Multiple sequence alignment - TraesCS6D01G345200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G345200 chr6D 100.000 3813 0 0 1 3813 445269302 445265490 0.000000e+00 7042.0
1 TraesCS6D01G345200 chr6D 98.191 1990 35 1 494 2483 445201030 445199042 0.000000e+00 3474.0
2 TraesCS6D01G345200 chr6D 91.675 1958 123 15 495 2451 445344249 445342331 0.000000e+00 2676.0
3 TraesCS6D01G345200 chr6D 98.734 1343 13 3 2474 3813 445194343 445193002 0.000000e+00 2383.0
4 TraesCS6D01G345200 chr6D 93.590 546 32 2 2683 3225 445342334 445341789 0.000000e+00 811.0
5 TraesCS6D01G345200 chr6D 98.833 257 3 0 237 493 33250572 33250828 3.470000e-125 459.0
6 TraesCS6D01G345200 chr6D 98.833 257 3 0 237 493 431064564 431064308 3.470000e-125 459.0
7 TraesCS6D01G345200 chr6D 96.653 239 8 0 1 239 445201262 445201024 7.670000e-107 398.0
8 TraesCS6D01G345200 chr6D 93.913 230 14 0 3212 3441 445338241 445338012 7.840000e-92 348.0
9 TraesCS6D01G345200 chr6D 86.601 306 28 6 3511 3813 445337149 445336854 3.670000e-85 326.0
10 TraesCS6D01G345200 chr6D 87.554 233 28 1 7 238 445344475 445344243 6.280000e-68 268.0
11 TraesCS6D01G345200 chr6A 91.349 1572 107 16 2264 3813 592012084 592010520 0.000000e+00 2122.0
12 TraesCS6D01G345200 chr6A 87.713 879 58 20 494 1357 592014357 592013514 0.000000e+00 979.0
13 TraesCS6D01G345200 chr6A 90.172 407 29 5 1851 2256 592012533 592012137 1.570000e-143 520.0
14 TraesCS6D01G345200 chr6A 91.667 240 7 2 1549 1788 592012761 592012535 1.710000e-83 320.0
15 TraesCS6D01G345200 chr6A 92.727 220 15 1 1349 1568 592013278 592013060 2.210000e-82 316.0
16 TraesCS6D01G345200 chr6A 88.043 92 8 2 3 91 592014456 592014365 5.210000e-19 106.0
17 TraesCS6D01G345200 chr2A 78.507 1112 220 15 1093 2202 15618616 15617522 0.000000e+00 712.0
18 TraesCS6D01G345200 chr2B 77.887 1117 225 16 1093 2205 24684787 24685885 0.000000e+00 675.0
19 TraesCS6D01G345200 chrUn 91.445 339 29 0 1946 2284 79227550 79227212 2.070000e-127 466.0
20 TraesCS6D01G345200 chrUn 86.885 244 24 6 3558 3795 79000471 79000712 2.260000e-67 267.0
21 TraesCS6D01G345200 chrUn 91.228 57 4 1 3438 3494 79000371 79000426 4.080000e-10 76.8
22 TraesCS6D01G345200 chr5D 98.842 259 3 0 237 495 21676804 21677062 2.680000e-126 462.0
23 TraesCS6D01G345200 chr5D 87.681 138 17 0 3673 3810 528148733 528148870 1.100000e-35 161.0
24 TraesCS6D01G345200 chr7D 98.462 260 4 0 237 496 632827760 632827501 3.470000e-125 459.0
25 TraesCS6D01G345200 chr7D 97.665 257 6 0 237 493 577217397 577217653 3.500000e-120 442.0
26 TraesCS6D01G345200 chr3D 97.736 265 5 1 230 493 437673364 437673628 4.490000e-124 455.0
27 TraesCS6D01G345200 chr3D 98.444 257 4 0 237 493 17649907 17649651 1.610000e-123 453.0
28 TraesCS6D01G345200 chr3D 82.270 141 25 0 3668 3808 48854268 48854408 5.170000e-24 122.0
29 TraesCS6D01G345200 chr2D 98.444 257 4 0 237 493 580967716 580967972 1.610000e-123 453.0
30 TraesCS6D01G345200 chr4D 97.701 261 6 0 237 497 485489303 485489043 2.090000e-122 449.0
31 TraesCS6D01G345200 chr3B 75.505 396 82 13 1483 1876 304559179 304558797 3.030000e-41 180.0
32 TraesCS6D01G345200 chr1B 75.414 362 73 14 1483 1841 639385753 639385405 1.100000e-35 161.0
33 TraesCS6D01G345200 chr5B 86.713 143 19 0 3668 3810 643939069 643939211 3.940000e-35 159.0
34 TraesCS6D01G345200 chr5A 86.014 143 20 0 3671 3813 649710536 649710394 1.830000e-33 154.0
35 TraesCS6D01G345200 chr7B 82.069 145 24 2 3667 3809 45434157 45434301 5.170000e-24 122.0
36 TraesCS6D01G345200 chr6B 75.369 203 41 7 2940 3138 387165854 387165657 5.250000e-14 89.8
37 TraesCS6D01G345200 chr7A 76.923 156 28 5 2940 3091 486233000 486233151 8.780000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G345200 chr6D 445265490 445269302 3812 True 7042.000000 7042 100.0000 1 3813 1 chr6D.!!$R3 3812
