Multiple sequence alignment - TraesCS6D01G344900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G344900 chr6D 100.000 4194 0 0 1 4194 445161798 445157605 0.000000e+00 7745.0
1 TraesCS6D01G344900 chr6A 87.658 2293 142 62 885 3106 591952622 591950400 0.000000e+00 2536.0
2 TraesCS6D01G344900 chr6A 86.515 964 82 30 3248 4189 591947048 591946111 0.000000e+00 1016.0
3 TraesCS6D01G344900 chr6A 86.364 198 16 7 45 239 591954388 591954199 5.500000e-49 206.0
4 TraesCS6D01G344900 chr6A 95.699 93 4 0 3148 3240 591947326 591947234 2.610000e-32 150.0
5 TraesCS6D01G344900 chr6A 86.598 97 11 2 248 343 591953955 591953860 5.730000e-19 106.0
6 TraesCS6D01G344900 chr6A 100.000 28 0 0 3985 4012 607812927 607812954 8.000000e-03 52.8
7 TraesCS6D01G344900 chr6B 87.883 1403 99 28 1742 3106 670287623 670286254 0.000000e+00 1583.0
8 TraesCS6D01G344900 chr6B 89.367 743 41 15 885 1610 670288347 670287626 0.000000e+00 900.0
9 TraesCS6D01G344900 chr6B 85.354 198 27 2 43 239 670290048 670289852 1.980000e-48 204.0
10 TraesCS6D01G344900 chr6B 82.857 210 32 4 248 455 670289602 670289395 7.160000e-43 185.0
11 TraesCS6D01G344900 chrUn 87.007 685 50 17 2436 3106 163384083 163383424 0.000000e+00 736.0
12 TraesCS6D01G344900 chrUn 86.462 554 39 18 1387 1921 163387661 163387125 3.640000e-160 575.0
13 TraesCS6D01G344900 chrUn 79.958 474 40 35 1907 2374 163384507 163384083 8.820000e-77 298.0
14 TraesCS6D01G344900 chr7A 88.189 127 15 0 2275 2401 519848911 519848785 7.260000e-33 152.0
15 TraesCS6D01G344900 chr7A 85.714 126 17 1 2511 2636 96192423 96192299 9.460000e-27 132.0
16 TraesCS6D01G344900 chr7D 84.921 126 18 1 2511 2636 93685021 93684897 4.400000e-25 126.0
17 TraesCS6D01G344900 chr5A 80.000 165 27 4 3250 3409 436064664 436064827 2.650000e-22 117.0
18 TraesCS6D01G344900 chr1A 78.161 174 29 5 3250 3415 372980140 372979968 7.420000e-18 102.0
19 TraesCS6D01G344900 chr2D 79.333 150 25 6 3501 3649 507460847 507460703 2.670000e-17 100.0
20 TraesCS6D01G344900 chr3A 78.528 163 22 9 3250 3410 598996075 598996226 1.240000e-15 95.3
21 TraesCS6D01G344900 chr5D 77.987 159 25 9 3258 3408 42003224 42003068 1.610000e-14 91.6
22 TraesCS6D01G344900 chr7B 96.875 32 1 0 3981 4012 223665341 223665372 2.000000e-03 54.7
23 TraesCS6D01G344900 chr7B 96.875 32 1 0 3981 4012 358414332 358414363 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G344900 chr6D 445157605 445161798 4193 True 7745.000000 7745 100.000000 1 4194 1 chr6D.!!$R1 4193
1 TraesCS6D01G344900 chr6A 591946111 591954388 8277 True 802.800000 2536 88.566800 45 4189 5 chr6A.!!$R1 4144
2 TraesCS6D01G344900 chr6B 670286254 670290048 3794 True 718.000000 1583 86.365250 43 3106 4 chr6B.!!$R1 3063
3 TraesCS6D01G344900 chrUn 163383424 163387661 4237 True 536.333333 736 84.475667 1387 3106 3 chrUn.!!$R1 1719

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
608 930 0.034670 ATCTCCTGGAGGTTGCAAGC 60.035 55.0 23.00 20.81 36.34 4.01 F
633 977 0.179145 ATTTCTCGTCTGGCGTACGG 60.179 55.0 18.39 0.00 40.68 4.02 F
1130 2310 0.322322 AATTGGCATGCACAGTTGGG 59.678 50.0 21.36 0.00 0.00 4.12 F
1706 2919 0.604511 GGTCGATGGAACGGGTTTGT 60.605 55.0 0.00 0.00 0.00 2.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1699 2909 0.741221 CGCTCCTCTGCTACAAACCC 60.741 60.0 0.0 0.0 0.00 4.11 R
1701 2914 1.362406 GCCGCTCCTCTGCTACAAAC 61.362 60.0 0.0 0.0 0.00 2.93 R
3015 6940 0.723790 CGCTCACAAAGAAAGCAGCG 60.724 55.0 0.0 0.0 43.21 5.18 R
3226 10183 0.685097 CCTTCCCGAGTGTTTCCTCA 59.315 55.0 0.0 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.195001 GTGAGATGAAGATACCTCTGTCC 57.805 47.826 0.00 0.00 0.00 4.02
23 24 4.892934 GTGAGATGAAGATACCTCTGTCCT 59.107 45.833 0.00 0.00 0.00 3.85
25 26 5.596361 TGAGATGAAGATACCTCTGTCCTTC 59.404 44.000 0.00 0.00 36.04 3.46
26 27 5.776358 AGATGAAGATACCTCTGTCCTTCT 58.224 41.667 0.00 0.00 36.27 2.85
27 28 6.916909 AGATGAAGATACCTCTGTCCTTCTA 58.083 40.000 0.00 0.00 36.27 2.10
28 29 7.358263 AGATGAAGATACCTCTGTCCTTCTAA 58.642 38.462 0.00 0.00 36.27 2.10
29 30 8.010105 AGATGAAGATACCTCTGTCCTTCTAAT 58.990 37.037 0.00 0.00 36.27 1.73
30 31 7.979786 TGAAGATACCTCTGTCCTTCTAATT 57.020 36.000 0.00 0.00 36.27 1.40
31 32 9.661954 ATGAAGATACCTCTGTCCTTCTAATTA 57.338 33.333 0.00 0.00 36.27 1.40
32 33 9.661954 TGAAGATACCTCTGTCCTTCTAATTAT 57.338 33.333 0.00 0.00 36.27 1.28
34 35 8.658840 AGATACCTCTGTCCTTCTAATTATCC 57.341 38.462 0.00 0.00 0.00 2.59
35 36 8.461033 AGATACCTCTGTCCTTCTAATTATCCT 58.539 37.037 0.00 0.00 0.00 3.24
36 37 9.756571 GATACCTCTGTCCTTCTAATTATCCTA 57.243 37.037 0.00 0.00 0.00 2.94
37 38 7.842887 ACCTCTGTCCTTCTAATTATCCTAC 57.157 40.000 0.00 0.00 0.00 3.18
38 39 7.363031 ACCTCTGTCCTTCTAATTATCCTACA 58.637 38.462 0.00 0.00 0.00 2.74
39 40 8.013667 ACCTCTGTCCTTCTAATTATCCTACAT 58.986 37.037 0.00 0.00 0.00 2.29
40 41 9.535170 CCTCTGTCCTTCTAATTATCCTACATA 57.465 37.037 0.00 0.00 0.00 2.29
53 54 3.202906 TCCTACATATTTGTTCGCAGGC 58.797 45.455 0.00 0.00 37.28 4.85
59 60 2.153366 ATTTGTTCGCAGGCAAAAGG 57.847 45.000 0.00 0.00 36.70 3.11
61 62 0.383949 TTGTTCGCAGGCAAAAGGAC 59.616 50.000 0.00 0.00 0.00 3.85
64 65 2.084546 GTTCGCAGGCAAAAGGACTAT 58.915 47.619 0.00 0.00 29.10 2.12
66 67 2.083774 TCGCAGGCAAAAGGACTATTG 58.916 47.619 0.00 0.00 29.10 1.90
82 83 7.707104 AGGACTATTGCTGTGTAATAATTTGC 58.293 34.615 0.00 0.00 0.00 3.68
85 86 7.186804 ACTATTGCTGTGTAATAATTTGCGAC 58.813 34.615 0.00 0.00 0.00 5.19
106 107 1.539827 AGCGATTTTGGTAGTTGGTGC 59.460 47.619 0.00 0.00 0.00 5.01
109 110 2.552315 CGATTTTGGTAGTTGGTGCACT 59.448 45.455 17.98 0.00 0.00 4.40
150 151 2.239400 TCCTCGACATGACAACTGAGT 58.761 47.619 0.00 0.00 0.00 3.41
162 163 4.040829 TGACAACTGAGTCATCTGGTTCAT 59.959 41.667 0.00 0.00 43.18 2.57
165 166 4.897509 ACTGAGTCATCTGGTTCATCAA 57.102 40.909 0.00 0.00 0.00 2.57
193 194 6.365789 CCACAAAATGTGCAATTATTCGAGTT 59.634 34.615 4.98 0.00 46.51 3.01
224 225 2.795329 CAATAGTGTTCCCCTGTGCTT 58.205 47.619 0.00 0.00 0.00 3.91
231 232 1.125093 TTCCCCTGTGCTTTCTCCGA 61.125 55.000 0.00 0.00 0.00 4.55
233 234 1.078848 CCCTGTGCTTTCTCCGAGG 60.079 63.158 0.00 0.00 0.00 4.63
234 235 1.544825 CCCTGTGCTTTCTCCGAGGA 61.545 60.000 0.00 0.00 0.00 3.71
235 236 0.390472 CCTGTGCTTTCTCCGAGGAC 60.390 60.000 0.00 0.00 36.19 3.85
236 237 0.605589 CTGTGCTTTCTCCGAGGACT 59.394 55.000 0.00 0.00 36.55 3.85
