Multiple sequence alignment - TraesCS6D01G344300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G344300 chr6D 100.000 6459 0 0 1 6459 443961536 443955078 0.000000e+00 11891
1 TraesCS6D01G344300 chr6D 97.872 94 2 0 2925 3018 27308705 27308612 5.180000e-36 163
2 TraesCS6D01G344300 chr6A 96.852 2668 52 13 3014 5666 591473727 591471077 0.000000e+00 4433
3 TraesCS6D01G344300 chr6A 95.421 1223 21 11 997 2196 591475738 591474528 0.000000e+00 1916
4 TraesCS6D01G344300 chr6A 94.328 811 28 5 2138 2936 591474526 591473722 0.000000e+00 1227
5 TraesCS6D01G344300 chr6A 92.507 734 34 11 244 970 591476456 591475737 0.000000e+00 1031
6 TraesCS6D01G344300 chr6A 91.040 346 17 3 6069 6401 591470803 591470459 7.630000e-124 455
7 TraesCS6D01G344300 chr6A 95.785 261 10 1 5824 6083 591471082 591470822 2.780000e-113 420
8 TraesCS6D01G344300 chr6A 92.523 107 7 1 2929 3034 593927354 593927248 1.120000e-32 152
9 TraesCS6D01G344300 chr6B 92.977 2506 102 22 3195 5666 668512784 668510319 0.000000e+00 3585
10 TraesCS6D01G344300 chr6B 91.894 1320 55 12 262 1562 668515653 668514367 0.000000e+00 1797
11 TraesCS6D01G344300 chr6B 94.618 706 17 4 2252 2936 668513791 668513086 0.000000e+00 1074
12 TraesCS6D01G344300 chr6B 93.077 650 29 8 5824 6459 668510324 668509677 0.000000e+00 937
13 TraesCS6D01G344300 chr6B 90.520 538 31 15 1660 2185 668514345 668513816 0.000000e+00 693
14 TraesCS6D01G344300 chr6B 97.861 187 3 1 3014 3199 668513091 668512905 8.080000e-84 322
15 TraesCS6D01G344300 chrUn 100.000 218 0 0 1 218 206984223 206984006 2.800000e-108 403
16 TraesCS6D01G344300 chr2D 92.063 189 13 2 5649 5836 486334724 486334911 1.380000e-66 265
17 TraesCS6D01G344300 chr2D 93.452 168 11 0 5665 5832 593801596 593801763 3.870000e-62 250
18 TraesCS6D01G344300 chr4D 95.062 162 8 0 5668 5829 93336845 93336684 8.310000e-64 255
19 TraesCS6D01G344300 chr3B 92.090 177 14 0 5653 5829 432844540 432844716 3.870000e-62 250
20 TraesCS6D01G344300 chr3B 93.519 108 5 2 2920 3025 2309011 2308904 6.700000e-35 159
21 TraesCS6D01G344300 chr1D 94.444 162 9 0 5668 5829 458805538 458805377 3.870000e-62 250
22 TraesCS6D01G344300 chr1D 93.452 168 11 0 5665 5832 466603290 466603457 3.870000e-62 250
23 TraesCS6D01G344300 chr1D 100.000 88 0 0 2933 3020 463248113 463248200 5.180000e-36 163
24 TraesCS6D01G344300 chr5D 93.373 166 11 0 5665 5830 460392860 460393025 5.000000e-61 246
25 TraesCS6D01G344300 chr4A 90.761 184 17 0 5659 5842 141122661 141122844 5.000000e-61 246
26 TraesCS6D01G344300 chr3D 93.373 166 11 0 5665 5830 22383437 22383602 5.000000e-61 246
27 TraesCS6D01G344300 chr7A 85.714 217 26 4 5 218 723923871 723923657 2.340000e-54 224
28 TraesCS6D01G344300 chr7A 91.150 113 8 2 2923 3034 619632749 619632638 1.120000e-32 152
29 TraesCS6D01G344300 chr1B 98.913 92 1 0 2928 3019 343996029 343995938 1.440000e-36 165
30 TraesCS6D01G344300 chr1B 96.875 96 3 0 2923 3018 604705678 604705773 1.860000e-35 161
31 TraesCS6D01G344300 chr5B 96.907 97 2 1 2924 3020 229751962 229751867 1.860000e-35 161
32 TraesCS6D01G344300 chr5B 91.892 111 6 3 2931 3041 331307491 331307384 1.120000e-32 152


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G344300 chr6D 443955078 443961536 6458 True 11891.000000 11891 100.000000 1 6459 1 chr6D.!!$R2 6458
1 TraesCS6D01G344300 chr6A 591470459 591476456 5997 True 1580.333333 4433 94.322167 244 6401 6 chr6A.!!$R2 6157
2 TraesCS6D01G344300 chr6B 668509677 668515653 5976 True 1401.333333 3585 93.491167 262 6459 6 chr6B.!!$R1 6197

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
195 196 0.032678 ACACGACTGGCTGTTCTCTG 59.967 55.000 0.00 0.0 0.00 3.35 F
708 714 0.321387 ACGGTCTCTGACGAGCTACA 60.321 55.000 0.00 0.0 37.19 2.74 F
1064 1084 1.606313 CAAGAACCCGCCACCCAAT 60.606 57.895 0.00 0.0 0.00 3.16 F
1262 1296 2.042435 CGCCTCCCCTTCCTCTCT 60.042 66.667 0.00 0.0 0.00 3.10 F
1442 1476 2.397751 GGTACGCCTACGAGCACTA 58.602 57.895 0.00 0.0 43.93 2.74 F
2470 2621 0.526662 AAGGCTACTTCCGTCTCACG 59.473 55.000 0.00 0.0 42.11 4.35 F
3731 4017 1.001631 TAGCCCTGCTACAGCTCCA 59.998 57.895 2.44 0.0 40.44 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1454 1488 0.392461 CCCGGGAAAGAATCAGCGAA 60.392 55.000 18.48 0.0 0.00 4.70 R
1696 1745 1.657794 GCCGGAGCGATAGAACGTC 60.658 63.158 5.05 0.0 39.76 4.34 R
2203 2339 1.754234 CTTCCGGGGGAATGCCTTG 60.754 63.158 0.00 0.0 41.23 3.61 R
2204 2340 1.926426 CTCTTCCGGGGGAATGCCTT 61.926 60.000 0.00 0.0 41.23 4.35 R
2577 2729 1.981256 AAAAGATGGACGGCAAGTGT 58.019 45.000 0.00 0.0 0.00 3.55 R
4351 4653 2.959507 AACAAAAGGAACAGTGTGGC 57.040 45.000 0.00 0.0 0.00 5.01 R
5537 5860 0.038166 GAGCCAACCAACAGGATCCA 59.962 55.000 15.82 0.0 34.32 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.522668 CCCGCAACTGTTTCATCAGA 58.477 50.000 0.65 0.00 38.63 3.27
20 21 2.086869 CCCGCAACTGTTTCATCAGAT 58.913 47.619 0.65 0.00 38.63 2.90