1 TraesCS6D01G345200 chr6D 445193002 445194343 1341 True 2383.000000 2383 98.7340 2474 3813 1 chr6D.!!$R2 1339
2 TraesCS6D01G345200 chr6D 445199042 445201262 2220 True 1936.000000 3474 97.4220 1 2483 2 chr6D.!!$R4 2482
3 TraesCS6D01G345200 chr6D 445336854 445344475 7621 True 885.800000 2676 90.6666 7 3813 5 chr6D.!!$R5 3806
4 TraesCS6D01G345200 chr6A 592010520 592014456 3936 True 727.166667 2122 90.2785 3 3813 6 chr6A.!!$R1 3810
5 TraesCS6D01G345200 chr2A 15617522 15618616 1094 True 712.000000 712 78.5070 1093 2202 1 chr2A.!!$R1 1109
6 TraesCS6D01G345200 chr2B 24684787 24685885 1098 False 675.000000 675 77.8870 1093 2205 1 chr2B.!!$F1 1112

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
453 457 0.243365 CGCTATAGCTGCTGGGAGAG 59.757 60.0 21.98 4.64 39.32 3.20 F
1200 1225 0.394352 GTGGCCAGGTTGACCATAGG 60.394 60.0 5.11 2.80 38.89 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2024 2610 1.337823 CGTCCTTGTACCTCAGTTGGG 60.338 57.143 0.0 0.0 0.0 4.12 R
2846 3494 3.924686 ACTATCTTCACGCTTTACAACCG 59.075 43.478 0.0 0.0 0.0 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 108 5.683876 TTTGTGGAAGGAACAATTTTGGA 57.316 34.783 0.00 0.00 37.38 3.53
168 172 2.031157 AGGAGCGATTGTTTTTCAACGG 60.031 45.455 0.00 0.00 38.97 4.44
256 260 7.966246 TTTTATAGATTAAAATAGCCCGCGA 57.034 32.000 8.23 0.00 0.00 5.87
257 261 7.966246 TTTATAGATTAAAATAGCCCGCGAA 57.034 32.000 8.23 0.00 0.00 4.70
258 262 7.966246 TTATAGATTAAAATAGCCCGCGAAA 57.034 32.000 8.23 0.00 0.00 3.46
259 263 8.556213 TTATAGATTAAAATAGCCCGCGAAAT 57.444 30.769 8.23 0.00 0.00 2.17
260 264 9.656040 TTATAGATTAAAATAGCCCGCGAAATA 57.344 29.630 8.23 0.00 0.00 1.40
261 265 6.481954 AGATTAAAATAGCCCGCGAAATAG 57.518 37.500 8.23 0.00 0.00 1.73
262 266 4.477302 TTAAAATAGCCCGCGAAATAGC 57.523 40.909 8.23 1.83 0.00 2.97
263 267 1.235724 AAATAGCCCGCGAAATAGCC 58.764 50.000 8.23 0.00 0.00 3.93
264 268 0.949105 AATAGCCCGCGAAATAGCCG 60.949 55.000 8.23 0.00 0.00 5.52
288 292 2.423018 CTGCGCTATAGCTGCCCA 59.577 61.111 27.09 16.58 38.89 5.36
289 293 1.667191 CTGCGCTATAGCTGCCCAG 60.667 63.158 27.09 20.34 38.89 4.45
290 294 2.358003 GCGCTATAGCTGCCCAGG 60.358 66.667 21.98 6.20 39.32 4.45
291 295 2.872388 GCGCTATAGCTGCCCAGGA 61.872 63.158 21.98 0.00 39.32 3.86
292 296 1.291588 CGCTATAGCTGCCCAGGAG 59.708 63.158 21.98 0.00 39.32 3.69
293 297 1.003959 GCTATAGCTGCCCAGGAGC 60.004 63.158 17.75 0.00 38.21 4.70
294 298 1.676384 CTATAGCTGCCCAGGAGCC 59.324 63.158 4.35 0.00 37.12 4.70
295 299 0.835543 CTATAGCTGCCCAGGAGCCT 60.836 60.000 4.35 0.00 37.12 4.58
296 300 0.833834 TATAGCTGCCCAGGAGCCTC 60.834 60.000 4.35 0.00 37.12 4.70
303 307 3.458163 CCAGGAGCCTCGCCGTTA 61.458 66.667 0.00 0.00 0.00 3.18
304 308 2.202756 CAGGAGCCTCGCCGTTAC 60.203 66.667 0.00 0.00 0.00 2.50
305 309 3.823330 AGGAGCCTCGCCGTTACG 61.823 66.667 0.00 0.00 0.00 3.18
307 311 4.493747 GAGCCTCGCCGTTACGCT 62.494 66.667 0.00 0.00 0.00 5.07
308 312 3.117175 GAGCCTCGCCGTTACGCTA 62.117 63.158 0.00 0.00 0.00 4.26
309 313 2.027169 GCCTCGCCGTTACGCTAT 59.973 61.111 0.00 0.00 0.00 2.97
310 314 2.300787 GCCTCGCCGTTACGCTATG 61.301 63.158 0.00 0.00 0.00 2.23
311 315 1.660575 CCTCGCCGTTACGCTATGG 60.661 63.158 0.00 0.00 0.00 2.74
312 316 2.278989 TCGCCGTTACGCTATGGC 60.279 61.111 9.88 9.88 45.01 4.40
313 317 2.279252 CGCCGTTACGCTATGGCT 60.279 61.111 15.99 0.00 46.04 4.75
314 318 2.585869 CGCCGTTACGCTATGGCTG 61.586 63.158 15.99 8.01 46.04 4.85
315 319 2.882366 GCCGTTACGCTATGGCTGC 61.882 63.158 12.12 0.00 45.03 5.25
316 320 1.227263 CCGTTACGCTATGGCTGCT 60.227 57.895 0.00 0.00 36.09 4.24