237 238 0.603569 TGTGCTTTCTCCGAGGACTC 59.396 55.000 0.00 0.00 36.55 3.36
239 240 1.135228 GTGCTTTCTCCGAGGACTCTC 60.135 57.143 0.00 0.00 33.30 3.20
241 242 1.404035 GCTTTCTCCGAGGACTCTCTC 59.596 57.143 0.00 0.00 37.86 3.20
252 495 1.204941 GGACTCTCTCGCTAGCCAAAA 59.795 52.381 9.66 0.00 0.00 2.44
256 499 3.244249 ACTCTCTCGCTAGCCAAAAGTTT 60.244 43.478 9.66 0.00 0.00 2.66
262 505 3.684788 TCGCTAGCCAAAAGTTTGAGATC 59.315 43.478 9.66 0.00 40.55 2.75
274 518 6.428385 AAGTTTGAGATCTAGAAAATGCGG 57.572 37.500 0.00 0.00 0.00 5.69
280 524 4.125703 AGATCTAGAAAATGCGGCTGAAG 58.874 43.478 0.00 0.00 0.00 3.02
321 565 3.444034 GCACCTGATTTTCCTAGGGTTTC 59.556 47.826 9.46 2.14 35.89 2.78
323 567 3.011369 ACCTGATTTTCCTAGGGTTTCCC 59.989 47.826 9.46 0.00 45.90 3.97
335 579 0.604578 GGTTTCCCCTTTAAACCGCC 59.395 55.000 2.26 0.00 44.61 6.13
336 580 1.330234 GTTTCCCCTTTAAACCGCCA 58.670 50.000 0.00 0.00 31.94 5.69
337 581 1.271379 GTTTCCCCTTTAAACCGCCAG 59.729 52.381 0.00 0.00 31.94 4.85
338 582 0.896479 TTCCCCTTTAAACCGCCAGC 60.896 55.000 0.00 0.00 0.00 4.85
339 583 2.696759 CCCCTTTAAACCGCCAGCG 61.697 63.158 4.75 4.75 39.44 5.18
341 585 2.178273 CTTTAAACCGCCAGCGCC 59.822 61.111 2.29 0.00 38.24 6.53
342 586 3.661025 CTTTAAACCGCCAGCGCCG 62.661 63.158 2.29 0.00 38.24 6.46
365 609 1.556564 CTGTCGCATGTACCGGTAAG 58.443 55.000 17.78 10.65 0.00 2.34
373 617 0.899717 TGTACCGGTAAGCCTCCGTT 60.900 55.000 17.78 0.11 45.63 4.44
381 625 0.246635 TAAGCCTCCGTTGACTCTGC 59.753 55.000 0.00 0.00 0.00 4.26
382 626 2.771763 AAGCCTCCGTTGACTCTGCG 62.772 60.000 0.00 0.00 0.00 5.18
387 631 3.414700 CGTTGACTCTGCGGTGGC 61.415 66.667 0.00 0.00 40.52 5.01
406 650 2.030045 GCGAGAGGATGAGGTAACCCT 61.030 57.143 0.00 0.00 46.66 4.34
420 664 1.280457 AACCCTGGATCTGAGTGTCC 58.720 55.000 0.00 0.75 35.02 4.02
425 669 1.821753 CTGGATCTGAGTGTCCGAGTT 59.178 52.381 0.00 0.00 37.32 3.01
436 680 0.450983 GTCCGAGTTCGTGGTAGAGG 59.549 60.000 0.48 0.00 37.74 3.69
437 681 0.325933 TCCGAGTTCGTGGTAGAGGA 59.674 55.000 0.48 0.00 37.74 3.71
456 700 2.554032 GGAACAAGTGGTGAGACAATGG 59.446 50.000 0.00 0.00 0.00 3.16
459 703 0.606401 AAGTGGTGAGACAATGGCGG 60.606 55.000 0.00 0.00 0.00 6.13
460 704 1.302511 GTGGTGAGACAATGGCGGT 60.303 57.895 0.00 0.00 0.00 5.68
465 709 2.360350 AGACAATGGCGGTGGCAG 60.360 61.111 0.00 0.00 42.43 4.85
466 710 4.120331 GACAATGGCGGTGGCAGC 62.120 66.667 6.62 6.62 42.43 5.25
467 711 4.972733 ACAATGGCGGTGGCAGCA 62.973 61.111 17.80 0.00 42.43 4.41
468 712 3.454573 CAATGGCGGTGGCAGCAT 61.455 61.111 17.80 0.00 42.43 3.79
469 713 3.454573 AATGGCGGTGGCAGCATG 61.455 61.111 17.80 2.15 42.43 4.06
470 714 3.942377 AATGGCGGTGGCAGCATGA 62.942 57.895 17.80 0.00 42.43 3.07
471 715 3.942377 ATGGCGGTGGCAGCATGAA 62.942 57.895 17.80 0.00 42.43 2.57
472 716 3.372730 GGCGGTGGCAGCATGAAA 61.373 61.111 17.80 0.00 39.69 2.69
493 737 0.863956 AAAAATCTCCCACCCCACCA 59.136 50.000 0.00 0.00 0.00 4.17
499 743 0.178935 CTCCCACCCCACCATTGTTT 60.179 55.000 0.00 0.00 0.00 2.83
500 744 0.178947 TCCCACCCCACCATTGTTTC 60.179 55.000 0.00 0.00 0.00 2.78
501 745 1.531739 CCCACCCCACCATTGTTTCG 61.532 60.000 0.00 0.00 0.00 3.46
528 850 1.273495 TGAGATGGTCTTCTGGGCTCT 60.273 52.381 0.00 0.00 0.00 4.09
532 854 3.645687 AGATGGTCTTCTGGGCTCTAATC 59.354 47.826 0.00 0.00 0.00 1.75
538 860 1.794714 TCTGGGCTCTAATCCACCTC 58.205 55.000 0.00 0.00 0.00 3.85
573 895 3.624861 CGGGACAAGATGAAGGAAGATTG 59.375 47.826 0.00 0.00 0.00 2.67
577 899 3.245371 ACAAGATGAAGGAAGATTGGGCA 60.245 43.478 0.00 0.00 0.00 5.36
585 907 4.379302 AGGAAGATTGGGCATAGATTCC 57.621 45.455 0.00 0.00 35.93 3.01
587 909 3.496870 GGAAGATTGGGCATAGATTCCGT 60.497 47.826 0.00 0.00 0.00 4.69
596 918 3.583806 GCATAGATTCCGTCATCTCCTG 58.416 50.000 0.00 0.00 35.08 3.86
601 923 0.041238 TTCCGTCATCTCCTGGAGGT 59.959 55.000 23.00 14.35 36.34 3.85
604 926 0.460987 CGTCATCTCCTGGAGGTTGC 60.461 60.000 23.00 10.20 36.34 4.17
608 930 0.034670 ATCTCCTGGAGGTTGCAAGC 60.035 55.000 23.00 20.81 36.34 4.01
610 932 0.251077 CTCCTGGAGGTTGCAAGCTT 60.251 55.000 30.17 15.37 36.78 3.74
611 933 1.003580 CTCCTGGAGGTTGCAAGCTTA 59.996 52.381 30.17 20.87 36.78 3.09
612 934 1.168714 CCTGGAGGTTGCAAGCTTAC 58.831 55.000 30.17 24.72 36.78 2.34
613 935 0.798776 CTGGAGGTTGCAAGCTTACG 59.201 55.000 30.17 17.49 36.78 3.18
614 936 0.394938 TGGAGGTTGCAAGCTTACGA 59.605 50.000 30.17 14.30 36.78 3.43
620 964 3.437049 AGGTTGCAAGCTTACGATTTCTC 59.563 43.478 24.96 0.00 31.69 2.87
633 977 0.179145 ATTTCTCGTCTGGCGTACGG 60.179 55.000 18.39 0.00 40.68 4.02
651 995 1.111277 GGCCTGTGAGTTTTGGTGTT 58.889 50.000 0.00 0.00 0.00 3.32
658 1002 2.956333 GTGAGTTTTGGTGTTAAGGGCT 59.044 45.455 0.00 0.00 0.00 5.19
659 1003 3.383505 GTGAGTTTTGGTGTTAAGGGCTT 59.616 43.478 0.00 0.00 0.00 4.35
665 1009 3.806949 TGGTGTTAAGGGCTTCAGATT 57.193 42.857 0.00 0.00 0.00 2.40
672 1016 6.093633 GTGTTAAGGGCTTCAGATTAATTCGT 59.906 38.462 0.00 0.00 0.00 3.85
673 1017 6.657541 TGTTAAGGGCTTCAGATTAATTCGTT 59.342 34.615 0.00 0.00 0.00 3.85
674 1018 5.819825 AAGGGCTTCAGATTAATTCGTTC 57.180 39.130 0.00 0.00 0.00 3.95
675 1019 5.104259 AGGGCTTCAGATTAATTCGTTCT 57.896 39.130 0.00 0.00 0.00 3.01
676 1020 4.878397 AGGGCTTCAGATTAATTCGTTCTG 59.122 41.667 6.07 6.07 0.00 3.02
678 1022 5.529060 GGGCTTCAGATTAATTCGTTCTGAT 59.471 40.000 12.87 0.00 37.31 2.90
679 1023 6.425504 GGCTTCAGATTAATTCGTTCTGATG 58.574 40.000 12.87 14.64 37.31 3.07
680 1024 6.425504 GCTTCAGATTAATTCGTTCTGATGG 58.574 40.000 19.00 14.07 37.31 3.51
681 1025 6.037610 GCTTCAGATTAATTCGTTCTGATGGT 59.962 38.462 19.00 0.00 37.31 3.55
682 1026 7.224753 GCTTCAGATTAATTCGTTCTGATGGTA 59.775 37.037 19.00 6.95 37.31 3.25
683 1027 8.648557 TTCAGATTAATTCGTTCTGATGGTAG 57.351 34.615 12.87 0.00 37.31 3.18
695 1174 4.378774 TCTGATGGTAGTAGTAGTCGCTC 58.621 47.826 0.00 0.00 0.00 5.03
697 1176 4.520179 TGATGGTAGTAGTAGTCGCTCAA 58.480 43.478 0.00 0.00 0.00 3.02
702 1181 4.097589 GGTAGTAGTAGTCGCTCAATGGTT 59.902 45.833 0.00 0.00 0.00 3.67
706 1185 6.694447 AGTAGTAGTCGCTCAATGGTTTAAA 58.306 36.000 0.00 0.00 0.00 1.52
707 1186 7.156673 AGTAGTAGTCGCTCAATGGTTTAAAA 58.843 34.615 0.00 0.00 0.00 1.52
745 1225 6.384258 TTTGTATGTTTGAGCTGCTTTGTA 57.616 33.333 2.53 0.00 0.00 2.41
746 1226 5.356882 TGTATGTTTGAGCTGCTTTGTAC 57.643 39.130 2.53 1.06 0.00 2.90
748 1228 5.530915 TGTATGTTTGAGCTGCTTTGTACTT 59.469 36.000 2.53 1.86 0.00 2.24
