 14457 4.398044 CGTTTAAGGTTGTAAGGGCATCAT 59.602 41.667 0.00 0.00 0.00 2.45
3078 14458 5.650543 GTTTAAGGTTGTAAGGGCATCATG 58.349 41.667 0.00 0.00 0.00 3.07
3079 14459 3.456380 AAGGTTGTAAGGGCATCATGT 57.544 42.857 0.00 0.00 0.00 3.21
3080 14460 2.726821 AGGTTGTAAGGGCATCATGTG 58.273 47.619 0.00 0.00 0.00 3.21
3081 14461 2.308570 AGGTTGTAAGGGCATCATGTGA 59.691 45.455 0.00 0.00 0.00 3.58
3082 14462 2.684881 GGTTGTAAGGGCATCATGTGAG 59.315 50.000 0.00 0.00 0.00 3.51
3083 14463 2.042686 TGTAAGGGCATCATGTGAGC 57.957 50.000 0.00 0.00 0.00 4.26
3084 14464 1.561076 TGTAAGGGCATCATGTGAGCT 59.439 47.619 0.00 0.00 0.00 4.09
3085 14465 1.945394 GTAAGGGCATCATGTGAGCTG 59.055 52.381 0.00 0.00 0.00 4.24
3086 14466 1.035932 AAGGGCATCATGTGAGCTGC 61.036 55.000 0.00 0.00 31.24 5.25
3087 14467 1.453379 GGGCATCATGTGAGCTGCT 60.453 57.895 0.00 0.00 32.33 4.24
3088 14468 1.725557 GGGCATCATGTGAGCTGCTG 61.726 60.000 7.01 0.00 32.33 4.41
3089 14469 1.725557 GGCATCATGTGAGCTGCTGG 61.726 60.000 7.01 0.00 32.33 4.85
3090 14470 1.728069 CATCATGTGAGCTGCTGGC 59.272 57.895 7.01 0.00 42.19 4.85
3128 14509 2.358898 CCCCGCATGAGATTAAACTTGG 59.641 50.000 0.00 0.00 0.00 3.61
3133 14514 3.119849 GCATGAGATTAAACTTGGTGCGT 60.120 43.478 0.00 0.00 0.00 5.24
3146 14527 1.733526 GTGCGTGGGGATAATTGCC 59.266 57.895 0.00 0.00 0.00 4.52
3168 14549 1.361204 TTGGGTTCTCATCTGCAGGA 58.639 50.000 15.13 2.91 0.00 3.86
3185 14566 3.181499 GCAGGATTTCATTCACAGCAGAG 60.181 47.826 0.00 0.00 0.00 3.35
3238 14620 4.202326 ATCAGACAGATACATGCTGATGCA 60.202 41.667 8.41 0.00 44.11 3.96
3255 14637 5.701855 TGATGCATGACATTTGTAACACTG 58.298 37.500 2.46 0.00 39.84 3.66
3257 14639 4.140536 TGCATGACATTTGTAACACTGGA 58.859 39.130 0.00 0.00 0.00 3.86
3258 14640 4.582240 TGCATGACATTTGTAACACTGGAA 59.418 37.500 0.00 0.00 0.00 3.53
3259 14641 5.243507 TGCATGACATTTGTAACACTGGAAT 59.756 36.000 0.00 0.00 0.00 3.01
3260 14642 5.801947 GCATGACATTTGTAACACTGGAATC 59.198 40.000 0.00 0.00 0.00 2.52
3261 14643 5.605564 TGACATTTGTAACACTGGAATCG 57.394 39.130 0.00 0.00 0.00 3.34
3262 14644 4.454161 TGACATTTGTAACACTGGAATCGG 59.546 41.667 0.00 0.00 0.00 4.18
3263 14645 4.647611 ACATTTGTAACACTGGAATCGGA 58.352 39.130 0.00 0.00 0.00 4.55
3264 14646 5.067273 ACATTTGTAACACTGGAATCGGAA 58.933 37.500 0.00 0.00 0.00 4.30
3265 14647 5.533154 ACATTTGTAACACTGGAATCGGAAA 59.467 36.000 0.00 0.00 0.00 3.13
3266 14648 5.682943 TTTGTAACACTGGAATCGGAAAG 57.317 39.130 0.00 0.00 0.00 2.62
3268 14650 5.160607 TGTAACACTGGAATCGGAAAGAT 57.839 39.130 0.00 0.00 42.43 2.40
3269 14651 4.935205 TGTAACACTGGAATCGGAAAGATG 59.065 41.667 0.00 0.00 40.02 2.90
3271 14653 2.026822 ACACTGGAATCGGAAAGATGCT 60.027 45.455 0.00 0.00 40.02 3.79
3272 14654 2.353889 CACTGGAATCGGAAAGATGCTG 59.646 50.000 0.00 0.00 40.02 4.41
3273 14655 2.237143 ACTGGAATCGGAAAGATGCTGA 59.763 45.455 0.00 0.00 40.02 4.26
3274 14656 3.118112 ACTGGAATCGGAAAGATGCTGAT 60.118 43.478 0.00 0.00 40.02 2.90
3277 14659 2.634815 ATCGGAAAGATGCTGATGCT 57.365 45.000 0.00 0.00 38.36 3.79
3282 14664 5.233225 TCGGAAAGATGCTGATGCTTATAG 58.767 41.667 0.00 0.00 40.48 1.31
3292 14674 3.415212 TGATGCTTATAGCCTGCAATCC 58.585 45.455 0.00 0.00 41.51 3.01
3297 14679 3.802329 GCTTATAGCCTGCAATCCGTACA 60.802 47.826 0.00 0.00 34.48 2.90
3301 14683 1.812571 AGCCTGCAATCCGTACAAAAG 59.187 47.619 0.00 0.00 0.00 2.27