317 321 1.490693 CCGTTACGCTATGGCTGCTG 61.491 60.000 0.00 0.00 36.09 4.41
318 322 1.643832 GTTACGCTATGGCTGCTGC 59.356 57.895 7.10 7.10 36.09 5.25
328 332 4.543084 GCTGCTGCCGCGAAATCC 62.543 66.667 8.23 0.00 39.65 3.01
329 333 2.821366 CTGCTGCCGCGAAATCCT 60.821 61.111 8.23 0.00 39.65 3.24
330 334 2.817423 CTGCTGCCGCGAAATCCTC 61.817 63.158 8.23 0.00 39.65 3.71
331 335 3.577313 GCTGCCGCGAAATCCTCC 61.577 66.667 8.23 0.00 0.00 4.30
332 336 2.125147 CTGCCGCGAAATCCTCCA 60.125 61.111 8.23 0.00 0.00 3.86
333 337 2.435938 TGCCGCGAAATCCTCCAC 60.436 61.111 8.23 0.00 0.00 4.02
334 338 2.435938 GCCGCGAAATCCTCCACA 60.436 61.111 8.23 0.00 0.00 4.17
335 339 1.819632 GCCGCGAAATCCTCCACAT 60.820 57.895 8.23 0.00 0.00 3.21
336 340 0.531974 GCCGCGAAATCCTCCACATA 60.532 55.000 8.23 0.00 0.00 2.29
337 341 1.878102 GCCGCGAAATCCTCCACATAT 60.878 52.381 8.23 0.00 0.00 1.78
338 342 2.069273 CCGCGAAATCCTCCACATATC 58.931 52.381 8.23 0.00 0.00 1.63
339 343 2.069273 CGCGAAATCCTCCACATATCC 58.931 52.381 0.00 0.00 0.00 2.59
340 344 2.427506 GCGAAATCCTCCACATATCCC 58.572 52.381 0.00 0.00 0.00 3.85
341 345 2.039084 GCGAAATCCTCCACATATCCCT 59.961 50.000 0.00 0.00 0.00 4.20
342 346 3.260884 GCGAAATCCTCCACATATCCCTA 59.739 47.826 0.00 0.00 0.00 3.53
343 347 4.080863 GCGAAATCCTCCACATATCCCTAT 60.081 45.833 0.00 0.00 0.00 2.57
344 348 5.128827 GCGAAATCCTCCACATATCCCTATA 59.871 44.000 0.00 0.00 0.00 1.31
345 349 6.351881 GCGAAATCCTCCACATATCCCTATAA 60.352 42.308 0.00 0.00 0.00 0.98
346 350 7.620880 CGAAATCCTCCACATATCCCTATAAA 58.379 38.462 0.00 0.00 0.00 1.40
347 351 8.267894 CGAAATCCTCCACATATCCCTATAAAT 58.732 37.037 0.00 0.00 0.00 1.40
348 352 9.401058 GAAATCCTCCACATATCCCTATAAATG 57.599 37.037 0.00 0.00 0.00 2.32
349 353 6.891306 TCCTCCACATATCCCTATAAATGG 57.109 41.667 0.00 0.00 31.95 3.16
350 354 5.191722 TCCTCCACATATCCCTATAAATGGC 59.808 44.000 0.00 0.00 31.27 4.40
351 355 5.192522 CCTCCACATATCCCTATAAATGGCT 59.807 44.000 0.00 0.00 31.27 4.75
352 356 6.313519 TCCACATATCCCTATAAATGGCTC 57.686 41.667 0.00 0.00 31.27 4.70
353 357 5.790096 TCCACATATCCCTATAAATGGCTCA 59.210 40.000 0.00 0.00 31.27 4.26
354 358 6.274436 TCCACATATCCCTATAAATGGCTCAA 59.726 38.462 0.00 0.00 31.27 3.02
355 359 6.375455 CCACATATCCCTATAAATGGCTCAAC 59.625 42.308 0.00 0.00 0.00 3.18
356 360 6.942005 CACATATCCCTATAAATGGCTCAACA 59.058 38.462 0.00 0.00 0.00 3.33
357 361 7.448161 CACATATCCCTATAAATGGCTCAACAA 59.552 37.037 0.00 0.00 0.00 2.83
358 362 8.172741 ACATATCCCTATAAATGGCTCAACAAT 58.827 33.333 0.00 0.00 0.00 2.71
359 363 8.680903 CATATCCCTATAAATGGCTCAACAATC 58.319 37.037 0.00 0.00 0.00 2.67
360 364 6.012337 TCCCTATAAATGGCTCAACAATCA 57.988 37.500 0.00 0.00 0.00 2.57
361 365 6.430864 TCCCTATAAATGGCTCAACAATCAA 58.569 36.000 0.00 0.00 0.00 2.57
362 366 6.321181 TCCCTATAAATGGCTCAACAATCAAC 59.679 38.462 0.00 0.00 0.00 3.18
363 367 6.096705 CCCTATAAATGGCTCAACAATCAACA 59.903 38.462 0.00 0.00 0.00 3.33
364 368 7.363705 CCCTATAAATGGCTCAACAATCAACAA 60.364 37.037 0.00 0.00 0.00 2.83
365 369 8.034215 CCTATAAATGGCTCAACAATCAACAAA 58.966 33.333 0.00 0.00 0.00 2.83
366 370 9.590451 CTATAAATGGCTCAACAATCAACAAAT 57.410 29.630 0.00 0.00 0.00 2.32
367 371 6.790285 AAATGGCTCAACAATCAACAAATC 57.210 33.333 0.00 0.00 0.00 2.17
368 372 4.255833 TGGCTCAACAATCAACAAATCC 57.744 40.909 0.00 0.00 0.00 3.01
369 373 3.006752 TGGCTCAACAATCAACAAATCCC 59.993 43.478 0.00 0.00 0.00 3.85
370 374 3.259123 GGCTCAACAATCAACAAATCCCT 59.741 43.478 0.00 0.00 0.00 4.20
371 375 4.488879 GCTCAACAATCAACAAATCCCTC 58.511 43.478 0.00 0.00 0.00 4.30
372 376 4.619160 GCTCAACAATCAACAAATCCCTCC 60.619 45.833 0.00 0.00 0.00 4.30
373 377 4.478203 TCAACAATCAACAAATCCCTCCA 58.522 39.130 0.00 0.00 0.00 3.86