750 1230 5.323371 TGTTTGAGCTGCTTTGTACTTTT 57.677 34.783 2.53 0.00 0.00 2.27
751 1231 5.101628 TGTTTGAGCTGCTTTGTACTTTTG 58.898 37.500 2.53 0.00 0.00 2.44
753 1233 4.981806 TGAGCTGCTTTGTACTTTTGTT 57.018 36.364 2.53 0.00 0.00 2.83
754 1234 4.671377 TGAGCTGCTTTGTACTTTTGTTG 58.329 39.130 2.53 0.00 0.00 3.33
755 1235 4.397730 TGAGCTGCTTTGTACTTTTGTTGA 59.602 37.500 2.53 0.00 0.00 3.18
756 1236 5.105957 TGAGCTGCTTTGTACTTTTGTTGAA 60.106 36.000 2.53 0.00 0.00 2.69
757 1237 5.719173 AGCTGCTTTGTACTTTTGTTGAAA 58.281 33.333 0.00 0.00 0.00 2.69
758 1238 5.576774 AGCTGCTTTGTACTTTTGTTGAAAC 59.423 36.000 0.00 0.00 0.00 2.78
760 1240 6.090763 GCTGCTTTGTACTTTTGTTGAAACTT 59.909 34.615 0.00 0.00 0.00 2.66
762 1242 9.134734 CTGCTTTGTACTTTTGTTGAAACTTTA 57.865 29.630 0.00 0.00 0.00 1.85
786 1266 9.974980 TTATAATGAGTCCAAAACAGTTTTTCC 57.025 29.630 8.65 0.43 32.27 3.13
787 1267 5.930837 ATGAGTCCAAAACAGTTTTTCCA 57.069 34.783 8.65 3.76 32.27 3.53
788 1268 5.323371 TGAGTCCAAAACAGTTTTTCCAG 57.677 39.130 8.65 0.00 32.27 3.86
789 1269 4.159506 TGAGTCCAAAACAGTTTTTCCAGG 59.840 41.667 8.65 7.43 32.27 4.45
790 1270 3.118775 AGTCCAAAACAGTTTTTCCAGGC 60.119 43.478 8.65 4.45 32.27 4.85
791 1271 2.834549 TCCAAAACAGTTTTTCCAGGCA 59.165 40.909 8.65 0.00 32.27 4.75
792 1272 3.261897 TCCAAAACAGTTTTTCCAGGCAA 59.738 39.130 8.65 0.00 32.27 4.52
793 1273 4.006319 CCAAAACAGTTTTTCCAGGCAAA 58.994 39.130 8.65 0.00 32.27 3.68
794 1274 4.094739 CCAAAACAGTTTTTCCAGGCAAAG 59.905 41.667 8.65 0.00 32.27 2.77
795 1275 3.541996 AACAGTTTTTCCAGGCAAAGG 57.458 42.857 0.00 0.00 0.00 3.11
796 1276 1.762370 ACAGTTTTTCCAGGCAAAGGG 59.238 47.619 0.00 0.00 0.00 3.95
799 1279 3.578282 CAGTTTTTCCAGGCAAAGGGTAT 59.422 43.478 0.00 0.00 0.00 2.73
801 1281 1.555967 TTTCCAGGCAAAGGGTATGC 58.444 50.000 0.00 0.00 43.08 3.14
807 1287 3.281332 GCAAAGGGTATGCCTTGGA 57.719 52.632 0.00 0.00 37.85 3.53
809 1289 2.944129 GCAAAGGGTATGCCTTGGATA 58.056 47.619 0.00 0.00 37.85 2.59
810 1290 3.500343 GCAAAGGGTATGCCTTGGATAT 58.500 45.455 0.00 0.00 37.85 1.63
811 1291 4.662278 GCAAAGGGTATGCCTTGGATATA 58.338 43.478 0.00 0.00 37.85 0.86
812 1292 5.264395 GCAAAGGGTATGCCTTGGATATAT 58.736 41.667 0.00 0.00 37.85 0.86
813 1293 5.358160 GCAAAGGGTATGCCTTGGATATATC 59.642 44.000 3.96 3.96 37.85 1.63
814 1294 6.725364 CAAAGGGTATGCCTTGGATATATCT 58.275 40.000 12.42 0.00 34.45 1.98
815 1295 7.583416 GCAAAGGGTATGCCTTGGATATATCTA 60.583 40.741 12.42 3.53 37.85 1.98
817 1297 6.998112 AGGGTATGCCTTGGATATATCTAGA 58.002 40.000 12.42 0.00 34.45 2.43
818 1298 7.609375 AGGGTATGCCTTGGATATATCTAGAT 58.391 38.462 10.73 10.73 34.45 1.98
820 1300 7.291182 GGGTATGCCTTGGATATATCTAGATGT 59.709 40.741 15.79 11.37 34.45 3.06
821 1301 8.147058 GGTATGCCTTGGATATATCTAGATGTG 58.853 40.741 15.79 0.00 0.00 3.21
824 1887 6.956435 TGCCTTGGATATATCTAGATGTGTCT 59.044 38.462 20.39 4.14 38.52 3.41
841 1904 8.083462 GATGTGTCTTAATTATTACGCATCCA 57.917 34.615 25.79 7.00 46.58 3.41
844 1907 7.551262 TGTGTCTTAATTATTACGCATCCAAGT 59.449 33.333 8.93 0.00 0.00 3.16
847 1910 8.062448 GTCTTAATTATTACGCATCCAAGTGAC 58.938 37.037 0.00 0.00 0.00 3.67
850 1913 9.602568 TTAATTATTACGCATCCAAGTGACTTA 57.397 29.630 0.00 0.00 0.00 2.24
852 1915 8.677148 ATTATTACGCATCCAAGTGACTTAAT 57.323 30.769 0.00 0.00 0.00 1.40
858 1921 5.580691 CGCATCCAAGTGACTTAATCAAGTA 59.419 40.000 0.00 0.00 45.18 2.24
859 1922 6.237942 CGCATCCAAGTGACTTAATCAAGTAG 60.238 42.308 0.00 0.00 45.18 2.57
860 1923 6.818644 GCATCCAAGTGACTTAATCAAGTAGA 59.181 38.462 0.00 0.00 45.18 2.59
861 1924 7.334421 GCATCCAAGTGACTTAATCAAGTAGAA 59.666 37.037 0.00 0.00 45.18 2.10
863 1926 9.793259 ATCCAAGTGACTTAATCAAGTAGAAAA 57.207 29.630 0.00 0.00 45.18 2.29
864 1927 9.052759 TCCAAGTGACTTAATCAAGTAGAAAAC 57.947 33.333 0.00 0.00 45.18 2.43
865 1928 8.009974 CCAAGTGACTTAATCAAGTAGAAAACG 58.990 37.037 0.00 0.00 45.18 3.60
867 1930 8.882415 AGTGACTTAATCAAGTAGAAAACGAA 57.118 30.769 0.00 0.00 45.18 3.85
868 1931 9.321562 AGTGACTTAATCAAGTAGAAAACGAAA 57.678 29.630 0.00 0.00 45.18 3.46
869 1932 9.925268 GTGACTTAATCAAGTAGAAAACGAAAA 57.075 29.630 0.00 0.00 45.18 2.29
918 2076 1.408969 AGGCTAGGCTTAGACAGAGC 58.591 55.000 14.10 3.69 37.39 4.09
920 2078 0.741915 GCTAGGCTTAGACAGAGCGT 59.258 55.000 7.11 0.00 41.03 5.07
932 2090 0.816825 CAGAGCGTATGGCAGCCATT 60.817 55.000 32.20 14.49 42.23 3.16
935 2093 0.816825 AGCGTATGGCAGCCATTCAG 60.817 55.000 32.20 22.31 42.23 3.02
965 2123 1.802880 GCATATATAGCCACGGAGCCG 60.803 57.143 7.48 7.48 46.03 5.52
996 2155 0.400594 AGGTTTGTCCTAGCACCACC 59.599 55.000 0.00 0.00 46.10 4.61
997 2156 0.400594 GGTTTGTCCTAGCACCACCT 59.599 55.000 0.00 0.00 0.00 4.00
1130 2310 0.322322 AATTGGCATGCACAGTTGGG 59.678 50.000 21.36 0.00 0.00 4.12
1169 2349 2.125225 GACCCCCTCCTCCAACCT 59.875 66.667 0.00 0.00 0.00 3.50
1294 2478 4.336713 GGAGGCTTTCCACATACAATTCTC 59.663 45.833 0.00 0.00 46.01 2.87
1295 2479 5.184892 AGGCTTTCCACATACAATTCTCT 57.815 39.130 0.00 0.00 33.74 3.10
1298 2482 5.189180 GCTTTCCACATACAATTCTCTCCT 58.811 41.667 0.00 0.00 0.00 3.69
1310 2494 3.993658 TTCTCTCCTAGCCCCTGAATA 57.006 47.619 0.00 0.00 0.00 1.75
1312 2496 5.616975 TTCTCTCCTAGCCCCTGAATATA 57.383 43.478 0.00 0.00 0.00 0.86
1313 2497 5.822774 TCTCTCCTAGCCCCTGAATATAT 57.177 43.478 0.00 0.00 0.00 0.86
1314 2498 5.772004 TCTCTCCTAGCCCCTGAATATATC 58.228 45.833 0.00 0.00 0.00 1.63
1421 2631 0.606096 TACAGATCACGTGGTGGTGG 59.394 55.000 17.00 3.63 38.46 4.61
1422 2632 2.034879 CAGATCACGTGGTGGTGGC 61.035 63.158 17.00 0.00 38.46 5.01
1423 2633 3.118454 GATCACGTGGTGGTGGCG 61.118 66.667 17.00 0.00 38.46 5.69
1550 2760 4.424711 ATGGGCGTGTTCGGGCAT 62.425 61.111 0.00 0.00 37.56 4.40
1600 2810 7.392393 AGGTTTTGCGAAGGTAATAACAACTAT 59.608 33.333 0.00 0.00 0.00 2.12
1601 2811 8.667463 GGTTTTGCGAAGGTAATAACAACTATA 58.333 33.333 0.00 0.00 0.00 1.31
1620 2830 6.763355 ACTATAGTAGAAGCCATGGATTGTG 58.237 40.000 22.29 5.51 0.00 3.33
1630 2840 3.758425 CCATGGATTGTGCATCATCCTA 58.242 45.455 21.66 12.33 32.79 2.94
1695 2905 1.019278 CGTTTCCTGTGGGTCGATGG 61.019 60.000 0.00 0.00 0.00 3.51
1699 2909 1.447838 CCTGTGGGTCGATGGAACG 60.448 63.158 0.00 0.00 0.00 3.95
1701 2914 2.125269 GTGGGTCGATGGAACGGG 60.125 66.667 0.00 0.00 0.00 5.28
1706 2919 0.604511 GGTCGATGGAACGGGTTTGT 60.605 55.000 0.00 0.00 0.00 2.83