3303 14685 2.432444 CCTGCAATCCGTACAAAAGGA 58.568 47.619 0.00 0.00 41.30 3.36
3309 14691 5.531659 TGCAATCCGTACAAAAGGAAAGTTA 59.468 36.000 0.00 0.00 40.32 2.24
3313 14695 7.611213 ATCCGTACAAAAGGAAAGTTAGATG 57.389 36.000 0.00 0.00 40.32 2.90
3316 14698 7.333423 TCCGTACAAAAGGAAAGTTAGATGATG 59.667 37.037 0.00 0.00 32.86 3.07
3319 14701 9.994432 GTACAAAAGGAAAGTTAGATGATGATG 57.006 33.333 0.00 0.00 0.00 3.07
3327 14709 9.118300 GGAAAGTTAGATGATGATGTTTCAGAT 57.882 33.333 0.00 0.00 34.73 2.90
3331 14713 7.437565 AGTTAGATGATGATGTTTCAGATCACG 59.562 37.037 0.00 0.00 34.73 4.35
3342 14724 2.076100 TCAGATCACGCACACCAAATC 58.924 47.619 0.00 0.00 0.00 2.17
3343 14725 1.078709 AGATCACGCACACCAAATCG 58.921 50.000 0.00 0.00 0.00 3.34
3360 14742 2.589798 TCGGTGTCGTGTTTTCTTCT 57.410 45.000 0.00 0.00 37.69 2.85
3368 14750 6.458342 GGTGTCGTGTTTTCTTCTTCTTCATT 60.458 38.462 0.00 0.00 0.00 2.57
3371 14753 6.967199 GTCGTGTTTTCTTCTTCTTCATTTGT 59.033 34.615 0.00 0.00 0.00 2.83
3372 14754 8.120465 GTCGTGTTTTCTTCTTCTTCATTTGTA 58.880 33.333 0.00 0.00 0.00 2.41
3405 14787 4.324267 AGGTTACTGTGTTTACCTGATGC 58.676 43.478 0.00 0.00 39.47 3.91
3406 14788 4.069304 GGTTACTGTGTTTACCTGATGCA 58.931 43.478 0.00 0.00 0.00 3.96
3407 14789 4.517453 GGTTACTGTGTTTACCTGATGCAA 59.483 41.667 0.00 0.00 0.00 4.08
3408 14790 5.183140 GGTTACTGTGTTTACCTGATGCAAT 59.817 40.000 0.00 0.00 0.00 3.56
3409 14791 4.771590 ACTGTGTTTACCTGATGCAATG 57.228 40.909 0.00 0.00 0.00 2.82
3410 14792 4.397420 ACTGTGTTTACCTGATGCAATGA 58.603 39.130 0.00 0.00 0.00 2.57
3411 14793 5.012239 ACTGTGTTTACCTGATGCAATGAT 58.988 37.500 0.00 0.00 0.00 2.45
3412 14794 6.179756 ACTGTGTTTACCTGATGCAATGATA 58.820 36.000 0.00 0.00 0.00 2.15
3413 14795 6.830324 ACTGTGTTTACCTGATGCAATGATAT 59.170 34.615 0.00 0.00 0.00 1.63
3414 14796 7.012704 ACTGTGTTTACCTGATGCAATGATATC 59.987 37.037 0.00 0.00 0.00 1.63
3415 14797 7.056006 TGTGTTTACCTGATGCAATGATATCT 58.944 34.615 3.98 0.00 0.00 1.98
3416 14798 7.557358 TGTGTTTACCTGATGCAATGATATCTT 59.443 33.333 3.98 0.00 0.00 2.40
3417 14799 8.072567 GTGTTTACCTGATGCAATGATATCTTC 58.927 37.037 3.98 0.00 0.00 2.87
3418 14800 7.774625 TGTTTACCTGATGCAATGATATCTTCA 59.225 33.333 3.98 0.00 39.12 3.02
3419 14801 7.734924 TTACCTGATGCAATGATATCTTCAC 57.265 36.000 3.98 0.00 37.11 3.18
3420 14802 5.687780 ACCTGATGCAATGATATCTTCACA 58.312 37.500 3.98 0.68 37.11 3.58
3421 14803 5.763698 ACCTGATGCAATGATATCTTCACAG 59.236 40.000 3.98 4.97 37.11 3.66
3422 14804 5.995897 CCTGATGCAATGATATCTTCACAGA 59.004 40.000 3.98 0.00 37.11 3.41
3423 14805 6.655425 CCTGATGCAATGATATCTTCACAGAT 59.345 38.462 3.98 0.00 42.83 2.90
3424 14806 7.822822 CCTGATGCAATGATATCTTCACAGATA 59.177 37.037 3.98 0.00 44.61 1.98
3425 14807 8.773404 TGATGCAATGATATCTTCACAGATAG 57.227 34.615 3.98 0.00 43.89 2.08
3426 14808 7.333672 TGATGCAATGATATCTTCACAGATAGC 59.666 37.037 3.98 1.33 45.27 2.97
3427 14809 5.936372 TGCAATGATATCTTCACAGATAGCC 59.064 40.000 3.98 0.00 44.68 3.93
3428 14810 5.936372 GCAATGATATCTTCACAGATAGCCA 59.064 40.000 3.98 3.40 44.68 4.75
3429 14811 6.128336 GCAATGATATCTTCACAGATAGCCAC 60.128 42.308 3.98 0.00 44.68 5.01
3430 14812 5.474578 TGATATCTTCACAGATAGCCACC 57.525 43.478 3.98 0.00 44.68 4.61
3431 14813 4.901250 TGATATCTTCACAGATAGCCACCA 59.099 41.667 3.98 0.00 44.68 4.17
3432 14814 5.545335 TGATATCTTCACAGATAGCCACCAT 59.455 40.000 3.98 0.00 44.68 3.55