21 22 2.096496 CCCGCAACTGTTTCATCAGATC 59.904 50.000 0.65 0.00 38.63 2.75
22 23 3.005554 CCGCAACTGTTTCATCAGATCT 58.994 45.455 0.00 0.00 38.63 2.75
23 24 3.438087 CCGCAACTGTTTCATCAGATCTT 59.562 43.478 0.00 0.00 38.63 2.40
24 25 4.083110 CCGCAACTGTTTCATCAGATCTTT 60.083 41.667 0.00 0.00 38.63 2.52
25 26 5.084722 CGCAACTGTTTCATCAGATCTTTC 58.915 41.667 0.00 0.00 38.63 2.62
26 27 5.334337 CGCAACTGTTTCATCAGATCTTTCA 60.334 40.000 0.00 0.00 38.63 2.69
27 28 6.618811 GCAACTGTTTCATCAGATCTTTCAT 58.381 36.000 0.00 0.00 38.63 2.57
28 29 6.527023 GCAACTGTTTCATCAGATCTTTCATG 59.473 38.462 0.00 0.00 38.63 3.07
29 30 7.591165 CAACTGTTTCATCAGATCTTTCATGT 58.409 34.615 0.00 0.00 38.63 3.21
30 31 8.724229 CAACTGTTTCATCAGATCTTTCATGTA 58.276 33.333 0.00 0.00 38.63 2.29
31 32 8.853077 ACTGTTTCATCAGATCTTTCATGTAA 57.147 30.769 0.00 0.00 38.63 2.41
32 33 9.288576 ACTGTTTCATCAGATCTTTCATGTAAA 57.711 29.630 0.00 0.00 38.63 2.01
33 34 9.552114 CTGTTTCATCAGATCTTTCATGTAAAC 57.448 33.333 0.00 8.95 37.61 2.01
34 35 9.065798 TGTTTCATCAGATCTTTCATGTAAACA 57.934 29.630 18.55 18.55 31.41 2.83
37 38 9.676861 TTCATCAGATCTTTCATGTAAACATCT 57.323 29.630 0.00 0.00 34.29 2.90
43 44 8.834465 AGATCTTTCATGTAAACATCTATGTGC 58.166 33.333 0.00 0.00 41.61 4.57
44 45 8.743085 ATCTTTCATGTAAACATCTATGTGCT 57.257 30.769 0.00 0.00 41.61 4.40
45 46 8.565896 TCTTTCATGTAAACATCTATGTGCTT 57.434 30.769 0.00 0.00 41.61 3.91
46 47 8.453320 TCTTTCATGTAAACATCTATGTGCTTG 58.547 33.333 0.00 0.78 41.61 4.01
47 48 7.686438 TTCATGTAAACATCTATGTGCTTGT 57.314 32.000 0.00 0.00 41.61 3.16
48 49 7.075674 TCATGTAAACATCTATGTGCTTGTG 57.924 36.000 0.00 0.00 41.61 3.33
49 50 6.654582 TCATGTAAACATCTATGTGCTTGTGT 59.345 34.615 0.00 0.00 41.61 3.72
50 51 6.239908 TGTAAACATCTATGTGCTTGTGTG 57.760 37.500 0.00 0.00 41.61 3.82
51 52 5.994668 TGTAAACATCTATGTGCTTGTGTGA 59.005 36.000 0.00 0.00 41.61 3.58
52 53 5.362556 AAACATCTATGTGCTTGTGTGAC 57.637 39.130 0.00 0.00 41.61 3.67
53 54 2.995939 ACATCTATGTGCTTGTGTGACG 59.004 45.455 0.00 0.00 40.03 4.35
54 55 2.078849 TCTATGTGCTTGTGTGACGG 57.921 50.000 0.00 0.00 0.00 4.79
55 56 1.343142 TCTATGTGCTTGTGTGACGGT 59.657 47.619 0.00 0.00 0.00 4.83
56 57 1.726791 CTATGTGCTTGTGTGACGGTC 59.273 52.381 0.00 0.00 0.00 4.79
57 58 0.179059 ATGTGCTTGTGTGACGGTCA 60.179 50.000 6.76 6.76 0.00 4.02
58 59 0.809636 TGTGCTTGTGTGACGGTCAG 60.810 55.000 11.83 0.23 0.00 3.51
59 60 0.810031 GTGCTTGTGTGACGGTCAGT 60.810 55.000 11.83 0.00 0.00 3.41
60 61 0.809636 TGCTTGTGTGACGGTCAGTG 60.810 55.000 11.83 1.70 0.00 3.66
61 62 1.498865 GCTTGTGTGACGGTCAGTGG 61.499 60.000 11.83 2.07 0.00 4.00
62 63 0.104120 CTTGTGTGACGGTCAGTGGA 59.896 55.000 11.83 0.00 0.00 4.02
63 64 0.179094 TTGTGTGACGGTCAGTGGAC 60.179 55.000 11.83 6.80 43.55 4.02
72 73 3.917072 GTCAGTGGACCTTCTCACC 57.083 57.895 0.00 0.00 38.12 4.02
73 74 1.048601 GTCAGTGGACCTTCTCACCA 58.951 55.000 0.00 0.00 38.12 4.17
74 75 1.625818 GTCAGTGGACCTTCTCACCAT 59.374 52.381 0.00 0.00 38.12 3.55
75 76 2.039084 GTCAGTGGACCTTCTCACCATT 59.961 50.000 0.00 0.00 38.12 3.16
76 77 2.038952 TCAGTGGACCTTCTCACCATTG 59.961 50.000 0.00 0.00 40.89 2.82
77 78 2.057922 AGTGGACCTTCTCACCATTGT 58.942 47.619 0.00 0.00 36.09 2.71
78 79 2.039084 AGTGGACCTTCTCACCATTGTC 59.961 50.000 0.00 0.00 36.09 3.18
79 80 2.054021 TGGACCTTCTCACCATTGTCA 58.946 47.619 0.00 0.00 0.00 3.58
80 81 2.441375 TGGACCTTCTCACCATTGTCAA 59.559 45.455 0.00 0.00 0.00 3.18
81 82 3.074390 TGGACCTTCTCACCATTGTCAAT 59.926 43.478 0.00 0.00 0.00 2.57
82 83 3.441572 GGACCTTCTCACCATTGTCAATG 59.558 47.826 17.24 17.24 38.63 2.82
83 84 4.326826 GACCTTCTCACCATTGTCAATGA 58.673 43.478 24.31 7.10 41.46 2.57
84 85 4.074970 ACCTTCTCACCATTGTCAATGAC 58.925 43.478 24.31 6.41 41.46 3.06
85 86 4.074259 CCTTCTCACCATTGTCAATGACA 58.926 43.478 24.31 12.63 41.46 3.58
86 87 4.703575 CCTTCTCACCATTGTCAATGACAT 59.296 41.667 24.31 8.71 42.40 3.06
87 88 5.882000 CCTTCTCACCATTGTCAATGACATA 59.118 40.000 24.31 8.61 42.40 2.29
88 89 6.037940 CCTTCTCACCATTGTCAATGACATAG 59.962 42.308 24.31 12.06 42.40 2.23
89 90 6.298441 TCTCACCATTGTCAATGACATAGA 57.702 37.500 24.31 17.18 42.40 1.98
90 91 6.343703 TCTCACCATTGTCAATGACATAGAG 58.656 40.000 24.31 19.97 42.40 2.43
91 92 6.155049 TCTCACCATTGTCAATGACATAGAGA 59.845 38.462 24.31 21.40 42.40 3.10
92 93 6.343703 TCACCATTGTCAATGACATAGAGAG 58.656 40.000 24.31 8.67 42.40 3.20
93 94 5.526479 CACCATTGTCAATGACATAGAGAGG 59.474 44.000 24.31 13.88 42.40 3.69
94 95 5.190528 ACCATTGTCAATGACATAGAGAGGT 59.809 40.000 24.31 14.44 42.40 3.85
95 96 6.118170 CCATTGTCAATGACATAGAGAGGTT 58.882 40.000 24.31 0.00 42.40 3.50
96 97 6.037940 CCATTGTCAATGACATAGAGAGGTTG 59.962 42.308 24.31 4.43 42.40 3.77
97 98 5.745312 TGTCAATGACATAGAGAGGTTGT 57.255 39.130 12.63 0.00 37.67 3.32
98 99 5.482006 TGTCAATGACATAGAGAGGTTGTG 58.518 41.667 12.63 0.00 37.67 3.33
99 100 5.245977 TGTCAATGACATAGAGAGGTTGTGA 59.754 40.000 12.63 0.00 37.67 3.58