1863 3091 7.889873 TCTTACCCTTTTTGAATTCACTTCA 57.110 32.000 7.89 0.00 42.15 3.02
1868 3096 6.762661 ACCCTTTTTGAATTCACTTCATGTTG 59.237 34.615 7.89 0.00 43.30 3.33
1888 3116 5.296780 TGTTGTGTCAAGAACTCAAGATTCC 59.703 40.000 0.00 0.00 40.86 3.01
1929 3157 2.430694 AGACCCCTGTTTGCTGAAAAAC 59.569 45.455 0.00 0.00 39.90 2.43
1943 5803 3.791245 TGAAAAACTGGTTGGATTGTGC 58.209 40.909 0.00 0.00 0.00 4.57
1946 5806 4.420522 AAAACTGGTTGGATTGTGCAAT 57.579 36.364 0.00 0.00 28.47 3.56
2022 5882 6.014669 AGCCAAATTACTTTTGTGCAGGAATA 60.015 34.615 0.00 0.00 42.68 1.75
2025 5885 9.868277 CCAAATTACTTTTGTGCAGGAATATAA 57.132 29.630 0.00 0.00 42.68 0.98
2044 5904 3.559238 AACTTCATGTGGCATCGTTTC 57.441 42.857 0.00 0.00 0.00 2.78
2060 5922 6.593978 CATCGTTTCGTTTTCAGAGAGAAAT 58.406 36.000 0.00 0.00 45.15 2.17
2063 5925 7.469260 TCGTTTCGTTTTCAGAGAGAAATTTT 58.531 30.769 0.00 0.00 45.15 1.82
2083 5945 6.723471 TTTTAGTACTTATTTGGGGAGGGT 57.277 37.500 0.00 0.00 0.00 4.34
2089 5954 1.231018 TATTTGGGGAGGGTGGGATG 58.769 55.000 0.00 0.00 0.00 3.51
2126 5991 3.946606 TGATGAGTGAGTTCATGCATGT 58.053 40.909 25.43 7.32 37.90 3.21
2127 5992 5.088680 TGATGAGTGAGTTCATGCATGTA 57.911 39.130 25.43 14.44 37.90 2.29
2128 5993 5.114081 TGATGAGTGAGTTCATGCATGTAG 58.886 41.667 25.43 0.94 37.90 2.74
2129 5994 4.806640 TGAGTGAGTTCATGCATGTAGA 57.193 40.909 25.43 10.81 0.00 2.59
2130 5995 5.349061 TGAGTGAGTTCATGCATGTAGAT 57.651 39.130 25.43 10.85 0.00 1.98
2131 5996 5.114081 TGAGTGAGTTCATGCATGTAGATG 58.886 41.667 25.43 0.97 0.00 2.90
2132 5997 5.095145 AGTGAGTTCATGCATGTAGATGT 57.905 39.130 25.43 6.52 31.50 3.06
2157 6022 5.128991 AGTCATGATGTCACTCACTGATCAT 59.871 40.000 0.00 0.00 31.34 2.45
2286 6168 6.359804 TGGCTCTGTATTTGATTCTGCTAAT 58.640 36.000 0.00 0.00 0.00 1.73
2287 6169 7.508687 TGGCTCTGTATTTGATTCTGCTAATA 58.491 34.615 0.00 0.00 0.00 0.98
2289 6171 9.658799 GGCTCTGTATTTGATTCTGCTAATATA 57.341 33.333 0.00 0.00 0.00 0.86
2295 6177 9.360093 GTATTTGATTCTGCTAATATACGAGCT 57.640 33.333 8.70 0.00 39.54 4.09
2296 6178 8.839310 ATTTGATTCTGCTAATATACGAGCTT 57.161 30.769 8.70 0.00 39.54 3.74
2297 6179 7.643528 TTGATTCTGCTAATATACGAGCTTG 57.356 36.000 0.00 0.00 39.54 4.01
2298 6180 6.981722 TGATTCTGCTAATATACGAGCTTGA 58.018 36.000 8.31 5.16 39.54 3.02
2299 6181 7.433680 TGATTCTGCTAATATACGAGCTTGAA 58.566 34.615 8.31 11.56 39.54 2.69
2300 6182 7.596621 TGATTCTGCTAATATACGAGCTTGAAG 59.403 37.037 8.31 0.00 39.54 3.02
2301 6183 5.773575 TCTGCTAATATACGAGCTTGAAGG 58.226 41.667 8.31 0.00 39.54 3.46
2302 6184 5.535030 TCTGCTAATATACGAGCTTGAAGGA 59.465 40.000 8.31 0.00 39.54 3.36
2303 6185 6.040504 TCTGCTAATATACGAGCTTGAAGGAA 59.959 38.462 8.31 0.00 39.54 3.36
2304 6186 6.578944 TGCTAATATACGAGCTTGAAGGAAA 58.421 36.000 8.31 0.00 39.54 3.13
2305 6187 6.701841 TGCTAATATACGAGCTTGAAGGAAAG 59.298 38.462 8.31 0.00 39.54 2.62
2306 6188 6.702282 GCTAATATACGAGCTTGAAGGAAAGT 59.298 38.462 8.31 0.00 35.73 2.66
2677 6571 4.373116 TCGCCGACCACCAGCTTC 62.373 66.667 0.00 0.00 0.00 3.86
2692 6586 1.625616 GCTTCTCTAGCGTGCGTTAA 58.374 50.000 0.00 0.00 40.71 2.01
2752 6646 3.285215 CCAGCTGATCATGGCGCC 61.285 66.667 22.73 22.73 0.00 6.53
2815 6709 1.097547 CATGGGATCCCTTGTGTCGC 61.098 60.000 30.26 5.35 36.75 5.19
2857 6772 4.039357 GGTGCACTGCTGCTGCTG 62.039 66.667 17.98 18.66 44.57 4.41
2862 6777 4.368391 ACTGCTGCTGCTGTGTAC 57.632 55.556 23.71 0.00 46.96 2.90
2863 6778 1.665916 ACTGCTGCTGCTGTGTACG 60.666 57.895 23.71 4.37 46.96 3.67
2864 6779 2.357396 TGCTGCTGCTGTGTACGG 60.357 61.111 17.00 0.00 40.48 4.02
2980 6895 4.814294 GGACCGCACCTAGCCGTG 62.814 72.222 0.00 0.00 41.38 4.94
3044 6969 5.957842 TTCTTTGTGAGCGTTGGATTAAT 57.042 34.783 0.00 0.00 0.00 1.40
3052 6977 8.270080 TGTGAGCGTTGGATTAATAATTTACA 57.730 30.769 0.00 0.00 0.00 2.41
3056 6981 8.288689 AGCGTTGGATTAATAATTTACAACCT 57.711 30.769 16.17 13.11 34.78 3.50
3072 6997 0.886490 ACCTAGTTGCACTGTGCTGC 60.886 55.000 30.43 22.35 45.31 5.25
3106 7031 7.664552 TCTGCTCCATCATTTCCAAAATATT 57.335 32.000 0.00 0.00 0.00 1.28
3107 7032 8.081517 TCTGCTCCATCATTTCCAAAATATTT 57.918 30.769 0.00 0.00 0.00 1.40
3109 8109 7.849160 TGCTCCATCATTTCCAAAATATTTCA 58.151 30.769 0.10 0.00 0.00 2.69
3111 8111 7.225341 GCTCCATCATTTCCAAAATATTTCACC 59.775 37.037 0.10 0.00 0.00 4.02
3116 8116 7.839907 TCATTTCCAAAATATTTCACCTGAGG 58.160 34.615 0.10 0.00 0.00 3.86
3117 8117 7.673504 TCATTTCCAAAATATTTCACCTGAGGA 59.326 33.333 4.99 0.00 0.00 3.71
3128 8128 4.908601 TCACCTGAGGATTTCTTAGCAA 57.091 40.909 4.99 0.00 0.00 3.91
3138 8138 5.817988 GGATTTCTTAGCAATCCCGTTAAC 58.182 41.667 11.69 0.00 42.82 2.01
3139 8139 5.355910 GGATTTCTTAGCAATCCCGTTAACA 59.644 40.000 11.69 0.00 42.82 2.41
3140 8140 6.127842 GGATTTCTTAGCAATCCCGTTAACAA 60.128 38.462 11.69 0.00 42.82 2.83
3141 8141 6.827586 TTTCTTAGCAATCCCGTTAACAAT 57.172 33.333 6.39 0.00 0.00 2.71
3142 8142 7.925043 TTTCTTAGCAATCCCGTTAACAATA 57.075 32.000 6.39 0.00 0.00 1.90
3143 8143 6.913873 TCTTAGCAATCCCGTTAACAATAC 57.086 37.500 6.39 0.00 0.00 1.89
3144 8144 5.818857 TCTTAGCAATCCCGTTAACAATACC 59.181 40.000 6.39 0.00 0.00 2.73
3146 8146 4.532834 AGCAATCCCGTTAACAATACCAT 58.467 39.130 6.39 0.00 0.00 3.55
3197 10154 3.604772 GCACTAAGTCAAAGTTGAGTGCG 60.605 47.826 15.84 7.74 42.03 5.34
3201 10158 2.906354 AGTCAAAGTTGAGTGCGTTCT 58.094 42.857 0.53 0.00 39.29 3.01
3209 10166 4.377021 AGTTGAGTGCGTTCTTTCACATA 58.623 39.130 0.00 0.00 35.76 2.29
3240 10197 0.671781 CCAGCTGAGGAAACACTCGG 60.672 60.000 17.39 0.00 44.83 4.63
3242 10199 0.832135 AGCTGAGGAAACACTCGGGA 60.832 55.000 0.00 0.00 42.78 5.14
3243 10200 0.034896 GCTGAGGAAACACTCGGGAA 59.965 55.000 0.00 0.00 42.78 3.97
3244 10201 1.941668 GCTGAGGAAACACTCGGGAAG 60.942 57.143 0.00 0.00 42.78 3.46
3246 10203 0.673956 GAGGAAACACTCGGGAAGGC 60.674 60.000 0.00 0.00 0.00 4.35
3274 10409 2.002586 CGATACAACCAGCTGAACCAG 58.997 52.381 17.39 0.00 34.12 4.00
3298 10433 5.276678 GCGCGCTTTAGTGATTATAAGACAA 60.277 40.000 26.67 0.00 0.00 3.18
3321 10456 7.773690 ACAACACAAACTATTAAGAACCTCAGT 59.226 33.333 0.00 0.00 0.00 3.41
3323 10458 9.490379 AACACAAACTATTAAGAACCTCAGTAG 57.510 33.333 0.00 0.00 0.00 2.57
3340 10475 5.997385 TCAGTAGAACTTCGCAAAATTTCC 58.003 37.500 0.00 0.00 0.00 3.13
3348 10483 8.547894 AGAACTTCGCAAAATTTCCAAAATTAC 58.452 29.630 0.00 0.00 0.00 1.89
3349 10484 6.872608 ACTTCGCAAAATTTCCAAAATTACG 58.127 32.000 0.00 4.24 0.00 3.18