3433 14815 3.827008 TCTTCACAGATAGCCACCATC 57.173 47.619 0.00 0.00 0.00 3.51
3434 14816 3.106827 TCTTCACAGATAGCCACCATCA 58.893 45.455 0.00 0.00 0.00 3.07
3435 14817 3.519107 TCTTCACAGATAGCCACCATCAA 59.481 43.478 0.00 0.00 0.00 2.57
3436 14818 3.548745 TCACAGATAGCCACCATCAAG 57.451 47.619 0.00 0.00 0.00 3.02
3437 14819 1.945394 CACAGATAGCCACCATCAAGC 59.055 52.381 0.00 0.00 0.00 4.01
3438 14820 1.561076 ACAGATAGCCACCATCAAGCA 59.439 47.619 0.00 0.00 0.00 3.91
3439 14821 2.025981 ACAGATAGCCACCATCAAGCAA 60.026 45.455 0.00 0.00 0.00 3.91
3440 14822 3.018856 CAGATAGCCACCATCAAGCAAA 58.981 45.455 0.00 0.00 0.00 3.68
3441 14823 3.019564 AGATAGCCACCATCAAGCAAAC 58.980 45.455 0.00 0.00 0.00 2.93
3442 14824 2.284754 TAGCCACCATCAAGCAAACA 57.715 45.000 0.00 0.00 0.00 2.83
3443 14825 0.675633 AGCCACCATCAAGCAAACAC 59.324 50.000 0.00 0.00 0.00 3.32
3444 14826 0.388659 GCCACCATCAAGCAAACACA 59.611 50.000 0.00 0.00 0.00 3.72
3445 14827 1.001181 GCCACCATCAAGCAAACACAT 59.999 47.619 0.00 0.00 0.00 3.21
3446 14828 2.548493 GCCACCATCAAGCAAACACATT 60.548 45.455 0.00 0.00 0.00 2.71
3447 14829 3.061322 CCACCATCAAGCAAACACATTG 58.939 45.455 0.00 0.00 42.21 2.82
3448 14830 3.061322 CACCATCAAGCAAACACATTGG 58.939 45.455 0.00 0.00 39.54 3.16
3449 14831 2.037511 ACCATCAAGCAAACACATTGGG 59.962 45.455 0.00 0.00 39.54 4.12
3450 14832 2.299582 CCATCAAGCAAACACATTGGGA 59.700 45.455 0.00 0.00 39.54 4.37
3451 14833 3.244146 CCATCAAGCAAACACATTGGGAA 60.244 43.478 0.00 0.00 39.54 3.97
3452 14834 4.563993 CCATCAAGCAAACACATTGGGAAT 60.564 41.667 0.00 0.00 39.54 3.01
3453 14835 4.686191 TCAAGCAAACACATTGGGAATT 57.314 36.364 0.00 0.00 39.54 2.17
3454 14836 5.798125 TCAAGCAAACACATTGGGAATTA 57.202 34.783 0.00 0.00 39.54 1.40
3455 14837 5.537188 TCAAGCAAACACATTGGGAATTAC 58.463 37.500 0.00 0.00 39.54 1.89
3456 14838 5.304101 TCAAGCAAACACATTGGGAATTACT 59.696 36.000 0.00 0.00 39.54 2.24
3457 14839 5.391312 AGCAAACACATTGGGAATTACTC 57.609 39.130 0.00 0.00 39.54 2.59
3458 14840 4.832266 AGCAAACACATTGGGAATTACTCA 59.168 37.500 0.00 0.00 39.54 3.41
3459 14841 5.304101 AGCAAACACATTGGGAATTACTCAA 59.696 36.000 0.00 0.00 43.57 3.02
3461 14843 7.178274 AGCAAACACATTGGGAATTACTCAATA 59.822 33.333 0.00 0.00 46.61 1.90
3462 14844 7.816995 GCAAACACATTGGGAATTACTCAATAA 59.183 33.333 0.00 0.00 46.61 1.40
3463 14845 9.139174 CAAACACATTGGGAATTACTCAATAAC 57.861 33.333 0.00 0.00 46.61 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 9.606631 TGAATTTGTTGTTGCCTTATTTTAACT 57.393 25.926 0.00 0.00 0.00 2.24
8 9 7.378181 CCTAAGTGAATTTGTTGTTGCCTTAT 58.622 34.615 0.00 0.00 0.00 1.73
21 22 4.082787 CGGAATGTGTGCCTAAGTGAATTT 60.083 41.667 0.00 0.00 0.00 1.82
58 59 4.458295 ACAAGGAAAGAGAAGCATCACATG 59.542 41.667 0.00 0.00 0.00 3.21
59 60 4.660168 ACAAGGAAAGAGAAGCATCACAT 58.340 39.130 0.00 0.00 0.00 3.21
62 63 4.717877 TGAACAAGGAAAGAGAAGCATCA 58.282 39.130 0.00 0.00 0.00 3.07
70 71 7.616313 ACCTACTCTAATGAACAAGGAAAGAG 58.384 38.462 0.00 0.00 36.06 2.85
72 73 9.372369 CTAACCTACTCTAATGAACAAGGAAAG 57.628 37.037 0.00 0.00 0.00 2.62
120 122 5.575157 ACAAACTGTTTTCCCCCAATTTTT 58.425 33.333 2.41 0.00 0.00 1.94
121 123 5.045213 AGACAAACTGTTTTCCCCCAATTTT 60.045 36.000 2.41 0.00 0.00 1.82
122 124 4.473196 AGACAAACTGTTTTCCCCCAATTT 59.527 37.500 2.41 0.00 0.00 1.82
123 125 4.037222 AGACAAACTGTTTTCCCCCAATT 58.963 39.130 2.41 0.00 0.00 2.32