100 101 5.809562 GTCAATGACATAGAGAGGTTGTGAG 59.190 44.000 8.74 0.00 32.09 3.51
101 102 5.105187 TCAATGACATAGAGAGGTTGTGAGG 60.105 44.000 0.00 0.00 0.00 3.86
102 103 2.497675 TGACATAGAGAGGTTGTGAGGC 59.502 50.000 0.00 0.00 0.00 4.70
103 104 2.763448 GACATAGAGAGGTTGTGAGGCT 59.237 50.000 0.00 0.00 0.00 4.58
104 105 2.763448 ACATAGAGAGGTTGTGAGGCTC 59.237 50.000 7.79 7.79 0.00 4.70
105 106 1.464734 TAGAGAGGTTGTGAGGCTCG 58.535 55.000 10.42 0.00 0.00 5.03
106 107 0.251386 AGAGAGGTTGTGAGGCTCGA 60.251 55.000 10.42 0.00 0.00 4.04
107 108 0.172352 GAGAGGTTGTGAGGCTCGAG 59.828 60.000 8.45 8.45 0.00 4.04
108 109 1.216710 GAGGTTGTGAGGCTCGAGG 59.783 63.158 15.58 0.00 0.00 4.63
109 110 1.534235 AGGTTGTGAGGCTCGAGGT 60.534 57.895 15.58 0.00 0.00 3.85
110 111 0.251653 AGGTTGTGAGGCTCGAGGTA 60.252 55.000 15.58 0.00 0.00 3.08
111 112 0.108756 GGTTGTGAGGCTCGAGGTAC 60.109 60.000 15.58 2.37 0.00 3.34
127 128 3.973425 AGGTACTCGGTATGTACAACCT 58.027 45.455 18.78 13.31 41.27 3.50
128 129 3.698040 AGGTACTCGGTATGTACAACCTG 59.302 47.826 18.78 14.89 41.27 4.00
129 130 3.445096 GGTACTCGGTATGTACAACCTGT 59.555 47.826 18.78 18.02 41.27 4.00
130 131 4.082026 GGTACTCGGTATGTACAACCTGTT 60.082 45.833 18.78 9.38 41.27 3.16
131 132 4.184079 ACTCGGTATGTACAACCTGTTC 57.816 45.455 18.78 0.00 34.66 3.18
132 133 3.830755 ACTCGGTATGTACAACCTGTTCT 59.169 43.478 18.78 0.00 34.66 3.01
133 134 4.082354 ACTCGGTATGTACAACCTGTTCTC 60.082 45.833 18.78 0.04 34.66 2.87
134 135 3.119743 TCGGTATGTACAACCTGTTCTCG 60.120 47.826 18.78 8.77 34.66 4.04
135 136 3.518590 GGTATGTACAACCTGTTCTCGG 58.481 50.000 15.74 0.00 33.97 4.63
136 137 3.194116 GGTATGTACAACCTGTTCTCGGA 59.806 47.826 15.74 0.00 33.97 4.55
137 138 4.142004 GGTATGTACAACCTGTTCTCGGAT 60.142 45.833 15.74 0.00 33.97 4.18
138 139 3.313012 TGTACAACCTGTTCTCGGATG 57.687 47.619 0.00 0.00 0.00 3.51
139 140 2.631062 TGTACAACCTGTTCTCGGATGT 59.369 45.455 0.00 0.00 0.00 3.06
140 141 2.457366 ACAACCTGTTCTCGGATGTC 57.543 50.000 0.00 0.00 0.00 3.06
141 142 1.002087 ACAACCTGTTCTCGGATGTCC 59.998 52.381 0.00 0.00 0.00 4.02
142 143 1.276421 CAACCTGTTCTCGGATGTCCT 59.724 52.381 0.00 0.00 0.00 3.85
143 144 1.187087 ACCTGTTCTCGGATGTCCTC 58.813 55.000 0.00 0.00 0.00 3.71
144 145 1.272760 ACCTGTTCTCGGATGTCCTCT 60.273 52.381 0.00 0.00 0.00 3.69
145 146 2.025226 ACCTGTTCTCGGATGTCCTCTA 60.025 50.000 0.00 0.00 0.00 2.43
146 147 2.359531 CCTGTTCTCGGATGTCCTCTAC 59.640 54.545 0.00 0.00 0.00 2.59
147 148 3.017442 CTGTTCTCGGATGTCCTCTACA 58.983 50.000 0.00 0.00 43.86 2.74
148 149 3.017442 TGTTCTCGGATGTCCTCTACAG 58.983 50.000 0.00 0.00 42.70 2.74
149 150 1.681538 TCTCGGATGTCCTCTACAGC 58.318 55.000 0.00 0.00 42.70 4.40
157 158 5.537300 GATGTCCTCTACAGCCTAATCAA 57.463 43.478 0.00 0.00 42.70 2.57
158 159 4.737855 TGTCCTCTACAGCCTAATCAAC 57.262 45.455 0.00 0.00 33.01 3.18
159 160 4.093743 TGTCCTCTACAGCCTAATCAACA 58.906 43.478 0.00 0.00 33.01 3.33
160 161 4.081642 TGTCCTCTACAGCCTAATCAACAC 60.082 45.833 0.00 0.00 33.01 3.32
161 162 4.081642 GTCCTCTACAGCCTAATCAACACA 60.082 45.833 0.00 0.00 0.00 3.72
162 163 4.160439 TCCTCTACAGCCTAATCAACACAG 59.840 45.833 0.00 0.00 0.00 3.66
163 164 4.437239 CTCTACAGCCTAATCAACACAGG 58.563 47.826 0.00 0.00 0.00 4.00
164 165 2.496899 ACAGCCTAATCAACACAGGG 57.503 50.000 0.00 0.00 0.00 4.45
165 166 1.098050 CAGCCTAATCAACACAGGGC 58.902 55.000 0.00 0.00 39.82 5.19
166 167 0.698238 AGCCTAATCAACACAGGGCA 59.302 50.000 0.00 0.00 41.71 5.36
167 168 1.285962 AGCCTAATCAACACAGGGCAT 59.714 47.619 0.00 0.00 41.71 4.40
168 169 2.102578 GCCTAATCAACACAGGGCATT 58.897 47.619 0.00 0.00 39.38 3.56
169 170 2.099756 GCCTAATCAACACAGGGCATTC 59.900 50.000 0.00 0.00 39.38 2.67
170 171 3.355378 CCTAATCAACACAGGGCATTCA 58.645 45.455 0.00 0.00 0.00 2.57
171 172 3.129287 CCTAATCAACACAGGGCATTCAC 59.871 47.826 0.00 0.00 0.00 3.18
172 173 2.291209 ATCAACACAGGGCATTCACA 57.709 45.000 0.00 0.00 0.00 3.58
173 174 1.317613 TCAACACAGGGCATTCACAC 58.682 50.000 0.00 0.00 0.00 3.82
174 175 0.314935 CAACACAGGGCATTCACACC 59.685 55.000 0.00 0.00 0.00 4.16
175 176 0.185901 AACACAGGGCATTCACACCT 59.814 50.000 0.00 0.00 34.19 4.00
176 177 1.064003 ACACAGGGCATTCACACCTA 58.936 50.000 0.00 0.00 32.22 3.08
177 178 1.271379 ACACAGGGCATTCACACCTAC 60.271 52.381 0.00 0.00 32.22 3.18
178 179 1.064003 ACAGGGCATTCACACCTACA 58.936 50.000 0.00 0.00 32.22 2.74
179 180 1.271379 ACAGGGCATTCACACCTACAC 60.271 52.381 0.00 0.00 32.22 2.90
180 181 0.036388 AGGGCATTCACACCTACACG 60.036 55.000 0.00 0.00 31.53 4.49
181 182 0.036765 GGGCATTCACACCTACACGA 60.037 55.000 0.00 0.00 0.00 4.35
182 183 1.076332 GGCATTCACACCTACACGAC 58.924 55.000 0.00 0.00 0.00 4.34
183 184 1.337823 GGCATTCACACCTACACGACT 60.338 52.381 0.00 0.00 0.00 4.18
184 185 1.726791 GCATTCACACCTACACGACTG 59.273 52.381 0.00 0.00 0.00 3.51
185 186 2.337583 CATTCACACCTACACGACTGG 58.662 52.381 0.00 0.00 0.00 4.00
186 187 0.032952 TTCACACCTACACGACTGGC 59.967 55.000 0.00 0.00 0.00 4.85