3350 10485 6.697892 ACTTCGCAAAATTTCCAAAATTACGA 59.302 30.769 10.89 10.89 0.00 3.43
3351 10486 6.683090 TCGCAAAATTTCCAAAATTACGAG 57.317 33.333 10.89 3.96 0.00 4.18
3352 10487 5.117897 TCGCAAAATTTCCAAAATTACGAGC 59.882 36.000 10.89 7.06 0.00 5.03
3353 10488 5.305036 GCAAAATTTCCAAAATTACGAGCG 58.695 37.500 0.00 0.00 0.00 5.03
3354 10489 5.305036 CAAAATTTCCAAAATTACGAGCGC 58.695 37.500 0.00 0.00 0.00 5.92
3355 10490 3.840890 ATTTCCAAAATTACGAGCGCA 57.159 38.095 11.47 0.00 0.00 6.09
3356 10491 3.627732 TTTCCAAAATTACGAGCGCAA 57.372 38.095 11.47 0.00 0.00 4.85
3357 10492 3.840890 TTCCAAAATTACGAGCGCAAT 57.159 38.095 11.47 0.00 0.00 3.56
3358 10493 3.840890 TCCAAAATTACGAGCGCAATT 57.159 38.095 11.47 3.56 0.00 2.32
3359 10494 4.167554 TCCAAAATTACGAGCGCAATTT 57.832 36.364 11.47 10.30 36.22 1.82
3360 10495 4.551388 TCCAAAATTACGAGCGCAATTTT 58.449 34.783 18.07 18.07 42.28 1.82
3361 10496 4.985409 TCCAAAATTACGAGCGCAATTTTT 59.015 33.333 20.12 10.42 40.56 1.94
3378 10513 3.591196 TTTTTCTATGGCAGCGCAAAT 57.409 38.095 11.47 0.00 0.00 2.32
3379 10514 2.849880 TTTCTATGGCAGCGCAAATC 57.150 45.000 11.47 0.00 0.00 2.17
3451 10601 5.901552 TCTGAAACTGCCGAAGAAAATTTT 58.098 33.333 2.28 2.28 0.00 1.82
3464 10614 7.837446 CCGAAGAAAATTTTAAAACACGAACAC 59.163 33.333 2.75 0.00 0.00 3.32
3588 10742 4.805219 ACGGGAACATTTTATGAAGTTGC 58.195 39.130 0.00 0.00 0.00 4.17
3685 10839 9.617975 TTGAAATTTGTGAACAATTTTTGAACC 57.382 25.926 14.04 5.47 38.64 3.62
3689 10843 4.245660 TGTGAACAATTTTTGAACCGCAA 58.754 34.783 0.00 0.00 33.88 4.85
3690 10844 4.092091 TGTGAACAATTTTTGAACCGCAAC 59.908 37.500 0.00 0.00 35.91 4.17
3781 10935 4.219288 AGCAGGAACATGTTCTGAAATTCC 59.781 41.667 31.81 17.62 39.45 3.01
3788 10942 8.026607 GGAACATGTTCTGAAATTCCGAATAAA 58.973 33.333 31.81 0.00 39.45 1.40
3805 10959 8.267367 TCCGAATAAATTTTTAAAACGTTGTGC 58.733 29.630 0.00 0.00 0.00 4.57
3886 11043 9.160496 AGTACAAGCAATTTTTGAAATGTGAAA 57.840 25.926 6.48 0.00 0.00 2.69
3887 11044 9.209297 GTACAAGCAATTTTTGAAATGTGAAAC 57.791 29.630 6.48 0.00 37.35 2.78
3931 11090 8.999220 AAAATGGACATTTTGCAAACAATTTT 57.001 23.077 19.04 14.11 45.99 1.82
4036 11197 8.099364 TCCTAGACATTTTCAGATGTTTGAAC 57.901 34.615 0.00 0.00 40.21 3.18
4039 11200 9.734620 CTAGACATTTTCAGATGTTTGAACAAA 57.265 29.630 0.10 0.00 43.03 2.83
4182 11344 9.546428 AAAAATAAACAGAAATGGGAAAGAGTG 57.454 29.630 0.00 0.00 0.00 3.51
4189 11351 2.286365 ATGGGAAAGAGTGGCGAAAA 57.714 45.000 0.00 0.00 0.00 2.29
4190 11352 2.060050 TGGGAAAGAGTGGCGAAAAA 57.940 45.000 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.892934 AGGACAGAGGTATCTTCATCTCAC 59.107 45.833 0.00 0.00 31.64 3.51
4 5 7.589958 TTAGAAGGACAGAGGTATCTTCATC 57.410 40.000 0.00 0.00 38.65 2.92
5 6 8.560124 AATTAGAAGGACAGAGGTATCTTCAT 57.440 34.615 0.00 0.00 38.65 2.57
6 7 7.979786 AATTAGAAGGACAGAGGTATCTTCA 57.020 36.000 0.00 0.00 38.65 3.02
8 9 9.095700 GGATAATTAGAAGGACAGAGGTATCTT 57.904 37.037 0.00 0.00 31.64 2.40
9 10 8.461033 AGGATAATTAGAAGGACAGAGGTATCT 58.539 37.037 0.00 0.00 35.63 1.98
10 11 8.658840 AGGATAATTAGAAGGACAGAGGTATC 57.341 38.462 0.00 0.00 0.00 2.24
11 12 9.536510 GTAGGATAATTAGAAGGACAGAGGTAT 57.463 37.037 0.00 0.00 0.00 2.73
14 15 7.841282 TGTAGGATAATTAGAAGGACAGAGG 57.159 40.000 0.00 0.00 0.00 3.69
26 27 9.214957 CCTGCGAACAAATATGTAGGATAATTA 57.785 33.333 0.00 0.00 39.40 1.40
27 28 7.308589 GCCTGCGAACAAATATGTAGGATAATT 60.309 37.037 0.00 0.00 39.40 1.40
28 29 6.149474 GCCTGCGAACAAATATGTAGGATAAT 59.851 38.462 0.00 0.00 39.40 1.28
29 30 5.468746 GCCTGCGAACAAATATGTAGGATAA 59.531 40.000 0.00 0.00 39.40 1.75
30 31 4.994852 GCCTGCGAACAAATATGTAGGATA 59.005 41.667 0.00 0.00 39.40 2.59
31 32 3.815401 GCCTGCGAACAAATATGTAGGAT 59.185 43.478 0.00 0.00 39.40 3.24
32 33 3.202906 GCCTGCGAACAAATATGTAGGA 58.797 45.455 0.00 0.00 39.40 2.94
33 34 2.942376 TGCCTGCGAACAAATATGTAGG 59.058 45.455 0.00 0.00 39.40 3.18
34 35 4.614555 TTGCCTGCGAACAAATATGTAG 57.385 40.909 0.00 0.00 39.40 2.74
35 36 5.378292 TTTTGCCTGCGAACAAATATGTA 57.622 34.783 0.00 0.00 39.40 2.29
36 37 3.932545 TTTGCCTGCGAACAAATATGT 57.067 38.095 0.00 0.00 43.14 2.29
37 38 3.613737 CCTTTTGCCTGCGAACAAATATG 59.386 43.478 0.00 0.00 35.81 1.78
38 39 3.509575 TCCTTTTGCCTGCGAACAAATAT 59.490 39.130 0.00 0.00 35.81 1.28
39 40 2.887783 TCCTTTTGCCTGCGAACAAATA 59.112 40.909 0.00 0.00 35.81 1.40
40 41 1.686052 TCCTTTTGCCTGCGAACAAAT 59.314 42.857 0.00 0.00 35.81 2.32
41 42 1.107114 TCCTTTTGCCTGCGAACAAA 58.893 45.000 0.00 0.00 34.11 2.83
42 43 0.383949 GTCCTTTTGCCTGCGAACAA 59.616 50.000 0.00 0.00 0.00 2.83
43 44 0.465460 AGTCCTTTTGCCTGCGAACA 60.465 50.000 0.00 0.00 0.00 3.18
51 52 2.558359 ACACAGCAATAGTCCTTTTGCC 59.442 45.455 15.74 2.73 44.76 4.52
59 60 7.373441 GTCGCAAATTATTACACAGCAATAGTC 59.627 37.037 0.00 0.00 0.00 2.59
61 62 7.186128 TGTCGCAAATTATTACACAGCAATAG 58.814 34.615 0.00 0.00 0.00 1.73
64 65 5.363979 TGTCGCAAATTATTACACAGCAA 57.636 34.783 0.00 0.00 0.00 3.91
66 67 3.786048 GCTGTCGCAAATTATTACACAGC 59.214 43.478 5.47 5.47 45.99 4.40
67 68 4.021822 CGCTGTCGCAAATTATTACACAG 58.978 43.478 0.00 0.00 35.30 3.66
68 69 3.680458 TCGCTGTCGCAAATTATTACACA 59.320 39.130 0.00 0.00 35.30 3.72
82 83 2.159707 CCAACTACCAAAATCGCTGTCG 60.160 50.000 0.00 0.00 0.00 4.35
85 86 2.668279 GCACCAACTACCAAAATCGCTG 60.668 50.000 0.00 0.00 0.00 5.18
106 107 8.116136 GGAAGAAAATTTTGTGTTGCTTTAGTG 58.884 33.333 8.47 0.00 0.00 2.74
109 110 7.221838 CGAGGAAGAAAATTTTGTGTTGCTTTA 59.778 33.333 8.47 0.00 0.00 1.85
121 122 6.263168 AGTTGTCATGTCGAGGAAGAAAATTT 59.737 34.615 0.00 0.00 0.00 1.82
150 151 3.181446 TGTGGTGTTGATGAACCAGATGA 60.181 43.478 0.00 0.00 46.92 2.92
193 194 4.873827 GGGAACACTATTGCGTTTCATCTA 59.126 41.667 0.00 0.00 0.00 1.98
231 232 0.033991 TTGGCTAGCGAGAGAGTCCT 60.034 55.000 9.00 0.00 0.00 3.85
233 234 2.094442 ACTTTTGGCTAGCGAGAGAGTC 60.094 50.000 9.00 0.00 0.00 3.36
234 235 1.896465 ACTTTTGGCTAGCGAGAGAGT 59.104 47.619 9.00 7.21 0.00 3.24
235 236 2.663826 ACTTTTGGCTAGCGAGAGAG 57.336 50.000 9.00 6.59 0.00 3.20
236 237 3.067106 CAAACTTTTGGCTAGCGAGAGA 58.933 45.455 9.00 0.00 34.59 3.10
237 238 3.067106 TCAAACTTTTGGCTAGCGAGAG 58.933 45.455 9.00 9.36 38.66 3.20
239 240 3.067106 TCTCAAACTTTTGGCTAGCGAG 58.933 45.455 9.00 6.40 38.66 5.03
241 242 3.686726 AGATCTCAAACTTTTGGCTAGCG 59.313 43.478 9.00 0.00 38.66 4.26