124 126 3.653164 AGACAAACTGTTTTCCCCCAAT 58.347 40.909 2.41 0.00 0.00 3.16
127 129 4.481368 AAAAGACAAACTGTTTTCCCCC 57.519 40.909 2.41 0.00 0.00 5.40
148 150 4.511963 ATTTTTCCCCTCCCCCTAAAAA 57.488 40.909 0.00 0.00 34.58 1.94
149 151 4.613396 ACTATTTTTCCCCTCCCCCTAAAA 59.387 41.667 0.00 0.00 0.00 1.52
150 152 4.196837 ACTATTTTTCCCCTCCCCCTAAA 58.803 43.478 0.00 0.00 0.00 1.85
151 153 3.835288 ACTATTTTTCCCCTCCCCCTAA 58.165 45.455 0.00 0.00 0.00 2.69
152 154 3.536913 ACTATTTTTCCCCTCCCCCTA 57.463 47.619 0.00 0.00 0.00 3.53
153 155 2.395766 ACTATTTTTCCCCTCCCCCT 57.604 50.000 0.00 0.00 0.00 4.79
154 156 3.104512 CAAACTATTTTTCCCCTCCCCC 58.895 50.000 0.00 0.00 0.00 5.40
155 157 3.767673 GACAAACTATTTTTCCCCTCCCC 59.232 47.826 0.00 0.00 0.00 4.81
156 158 4.673968 AGACAAACTATTTTTCCCCTCCC 58.326 43.478 0.00 0.00 0.00 4.30
157 159 6.665992 AAAGACAAACTATTTTTCCCCTCC 57.334 37.500 0.00 0.00 0.00 4.30
158 160 9.692749 CTTAAAAGACAAACTATTTTTCCCCTC 57.307 33.333 0.00 0.00 0.00 4.30
159 161 9.429109 TCTTAAAAGACAAACTATTTTTCCCCT 57.571 29.630 0.00 0.00 0.00 4.79
181 183 7.384115 CCAAACTAACTGAATCTCGTGTTCTTA 59.616 37.037 0.00 0.00 0.00 2.10
205 207 2.825982 CGGCCCATATTCGACCCA 59.174 61.111 0.00 0.00 0.00 4.51
273 275 6.348704 GGAGCTCGAATGGATTAGTAGTACTC 60.349 46.154 5.96 0.00 0.00 2.59
274 276 5.474189 GGAGCTCGAATGGATTAGTAGTACT 59.526 44.000 7.83 8.14 0.00 2.73
275 277 5.474189 AGGAGCTCGAATGGATTAGTAGTAC 59.526 44.000 7.83 0.00 0.00 2.73
276 278 5.632118 AGGAGCTCGAATGGATTAGTAGTA 58.368 41.667 7.83 0.00 0.00 1.82
277 279 4.475345 AGGAGCTCGAATGGATTAGTAGT 58.525 43.478 7.83 0.00 0.00 2.73
280 282 4.279671 CAGTAGGAGCTCGAATGGATTAGT 59.720 45.833 7.83 0.00 0.00 2.24
281 283 4.804108 CAGTAGGAGCTCGAATGGATTAG 58.196 47.826 7.83 0.00 0.00 1.73
282 284 3.005897 GCAGTAGGAGCTCGAATGGATTA 59.994 47.826 7.83 0.00 0.00 1.75
283 285 2.224161 GCAGTAGGAGCTCGAATGGATT 60.224 50.000 7.83 0.00 0.00 3.01
284 286 1.342819 GCAGTAGGAGCTCGAATGGAT 59.657 52.381 7.83 0.00 0.00 3.41
285 287 0.747255 GCAGTAGGAGCTCGAATGGA 59.253 55.000 7.83 0.00 0.00 3.41
286 288 0.749649 AGCAGTAGGAGCTCGAATGG 59.250 55.000 7.83 0.00 38.01 3.16
287 289 1.406898 TCAGCAGTAGGAGCTCGAATG 59.593 52.381 7.83 8.89 41.14 2.67
289 291 1.545841 TTCAGCAGTAGGAGCTCGAA 58.454 50.000 7.83 0.00 41.14 3.71
290 292 1.545841 TTTCAGCAGTAGGAGCTCGA 58.454 50.000 7.83 0.00 41.14 4.04
291 293 2.370281 TTTTCAGCAGTAGGAGCTCG 57.630 50.000 7.83 0.00 41.14 5.03
489 640 1.073923 TGCTTGAGAAGGGAAGGGAAC 59.926 52.381 0.00 0.00 0.00 3.62
529 680 1.273887 GCAAGAATCGACATCGCCG 59.726 57.895 0.00 0.00 39.60 6.46
559 763 2.089980 GCCAAGTGCATCAACAGATCT 58.910 47.619 0.00 0.00 40.77 2.75
590 814 7.340487 GGACATTTCCTCTGGAATTTCAGTTAT 59.660 37.037 13.58 0.00 41.71 1.89
591 815 6.659242 GGACATTTCCTCTGGAATTTCAGTTA 59.341 38.462 13.58 0.00 41.71 2.24
593 817 5.012893 GGACATTTCCTCTGGAATTTCAGT 58.987 41.667 13.58 0.00 41.71 3.41
672 984 0.034059 ACCTGCTGAACTGAACTCGG 59.966 55.000 0.00 0.00 0.00 4.63
722 1063 8.352942 CAATCACCTAATGTAAAAGCCCTAATC 58.647 37.037 0.00 0.00 0.00 1.75
788 1235 9.965824 CTTGGAACAGTCACTTAATTACATTTT 57.034 29.630 0.00 0.00 42.39 1.82
789 1236 9.349713 TCTTGGAACAGTCACTTAATTACATTT 57.650 29.630 0.00 0.00 42.39 2.32
790 1237 8.918202 TCTTGGAACAGTCACTTAATTACATT 57.082 30.769 0.00 0.00 42.39 2.71