374 378 4.523943 TCAACAATCAACAAATCCCTCCAG 59.476 41.667 0.00 0.00 0.00 3.86
375 379 4.387026 ACAATCAACAAATCCCTCCAGA 57.613 40.909 0.00 0.00 0.00 3.86
376 380 4.739793 ACAATCAACAAATCCCTCCAGAA 58.260 39.130 0.00 0.00 0.00 3.02
377 381 5.336102 ACAATCAACAAATCCCTCCAGAAT 58.664 37.500 0.00 0.00 0.00 2.40
378 382 5.420104 ACAATCAACAAATCCCTCCAGAATC 59.580 40.000 0.00 0.00 0.00 2.52
379 383 4.656100 TCAACAAATCCCTCCAGAATCA 57.344 40.909 0.00 0.00 0.00 2.57
380 384 5.197224 TCAACAAATCCCTCCAGAATCAT 57.803 39.130 0.00 0.00 0.00 2.45
381 385 5.195940 TCAACAAATCCCTCCAGAATCATC 58.804 41.667 0.00 0.00 0.00 2.92
382 386 5.044624 TCAACAAATCCCTCCAGAATCATCT 60.045 40.000 0.00 0.00 35.88 2.90
383 387 5.046288 ACAAATCCCTCCAGAATCATCTC 57.954 43.478 0.00 0.00 32.03 2.75
384 388 4.141298 ACAAATCCCTCCAGAATCATCTCC 60.141 45.833 0.00 0.00 32.03 3.71
385 389 2.109229 TCCCTCCAGAATCATCTCCC 57.891 55.000 0.00 0.00 32.03 4.30
386 390 1.063183 CCCTCCAGAATCATCTCCCC 58.937 60.000 0.00 0.00 32.03 4.81
387 391 1.063183 CCTCCAGAATCATCTCCCCC 58.937 60.000 0.00 0.00 32.03 5.40
388 392 1.696965 CCTCCAGAATCATCTCCCCCA 60.697 57.143 0.00 0.00 32.03 4.96
389 393 1.419387 CTCCAGAATCATCTCCCCCAC 59.581 57.143 0.00 0.00 32.03 4.61
390 394 0.475906 CCAGAATCATCTCCCCCACC 59.524 60.000 0.00 0.00 32.03 4.61
391 395 1.216064 CAGAATCATCTCCCCCACCA 58.784 55.000 0.00 0.00 32.03 4.17
392 396 1.142465 CAGAATCATCTCCCCCACCAG 59.858 57.143 0.00 0.00 32.03 4.00
393 397 1.010046 AGAATCATCTCCCCCACCAGA 59.990 52.381 0.00 0.00 0.00 3.86
394 398 1.846439 GAATCATCTCCCCCACCAGAA 59.154 52.381 0.00 0.00 0.00 3.02
395 399 1.985622 ATCATCTCCCCCACCAGAAA 58.014 50.000 0.00 0.00 0.00 2.52
396 400 1.753903 TCATCTCCCCCACCAGAAAA 58.246 50.000 0.00 0.00 0.00 2.29
397 401 2.069775 TCATCTCCCCCACCAGAAAAA 58.930 47.619 0.00 0.00 0.00 1.94
398 402 2.654385 TCATCTCCCCCACCAGAAAAAT 59.346 45.455 0.00 0.00 0.00 1.82
399 403 3.077391 TCATCTCCCCCACCAGAAAAATT 59.923 43.478 0.00 0.00 0.00 1.82
400 404 3.628832 TCTCCCCCACCAGAAAAATTT 57.371 42.857 0.00 0.00 0.00 1.82
401 405 3.506398 TCTCCCCCACCAGAAAAATTTC 58.494 45.455 0.00 0.00 37.45 2.17
402 406 2.567169 CTCCCCCACCAGAAAAATTTCC 59.433 50.000 2.37 0.00 37.92 3.13
403 407 1.275010 CCCCCACCAGAAAAATTTCCG 59.725 52.381 2.37 0.00 37.92 4.30
404 408 1.337728 CCCCACCAGAAAAATTTCCGC 60.338 52.381 2.37 0.00 37.92 5.54
405 409 1.618343 CCCACCAGAAAAATTTCCGCT 59.382 47.619 2.37 0.00 37.92 5.52
406 410 2.823154 CCCACCAGAAAAATTTCCGCTA 59.177 45.455 2.37 0.00 37.92 4.26
407 411 3.447229 CCCACCAGAAAAATTTCCGCTAT 59.553 43.478 2.37 0.00 37.92 2.97
408 412 4.081697 CCCACCAGAAAAATTTCCGCTATT 60.082 41.667 2.37 0.00 37.92 1.73
409 413 5.478407 CCACCAGAAAAATTTCCGCTATTT 58.522 37.500 2.37 0.00 37.92 1.40
410 414 5.348451 CCACCAGAAAAATTTCCGCTATTTG 59.652 40.000 2.37 0.00 37.92 2.32
411 415 4.929211 ACCAGAAAAATTTCCGCTATTTGC 59.071 37.500 2.37 0.00 37.92 3.68
412 416 4.329801 CCAGAAAAATTTCCGCTATTTGCC 59.670 41.667 2.37 0.00 37.92 4.52
413 417 4.031652 CAGAAAAATTTCCGCTATTTGCCG 59.968 41.667 2.37 0.00 37.92 5.69
414 418 1.921243 AAATTTCCGCTATTTGCCGC 58.079 45.000 0.00 0.00 38.78 6.53
420 424 3.907893 GCTATTTGCCGCGATTGC 58.092 55.556 8.23 2.45 35.15 3.56
421 425 1.658409 GCTATTTGCCGCGATTGCC 60.658 57.895 8.23 0.00 38.08 4.52
422 426 1.008538 CTATTTGCCGCGATTGCCC 60.009 57.895 8.23 0.00 38.08 5.36
423 427 2.715864 CTATTTGCCGCGATTGCCCG 62.716 60.000 8.23 0.00 38.08 6.13
440 444 2.577059 GCTATGGCGGCCGCTATA 59.423 61.111 41.64 41.64 42.29 1.31
442 446 2.577059 TATGGCGGCCGCTATAGC 59.423 61.111 41.59 29.45 42.29 2.97
443 447 1.982395 TATGGCGGCCGCTATAGCT 60.982 57.895 41.59 28.21 42.29 3.32