242 243 6.109359 TCTAGATCTCAAACTTTTGGCTAGC 58.891 40.000 6.04 6.04 38.66 3.42
243 244 8.553459 TTTCTAGATCTCAAACTTTTGGCTAG 57.447 34.615 0.00 8.06 38.66 3.42
245 246 7.823745 TTTTCTAGATCTCAAACTTTTGGCT 57.176 32.000 0.00 0.00 38.66 4.75
246 247 7.062722 GCATTTTCTAGATCTCAAACTTTTGGC 59.937 37.037 0.00 0.00 38.66 4.52
252 495 4.333926 GCCGCATTTTCTAGATCTCAAACT 59.666 41.667 0.00 0.00 0.00 2.66
256 499 3.132824 TCAGCCGCATTTTCTAGATCTCA 59.867 43.478 0.00 0.00 0.00 3.27
262 505 2.096496 CACCTTCAGCCGCATTTTCTAG 59.904 50.000 0.00 0.00 0.00 2.43
274 518 2.072298 CTAGAGTTGCACACCTTCAGC 58.928 52.381 0.00 0.00 0.00 4.26
280 524 2.231478 TGCTAGACTAGAGTTGCACACC 59.769 50.000 13.91 0.00 0.00 4.16
321 565 2.696759 CGCTGGCGGTTTAAAGGGG 61.697 63.158 7.12 0.00 35.56 4.79
323 567 2.178273 GCGCTGGCGGTTTAAAGG 59.822 61.111 16.61 0.00 40.19 3.11
345 589 0.458889 TTACCGGTACATGCGACAGC 60.459 55.000 15.53 0.00 45.41 4.40
347 591 0.458889 GCTTACCGGTACATGCGACA 60.459 55.000 15.53 0.00 0.00 4.35
353 597 2.121645 CGGAGGCTTACCGGTACAT 58.878 57.895 15.53 0.49 45.65 2.29
365 609 2.811317 CGCAGAGTCAACGGAGGC 60.811 66.667 0.00 0.00 0.00 4.70
373 617 4.056125 CTCGCCACCGCAGAGTCA 62.056 66.667 0.00 0.00 33.65 3.41
381 625 2.415010 CTCATCCTCTCGCCACCG 59.585 66.667 0.00 0.00 0.00 4.94
382 626 0.755698 TACCTCATCCTCTCGCCACC 60.756 60.000 0.00 0.00 0.00 4.61
387 631 1.683917 CAGGGTTACCTCATCCTCTCG 59.316 57.143 0.00 0.00 46.95 4.04
406 650 1.819288 GAACTCGGACACTCAGATCCA 59.181 52.381 0.00 0.00 34.35 3.41
420 664 1.538512 TGTTCCTCTACCACGAACTCG 59.461 52.381 0.00 0.00 46.33 4.18
425 669 1.616865 CCACTTGTTCCTCTACCACGA 59.383 52.381 0.00 0.00 0.00 4.35
436 680 2.030805 GCCATTGTCTCACCACTTGTTC 60.031 50.000 0.00 0.00 0.00 3.18
437 681 1.956477 GCCATTGTCTCACCACTTGTT 59.044 47.619 0.00 0.00 0.00 2.83
456 700 1.006337 TTTTTCATGCTGCCACCGC 60.006 52.632 0.00 0.00 0.00 5.68
478 722 0.850883 ACAATGGTGGGGTGGGAGAT 60.851 55.000 0.00 0.00 0.00 2.75
493 737 3.255642 CCATCTCAAACCACCGAAACAAT 59.744 43.478 0.00 0.00 0.00 2.71
499 743 1.348064 AGACCATCTCAAACCACCGA 58.652 50.000 0.00 0.00 0.00 4.69
500 744 2.076863 GAAGACCATCTCAAACCACCG 58.923 52.381 0.00 0.00 0.00 4.94
501 745 3.077359 CAGAAGACCATCTCAAACCACC 58.923 50.000 0.00 0.00 0.00 4.61
507 751 1.556911 GAGCCCAGAAGACCATCTCAA 59.443 52.381 0.00 0.00 0.00 3.02
528 850 1.202604 GGGCGAATTCGAGGTGGATTA 60.203 52.381 31.01 0.00 43.02 1.75
532 854 1.815421 CTGGGCGAATTCGAGGTGG 60.815 63.158 31.01 12.05 43.02 4.61
552 874 3.950395 CCAATCTTCCTTCATCTTGTCCC 59.050 47.826 0.00 0.00 0.00 4.46
562 884 4.764308 GGAATCTATGCCCAATCTTCCTTC 59.236 45.833 0.00 0.00 0.00 3.46
563 885 4.734266 GGAATCTATGCCCAATCTTCCTT 58.266 43.478 0.00 0.00 0.00 3.36
573 895 2.354203 GGAGATGACGGAATCTATGCCC 60.354 54.545 2.44 0.00 37.03 5.36
577 899 4.085733 CTCCAGGAGATGACGGAATCTAT 58.914 47.826 11.62 0.00 37.03 1.98
585 907 0.460987 GCAACCTCCAGGAGATGACG 60.461 60.000 19.21 2.92 38.94 4.35
587 909 1.280133 CTTGCAACCTCCAGGAGATGA 59.720 52.381 19.21 4.56 38.94 2.92
596 918 1.739067 ATCGTAAGCTTGCAACCTCC 58.261 50.000 15.13 0.00 37.18 4.30
601 923 3.064207 ACGAGAAATCGTAAGCTTGCAA 58.936 40.909 15.13 0.00 45.19 4.08
628 972 0.872388 CCAAAACTCACAGGCCGTAC 59.128 55.000 0.00 0.00 0.00 3.67
633 977 3.243401 CCTTAACACCAAAACTCACAGGC 60.243 47.826 0.00 0.00 0.00 4.85
637 981 2.956333 AGCCCTTAACACCAAAACTCAC 59.044 45.455 0.00 0.00 0.00 3.51
639 983 3.634910 TGAAGCCCTTAACACCAAAACTC 59.365 43.478 0.00 0.00 0.00 3.01
651 995 6.538742 CAGAACGAATTAATCTGAAGCCCTTA 59.461 38.462 8.27 0.00 42.48 2.69
665 1009 8.743085 ACTACTACTACCATCAGAACGAATTA 57.257 34.615 0.00 0.00 0.00 1.40
672 1016 4.778579 AGCGACTACTACTACCATCAGAA 58.221 43.478 0.00 0.00 0.00 3.02
673 1017 4.141779 TGAGCGACTACTACTACCATCAGA 60.142 45.833 0.00 0.00 0.00 3.27
674 1018 4.127907 TGAGCGACTACTACTACCATCAG 58.872 47.826 0.00 0.00 0.00 2.90
675 1019 4.146745 TGAGCGACTACTACTACCATCA 57.853 45.455 0.00 0.00 0.00 3.07
676 1020 5.453648 CATTGAGCGACTACTACTACCATC 58.546 45.833 0.00 0.00 0.00 3.51
678 1022 3.630769 CCATTGAGCGACTACTACTACCA 59.369 47.826 0.00 0.00 0.00 3.25
679 1023 3.631227 ACCATTGAGCGACTACTACTACC 59.369 47.826 0.00 0.00 0.00 3.18
680 1024 4.897025 ACCATTGAGCGACTACTACTAC 57.103 45.455 0.00 0.00 0.00 2.73
681 1025 5.909621 AAACCATTGAGCGACTACTACTA 57.090 39.130 0.00 0.00 0.00 1.82
682 1026 4.803098 AAACCATTGAGCGACTACTACT 57.197 40.909 0.00 0.00 0.00 2.57
683 1027 6.956299 TTTAAACCATTGAGCGACTACTAC 57.044 37.500 0.00 0.00 0.00 2.73
706 1185 7.739498 ACATACAAAACTTACATCGAGGTTT 57.261 32.000 8.51 2.97 34.50 3.27
707 1186 7.739498 AACATACAAAACTTACATCGAGGTT 57.261 32.000 8.51 0.00 0.00 3.50
720 1199 5.519927 ACAAAGCAGCTCAAACATACAAAAC 59.480 36.000 0.00 0.00 0.00 2.43
725 1204 5.613358 AGTACAAAGCAGCTCAAACATAC 57.387 39.130 0.00 0.00 0.00 2.39
760 1240 9.974980 GGAAAAACTGTTTTGGACTCATTATAA 57.025 29.630 18.33 0.00 37.07 0.98
762 1242 8.017418 TGGAAAAACTGTTTTGGACTCATTAT 57.983 30.769 18.33 0.00 37.07 1.28
765 1245 5.163416 CCTGGAAAAACTGTTTTGGACTCAT 60.163 40.000 18.33 1.83 37.07 2.90
767 1247 4.682787 CCTGGAAAAACTGTTTTGGACTC 58.317 43.478 18.33 11.92 37.07 3.36
769 1249 3.194861 GCCTGGAAAAACTGTTTTGGAC 58.805 45.455 18.33 12.07 37.07 4.02
770 1250 2.834549 TGCCTGGAAAAACTGTTTTGGA 59.165 40.909 18.33 5.04 37.07 3.53
771 1251 3.258971 TGCCTGGAAAAACTGTTTTGG 57.741 42.857 18.33 15.33 37.07 3.28
772 1252 4.094739 CCTTTGCCTGGAAAAACTGTTTTG 59.905 41.667 18.33 7.46 37.07 2.44
773 1253 4.260985 CCTTTGCCTGGAAAAACTGTTTT 58.739 39.130 12.50 12.50 39.70 2.43
774 1254 3.370421 CCCTTTGCCTGGAAAAACTGTTT 60.370 43.478 0.64 0.00 0.00 2.83
775 1255 2.170397 CCCTTTGCCTGGAAAAACTGTT 59.830 45.455 0.64 0.00 0.00 3.16
776 1256 1.762370 CCCTTTGCCTGGAAAAACTGT 59.238 47.619 0.64 0.00 0.00 3.55
777 1257 1.762370 ACCCTTTGCCTGGAAAAACTG 59.238 47.619 0.64 0.00 0.00 3.16
780 1260 2.301583 GCATACCCTTTGCCTGGAAAAA 59.698 45.455 0.64 0.00 33.95 1.94
783 1263 3.281332 GCATACCCTTTGCCTGGAA 57.719 52.632 0.00 0.00 33.95 3.53
794 1274 7.291182 ACATCTAGATATATCCAAGGCATACCC 59.709 40.741 4.54 0.00 36.11 3.69
795 1275 8.147058 CACATCTAGATATATCCAAGGCATACC 58.853 40.741 4.54 0.00 0.00 2.73
796 1276 8.700051 ACACATCTAGATATATCCAAGGCATAC 58.300 37.037 4.54 0.00 0.00 2.39
799 1279 6.956435 AGACACATCTAGATATATCCAAGGCA 59.044 38.462 4.54 0.00 31.46 4.75