791 1238 9.520515 AATCTTGGAACAGTCACTTAATTACAT 57.479 29.630 0.00 0.00 42.39 2.29
792 1239 8.918202 AATCTTGGAACAGTCACTTAATTACA 57.082 30.769 0.00 0.00 42.39 2.41
848 1460 6.096705 AGGAAACATCAGTGAAACATTGAACA 59.903 34.615 0.00 0.00 41.43 3.18
1212 7323 1.409661 GGCCACCATCCGGAATAGTTT 60.410 52.381 9.01 0.00 35.59 2.66
1243 7354 1.480545 GCCTTGGTTGTTCAACTGGTT 59.519 47.619 14.04 0.00 0.00 3.67
1293 7404 5.153950 AGCTTAAAGAAAGATCGGACAGT 57.846 39.130 0.00 0.00 37.38 3.55
1323 7434 4.504864 CCAAGACCAGAGTCACCAATGTAA 60.505 45.833 0.00 0.00 46.15 2.41
1374 7485 0.601046 CACAGTTCAGCCTGAGCGAA 60.601 55.000 2.74 0.00 46.67 4.70
1390 7501 1.140852 AGAAGTTACTGCTGGTGCACA 59.859 47.619 20.43 3.92 45.31 4.57
1404 7515 5.238650 CACACGAAAAATCCCAGTAGAAGTT 59.761 40.000 0.00 0.00 0.00 2.66
1425 7536 3.215568 CTGCAACCAACCGCCACA 61.216 61.111 0.00 0.00 0.00 4.17
1458 7569 2.105649 TGCCATACAGTCAACAAGGTGA 59.894 45.455 0.00 0.00 0.00 4.02
1475 7586 1.229177 TCCCTGCTGTCTACTGCCA 60.229 57.895 9.15 0.00 39.65 4.92
1515 7626 8.055181 ACAACAAGTTCTACCAATGATCCATAT 58.945 33.333 0.00 0.00 0.00 1.78
1529 7640 5.992829 TCGCAATCCTTTACAACAAGTTCTA 59.007 36.000 0.00 0.00 0.00 2.10
1530 7641 4.819630 TCGCAATCCTTTACAACAAGTTCT 59.180 37.500 0.00 0.00 0.00 3.01
1598 7709 8.477256 TCTCAAACACAAATTTTTGGAGATTCT 58.523 29.630 9.06 0.00 42.34 2.40
1616 7727 8.160765 TCCAGTAGTTTCCATTAATCTCAAACA 58.839 33.333 12.62 1.77 30.74 2.83
1635 7746 1.330655 ACGCCCCTGACATCCAGTAG 61.331 60.000 0.00 0.00 41.33 2.57
1653 12967 0.611340 ACACGTAGGAGGGGTCAGAC 60.611 60.000 0.00 0.00 0.00 3.51
2229 13544 1.817099 GCGGAGGGTGAGATTGCTG 60.817 63.158 0.00 0.00 0.00 4.41
2423 13738 0.391661 CCTGTTCATGTCCCTGTCCG 60.392 60.000 0.00 0.00 0.00 4.79
2425 13740 2.859165 TTCCTGTTCATGTCCCTGTC 57.141 50.000 0.00 0.00 0.00 3.51
2431 13746 2.095718 GGCGTCTTTTCCTGTTCATGTC 60.096 50.000 0.00 0.00 0.00 3.06
2435 13750 0.882927 CCGGCGTCTTTTCCTGTTCA 60.883 55.000 6.01 0.00 0.00 3.18
2469 13784 8.096414 AGCAAACACAAATTAATAGCCAAAGAT 58.904 29.630 0.00 0.00 0.00 2.40
2553 13868 1.259142 TGCATGGAAATGGCAGGTGG 61.259 55.000 0.00 0.00 32.95 4.61
2572 13887 9.791801 AACATCCAAAGCCAATTAAAACTTATT 57.208 25.926 0.00 0.00 0.00 1.40
2574 13889 8.646900 AGAACATCCAAAGCCAATTAAAACTTA 58.353 29.630 0.00 0.00 0.00 2.24
2580 13896 7.175104 AGTCTAGAACATCCAAAGCCAATTAA 58.825 34.615 0.00 0.00 0.00 1.40
2581 13897 6.721318 AGTCTAGAACATCCAAAGCCAATTA 58.279 36.000 0.00 0.00 0.00 1.40
2591 13907 5.690865 ACCAAAACAAGTCTAGAACATCCA 58.309 37.500 0.00 0.00 0.00 3.41
2623 13939 9.305925 GAATTATGGCAAATTCCTAAAACAGAG 57.694 33.333 17.15 0.00 39.10 3.35
2629 13945 6.756074 CGCAAGAATTATGGCAAATTCCTAAA 59.244 34.615 21.07 0.00 43.78 1.85
2644 13960 9.244799 CTACTGTCATAACATACGCAAGAATTA 57.755 33.333 0.00 0.00 36.08 1.40
2658 13974 6.648725 ACAAATCGAAGCTACTGTCATAAC 57.351 37.500 0.00 0.00 0.00 1.89
2694 14010 8.354426 GGAAGTAGACTTTACAGATATGAGGAC 58.646 40.741 0.00 0.00 36.11 3.85
2696 14012 8.472007 AGGAAGTAGACTTTACAGATATGAGG 57.528 38.462 0.00 0.00 36.11 3.86
2709 14025 5.740513 GCAGTCAGTGAAAGGAAGTAGACTT 60.741 44.000 0.00 0.00 39.23 3.01
2710 14026 4.262249 GCAGTCAGTGAAAGGAAGTAGACT 60.262 45.833 0.00 0.00 35.66 3.24
2711 14027 3.991121 GCAGTCAGTGAAAGGAAGTAGAC 59.009 47.826 0.00 0.00 0.00 2.59
2712 14028 3.898123 AGCAGTCAGTGAAAGGAAGTAGA 59.102 43.478 0.00 0.00 0.00 2.59