187 188 0.826256 TCACACCTACACGACTGGCT 60.826 55.000 0.00 0.00 0.00 4.75
188 189 0.667487 CACACCTACACGACTGGCTG 60.667 60.000 0.00 0.00 0.00 4.85
189 190 1.113517 ACACCTACACGACTGGCTGT 61.114 55.000 0.00 0.00 0.00 4.40
190 191 0.033504 CACCTACACGACTGGCTGTT 59.966 55.000 0.00 0.00 0.00 3.16
191 192 0.317479 ACCTACACGACTGGCTGTTC 59.683 55.000 0.00 0.00 0.00 3.18
192 193 0.603569 CCTACACGACTGGCTGTTCT 59.396 55.000 0.00 0.00 0.00 3.01
193 194 1.402984 CCTACACGACTGGCTGTTCTC 60.403 57.143 0.00 0.00 0.00 2.87
194 195 1.542030 CTACACGACTGGCTGTTCTCT 59.458 52.381 0.00 0.00 0.00 3.10
195 196 0.032678 ACACGACTGGCTGTTCTCTG 59.967 55.000 0.00 0.00 0.00 3.35
196 197 1.005630 ACGACTGGCTGTTCTCTGC 60.006 57.895 0.00 0.00 37.71 4.26
202 203 4.613929 GCTGTTCTCTGCCTCAGG 57.386 61.111 0.00 0.00 33.40 3.86
217 218 2.116125 AGGCTTCCCCTGCACAAC 59.884 61.111 0.00 0.00 44.28 3.32
247 248 1.687563 CATCCAATCCCCCGTTTACC 58.312 55.000 0.00 0.00 0.00 2.85
248 249 1.214424 CATCCAATCCCCCGTTTACCT 59.786 52.381 0.00 0.00 0.00 3.08
249 250 1.374572 TCCAATCCCCCGTTTACCTT 58.625 50.000 0.00 0.00 0.00 3.50
250 251 1.282738 TCCAATCCCCCGTTTACCTTC 59.717 52.381 0.00 0.00 0.00 3.46
251 252 1.004979 CCAATCCCCCGTTTACCTTCA 59.995 52.381 0.00 0.00 0.00 3.02
413 414 6.763715 ATAGTCCAGCTATGAAATTACCCA 57.236 37.500 0.00 0.00 38.86 4.51
421 422 4.035208 GCTATGAAATTACCCACTGTTCGG 59.965 45.833 0.00 0.00 0.00 4.30
439 440 1.805120 CGGCTGTAGGGTTTATGTCGG 60.805 57.143 0.00 0.00 0.00 4.79
596 602 8.825667 ACTCTGTATTCTTCTTCTCAAAGTTC 57.174 34.615 0.00 0.00 33.95 3.01
643 649 2.681152 ACATCGGCGAACTTTTCAAC 57.319 45.000 15.93 0.00 0.00 3.18
673 679 2.093500 GCATATGCCGTGGATATCTCCA 60.093 50.000 17.26 0.00 41.44 3.86
691 697 2.488153 TCCATCAGATAGGCGTATGACG 59.512 50.000 3.13 0.00 45.88 4.35
708 714 0.321387 ACGGTCTCTGACGAGCTACA 60.321 55.000 0.00 0.00 37.19 2.74
952 964 2.202676 CTCGAGAAGCCCGAGTGC 60.203 66.667 6.58 0.00 45.89 4.40
956 968 3.378399 GAGAAGCCCGAGTGCCCTC 62.378 68.421 0.00 0.00 0.00 4.30
990 1002 2.020100 ATAGCCCCTCCTACCGCTCA 62.020 60.000 0.00 0.00 32.76 4.26
1031 1051 2.208431 GATCAGCCAATCTCAAGTCCG 58.792 52.381 0.00 0.00 0.00 4.79
1063 1083 2.203422 CAAGAACCCGCCACCCAA 60.203 61.111 0.00 0.00 0.00 4.12
1064 1084 1.606313 CAAGAACCCGCCACCCAAT 60.606 57.895 0.00 0.00 0.00 3.16
1262 1296 2.042435 CGCCTCCCCTTCCTCTCT 60.042 66.667 0.00 0.00 0.00 3.10
1415 1449 3.506096 CGGAGTACAGCCGCGAGA 61.506 66.667 8.23 0.00 42.55 4.04
1441 1475 3.194719 GGTACGCCTACGAGCACT 58.805 61.111 0.00 0.00 43.93 4.40
1442 1476 2.397751 GGTACGCCTACGAGCACTA 58.602 57.895 0.00 0.00 43.93 2.74
1454 1488 3.093057 ACGAGCACTAGATTCTTGGAGT 58.907 45.455 0.00 0.00 0.00 3.85
1696 1745 2.887568 GTGCAGTCCCGCGATGAG 60.888 66.667 8.23 0.00 33.35 2.90
2226 2362 1.527370 CATTCCCCCGGAAGAGGTC 59.473 63.158 0.73 0.00 45.48 3.85
2470 2621 0.526662 AAGGCTACTTCCGTCTCACG 59.473 55.000 0.00 0.00 42.11 4.35
2511 2662 6.316390 ACAAAGGTAAGACTTTCAGTGAACTG 59.684 38.462 4.68 3.98 45.08 3.16
2577 2729 6.359804 CCTTGAAATCATAGTTCCCAGATCA 58.640 40.000 0.00 0.00 0.00 2.92
2743 2901 8.877808 TTGACTAATGTCTGTCTGCTATATTG 57.122 34.615 0.00 0.00 43.29 1.90
2942 3102 9.589461 TTCCTATCTTATTTAGTACTCCCTCTG 57.411 37.037 0.00 0.00 0.00 3.35
2943 3103 8.734763 TCCTATCTTATTTAGTACTCCCTCTGT 58.265 37.037 0.00 0.00 0.00 3.41
2948 3108 9.765295 TCTTATTTAGTACTCCCTCTGTAAACT 57.235 33.333 0.00 0.00 0.00 2.66
2959 3119 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
2960 3120 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
2961 3121 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
2962 3122 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
2963 3123 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
2980 3140 9.570488 AAGAGCGTTTAGATTACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
2981 3141 8.954350 AGAGCGTTTAGATTACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
2982 3142 9.733219 GAGCGTTTAGATTACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
2983 3143 9.733219 AGCGTTTAGATTACTAAAGTAGTGATC 57.267 33.333 10.62 10.62 46.38 2.92
3011 3171 9.490379 AAATGCTCTTATATTAGTTTACGGAGG 57.510 33.333 0.00 0.00 0.00 4.30
3012 3172 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
3013 3173 6.779049 TGCTCTTATATTAGTTTACGGAGGGA 59.221 38.462 0.00 0.00 0.00 4.20
3014 3174 7.039923 TGCTCTTATATTAGTTTACGGAGGGAG 60.040 40.741 0.00 0.00 0.00 4.30
3015 3175 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
3016 3176 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
3087 3247 4.995124 AGTTATGCAGTAACCACTACTCG 58.005 43.478 12.51 0.00 43.02 4.18
3192 3353 5.553290 GTCTTTCAGATAAGACCAAAGCC 57.447 43.478 11.55 0.00 45.27 4.35
3241 3527 6.017192 TGTCCAGGTCTCAAGTAAAGACTAT 58.983 40.000 3.55 0.00 42.28 2.12
3364 3650 2.555227 CCCTATTTCACTTGTGGCACCT 60.555 50.000 16.26 0.00 0.00 4.00