814 1294 9.419297 GGATGCGTAATAATTAAGACACATCTA 57.581 33.333 19.85 0.00 33.57 1.98
815 1295 7.931407 TGGATGCGTAATAATTAAGACACATCT 59.069 33.333 19.85 0.60 36.42 2.90
817 1297 8.445275 TTGGATGCGTAATAATTAAGACACAT 57.555 30.769 4.25 4.25 0.00 3.21
818 1298 7.551262 ACTTGGATGCGTAATAATTAAGACACA 59.449 33.333 0.00 0.00 0.00 3.72
820 1300 7.766738 TCACTTGGATGCGTAATAATTAAGACA 59.233 33.333 0.00 0.00 0.00 3.41
821 1301 8.062448 GTCACTTGGATGCGTAATAATTAAGAC 58.938 37.037 0.00 0.00 0.00 3.01
824 1887 8.500753 AAGTCACTTGGATGCGTAATAATTAA 57.499 30.769 0.00 0.00 0.00 1.40
828 1891 7.766738 TGATTAAGTCACTTGGATGCGTAATAA 59.233 33.333 0.00 0.00 0.00 1.40
831 1894 5.483811 TGATTAAGTCACTTGGATGCGTAA 58.516 37.500 0.00 0.00 0.00 3.18
833 1896 3.937814 TGATTAAGTCACTTGGATGCGT 58.062 40.909 0.00 0.00 0.00 5.24
834 1897 4.393062 ACTTGATTAAGTCACTTGGATGCG 59.607 41.667 0.00 0.00 43.53 4.73
835 1898 5.886960 ACTTGATTAAGTCACTTGGATGC 57.113 39.130 0.00 0.00 43.53 3.91
837 1900 9.793259 TTTTCTACTTGATTAAGTCACTTGGAT 57.207 29.630 6.09 0.00 43.53 3.41
839 1902 8.009974 CGTTTTCTACTTGATTAAGTCACTTGG 58.990 37.037 6.09 0.00 43.53 3.61
841 1904 8.882415 TCGTTTTCTACTTGATTAAGTCACTT 57.118 30.769 6.09 0.00 43.53 3.16
863 1926 7.329717 TGCACACTTTGTTTTTATCTTTTTCGT 59.670 29.630 0.00 0.00 0.00 3.85
864 1927 7.670916 TGCACACTTTGTTTTTATCTTTTTCG 58.329 30.769 0.00 0.00 0.00 3.46
865 1928 9.986833 ATTGCACACTTTGTTTTTATCTTTTTC 57.013 25.926 0.00 0.00 0.00 2.29
867 1930 9.986833 GAATTGCACACTTTGTTTTTATCTTTT 57.013 25.926 0.00 0.00 0.00 2.27
868 1931 9.382275 AGAATTGCACACTTTGTTTTTATCTTT 57.618 25.926 0.00 0.00 0.00 2.52
869 1932 8.947055 AGAATTGCACACTTTGTTTTTATCTT 57.053 26.923 0.00 0.00 0.00 2.40
871 1934 8.976715 CAAGAATTGCACACTTTGTTTTTATC 57.023 30.769 0.00 0.00 40.39 1.75
918 2076 0.940126 GTCTGAATGGCTGCCATACG 59.060 55.000 32.71 22.48 44.40 3.06
920 2078 1.134007 CCTGTCTGAATGGCTGCCATA 60.134 52.381 32.71 18.29 44.40 2.74
932 2090 1.408969 TATATGCGGCACCTGTCTGA 58.591 50.000 4.03 0.00 0.00 3.27
935 2093 2.271800 GCTATATATGCGGCACCTGTC 58.728 52.381 4.03 0.00 0.00 3.51
965 2123 4.877323 GGACAAACCTCGTTGGATAATC 57.123 45.455 4.38 0.00 39.71 1.75
994 2153 8.352942 GGAATTTCGAGCATGATTTTTATAGGT 58.647 33.333 0.00 0.00 0.00 3.08
995 2154 7.535258 CGGAATTTCGAGCATGATTTTTATAGG 59.465 37.037 0.00 0.00 0.00 2.57
996 2155 7.535258 CCGGAATTTCGAGCATGATTTTTATAG 59.465 37.037 7.98 0.00 0.00 1.31
997 2156 7.012894 ACCGGAATTTCGAGCATGATTTTTATA 59.987 33.333 9.46 0.00 0.00 0.98
1169 2349 1.133136 AGCGGCTTTCTATCTAGGGGA 60.133 52.381 0.00 0.00 0.00 4.81
1244 2428 0.032615 GCAGGAAGAGGAGGAGGAGA 60.033 60.000 0.00 0.00 0.00 3.71
1294 2478 5.867903 CTGATATATTCAGGGGCTAGGAG 57.132 47.826 0.00 0.00 46.89 3.69
1310 2494 5.545723 AGCAATCTACCAACCTAGCTGATAT 59.454 40.000 0.00 0.00 0.00 1.63
1312 2496 3.713764 AGCAATCTACCAACCTAGCTGAT 59.286 43.478 0.00 0.00 0.00 2.90
1313 2497 3.107601 AGCAATCTACCAACCTAGCTGA 58.892 45.455 0.00 0.00 0.00 4.26
1314 2498 3.201290 CAGCAATCTACCAACCTAGCTG 58.799 50.000 0.00 0.00 41.64 4.24
1421 2631 4.195334 ATGAGGCCCATCCACCGC 62.195 66.667 0.00 0.00 37.29 5.68
1422 2632 2.203252 CATGAGGCCCATCCACCG 60.203 66.667 0.00 0.00 37.29 4.94
1423 2633 2.196776 CCATGAGGCCCATCCACC 59.803 66.667 0.00 0.00 37.29 4.61
1533 2743 4.424711 ATGCCCGAACACGCCCAT 62.425 61.111 0.00 0.00 0.00 4.00
1600 2810 3.199727 TGCACAATCCATGGCTTCTACTA 59.800 43.478 6.96 0.00 0.00 1.82
1601 2811 2.025981 TGCACAATCCATGGCTTCTACT 60.026 45.455 6.96 0.00 0.00 2.57
1620 2830 6.436261 CATCAATCAAACAGTAGGATGATGC 58.564 40.000 0.00 0.00 34.16 3.91
1630 2840 4.242475 CATGCAAGCATCAATCAAACAGT 58.758 39.130 4.24 0.00 33.90 3.55
1695 2905 1.001633 TCCTCTGCTACAAACCCGTTC 59.998 52.381 0.00 0.00 0.00 3.95
1699 2909 0.741221 CGCTCCTCTGCTACAAACCC 60.741 60.000 0.00 0.00 0.00 4.11
1701 2914 1.362406 GCCGCTCCTCTGCTACAAAC 61.362 60.000 0.00 0.00 0.00 2.93
1706 2919 3.826754 CACGCCGCTCCTCTGCTA 61.827 66.667 0.00 0.00 0.00 3.49
1863 3091 6.016777 GGAATCTTGAGTTCTTGACACAACAT 60.017 38.462 0.47 0.00 34.53 2.71
1868 3096 4.150804 GTCGGAATCTTGAGTTCTTGACAC 59.849 45.833 0.00 0.00 34.33 3.67
1929 3157 5.389859 TTCTTATTGCACAATCCAACCAG 57.610 39.130 0.00 0.00 32.50 4.00
1932 3160 6.091169 CCATGTTTCTTATTGCACAATCCAAC 59.909 38.462 0.00 0.76 32.50 3.77
1943 5803 6.575267 TGATTCATGCCCATGTTTCTTATTG 58.425 36.000 8.02 0.00 39.72 1.90
1946 5806 6.795144 AATGATTCATGCCCATGTTTCTTA 57.205 33.333 8.02 0.00 39.72 2.10
2004 5864 9.290988 TGAAGTTATATTCCTGCACAAAAGTAA 57.709 29.630 0.00 0.00 0.00 2.24
2022 5882 4.201812 CGAAACGATGCCACATGAAGTTAT 60.202 41.667 0.00 0.00 0.00 1.89
2025 5885 1.464608 CGAAACGATGCCACATGAAGT 59.535 47.619 0.00 0.00 0.00 3.01
2060 5922 6.486941 CACCCTCCCCAAATAAGTACTAAAA 58.513 40.000 0.00 0.00 0.00 1.52
2063 5925 4.042174 CCACCCTCCCCAAATAAGTACTA 58.958 47.826 0.00 0.00 0.00 1.82
2083 5945 5.892686 TCAATCATGAGCAAATTACATCCCA 59.107 36.000 0.09 0.00 0.00 4.37
2126 5991 6.830838 AGTGAGTGACATCATGACTACATCTA 59.169 38.462 0.00 0.00 34.15 1.98
2127 5992 5.655974 AGTGAGTGACATCATGACTACATCT 59.344 40.000 0.00 0.00 34.15 2.90
2128 5993 5.747675 CAGTGAGTGACATCATGACTACATC 59.252 44.000 0.00 0.00 34.15 3.06
2129 5994 5.420104 TCAGTGAGTGACATCATGACTACAT 59.580 40.000 0.00 0.00 37.19 2.29
2130 5995 4.766891 TCAGTGAGTGACATCATGACTACA 59.233 41.667 0.00 0.00 0.00 2.74
2131 5996 5.316327 TCAGTGAGTGACATCATGACTAC 57.684 43.478 0.00 0.00 0.00 2.73
2132 5997 5.653769 TGATCAGTGAGTGACATCATGACTA 59.346 40.000 0.00 0.00 38.28 2.59
2174 6039 9.234827 TCAGATTTTCTTGAGAATAAATCAGCA 57.765 29.630 15.33 2.68 33.54 4.41
2218 6087 5.501156 AGAACAGAGAAAACACAAGGAAGT 58.499 37.500 0.00 0.00 0.00 3.01
2286 6168 6.032094 CGTTACTTTCCTTCAAGCTCGTATA 58.968 40.000 0.00 0.00 0.00 1.47
2287 6169 4.863131 CGTTACTTTCCTTCAAGCTCGTAT 59.137 41.667 0.00 0.00 0.00 3.06
2289 6171 3.057734 CGTTACTTTCCTTCAAGCTCGT 58.942 45.455 0.00 0.00 0.00 4.18
2291 6173 3.186613 CACCGTTACTTTCCTTCAAGCTC 59.813 47.826 0.00 0.00 0.00 4.09
2292 6174 3.139077 CACCGTTACTTTCCTTCAAGCT 58.861 45.455 0.00 0.00 0.00 3.74
2293 6175 2.225727 CCACCGTTACTTTCCTTCAAGC 59.774 50.000 0.00 0.00 0.00 4.01
2295 6177 2.158726 AGCCACCGTTACTTTCCTTCAA 60.159 45.455 0.00 0.00 0.00 2.69
2296 6178 1.418637 AGCCACCGTTACTTTCCTTCA 59.581 47.619 0.00 0.00 0.00 3.02