2713 14029 4.241681 GAGCAGTCAGTGAAAGGAAGTAG 58.758 47.826 0.00 0.00 0.00 2.57
2716 14032 2.224378 TGGAGCAGTCAGTGAAAGGAAG 60.224 50.000 0.00 0.00 0.00 3.46
2717 14033 1.768275 TGGAGCAGTCAGTGAAAGGAA 59.232 47.619 0.00 0.00 0.00 3.36
2726 14042 2.227388 GGTTGATGTTTGGAGCAGTCAG 59.773 50.000 0.00 0.00 0.00 3.51
2729 14045 2.664402 AGGTTGATGTTTGGAGCAGT 57.336 45.000 0.00 0.00 0.00 4.40
2730 14046 6.949352 ATAATAGGTTGATGTTTGGAGCAG 57.051 37.500 0.00 0.00 0.00 4.24
2731 14047 7.118723 AGAATAATAGGTTGATGTTTGGAGCA 58.881 34.615 0.00 0.00 0.00 4.26
2732 14048 7.573968 AGAATAATAGGTTGATGTTTGGAGC 57.426 36.000 0.00 0.00 0.00 4.70
2745 14061 9.574516 CAGGCAAAAGGTATAAGAATAATAGGT 57.425 33.333 0.00 0.00 0.00 3.08
2749 14065 8.416329 CAAGCAGGCAAAAGGTATAAGAATAAT 58.584 33.333 0.00 0.00 0.00 1.28
2761 14077 4.348857 GCACAAGCAGGCAAAAGG 57.651 55.556 0.00 0.00 41.58 3.11
2789 14140 0.874390 GCACTCAATGACGCCTGAAA 59.126 50.000 0.00 0.00 0.00 2.69
2806 14157 5.653507 GATGCAATCTTCAGGTTTAATGCA 58.346 37.500 0.00 0.00 45.36 3.96
2825 14176 6.127897 ACTGTAAAGAAATGGTTAGCAGATGC 60.128 38.462 0.00 0.00 42.49 3.91
2826 14177 7.246311 CACTGTAAAGAAATGGTTAGCAGATG 58.754 38.462 0.00 0.00 0.00 2.90
2869 14220 9.820229 TGTTGTGTCGATAAGTAATGAAATTTC 57.180 29.630 11.41 11.41 37.87 2.17
2872 14223 8.317891 TGTGTTGTGTCGATAAGTAATGAAAT 57.682 30.769 0.00 0.00 0.00 2.17
2905 14256 8.227791 TCGTAATCTCTTTGCTTTGTTTCATAC 58.772 33.333 0.00 0.00 0.00 2.39
2985 14365 2.727798 CTGTTTTCTCTGCCATTTTGCG 59.272 45.455 0.00 0.00 0.00 4.85
2992 14372 4.574674 ACCATATCTGTTTTCTCTGCCA 57.425 40.909 0.00 0.00 0.00 4.92
3050 14430 3.683340 GCCCTTACAACCTTAAACGAGAG 59.317 47.826 0.00 0.00 0.00 3.20
3051 14431 3.071312 TGCCCTTACAACCTTAAACGAGA 59.929 43.478 0.00 0.00 0.00 4.04
3052 14432 3.404899 TGCCCTTACAACCTTAAACGAG 58.595 45.455 0.00 0.00 0.00 4.18
3055 14435 5.185056 ACATGATGCCCTTACAACCTTAAAC 59.815 40.000 0.00 0.00 0.00 2.01
3056 14436 5.184864 CACATGATGCCCTTACAACCTTAAA 59.815 40.000 0.00 0.00 0.00 1.52
3057 14437 4.704540 CACATGATGCCCTTACAACCTTAA 59.295 41.667 0.00 0.00 0.00 1.85
3058 14438 4.018870 TCACATGATGCCCTTACAACCTTA 60.019 41.667 0.00 0.00 0.00 2.69
3059 14439 3.091545 CACATGATGCCCTTACAACCTT 58.908 45.455 0.00 0.00 0.00 3.50
3060 14440 2.308570 TCACATGATGCCCTTACAACCT 59.691 45.455 0.00 0.00 0.00 3.50
3061 14441 2.684881 CTCACATGATGCCCTTACAACC 59.315 50.000 0.00 0.00 0.00 3.77
3062 14442 2.098117 GCTCACATGATGCCCTTACAAC 59.902 50.000 0.00 0.00 0.00 3.32
3063 14443 2.025981 AGCTCACATGATGCCCTTACAA 60.026 45.455 0.00 0.00 0.00 2.41
3064 14444 1.561076 AGCTCACATGATGCCCTTACA 59.439 47.619 0.00 0.00 0.00 2.41
3065 14445 1.945394 CAGCTCACATGATGCCCTTAC 59.055 52.381 0.00 0.00 0.00 2.34
3066 14446 1.748244 GCAGCTCACATGATGCCCTTA 60.748 52.381 0.00 0.00 42.74 2.69
3067 14447 1.035932 GCAGCTCACATGATGCCCTT 61.036 55.000 0.00 0.00 42.74 3.95
3068 14448 1.453379 GCAGCTCACATGATGCCCT 60.453 57.895 0.00 0.00 42.74 5.19
3069 14449 3.117372 GCAGCTCACATGATGCCC 58.883 61.111 0.00 0.00 42.74 5.36
3072 14452 1.728069 GCCAGCAGCTCACATGATG 59.272 57.895 0.00 0.00 38.99 3.07
3073 14453 4.237445 GCCAGCAGCTCACATGAT 57.763 55.556 0.00 0.00 38.99 2.45
3082 14462 2.803479 GCCATTGTAGCCAGCAGC 59.197 61.111 0.00 0.00 44.25 5.25
3083 14463 2.475466 CCGCCATTGTAGCCAGCAG 61.475 63.158 0.00 0.00 0.00 4.24