3602 3888 9.565090 TGTCTTCTATGCATCATTAGCTATTTT 57.435 29.630 0.19 0.00 0.00 1.82
3731 4017 1.001631 TAGCCCTGCTACAGCTCCA 59.998 57.895 2.44 0.00 40.44 3.86
3881 4168 4.463539 TCATGGTGAATTTGCAGCTTATGT 59.536 37.500 0.00 0.00 37.20 2.29
4001 4291 6.071896 ACAGAGTAGGGTTAGTACGGTTAAAC 60.072 42.308 0.00 0.00 0.00 2.01
4002 4292 6.151817 CAGAGTAGGGTTAGTACGGTTAAACT 59.848 42.308 0.00 0.00 0.00 2.66
4003 4293 7.336931 CAGAGTAGGGTTAGTACGGTTAAACTA 59.663 40.741 0.00 0.00 0.00 2.24
4004 4294 7.888546 AGAGTAGGGTTAGTACGGTTAAACTAA 59.111 37.037 0.00 0.00 36.18 2.24
4005 4295 8.417273 AGTAGGGTTAGTACGGTTAAACTAAA 57.583 34.615 4.11 0.00 39.28 1.85
4351 4653 7.158021 TCCAATGTTTTGCCACTAATTAAAGG 58.842 34.615 0.00 0.00 0.00 3.11
4419 4721 0.520404 AAGAAGCTGTGAAGCATGCG 59.480 50.000 13.01 0.00 37.25 4.73
4812 5115 5.351465 TGCTGTTTTATCATCCTTCGAGAAC 59.649 40.000 0.00 0.00 0.00 3.01
5064 5373 8.132995 ACTCAAACACATGATGCATATGTAATG 58.867 33.333 16.39 15.01 29.63 1.90
5074 5383 7.083230 TGATGCATATGTAATGGTAAATTGCG 58.917 34.615 0.00 0.00 0.00 4.85
5252 5561 5.178797 TGCTACCAGATTTCTGAAACTAGC 58.821 41.667 9.15 12.11 46.59 3.42
5394 5703 2.503895 CTTTCCAAGCCCACTGATCT 57.496 50.000 0.00 0.00 0.00 2.75
5395 5704 2.089980 CTTTCCAAGCCCACTGATCTG 58.910 52.381 0.00 0.00 0.00 2.90
5396 5705 1.361204 TTCCAAGCCCACTGATCTGA 58.639 50.000 6.60 0.00 0.00 3.27
5397 5706 1.588239 TCCAAGCCCACTGATCTGAT 58.412 50.000 6.60 0.00 0.00 2.90
5398 5707 1.487976 TCCAAGCCCACTGATCTGATC 59.512 52.381 10.72 10.72 0.00 2.92
5399 5708 1.476471 CCAAGCCCACTGATCTGATCC 60.476 57.143 14.71 0.00 0.00 3.36
5400 5709 0.467384 AAGCCCACTGATCTGATCCG 59.533 55.000 14.71 10.97 0.00 4.18
5401 5710 1.596477 GCCCACTGATCTGATCCGC 60.596 63.158 14.71 5.36 0.00 5.54
5402 5711 1.070445 CCCACTGATCTGATCCGCC 59.930 63.158 14.71 0.00 0.00 6.13
5403 5712 1.300465 CCACTGATCTGATCCGCCG 60.300 63.158 14.71 4.10 0.00 6.46
5404 5713 1.300465 CACTGATCTGATCCGCCGG 60.300 63.158 14.71 0.00 0.00 6.13
5405 5714 1.758514 ACTGATCTGATCCGCCGGT 60.759 57.895 14.71 0.00 0.00 5.28
5492 5815 3.196469 TGTAGCTCTTGGGAACTCATCAG 59.804 47.826 0.00 0.00 0.00 2.90
5493 5816 1.065564 AGCTCTTGGGAACTCATCAGC 60.066 52.381 0.00 0.00 0.00 4.26
5518 5841 5.104941 TGTTGTATGTCCTCCCTGATGTTAG 60.105 44.000 0.00 0.00 0.00 2.34
5530 5853 6.464222 TCCCTGATGTTAGTACTGAAACTTG 58.536 40.000 5.39 0.00 0.00 3.16
5531 5854 6.042781 TCCCTGATGTTAGTACTGAAACTTGT 59.957 38.462 5.39 0.00 0.00 3.16
5533 5856 6.089551 CCTGATGTTAGTACTGAAACTTGTCG 59.910 42.308 5.39 1.74 0.00 4.35
5537 5860 6.509656 TGTTAGTACTGAAACTTGTCGTCAT 58.490 36.000 5.39 0.00 0.00 3.06
5631 5965 4.299586 TGTGGTTGAGCAAGAATATGGA 57.700 40.909 0.00 0.00 0.00 3.41
5655 5989 7.012989 GGATCCCCATGTAGTAACATTGTTAAC 59.987 40.741 10.73 7.48 44.07 2.01
5670 6004 7.826690 ACATTGTTAACATGTGAAGTATTCCC 58.173 34.615 21.51 0.00 46.93 3.97
5671 6005 7.669722 ACATTGTTAACATGTGAAGTATTCCCT 59.330 33.333 21.51 0.61 46.93 4.20
5672 6006 7.681939 TTGTTAACATGTGAAGTATTCCCTC 57.318 36.000 9.56 0.00 46.93 4.30
5673 6007 6.177610 TGTTAACATGTGAAGTATTCCCTCC 58.822 40.000 3.59 0.00 46.93 4.30
5674 6008 3.543680 ACATGTGAAGTATTCCCTCCG 57.456 47.619 0.00 0.00 46.93 4.63
5675 6009 2.838202 ACATGTGAAGTATTCCCTCCGT 59.162 45.455 0.00 0.00 46.93 4.69
5676 6010 3.263425 ACATGTGAAGTATTCCCTCCGTT 59.737 43.478 0.00 0.00 46.93 4.44
5677 6011 3.604875 TGTGAAGTATTCCCTCCGTTC 57.395 47.619 0.00 0.00 46.93 3.95
5678 6012 2.235402 TGTGAAGTATTCCCTCCGTTCC 59.765 50.000 0.00 0.00 46.93 3.62
5679 6013 2.500504 GTGAAGTATTCCCTCCGTTCCT 59.499 50.000 0.00 0.00 46.93 3.36
5680 6014 3.703052 GTGAAGTATTCCCTCCGTTCCTA 59.297 47.826 0.00 0.00 46.93 2.94
5681 6015 4.161001 GTGAAGTATTCCCTCCGTTCCTAA 59.839 45.833 0.00 0.00 46.93 2.69
5682 6016 4.778958 TGAAGTATTCCCTCCGTTCCTAAA 59.221 41.667 0.00 0.00 46.93 1.85
5683 6017 5.427481 TGAAGTATTCCCTCCGTTCCTAAAT 59.573 40.000 0.00 0.00 46.93 1.40
5684 6018 6.612456 TGAAGTATTCCCTCCGTTCCTAAATA 59.388 38.462 0.00 0.00 46.93 1.40
5685 6019 7.291651 TGAAGTATTCCCTCCGTTCCTAAATAT 59.708 37.037 0.00 0.00 46.93 1.28
5686 6020 8.731591 AAGTATTCCCTCCGTTCCTAAATATA 57.268 34.615 0.00 0.00 0.00 0.86
5687 6021 8.731591 AGTATTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
5688 6022 8.813951 AGTATTCCCTCCGTTCCTAAATATAAG 58.186 37.037 0.00 0.00 0.00 1.73
5689 6023 7.628501 ATTCCCTCCGTTCCTAAATATAAGT 57.371 36.000 0.00 0.00 0.00 2.24
5690 6024 6.661304 TCCCTCCGTTCCTAAATATAAGTC 57.339 41.667 0.00 0.00 0.00 3.01
5691 6025 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
5692 6026 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
5693 6027 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
5694 6028 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
5695 6029 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
5710 6044 7.967890 AAGTCTTTTTAGCCATTTCAAATGG 57.032 32.000 23.16 23.16 41.99 3.16