444 448 2.225791 TATGGCGGCCGCTATAGCTG 62.226 60.000 41.59 16.77 42.29 4.24
449 453 2.358003 GCCGCTATAGCTGCTGGG 60.358 66.667 27.86 19.26 45.80 4.45
450 454 2.872388 GCCGCTATAGCTGCTGGGA 61.872 63.158 27.86 0.00 45.80 4.37
451 455 1.291588 CCGCTATAGCTGCTGGGAG 59.708 63.158 21.98 7.61 39.32 4.30
452 456 1.181741 CCGCTATAGCTGCTGGGAGA 61.182 60.000 21.98 0.00 39.32 3.71
453 457 0.243365 CGCTATAGCTGCTGGGAGAG 59.757 60.000 21.98 4.64 39.32 3.20
454 458 0.607620 GCTATAGCTGCTGGGAGAGG 59.392 60.000 17.75 0.00 38.21 3.69
455 459 0.607620 CTATAGCTGCTGGGAGAGGC 59.392 60.000 13.43 0.00 0.00 4.70
456 460 0.833834 TATAGCTGCTGGGAGAGGCC 60.834 60.000 13.43 0.00 0.00 5.19
471 475 4.454717 GCCGCCGCGAAATCGTTT 62.455 61.111 15.93 0.00 42.22 3.60
472 476 2.276430 CCGCCGCGAAATCGTTTC 60.276 61.111 15.93 0.00 42.22 2.78
473 477 2.736682 CCGCCGCGAAATCGTTTCT 61.737 57.895 15.93 0.00 42.22 2.52
474 478 1.295930 CGCCGCGAAATCGTTTCTC 60.296 57.895 8.23 1.46 42.22 2.87
475 479 1.060465 GCCGCGAAATCGTTTCTCC 59.940 57.895 8.23 1.10 42.22 3.71
476 480 1.713830 CCGCGAAATCGTTTCTCCC 59.286 57.895 8.23 0.00 42.22 4.30
477 481 1.343821 CGCGAAATCGTTTCTCCCG 59.656 57.895 0.00 0.00 42.22 5.14
478 482 1.060465 GCGAAATCGTTTCTCCCGC 59.940 57.895 4.59 0.00 42.22 6.13
479 483 1.343821 CGAAATCGTTTCTCCCGCG 59.656 57.895 0.00 0.00 37.52 6.46
480 484 1.074319 CGAAATCGTTTCTCCCGCGA 61.074 55.000 8.23 0.00 37.52 5.87
481 485 1.287425 GAAATCGTTTCTCCCGCGAT 58.713 50.000 8.23 0.00 45.66 4.58
482 486 3.453559 AATCGTTTCTCCCGCGATT 57.546 47.368 8.23 5.71 46.31 3.34
483 487 3.453559 ATCGTTTCTCCCGCGATTT 57.546 47.368 8.23 0.00 41.78 2.17
484 488 1.734163 ATCGTTTCTCCCGCGATTTT 58.266 45.000 8.23 0.00 41.78 1.82
485 489 2.367030 TCGTTTCTCCCGCGATTTTA 57.633 45.000 8.23 0.00 0.00 1.52
486 490 2.686235 TCGTTTCTCCCGCGATTTTAA 58.314 42.857 8.23 0.00 0.00 1.52
487 491 3.264104 TCGTTTCTCCCGCGATTTTAAT 58.736 40.909 8.23 0.00 0.00 1.40
488 492 3.307782 TCGTTTCTCCCGCGATTTTAATC 59.692 43.478 8.23 0.00 0.00 1.75
489 493 3.308866 CGTTTCTCCCGCGATTTTAATCT 59.691 43.478 8.23 0.00 33.24 2.40
490 494 4.505191 CGTTTCTCCCGCGATTTTAATCTA 59.495 41.667 8.23 0.00 33.24 1.98
491 495 5.176958 CGTTTCTCCCGCGATTTTAATCTAT 59.823 40.000 8.23 0.00 33.24 1.98
492 496 6.363473 GTTTCTCCCGCGATTTTAATCTATG 58.637 40.000 8.23 0.00 33.24 2.23
780 791 4.443725 GCATTCTATCACGACTCATGACTG 59.556 45.833 0.00 0.00 0.00 3.51
837 848 5.243207 TCCATTCGTTTCCTTTTCTACTCC 58.757 41.667 0.00 0.00 0.00 3.85
1003 1027 0.587768 GTGCACAAGGCCAAAAATGC 59.412 50.000 13.17 8.07 43.89 3.56
1200 1225 0.394352 GTGGCCAGGTTGACCATAGG 60.394 60.000 5.11 2.80 38.89 2.57
1235 1260 2.831742 CACCGCCCTCTACGCCTA 60.832 66.667 0.00 0.00 0.00 3.93
1778 2364 4.021719 CCAATTGGAAGATGCTTCTTGTGT 60.022 41.667 20.50 0.00 42.34 3.72
2846 3494 7.334858 AGGATGAAGACTAAAGACCAATTCTC 58.665 38.462 0.00 0.00 31.02 2.87
3271 7482 6.596309 ATCTAACTGTGATCAGAGTGTTCA 57.404 37.500 24.76 10.69 43.76 3.18
3283 7494 3.741344 CAGAGTGTTCAGTAAGGAAACCG 59.259 47.826 0.00 0.00 0.00 4.44
3756 8795 2.040178 GGGGAGATGATAGGTCAACGT 58.960 52.381 0.00 0.00 38.01 3.99
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
236 240 7.201617 GCTATTTCGCGGGCTATTTTAATCTAT 60.202 37.037 6.13 0.00 0.00 1.98
237 241 6.091713 GCTATTTCGCGGGCTATTTTAATCTA 59.908 38.462 6.13 0.00 0.00 1.98
238 242 5.106673 GCTATTTCGCGGGCTATTTTAATCT 60.107 40.000 6.13 0.00 0.00 2.40
239 243 5.086727 GCTATTTCGCGGGCTATTTTAATC 58.913 41.667 6.13 0.00 0.00 1.75
240 244 4.082949 GGCTATTTCGCGGGCTATTTTAAT 60.083 41.667 6.13 0.00 0.00 1.40
241 245 3.251487 GGCTATTTCGCGGGCTATTTTAA 59.749 43.478 6.13 0.00 0.00 1.52
242 246 2.809696 GGCTATTTCGCGGGCTATTTTA 59.190 45.455 6.13 0.00 0.00 1.52