2297 6179 2.180432 AGCCACCGTTACTTTCCTTC 57.820 50.000 0.00 0.00 0.00 3.46
2298 6180 2.651382 AAGCCACCGTTACTTTCCTT 57.349 45.000 0.00 0.00 0.00 3.36
2299 6181 3.775261 TTAAGCCACCGTTACTTTCCT 57.225 42.857 0.00 0.00 0.00 3.36
2300 6182 4.004982 TGATTAAGCCACCGTTACTTTCC 58.995 43.478 0.00 0.00 0.00 3.13
2301 6183 5.616488 TTGATTAAGCCACCGTTACTTTC 57.384 39.130 0.00 0.00 0.00 2.62
2302 6184 5.124936 GGATTGATTAAGCCACCGTTACTTT 59.875 40.000 0.00 0.00 41.99 2.66
2303 6185 4.638865 GGATTGATTAAGCCACCGTTACTT 59.361 41.667 0.00 0.00 41.99 2.24
2304 6186 4.080526 AGGATTGATTAAGCCACCGTTACT 60.081 41.667 7.32 0.00 44.84 2.24
2305 6187 4.196971 AGGATTGATTAAGCCACCGTTAC 58.803 43.478 7.32 0.00 44.84 2.50
2306 6188 4.163458 AGAGGATTGATTAAGCCACCGTTA 59.837 41.667 7.32 0.00 44.84 3.18
2677 6571 2.798680 AGACATTAACGCACGCTAGAG 58.201 47.619 0.00 0.00 0.00 2.43
2916 6831 2.047274 CATGGCCGGACACGTCTT 60.047 61.111 15.41 0.00 38.78 3.01
3015 6940 0.723790 CGCTCACAAAGAAAGCAGCG 60.724 55.000 0.00 0.00 43.21 5.18
3072 6997 1.863454 GATGGAGCAGATAACAGCACG 59.137 52.381 0.00 0.00 0.00 5.34
3106 7031 4.908601 TGCTAAGAAATCCTCAGGTGAA 57.091 40.909 0.00 0.00 0.00 3.18
3107 7032 4.908601 TTGCTAAGAAATCCTCAGGTGA 57.091 40.909 0.00 0.00 0.00 4.02
3109 8109 4.786425 GGATTGCTAAGAAATCCTCAGGT 58.214 43.478 12.66 0.00 46.48 4.00
3116 8116 6.431198 TGTTAACGGGATTGCTAAGAAATC 57.569 37.500 0.26 0.00 34.00 2.17
3117 8117 6.827586 TTGTTAACGGGATTGCTAAGAAAT 57.172 33.333 0.26 0.00 0.00 2.17
3124 8124 3.958018 TGGTATTGTTAACGGGATTGCT 58.042 40.909 0.26 0.00 0.00 3.91
3128 8128 9.856162 AAACTATTATGGTATTGTTAACGGGAT 57.144 29.630 0.26 0.00 0.00 3.85
3135 8135 9.480053 GGCGACTAAACTATTATGGTATTGTTA 57.520 33.333 0.00 0.00 0.00 2.41
3137 8137 7.656137 CAGGCGACTAAACTATTATGGTATTGT 59.344 37.037 0.00 0.00 40.21 2.71
3138 8138 7.870954 TCAGGCGACTAAACTATTATGGTATTG 59.129 37.037 0.00 0.00 40.21 1.90
3139 8139 7.959175 TCAGGCGACTAAACTATTATGGTATT 58.041 34.615 0.00 0.00 40.21 1.89
3140 8140 7.450634 TCTCAGGCGACTAAACTATTATGGTAT 59.549 37.037 0.00 0.00 40.21 2.73
3141 8141 6.774170 TCTCAGGCGACTAAACTATTATGGTA 59.226 38.462 0.00 0.00 40.21 3.25
3142 8142 5.597182 TCTCAGGCGACTAAACTATTATGGT 59.403 40.000 0.00 0.00 40.21 3.55
3143 8143 6.085555 TCTCAGGCGACTAAACTATTATGG 57.914 41.667 0.00 0.00 40.21 2.74
3144 8144 8.594881 AATTCTCAGGCGACTAAACTATTATG 57.405 34.615 0.00 0.00 40.21 1.90
3146 8146 8.475639 AGAAATTCTCAGGCGACTAAACTATTA 58.524 33.333 0.00 0.00 40.21 0.98
3197 10154 6.349363 GGAGGTCCAACAATATGTGAAAGAAC 60.349 42.308 0.00 0.00 35.64 3.01
3201 10158 4.991776 TGGAGGTCCAACAATATGTGAAA 58.008 39.130 0.00 0.00 44.35 2.69
3209 10166 1.004044 CTCAGCTGGAGGTCCAACAAT 59.996 52.381 15.13 0.00 46.97 2.71
3226 10183 0.685097 CCTTCCCGAGTGTTTCCTCA 59.315 55.000 0.00 0.00 0.00 3.86
3240 10197 2.803817 TATCGCCTTCCCGCCTTCC 61.804 63.158 0.00 0.00 0.00 3.46
3242 10199 1.906105 TTGTATCGCCTTCCCGCCTT 61.906 55.000 0.00 0.00 0.00 4.35
3243 10200 2.363975 TTGTATCGCCTTCCCGCCT 61.364 57.895 0.00 0.00 0.00 5.52
3244 10201 2.178235 GTTGTATCGCCTTCCCGCC 61.178 63.158 0.00 0.00 0.00 6.13
3246 10203 0.810031 CTGGTTGTATCGCCTTCCCG 60.810 60.000 0.00 0.00 0.00 5.14
3274 10409 4.208460 TGTCTTATAATCACTAAAGCGCGC 59.792 41.667 26.66 26.66 0.00 6.86
3298 10433 8.867097 TCTACTGAGGTTCTTAATAGTTTGTGT 58.133 33.333 0.00 0.00 0.00 3.72
3321 10456 8.655651 AATTTTGGAAATTTTGCGAAGTTCTA 57.344 26.923 11.05 4.42 0.00 2.10
3323 10458 7.525854 CGTAATTTTGGAAATTTTGCGAAGTTC 59.474 33.333 12.52 0.08 29.56 3.01
3329 10464 5.305036 GCTCGTAATTTTGGAAATTTTGCG 58.695 37.500 4.21 7.26 0.00 4.85
3358 10493 3.056962 TGATTTGCGCTGCCATAGAAAAA 60.057 39.130 9.73 0.00 0.00 1.94
3359 10494 2.491298 TGATTTGCGCTGCCATAGAAAA 59.509 40.909 9.73 0.00 0.00 2.29
3360 10495 2.090760 TGATTTGCGCTGCCATAGAAA 58.909 42.857 9.73 0.00 0.00 2.52
3361 10496 1.748950 TGATTTGCGCTGCCATAGAA 58.251 45.000 9.73 0.00 0.00 2.10
3362 10497 1.971481 ATGATTTGCGCTGCCATAGA 58.029 45.000 9.73 0.00 0.00 1.98
3363 10498 2.787601 AATGATTTGCGCTGCCATAG 57.212 45.000 9.73 0.00 0.00 2.23
3364 10499 4.645762 TTTAATGATTTGCGCTGCCATA 57.354 36.364 9.73 0.00 0.00 2.74
3365 10500 3.523606 TTTAATGATTTGCGCTGCCAT 57.476 38.095 9.73 4.11 0.00 4.40
3366 10501 3.188492 CATTTAATGATTTGCGCTGCCA 58.812 40.909 9.73 1.54 0.00 4.92
3367 10502 2.033492 GCATTTAATGATTTGCGCTGCC 60.033 45.455 9.73 0.00 0.00 4.85
3368 10503 2.861935 AGCATTTAATGATTTGCGCTGC 59.138 40.909 9.73 5.23 40.00 5.25
3369 10504 4.106909 TCAGCATTTAATGATTTGCGCTG 58.893 39.130 9.73 6.95 45.34 5.18
3370 10505 4.374843 TCAGCATTTAATGATTTGCGCT 57.625 36.364 9.73 0.00 40.00 5.92
3371 10506 5.453281 TTTCAGCATTTAATGATTTGCGC 57.547 34.783 9.36 0.00 40.00 6.09
3372 10507 6.819437 TGTTTTCAGCATTTAATGATTTGCG 58.181 32.000 9.36 0.00 40.00 4.85
3373 10508 9.615295 AAATGTTTTCAGCATTTAATGATTTGC 57.385 25.926 9.36 0.00 42.59 3.68
3378 10513 9.761504 TCAGAAAATGTTTTCAGCATTTAATGA 57.238 25.926 17.60 7.75 46.81 2.57
3451 10601 8.522178 AAATTTCAACAAGTGTTCGTGTTTTA 57.478 26.923 0.00 0.00 42.42 1.52
3562 10716 7.382759 GCAACTTCATAAAATGTTCCCGTTTTA 59.617 33.333 3.19 3.19 42.94 1.52
3568 10722 5.054390 TCGCAACTTCATAAAATGTTCCC 57.946 39.130 0.00 0.00 0.00 3.97
3661 10815 7.045031 GCGGTTCAAAAATTGTTCACAAATTTC 60.045 33.333 6.25 0.00 37.81 2.17
3669 10823 3.619038 GGTTGCGGTTCAAAAATTGTTCA 59.381 39.130 0.00 0.00 36.26 3.18
3689 10843 2.499289 TGCAGGTGTTTCAACAATTGGT 59.501 40.909 10.83 0.00 41.21 3.67
3690 10844 3.176552 TGCAGGTGTTTCAACAATTGG 57.823 42.857 10.83 0.00 41.21 3.16
3703 10857 3.700539 TCATGTTCCCATATTTGCAGGTG 59.299 43.478 0.00 0.00 0.00 4.00
3781 10935 8.864916 GTGCACAACGTTTTAAAAATTTATTCG 58.135 29.630 13.17 2.96 0.00 3.34
3798 10952 5.447478 TTTTCTTCAAAATGTGCACAACG 57.553 34.783 25.72 12.39 0.00 4.10
3863 11020 7.814642 TGTTTCACATTTCAAAAATTGCTTGT 58.185 26.923 1.62 0.00 0.00 3.16
3917 11076 7.065216 TCATGTTTCGAAAATTGTTTGCAAA 57.935 28.000 13.10 8.05 38.21 3.68
3918 11077 6.653273 TCATGTTTCGAAAATTGTTTGCAA 57.347 29.167 13.10 0.00 39.16 4.08
3922 11081 9.919348 CAAGAAATCATGTTTCGAAAATTGTTT 57.081 25.926 13.10 14.01 33.86 2.83
4010 11170 8.734386 GTTCAAACATCTGAAAATGTCTAGGAT 58.266 33.333 0.00 0.00 38.92 3.24
4015 11175 8.872845 GTTTTGTTCAAACATCTGAAAATGTCT 58.127 29.630 0.00 0.00 43.93 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.