5711 6045 7.301868 AGTCTTTTTAGCCATTTCAAATGGA 57.698 32.000 30.24 9.77 41.64 3.41
5712 6046 7.154656 AGTCTTTTTAGCCATTTCAAATGGAC 58.845 34.615 30.24 20.75 41.64 4.02
5713 6047 7.015584 AGTCTTTTTAGCCATTTCAAATGGACT 59.984 33.333 30.24 25.48 41.64 3.85
5714 6048 8.303876 GTCTTTTTAGCCATTTCAAATGGACTA 58.696 33.333 30.24 24.59 41.64 2.59
5715 6049 8.303876 TCTTTTTAGCCATTTCAAATGGACTAC 58.696 33.333 30.24 13.82 41.64 2.73
5716 6050 7.531857 TTTTAGCCATTTCAAATGGACTACA 57.468 32.000 30.24 19.55 41.64 2.74
5717 6051 7.531857 TTTAGCCATTTCAAATGGACTACAA 57.468 32.000 30.24 20.27 41.64 2.41
5718 6052 7.716799 TTAGCCATTTCAAATGGACTACAAT 57.283 32.000 30.24 10.12 41.64 2.71
5719 6053 8.815565 TTAGCCATTTCAAATGGACTACAATA 57.184 30.769 30.24 13.50 41.64 1.90
5720 6054 7.902920 AGCCATTTCAAATGGACTACAATAT 57.097 32.000 30.24 3.94 41.64 1.28
5721 6055 8.995027 AGCCATTTCAAATGGACTACAATATA 57.005 30.769 30.24 0.00 41.64 0.86
5722 6056 8.850156 AGCCATTTCAAATGGACTACAATATAC 58.150 33.333 30.24 9.62 41.64 1.47
5723 6057 7.803189 GCCATTTCAAATGGACTACAATATACG 59.197 37.037 30.24 1.58 41.64 3.06
5724 6058 8.289618 CCATTTCAAATGGACTACAATATACGG 58.710 37.037 23.10 0.00 41.64 4.02
5725 6059 9.051679 CATTTCAAATGGACTACAATATACGGA 57.948 33.333 1.73 0.00 0.00 4.69
5726 6060 9.793259 ATTTCAAATGGACTACAATATACGGAT 57.207 29.630 0.00 0.00 0.00 4.18
5768 6102 9.453572 TTGAAGTATAGATTCACTCATTTTGCT 57.546 29.630 0.76 0.00 36.44 3.91
5769 6103 9.102757 TGAAGTATAGATTCACTCATTTTGCTC 57.897 33.333 0.00 0.00 31.86 4.26
5770 6104 9.102757 GAAGTATAGATTCACTCATTTTGCTCA 57.897 33.333 0.00 0.00 0.00 4.26
5771 6105 8.659925 AGTATAGATTCACTCATTTTGCTCAG 57.340 34.615 0.00 0.00 0.00 3.35
5772 6106 8.263640 AGTATAGATTCACTCATTTTGCTCAGT 58.736 33.333 0.00 0.00 0.00 3.41
5773 6107 9.534565 GTATAGATTCACTCATTTTGCTCAGTA 57.465 33.333 0.00 0.00 0.00 2.74
5775 6109 7.317842 AGATTCACTCATTTTGCTCAGTATG 57.682 36.000 0.00 0.00 37.54 2.39
5776 6110 6.883217 AGATTCACTCATTTTGCTCAGTATGT 59.117 34.615 0.00 0.00 37.40 2.29
5777 6111 8.043113 AGATTCACTCATTTTGCTCAGTATGTA 58.957 33.333 0.00 0.00 37.40 2.29
5778 6112 7.601073 TTCACTCATTTTGCTCAGTATGTAG 57.399 36.000 0.00 0.00 37.40 2.74
5779 6113 6.701340 TCACTCATTTTGCTCAGTATGTAGT 58.299 36.000 0.00 0.00 37.40 2.73
5780 6114 6.813649 TCACTCATTTTGCTCAGTATGTAGTC 59.186 38.462 0.00 0.00 37.40 2.59
5781 6115 6.591448 CACTCATTTTGCTCAGTATGTAGTCA 59.409 38.462 0.00 0.00 37.40 3.41
5782 6116 6.591834 ACTCATTTTGCTCAGTATGTAGTCAC 59.408 38.462 0.00 0.00 37.40 3.67
5783 6117 6.701340 TCATTTTGCTCAGTATGTAGTCACT 58.299 36.000 0.00 0.00 37.40 3.41
5784 6118 7.161404 TCATTTTGCTCAGTATGTAGTCACTT 58.839 34.615 0.00 0.00 37.40 3.16
5785 6119 6.785488 TTTTGCTCAGTATGTAGTCACTTG 57.215 37.500 0.00 0.00 37.40 3.16
5786 6120 5.468540 TTGCTCAGTATGTAGTCACTTGT 57.531 39.130 0.00 0.00 37.40 3.16
5787 6121 5.468540 TGCTCAGTATGTAGTCACTTGTT 57.531 39.130 0.00 0.00 37.40 2.83
5788 6122 5.230182 TGCTCAGTATGTAGTCACTTGTTG 58.770 41.667 0.00 0.00 37.40 3.33
5789 6123 4.627467 GCTCAGTATGTAGTCACTTGTTGG 59.373 45.833 0.00 0.00 37.40 3.77
5790 6124 5.566826 GCTCAGTATGTAGTCACTTGTTGGA 60.567 44.000 0.00 0.00 37.40 3.53
5791 6125 6.413783 TCAGTATGTAGTCACTTGTTGGAA 57.586 37.500 0.00 0.00 37.40 3.53
5792 6126 7.004555 TCAGTATGTAGTCACTTGTTGGAAT 57.995 36.000 0.00 0.00 37.40 3.01
5793 6127 7.097192 TCAGTATGTAGTCACTTGTTGGAATC 58.903 38.462 0.00 0.00 37.40 2.52
5794 6128 7.039011 TCAGTATGTAGTCACTTGTTGGAATCT 60.039 37.037 0.00 0.00 37.40 2.40
5795 6129 7.276658 CAGTATGTAGTCACTTGTTGGAATCTC 59.723 40.741 0.00 0.00 0.00 2.75
5796 6130 5.808366 TGTAGTCACTTGTTGGAATCTCT 57.192 39.130 0.00 0.00 0.00 3.10
5797 6131 6.911250 TGTAGTCACTTGTTGGAATCTCTA 57.089 37.500 0.00 0.00 0.00 2.43
5798 6132 6.925211 TGTAGTCACTTGTTGGAATCTCTAG 58.075 40.000 0.00 0.00 0.00 2.43
5799 6133 6.719829 TGTAGTCACTTGTTGGAATCTCTAGA 59.280 38.462 0.00 0.00 0.00 2.43
5800 6134 6.672266 AGTCACTTGTTGGAATCTCTAGAA 57.328 37.500 0.00 0.00 0.00 2.10
5801 6135 7.067496 AGTCACTTGTTGGAATCTCTAGAAA 57.933 36.000 0.00 0.00 0.00 2.52
5802 6136 7.158021 AGTCACTTGTTGGAATCTCTAGAAAG 58.842 38.462 0.00 0.00 0.00 2.62
5803 6137 7.015682 AGTCACTTGTTGGAATCTCTAGAAAGA 59.984 37.037 0.00 0.00 0.00 2.52
5804 6138 7.821846 GTCACTTGTTGGAATCTCTAGAAAGAT 59.178 37.037 0.00 0.00 37.61 2.40
5805 6139 8.378565 TCACTTGTTGGAATCTCTAGAAAGATT 58.621 33.333 6.88 6.88 46.23 2.40
5806 6140 9.007901 CACTTGTTGGAATCTCTAGAAAGATTT 57.992 33.333 8.24 0.00 44.16 2.17
5820 6154 9.555727 TCTAGAAAGATTTATATTTGGGAACGG 57.444 33.333 0.00 0.00 0.00 4.44
5821 6155 9.555727 CTAGAAAGATTTATATTTGGGAACGGA 57.444 33.333 0.00 0.00 0.00 4.69
5822 6156 8.451908 AGAAAGATTTATATTTGGGAACGGAG 57.548 34.615 0.00 0.00 0.00 4.63
5823 6157 7.502561 AGAAAGATTTATATTTGGGAACGGAGG 59.497 37.037 0.00 0.00 0.00 4.30
5824 6158 6.509523 AGATTTATATTTGGGAACGGAGGA 57.490 37.500 0.00 0.00 0.00 3.71
5825 6159 6.906848 AGATTTATATTTGGGAACGGAGGAA 58.093 36.000 0.00 0.00 0.00 3.36