243 247 1.607148 GGCTATTTCGCGGGCTATTTT 59.393 47.619 6.13 0.00 0.00 1.82
244 248 1.235724 GGCTATTTCGCGGGCTATTT 58.764 50.000 6.13 0.00 0.00 1.40
245 249 0.949105 CGGCTATTTCGCGGGCTATT 60.949 55.000 6.13 0.00 0.00 1.73
246 250 1.374252 CGGCTATTTCGCGGGCTAT 60.374 57.895 6.13 0.00 0.00 2.97
247 251 2.028484 CGGCTATTTCGCGGGCTA 59.972 61.111 6.13 0.00 0.00 3.93
254 258 0.710567 CAGCTATCGCGGCTATTTCG 59.289 55.000 6.13 0.00 42.32 3.46
275 279 1.003959 GCTCCTGGGCAGCTATAGC 60.004 63.158 17.33 17.33 42.49 2.97
276 280 0.835543 AGGCTCCTGGGCAGCTATAG 60.836 60.000 7.26 0.00 43.56 1.31
277 281 0.833834 GAGGCTCCTGGGCAGCTATA 60.834 60.000 2.15 0.00 43.56 1.31
278 282 2.040043 AGGCTCCTGGGCAGCTAT 60.040 61.111 7.26 0.00 43.56 2.97
279 283 2.765807 GAGGCTCCTGGGCAGCTA 60.766 66.667 2.15 0.00 43.56 3.32
286 290 3.458163 TAACGGCGAGGCTCCTGG 61.458 66.667 16.62 0.17 0.00 4.45
287 291 2.202756 GTAACGGCGAGGCTCCTG 60.203 66.667 16.62 9.39 0.00 3.86
288 292 3.823330 CGTAACGGCGAGGCTCCT 61.823 66.667 16.62 0.00 0.00 3.69
290 294 2.403671 ATAGCGTAACGGCGAGGCTC 62.404 60.000 16.62 3.87 38.82 4.70
291 295 2.487532 ATAGCGTAACGGCGAGGCT 61.488 57.895 16.62 17.31 40.83 4.58
292 296 2.027169 ATAGCGTAACGGCGAGGC 59.973 61.111 16.62 9.83 38.18 4.70
293 297 1.660575 CCATAGCGTAACGGCGAGG 60.661 63.158 16.62 0.00 38.18 4.63
294 298 2.300787 GCCATAGCGTAACGGCGAG 61.301 63.158 16.62 2.71 38.18 5.03
295 299 2.278989 GCCATAGCGTAACGGCGA 60.279 61.111 16.62 0.00 38.18 5.54
297 301 2.882366 GCAGCCATAGCGTAACGGC 61.882 63.158 0.00 0.00 46.67 5.68
298 302 1.227263 AGCAGCCATAGCGTAACGG 60.227 57.895 0.00 0.00 46.67 4.44
299 303 1.927210 CAGCAGCCATAGCGTAACG 59.073 57.895 0.00 0.00 46.67 3.18
300 304 1.643832 GCAGCAGCCATAGCGTAAC 59.356 57.895 0.00 0.00 46.67 2.50
301 305 4.124910 GCAGCAGCCATAGCGTAA 57.875 55.556 0.00 0.00 46.67 3.18
311 315 4.543084 GGATTTCGCGGCAGCAGC 62.543 66.667 10.08 7.57 45.49 5.25
312 316 2.817423 GAGGATTTCGCGGCAGCAG 61.817 63.158 10.08 1.86 45.49 4.24
313 317 2.819595 GAGGATTTCGCGGCAGCA 60.820 61.111 10.08 0.00 45.49 4.41
314 318 3.577313 GGAGGATTTCGCGGCAGC 61.577 66.667 6.13 0.00 40.74 5.25
315 319 2.125147 TGGAGGATTTCGCGGCAG 60.125 61.111 6.13 0.00 0.00 4.85
316 320 2.435938 GTGGAGGATTTCGCGGCA 60.436 61.111 6.13 0.00 0.00 5.69
317 321 0.531974 TATGTGGAGGATTTCGCGGC 60.532 55.000 6.13 0.00 0.00 6.53
318 322 2.069273 GATATGTGGAGGATTTCGCGG 58.931 52.381 6.13 0.00 0.00 6.46
319 323 2.069273 GGATATGTGGAGGATTTCGCG 58.931 52.381 0.00 0.00 0.00 5.87
320 324 2.039084 AGGGATATGTGGAGGATTTCGC 59.961 50.000 0.00 0.00 0.00 4.70
321 325 5.683876 ATAGGGATATGTGGAGGATTTCG 57.316 43.478 0.00 0.00 0.00 3.46
322 326 9.401058 CATTTATAGGGATATGTGGAGGATTTC 57.599 37.037 0.00 0.00 0.00 2.17
323 327 8.339247 CCATTTATAGGGATATGTGGAGGATTT 58.661 37.037 0.00 0.00 29.79 2.17
324 328 7.586181 GCCATTTATAGGGATATGTGGAGGATT 60.586 40.741 0.00 0.00 29.79 3.01
325 329 6.126361 GCCATTTATAGGGATATGTGGAGGAT 60.126 42.308 0.00 0.00 29.79 3.24
326 330 5.191722 GCCATTTATAGGGATATGTGGAGGA 59.808 44.000 0.00 0.00 29.79 3.71
327 331 5.192522 AGCCATTTATAGGGATATGTGGAGG 59.807 44.000 0.00 0.00 29.79 4.30
328 332 6.070021 TGAGCCATTTATAGGGATATGTGGAG 60.070 42.308 0.00 0.00 29.79 3.86
329 333 5.790096 TGAGCCATTTATAGGGATATGTGGA 59.210 40.000 0.00 0.00 29.79 4.02
330 334 6.065976 TGAGCCATTTATAGGGATATGTGG 57.934 41.667 0.00 0.00 0.00 4.17
331 335 6.942005 TGTTGAGCCATTTATAGGGATATGTG 59.058 38.462 0.00 0.00 0.00 3.21
332 336 7.090319 TGTTGAGCCATTTATAGGGATATGT 57.910 36.000 0.00 0.00 0.00 2.29
333 337 8.585471 ATTGTTGAGCCATTTATAGGGATATG 57.415 34.615 0.00 0.00 0.00 1.78
334 338 8.393259 TGATTGTTGAGCCATTTATAGGGATAT 58.607 33.333 0.00 0.00 0.00 1.63