3084 14464 2.438254 CCGCCATTGTAGCCAGCA 60.438 61.111 0.00 0.00 0.00 4.41
3085 14465 3.892581 GCCGCCATTGTAGCCAGC 61.893 66.667 0.00 0.00 0.00 4.85
3086 14466 2.438254 TGCCGCCATTGTAGCCAG 60.438 61.111 0.00 0.00 0.00 4.85
3087 14467 2.438254 CTGCCGCCATTGTAGCCA 60.438 61.111 0.00 0.00 0.00 4.75
3088 14468 3.892581 GCTGCCGCCATTGTAGCC 61.893 66.667 0.00 0.00 35.69 3.93
3089 14469 4.241999 CGCTGCCGCCATTGTAGC 62.242 66.667 0.00 0.00 37.99 3.58
3116 14497 2.159382 CCCACGCACCAAGTTTAATCT 58.841 47.619 0.00 0.00 0.00 2.40
3128 14509 1.733526 GGCAATTATCCCCACGCAC 59.266 57.895 0.00 0.00 0.00 5.34
3133 14514 1.343884 CCCAAAGGGCAATTATCCCCA 60.344 52.381 10.48 0.00 45.03 4.96
3146 14527 2.089980 CTGCAGATGAGAACCCAAAGG 58.910 52.381 8.42 0.00 40.04 3.11
3168 14549 3.760684 GGGTTCTCTGCTGTGAATGAAAT 59.239 43.478 10.66 0.00 0.00 2.17
3238 14620 5.123820 CCGATTCCAGTGTTACAAATGTCAT 59.876 40.000 0.00 0.00 0.00 3.06
3239 14621 4.454161 CCGATTCCAGTGTTACAAATGTCA 59.546 41.667 0.00 0.00 0.00 3.58
3240 14622 4.693566 TCCGATTCCAGTGTTACAAATGTC 59.306 41.667 0.00 0.00 0.00 3.06
3247 14629 4.201822 GCATCTTTCCGATTCCAGTGTTAC 60.202 45.833 0.00 0.00 0.00 2.50
3255 14637 2.031333 GCATCAGCATCTTTCCGATTCC 60.031 50.000 0.00 0.00 41.58 3.01
3257 14639 2.928334 AGCATCAGCATCTTTCCGATT 58.072 42.857 0.00 0.00 45.49 3.34
3258 14640 2.634815 AGCATCAGCATCTTTCCGAT 57.365 45.000 0.00 0.00 45.49 4.18
3259 14641 2.408271 AAGCATCAGCATCTTTCCGA 57.592 45.000 0.00 0.00 45.49 4.55
3260 14642 4.142945 GCTATAAGCATCAGCATCTTTCCG 60.143 45.833 0.00 0.00 45.49 4.30
3261 14643 4.155644 GGCTATAAGCATCAGCATCTTTCC 59.844 45.833 0.78 0.00 44.75 3.13
3262 14644 5.002516 AGGCTATAAGCATCAGCATCTTTC 58.997 41.667 0.78 0.00 44.75 2.62
3263 14645 4.760715 CAGGCTATAAGCATCAGCATCTTT 59.239 41.667 0.78 0.00 44.75 2.52
3264 14646 4.325119 CAGGCTATAAGCATCAGCATCTT 58.675 43.478 0.78 0.00 44.75 2.40
3265 14647 3.869140 GCAGGCTATAAGCATCAGCATCT 60.869 47.826 0.78 0.00 44.75 2.90
3266 14648 2.419324 GCAGGCTATAAGCATCAGCATC 59.581 50.000 0.78 0.00 44.75 3.91
3268 14650 1.141455 TGCAGGCTATAAGCATCAGCA 59.859 47.619 0.78 0.00 44.75 4.41
3269 14651 1.888215 TGCAGGCTATAAGCATCAGC 58.112 50.000 0.78 0.00 44.75 4.26
3271 14653 3.415212 GGATTGCAGGCTATAAGCATCA 58.585 45.455 0.78 0.00 44.75 3.07
3272 14654 2.417933 CGGATTGCAGGCTATAAGCATC 59.582 50.000 0.78 0.00 44.75 3.91
3273 14655 2.224621 ACGGATTGCAGGCTATAAGCAT 60.225 45.455 0.78 0.00 44.75 3.79
3274 14656 1.140852 ACGGATTGCAGGCTATAAGCA 59.859 47.619 0.78 0.00 44.75 3.91
3277 14659 4.409718 TTGTACGGATTGCAGGCTATAA 57.590 40.909 0.00 0.00 0.00 0.98
3282 14664 1.135402 CCTTTTGTACGGATTGCAGGC 60.135 52.381 0.00 0.00 0.00 4.85
3292 14674 8.251750 TCATCATCTAACTTTCCTTTTGTACG 57.748 34.615 0.00 0.00 0.00 3.67
3301 14683 8.498054 TCTGAAACATCATCATCTAACTTTCC 57.502 34.615 0.00 0.00 0.00 3.13
3303 14685 9.676861 TGATCTGAAACATCATCATCTAACTTT 57.323 29.630 0.00 0.00 0.00 2.66
3309 14691 4.510711 GCGTGATCTGAAACATCATCATCT 59.489 41.667 0.00 0.00 32.86 2.90
3313 14695 3.371898 TGTGCGTGATCTGAAACATCATC 59.628 43.478 0.00 0.00 32.86 2.92
3316 14698 2.159653 GGTGTGCGTGATCTGAAACATC 60.160 50.000 0.00 0.00 0.00 3.06
3319 14701 1.225855 TGGTGTGCGTGATCTGAAAC 58.774 50.000 0.00 0.00 0.00 2.78
3327 14709 3.649096 CCGATTTGGTGTGCGTGA 58.351 55.556 0.00 0.00 0.00 4.35
3342 14724 2.864343 AGAAGAAGAAAACACGACACCG 59.136 45.455 0.00 0.00 42.50 4.94