5826 6160 6.998673 AGATTTATATTTGGGAACGGAGGAAG 59.001 38.462 0.00 0.00 0.00 3.46
5827 6161 5.703730 TTATATTTGGGAACGGAGGAAGT 57.296 39.130 0.00 0.00 0.00 3.01
5828 6162 6.811634 TTATATTTGGGAACGGAGGAAGTA 57.188 37.500 0.00 0.00 0.00 2.24
5835 6169 2.298163 GGAACGGAGGAAGTAGTTGTCA 59.702 50.000 0.00 0.00 0.00 3.58
5905 6240 9.323985 TCTTAAAAACTTGGAAATGTTGAATGG 57.676 29.630 0.00 0.00 0.00 3.16
6014 6349 2.807045 GTGCTGAGCGACCGTCAG 60.807 66.667 0.00 13.59 43.77 3.51
6041 6376 1.132817 TCCTATCCTTGGGGCTCCTAC 60.133 57.143 3.07 0.00 0.00 3.18
6111 6488 4.219115 TGATGTAAACTCCCTTTGGCAAA 58.781 39.130 12.79 12.79 0.00 3.68
6213 6591 4.520492 ACTCCACTAGGAAAACATTTGCAG 59.480 41.667 0.00 0.00 45.19 4.41
6287 6665 3.849002 GCTGTGAGAGCCAGAATGA 57.151 52.632 0.00 0.00 42.54 2.57
6351 6735 2.709213 GCAAGAGTCTGGAGATGCTTT 58.291 47.619 0.00 0.00 0.00 3.51
6388 6772 3.978718 GCAGTTGCTATCAGAAATCCC 57.021 47.619 0.00 0.00 38.21 3.85
6389 6773 2.289002 GCAGTTGCTATCAGAAATCCCG 59.711 50.000 0.00 0.00 38.21 5.14
6390 6774 2.289002 CAGTTGCTATCAGAAATCCCGC 59.711 50.000 0.00 0.00 0.00 6.13
6391 6775 2.171448 AGTTGCTATCAGAAATCCCGCT 59.829 45.455 0.00 0.00 0.00 5.52
6393 6777 1.202687 TGCTATCAGAAATCCCGCTGG 60.203 52.381 0.00 0.00 33.05 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.522668 TCTGATGAAACAGTTGCGGG 58.477 50.000 0.00 0.00 38.79 6.13
1 2 3.005554 AGATCTGATGAAACAGTTGCGG 58.994 45.455 0.00 0.00 38.79 5.69
2 3 4.675190 AAGATCTGATGAAACAGTTGCG 57.325 40.909 0.00 0.00 38.79 4.85
3 4 6.005583 TGAAAGATCTGATGAAACAGTTGC 57.994 37.500 0.00 0.00 38.79 4.17
5 6 7.756395 ACATGAAAGATCTGATGAAACAGTT 57.244 32.000 13.82 0.00 38.79 3.16
6 7 8.853077 TTACATGAAAGATCTGATGAAACAGT 57.147 30.769 13.82 1.37 38.79 3.55
7 8 9.552114 GTTTACATGAAAGATCTGATGAAACAG 57.448 33.333 13.82 0.00 39.02 3.16
8 9 9.065798 TGTTTACATGAAAGATCTGATGAAACA 57.934 29.630 19.87 19.87 31.27 2.83
18 19 8.834465 AGCACATAGATGTTTACATGAAAGATC 58.166 33.333 0.00 9.27 44.46 2.75
19 20 8.743085 AGCACATAGATGTTTACATGAAAGAT 57.257 30.769 0.00 0.00 39.39 2.40
20 21 8.453320 CAAGCACATAGATGTTTACATGAAAGA 58.547 33.333 0.00 0.00 39.39 2.52
21 22 8.239314 ACAAGCACATAGATGTTTACATGAAAG 58.761 33.333 0.00 0.00 39.39 2.62
22 23 8.022550 CACAAGCACATAGATGTTTACATGAAA 58.977 33.333 0.00 0.00 39.39 2.69
23 24 7.174772 ACACAAGCACATAGATGTTTACATGAA 59.825 33.333 0.00 0.00 39.39 2.57
24 25 6.654582 ACACAAGCACATAGATGTTTACATGA 59.345 34.615 0.00 0.00 39.39 3.07
25 26 6.744082 CACACAAGCACATAGATGTTTACATG 59.256 38.462 0.00 0.00 39.39 3.21
26 27 6.654582 TCACACAAGCACATAGATGTTTACAT 59.345 34.615 0.00 0.00 39.39 2.29
27 28 5.994668 TCACACAAGCACATAGATGTTTACA 59.005 36.000 0.00 0.00 39.39 2.41
28 29 6.307155 GTCACACAAGCACATAGATGTTTAC 58.693 40.000 0.00 0.00 39.39 2.01
29 30 5.120053 CGTCACACAAGCACATAGATGTTTA 59.880 40.000 0.00 0.00 39.39 2.01
30 31 4.083855 CGTCACACAAGCACATAGATGTTT 60.084 41.667 0.00 0.00 39.39 2.83
31 32 3.433274 CGTCACACAAGCACATAGATGTT 59.567 43.478 0.00 0.00 39.39 2.71
32 33 2.995939 CGTCACACAAGCACATAGATGT 59.004 45.455 0.00 0.00 42.84 3.06
33 34 2.349580 CCGTCACACAAGCACATAGATG 59.650 50.000 0.00 0.00 0.00 2.90
34 35 2.028112 ACCGTCACACAAGCACATAGAT 60.028 45.455 0.00 0.00 0.00 1.98
35 36 1.343142 ACCGTCACACAAGCACATAGA 59.657 47.619 0.00 0.00 0.00 1.98
36 37 1.726791 GACCGTCACACAAGCACATAG 59.273 52.381 0.00 0.00 0.00 2.23
37 38 1.069358 TGACCGTCACACAAGCACATA 59.931 47.619 0.00 0.00 0.00 2.29
38 39 0.179059 TGACCGTCACACAAGCACAT 60.179 50.000 0.00 0.00 0.00 3.21
39 40 0.809636 CTGACCGTCACACAAGCACA 60.810 55.000 0.00 0.00 0.00 4.57
40 41 0.810031 ACTGACCGTCACACAAGCAC 60.810 55.000 0.00 0.00 0.00 4.40
41 42 0.809636 CACTGACCGTCACACAAGCA 60.810 55.000 0.00 0.00 0.00 3.91
42 43 1.498865 CCACTGACCGTCACACAAGC 61.499 60.000 0.00 0.00 0.00 4.01
43 44 0.104120 TCCACTGACCGTCACACAAG 59.896 55.000 0.00 0.00 0.00 3.16
44 45 0.179094 GTCCACTGACCGTCACACAA 60.179 55.000 0.00 0.00 35.34 3.33
45 46 1.440060 GTCCACTGACCGTCACACA 59.560 57.895 0.00 0.00 35.34 3.72
46 47 4.338327 GTCCACTGACCGTCACAC 57.662 61.111 0.00 0.00 35.34 3.82
54 55 1.048601 TGGTGAGAAGGTCCACTGAC 58.951 55.000 0.00 0.00 40.98 3.51
55 56 2.030027 ATGGTGAGAAGGTCCACTGA 57.970 50.000 0.00 0.00 33.91 3.41
56 57 2.224621 ACAATGGTGAGAAGGTCCACTG 60.225 50.000 0.00 0.00 35.09 3.66
57 58 2.039084 GACAATGGTGAGAAGGTCCACT 59.961 50.000 0.00 0.00 33.91 4.00
58 59 2.224523 TGACAATGGTGAGAAGGTCCAC 60.225 50.000 0.00 0.00 33.91 4.02
59 60 2.054021 TGACAATGGTGAGAAGGTCCA 58.946 47.619 0.00 0.00 35.64 4.02
60 61 2.859165 TGACAATGGTGAGAAGGTCC 57.141 50.000 0.00 0.00 0.00 4.46
61 62 4.154918 GTCATTGACAATGGTGAGAAGGTC 59.845 45.833 24.43 0.00 39.38 3.85
62 63 4.074970 GTCATTGACAATGGTGAGAAGGT 58.925 43.478 24.43 0.00 39.38 3.50
63 64 4.074259 TGTCATTGACAATGGTGAGAAGG 58.926 43.478 24.43 0.00 39.78 3.46
64 65 5.892160 ATGTCATTGACAATGGTGAGAAG 57.108 39.130 24.43 0.53 45.96 2.85