335 339 7.754624 TGATTGTTGAGCCATTTATAGGGATA 58.245 34.615 0.00 0.00 0.00 2.59
336 340 6.613699 TGATTGTTGAGCCATTTATAGGGAT 58.386 36.000 0.00 0.00 0.00 3.85
337 341 6.012337 TGATTGTTGAGCCATTTATAGGGA 57.988 37.500 0.00 0.00 0.00 4.20
338 342 6.096705 TGTTGATTGTTGAGCCATTTATAGGG 59.903 38.462 0.00 0.00 0.00 3.53
339 343 7.099266 TGTTGATTGTTGAGCCATTTATAGG 57.901 36.000 0.00 0.00 0.00 2.57
340 344 8.984891 TTTGTTGATTGTTGAGCCATTTATAG 57.015 30.769 0.00 0.00 0.00 1.31
341 345 9.585099 GATTTGTTGATTGTTGAGCCATTTATA 57.415 29.630 0.00 0.00 0.00 0.98
342 346 7.550196 GGATTTGTTGATTGTTGAGCCATTTAT 59.450 33.333 0.00 0.00 0.00 1.40
343 347 6.873076 GGATTTGTTGATTGTTGAGCCATTTA 59.127 34.615 0.00 0.00 0.00 1.40
344 348 5.702209 GGATTTGTTGATTGTTGAGCCATTT 59.298 36.000 0.00 0.00 0.00 2.32
345 349 5.240121 GGATTTGTTGATTGTTGAGCCATT 58.760 37.500 0.00 0.00 0.00 3.16
346 350 4.322953 GGGATTTGTTGATTGTTGAGCCAT 60.323 41.667 0.00 0.00 0.00 4.40
347 351 3.006752 GGGATTTGTTGATTGTTGAGCCA 59.993 43.478 0.00 0.00 0.00 4.75
348 352 3.259123 AGGGATTTGTTGATTGTTGAGCC 59.741 43.478 0.00 0.00 0.00 4.70
349 353 4.488879 GAGGGATTTGTTGATTGTTGAGC 58.511 43.478 0.00 0.00 0.00 4.26
350 354 4.523943 TGGAGGGATTTGTTGATTGTTGAG 59.476 41.667 0.00 0.00 0.00 3.02
351 355 4.478203 TGGAGGGATTTGTTGATTGTTGA 58.522 39.130 0.00 0.00 0.00 3.18
352 356 4.523943 TCTGGAGGGATTTGTTGATTGTTG 59.476 41.667 0.00 0.00 0.00 3.33
353 357 4.739793 TCTGGAGGGATTTGTTGATTGTT 58.260 39.130 0.00 0.00 0.00 2.83
354 358 4.387026 TCTGGAGGGATTTGTTGATTGT 57.613 40.909 0.00 0.00 0.00 2.71
355 359 5.419788 TGATTCTGGAGGGATTTGTTGATTG 59.580 40.000 0.00 0.00 0.00 2.67
356 360 5.582953 TGATTCTGGAGGGATTTGTTGATT 58.417 37.500 0.00 0.00 0.00 2.57
357 361 5.197224 TGATTCTGGAGGGATTTGTTGAT 57.803 39.130 0.00 0.00 0.00 2.57
358 362 4.656100 TGATTCTGGAGGGATTTGTTGA 57.344 40.909 0.00 0.00 0.00 3.18
359 363 5.198965 AGATGATTCTGGAGGGATTTGTTG 58.801 41.667 0.00 0.00 0.00 3.33
360 364 5.444176 GAGATGATTCTGGAGGGATTTGTT 58.556 41.667 0.00 0.00 30.30 2.83
361 365 4.141298 GGAGATGATTCTGGAGGGATTTGT 60.141 45.833 0.00 0.00 30.30 2.83
362 366 4.396522 GGAGATGATTCTGGAGGGATTTG 58.603 47.826 0.00 0.00 30.30 2.32
363 367 3.397282 GGGAGATGATTCTGGAGGGATTT 59.603 47.826 0.00 0.00 30.30 2.17
364 368 2.985311 GGGAGATGATTCTGGAGGGATT 59.015 50.000 0.00 0.00 30.30 3.01
365 369 2.630232 GGGAGATGATTCTGGAGGGAT 58.370 52.381 0.00 0.00 30.30 3.85
366 370 1.415126 GGGGAGATGATTCTGGAGGGA 60.415 57.143 0.00 0.00 30.30 4.20
367 371 1.063183 GGGGAGATGATTCTGGAGGG 58.937 60.000 0.00 0.00 30.30 4.30
368 372 1.063183 GGGGGAGATGATTCTGGAGG 58.937 60.000 0.00 0.00 30.30 4.30
369 373 1.419387 GTGGGGGAGATGATTCTGGAG 59.581 57.143 0.00 0.00 30.30 3.86
370 374 1.511613 GTGGGGGAGATGATTCTGGA 58.488 55.000 0.00 0.00 30.30 3.86
371 375 0.475906 GGTGGGGGAGATGATTCTGG 59.524 60.000 0.00 0.00 30.30 3.86
372 376 1.142465 CTGGTGGGGGAGATGATTCTG 59.858 57.143 0.00 0.00 30.30 3.02
373 377 1.010046 TCTGGTGGGGGAGATGATTCT 59.990 52.381 0.00 0.00 33.88 2.40
374 378 1.511613 TCTGGTGGGGGAGATGATTC 58.488 55.000 0.00 0.00 0.00 2.52
375 379 1.985622 TTCTGGTGGGGGAGATGATT 58.014 50.000 0.00 0.00 0.00 2.57
376 380 1.985622 TTTCTGGTGGGGGAGATGAT 58.014 50.000 0.00 0.00 0.00 2.45
377 381 1.753903 TTTTCTGGTGGGGGAGATGA 58.246 50.000 0.00 0.00 0.00 2.92
378 382 2.603075 TTTTTCTGGTGGGGGAGATG 57.397 50.000 0.00 0.00 0.00 2.90
379 383 3.852858 AATTTTTCTGGTGGGGGAGAT 57.147 42.857 0.00 0.00 0.00 2.75
380 384 3.506398 GAAATTTTTCTGGTGGGGGAGA 58.494 45.455 0.00 0.00 34.41 3.71
381 385 2.567169 GGAAATTTTTCTGGTGGGGGAG 59.433 50.000 3.28 0.00 37.35 4.30
382 386 2.615391 GGAAATTTTTCTGGTGGGGGA 58.385 47.619 3.28 0.00 37.35 4.81