3343 14725 4.331717 TGAAGAAGAAGAAAACACGACACC 59.668 41.667 0.00 0.00 0.00 4.16
3345 14727 6.677781 AATGAAGAAGAAGAAAACACGACA 57.322 33.333 0.00 0.00 0.00 4.35
3347 14729 7.083875 ACAAATGAAGAAGAAGAAAACACGA 57.916 32.000 0.00 0.00 0.00 4.35
3360 14742 9.739276 ACCTGTTGATCTTATACAAATGAAGAA 57.261 29.630 0.00 0.00 33.15 2.52
3385 14767 5.682943 TTGCATCAGGTAAACACAGTAAC 57.317 39.130 0.00 0.00 0.00 2.50
3389 14771 5.571784 ATCATTGCATCAGGTAAACACAG 57.428 39.130 0.00 0.00 0.00 3.66
3390 14772 7.056006 AGATATCATTGCATCAGGTAAACACA 58.944 34.615 5.32 0.00 0.00 3.72
3402 14784 6.598457 GGCTATCTGTGAAGATATCATTGCAT 59.402 38.462 5.32 0.00 40.97 3.96
3405 14787 6.370994 GGTGGCTATCTGTGAAGATATCATTG 59.629 42.308 5.32 0.00 40.97 2.82
3406 14788 6.043590 TGGTGGCTATCTGTGAAGATATCATT 59.956 38.462 5.32 0.00 40.97 2.57
3407 14789 5.545335 TGGTGGCTATCTGTGAAGATATCAT 59.455 40.000 5.32 0.00 40.97 2.45
3408 14790 4.901250 TGGTGGCTATCTGTGAAGATATCA 59.099 41.667 5.32 0.00 35.05 2.15
3409 14791 5.474578 TGGTGGCTATCTGTGAAGATATC 57.525 43.478 0.00 0.00 31.24 1.63
3410 14792 5.545335 TGATGGTGGCTATCTGTGAAGATAT 59.455 40.000 0.00 0.00 31.24 1.63
3411 14793 4.901250 TGATGGTGGCTATCTGTGAAGATA 59.099 41.667 0.00 0.00 0.00 1.98
3412 14794 3.713248 TGATGGTGGCTATCTGTGAAGAT 59.287 43.478 0.00 0.00 0.00 2.40
3413 14795 3.106827 TGATGGTGGCTATCTGTGAAGA 58.893 45.455 0.00 0.00 0.00 2.87
3414 14796 3.548745 TGATGGTGGCTATCTGTGAAG 57.451 47.619 0.00 0.00 0.00 3.02
3415 14797 3.877559 CTTGATGGTGGCTATCTGTGAA 58.122 45.455 0.00 0.00 0.00 3.18
3416 14798 2.420547 GCTTGATGGTGGCTATCTGTGA 60.421 50.000 0.00 0.00 0.00 3.58
3417 14799 1.945394 GCTTGATGGTGGCTATCTGTG 59.055 52.381 0.00 0.00 0.00 3.66
3418 14800 1.561076 TGCTTGATGGTGGCTATCTGT 59.439 47.619 0.00 0.00 0.00 3.41
3419 14801 2.336945 TGCTTGATGGTGGCTATCTG 57.663 50.000 0.00 0.00 0.00 2.90
3420 14802 3.019564 GTTTGCTTGATGGTGGCTATCT 58.980 45.455 0.00 0.00 0.00 1.98
3421 14803 2.754552 TGTTTGCTTGATGGTGGCTATC 59.245 45.455 0.00 0.00 0.00 2.08
3422 14804 2.493278 GTGTTTGCTTGATGGTGGCTAT 59.507 45.455 0.00 0.00 0.00 2.97
3423 14805 1.885887 GTGTTTGCTTGATGGTGGCTA 59.114 47.619 0.00 0.00 0.00 3.93
3424 14806 0.675633 GTGTTTGCTTGATGGTGGCT 59.324 50.000 0.00 0.00 0.00 4.75
3425 14807 0.388659 TGTGTTTGCTTGATGGTGGC 59.611 50.000 0.00 0.00 0.00 5.01
3426 14808 3.061322 CAATGTGTTTGCTTGATGGTGG 58.939 45.455 0.00 0.00 0.00 4.61
3427 14809 3.061322 CCAATGTGTTTGCTTGATGGTG 58.939 45.455 0.00 0.00 33.73 4.17
3428 14810 2.037511 CCCAATGTGTTTGCTTGATGGT 59.962 45.455 0.00 0.00 33.73 3.55
3429 14811 2.299582 TCCCAATGTGTTTGCTTGATGG 59.700 45.455 0.00 0.00 33.73 3.51
3430 14812 3.663995 TCCCAATGTGTTTGCTTGATG 57.336 42.857 0.00 0.00 33.73 3.07
3431 14813 4.895668 ATTCCCAATGTGTTTGCTTGAT 57.104 36.364 0.00 0.00 33.73 2.57
3432 14814 4.686191 AATTCCCAATGTGTTTGCTTGA 57.314 36.364 0.00 0.00 33.73 3.02
3433 14815 5.540911 AGTAATTCCCAATGTGTTTGCTTG 58.459 37.500 0.00 0.00 33.73 4.01
3434 14816 5.304101 TGAGTAATTCCCAATGTGTTTGCTT 59.696 36.000 0.00 0.00 33.73 3.91
3435 14817 4.832266 TGAGTAATTCCCAATGTGTTTGCT 59.168 37.500 0.00 0.00 33.73 3.91
3436 14818 5.132897 TGAGTAATTCCCAATGTGTTTGC 57.867 39.130 0.00 0.00 33.73 3.68
3437 14819 9.139174 GTTATTGAGTAATTCCCAATGTGTTTG 57.861 33.333 0.00 0.00 33.21 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.