383 387 1.275010 CGGAAATTTTTCTGGTGGGGG 59.725 52.381 4.28 0.00 39.36 5.40
384 388 1.337728 GCGGAAATTTTTCTGGTGGGG 60.338 52.381 12.51 0.00 42.46 4.96
385 389 2.078849 GCGGAAATTTTTCTGGTGGG 57.921 50.000 12.51 0.00 42.46 4.61
389 393 5.454736 GCAAATAGCGGAAATTTTTCTGG 57.545 39.130 12.51 3.14 42.46 3.86
403 407 1.658409 GGCAATCGCGGCAAATAGC 60.658 57.895 6.13 0.96 39.92 2.97
404 408 1.008538 GGGCAATCGCGGCAAATAG 60.009 57.895 6.13 0.00 39.92 1.73
405 409 2.829206 CGGGCAATCGCGGCAAATA 61.829 57.895 6.13 0.00 43.76 1.40
406 410 4.191950 CGGGCAATCGCGGCAAAT 62.192 61.111 6.13 0.00 43.76 2.32
423 427 1.519455 CTATAGCGGCCGCCATAGC 60.519 63.158 39.53 19.64 43.17 2.97
424 428 1.519455 GCTATAGCGGCCGCCATAG 60.519 63.158 42.63 42.63 42.74 2.23
425 429 2.577059 GCTATAGCGGCCGCCATA 59.423 61.111 44.47 37.39 43.17 2.74
435 439 0.607620 CCTCTCCCAGCAGCTATAGC 59.392 60.000 17.33 17.33 42.49 2.97
436 440 0.607620 GCCTCTCCCAGCAGCTATAG 59.392 60.000 0.00 0.00 0.00 1.31
437 441 0.833834 GGCCTCTCCCAGCAGCTATA 60.834 60.000 0.00 0.00 0.00 1.31
438 442 2.146061 GGCCTCTCCCAGCAGCTAT 61.146 63.158 0.00 0.00 0.00 2.97
439 443 2.765807 GGCCTCTCCCAGCAGCTA 60.766 66.667 0.00 0.00 0.00 3.32
454 458 4.454717 AAACGATTTCGCGGCGGC 62.455 61.111 23.46 6.12 44.43 6.53
455 459 2.276430 GAAACGATTTCGCGGCGG 60.276 61.111 23.46 8.34 44.43 6.13
456 460 1.295930 GAGAAACGATTTCGCGGCG 60.296 57.895 17.70 17.70 44.29 6.46
457 461 1.060465 GGAGAAACGATTTCGCGGC 59.940 57.895 6.13 0.00 44.29 6.53
458 462 1.713830 GGGAGAAACGATTTCGCGG 59.286 57.895 6.13 0.00 44.29 6.46
459 463 1.343821 CGGGAGAAACGATTTCGCG 59.656 57.895 0.00 0.00 44.29 5.87
460 464 1.060465 GCGGGAGAAACGATTTCGC 59.940 57.895 0.00 0.00 44.29 4.70
461 465 1.074319 TCGCGGGAGAAACGATTTCG 61.074 55.000 6.13 0.00 44.29 3.46
462 466 1.287425 ATCGCGGGAGAAACGATTTC 58.713 50.000 6.13 0.00 43.55 2.17
463 467 3.453559 ATCGCGGGAGAAACGATTT 57.546 47.368 6.13 0.00 43.55 2.17
466 470 2.367030 TAAAATCGCGGGAGAAACGA 57.633 45.000 6.13 0.00 40.53 3.85
467 471 3.308866 AGATTAAAATCGCGGGAGAAACG 59.691 43.478 6.13 0.00 40.35 3.60
468 472 4.877323 AGATTAAAATCGCGGGAGAAAC 57.123 40.909 6.13 0.00 40.35 2.78
469 473 6.053005 ACATAGATTAAAATCGCGGGAGAAA 58.947 36.000 6.13 0.00 40.35 2.52
470 474 5.607477 ACATAGATTAAAATCGCGGGAGAA 58.393 37.500 6.13 0.05 40.35 2.87
471 475 5.209818 ACATAGATTAAAATCGCGGGAGA 57.790 39.130 6.13 0.00 40.35 3.71
472 476 5.924475 AACATAGATTAAAATCGCGGGAG 57.076 39.130 6.13 0.00 40.35 4.30
473 477 6.687081 AAAACATAGATTAAAATCGCGGGA 57.313 33.333 6.13 4.03 40.35 5.14
678 689 9.339492 CAACAAACAACATGCAATTTAGTTTTT 57.661 25.926 0.00 0.00 0.00 1.94
780 791 3.879892 GGGAATGAAAGTAGATGCTGACC 59.120 47.826 0.00 0.00 0.00 4.02
837 848 0.868406 GAAAGAGAAGCACACCCACG 59.132 55.000 0.00 0.00 0.00 4.94
1003 1027 3.345808 CGTCACAACCGCACCAGG 61.346 66.667 0.00 0.00 37.30 4.45
1200 1225 3.053291 TTGGCATTGTCGGCGACC 61.053 61.111 34.28 20.71 0.00 4.79
1334 1359 3.097614 GTTGTAGTAGAGGAAGGAGGCA 58.902 50.000 0.00 0.00 0.00 4.75
1797 2383 4.900054 ACTGGTAGGTGTAGAAGAAGTTGT 59.100 41.667 0.00 0.00 0.00 3.32
2024 2610 1.337823 CGTCCTTGTACCTCAGTTGGG 60.338 57.143 0.00 0.00 0.00 4.12
2543 3187 5.764131 TGCGATGTTAAAAAGGTAGGTTTG 58.236 37.500 0.00 0.00 0.00 2.93
2846 3494 3.924686 ACTATCTTCACGCTTTACAACCG 59.075 43.478 0.00 0.00 0.00 4.44
2858 3506 5.403246 CCATAGGCATCGTACTATCTTCAC 58.597 45.833 0.00 0.00 0.00 3.18
3271 7482 2.351706 TTTGCACCGGTTTCCTTACT 57.648 45.000 2.97 0.00 0.00 2.24
3283 7494 4.465040 GAGATCATCTCGATTTTGCACC 57.535 45.455 0.00 0.00 33.35 5.01
3756 8795 2.268762 TGTATTGCACTTGGTGAGCA 57.731 45.000 1.57 0.00 40.35 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.