65 66 6.710278 TCTATGTCATTGACAATGGTGAGAA 58.290 36.000 24.43 4.82 45.96 2.87
66 67 6.155049 TCTCTATGTCATTGACAATGGTGAGA 59.845 38.462 24.43 22.19 45.96 3.27
67 68 6.343703 TCTCTATGTCATTGACAATGGTGAG 58.656 40.000 24.43 20.75 45.96 3.51
68 69 6.298441 TCTCTATGTCATTGACAATGGTGA 57.702 37.500 24.43 16.55 45.96 4.02
69 70 5.526479 CCTCTCTATGTCATTGACAATGGTG 59.474 44.000 24.43 14.92 45.96 4.17
70 71 5.190528 ACCTCTCTATGTCATTGACAATGGT 59.809 40.000 24.43 18.41 45.96 3.55
71 72 5.678583 ACCTCTCTATGTCATTGACAATGG 58.321 41.667 24.43 17.90 45.96 3.16
72 73 6.596888 ACAACCTCTCTATGTCATTGACAATG 59.403 38.462 22.44 20.15 45.96 2.82
73 74 6.596888 CACAACCTCTCTATGTCATTGACAAT 59.403 38.462 22.44 13.47 45.96 2.71
74 75 5.934043 CACAACCTCTCTATGTCATTGACAA 59.066 40.000 22.44 11.39 45.96 3.18
75 76 5.245977 TCACAACCTCTCTATGTCATTGACA 59.754 40.000 21.05 21.05 46.90 3.58
76 77 5.724328 TCACAACCTCTCTATGTCATTGAC 58.276 41.667 9.93 9.93 0.00 3.18
77 78 5.105187 CCTCACAACCTCTCTATGTCATTGA 60.105 44.000 0.00 0.00 0.00 2.57
78 79 5.114780 CCTCACAACCTCTCTATGTCATTG 58.885 45.833 0.00 0.00 0.00 2.82
79 80 4.383552 GCCTCACAACCTCTCTATGTCATT 60.384 45.833 0.00 0.00 0.00 2.57
80 81 3.133721 GCCTCACAACCTCTCTATGTCAT 59.866 47.826 0.00 0.00 0.00 3.06
81 82 2.497675 GCCTCACAACCTCTCTATGTCA 59.502 50.000 0.00 0.00 0.00 3.58
82 83 2.763448 AGCCTCACAACCTCTCTATGTC 59.237 50.000 0.00 0.00 0.00 3.06
83 84 2.763448 GAGCCTCACAACCTCTCTATGT 59.237 50.000 0.00 0.00 0.00 2.29
84 85 2.223688 CGAGCCTCACAACCTCTCTATG 60.224 54.545 0.00 0.00 0.00 2.23
85 86 2.028130 CGAGCCTCACAACCTCTCTAT 58.972 52.381 0.00 0.00 0.00 1.98
86 87 1.004394 TCGAGCCTCACAACCTCTCTA 59.996 52.381 0.00 0.00 0.00 2.43
87 88 0.251386 TCGAGCCTCACAACCTCTCT 60.251 55.000 0.00 0.00 0.00 3.10
88 89 0.172352 CTCGAGCCTCACAACCTCTC 59.828 60.000 0.00 0.00 0.00 3.20
89 90 1.254284 CCTCGAGCCTCACAACCTCT 61.254 60.000 6.99 0.00 0.00 3.69
90 91 1.216710 CCTCGAGCCTCACAACCTC 59.783 63.158 6.99 0.00 0.00 3.85
91 92 0.251653 TACCTCGAGCCTCACAACCT 60.252 55.000 6.99 0.00 0.00 3.50
92 93 0.108756 GTACCTCGAGCCTCACAACC 60.109 60.000 6.99 0.00 0.00 3.77
93 94 0.889306 AGTACCTCGAGCCTCACAAC 59.111 55.000 6.99 0.00 0.00 3.32
94 95 1.174783 GAGTACCTCGAGCCTCACAA 58.825 55.000 6.99 0.00 0.00 3.33
95 96 2.869636 GAGTACCTCGAGCCTCACA 58.130 57.895 6.99 0.00 0.00 3.58
105 106 3.950395 AGGTTGTACATACCGAGTACCTC 59.050 47.826 16.52 0.00 40.79 3.85
106 107 3.698040 CAGGTTGTACATACCGAGTACCT 59.302 47.826 16.52 11.92 40.79 3.08
107 108 3.445096 ACAGGTTGTACATACCGAGTACC 59.555 47.826 16.52 10.17 40.79 3.34
108 109 4.708726 ACAGGTTGTACATACCGAGTAC 57.291 45.455 16.52 0.00 40.69 2.73
109 110 5.012239 AGAACAGGTTGTACATACCGAGTA 58.988 41.667 18.60 0.00 40.69 2.59
110 111 3.830755 AGAACAGGTTGTACATACCGAGT 59.169 43.478 16.52 15.95 40.69 4.18
111 112 4.421948 GAGAACAGGTTGTACATACCGAG 58.578 47.826 16.52 15.52 40.69 4.63
112 113 3.119743 CGAGAACAGGTTGTACATACCGA 60.120 47.826 16.52 0.00 40.69 4.69
113 114 3.176708 CGAGAACAGGTTGTACATACCG 58.823 50.000 16.52 14.36 40.69 4.02
114 115 3.194116 TCCGAGAACAGGTTGTACATACC 59.806 47.826 15.41 15.41 35.85 2.73
115 116 4.445452 TCCGAGAACAGGTTGTACATAC 57.555 45.455 0.00 0.00 0.00 2.39
116 117 4.464951 ACATCCGAGAACAGGTTGTACATA 59.535 41.667 0.00 0.00 39.23 2.29
117 118 3.260884 ACATCCGAGAACAGGTTGTACAT 59.739 43.478 0.00 0.00 39.23 2.29
118 119 2.631062 ACATCCGAGAACAGGTTGTACA 59.369 45.455 0.00 0.00 39.23 2.90
119 120 3.251571 GACATCCGAGAACAGGTTGTAC 58.748 50.000 0.00 0.00 40.59 2.90
120 121 2.232941 GGACATCCGAGAACAGGTTGTA 59.767 50.000 0.00 0.00 40.59 2.41
121 122 1.002087 GGACATCCGAGAACAGGTTGT 59.998 52.381 0.00 0.00 42.49 3.32
122 123 1.276421 AGGACATCCGAGAACAGGTTG 59.724 52.381 0.00 0.00 42.08 3.77
123 124 1.550976 GAGGACATCCGAGAACAGGTT 59.449 52.381 0.00 0.00 42.08 3.50
124 125 1.187087 GAGGACATCCGAGAACAGGT 58.813 55.000 0.00 0.00 42.08 4.00
125 126 1.479709 AGAGGACATCCGAGAACAGG 58.520 55.000 0.00 0.00 42.08 4.00
126 127 3.017442 TGTAGAGGACATCCGAGAACAG 58.983 50.000 0.00 0.00 42.08 3.16
127 128 3.017442 CTGTAGAGGACATCCGAGAACA 58.983 50.000 0.00 0.00 42.08 3.18
128 129 2.223618 GCTGTAGAGGACATCCGAGAAC 60.224 54.545 0.00 0.00 42.08 3.01
129 130 2.025155 GCTGTAGAGGACATCCGAGAA 58.975 52.381 0.00 0.00 42.08 2.87
130 131 1.681538 GCTGTAGAGGACATCCGAGA 58.318 55.000 0.00 0.00 42.08 4.04
131 132 0.671251 GGCTGTAGAGGACATCCGAG 59.329 60.000 0.00 0.00 42.08 4.63
132 133 2.808598 GGCTGTAGAGGACATCCGA 58.191 57.895 0.00 0.00 42.08 4.55
134 135 3.898123 TGATTAGGCTGTAGAGGACATCC 59.102 47.826 0.00 0.00 43.59 3.51
135 136 5.163405 TGTTGATTAGGCTGTAGAGGACATC 60.163 44.000 0.00 0.00 37.45 3.06
136 137 4.716784 TGTTGATTAGGCTGTAGAGGACAT 59.283 41.667 0.00 0.00 37.45 3.06
137 138 4.081642 GTGTTGATTAGGCTGTAGAGGACA 60.082 45.833 0.00 0.00 36.35 4.02
138 139 4.081642 TGTGTTGATTAGGCTGTAGAGGAC 60.082 45.833 0.00 0.00 0.00 3.85
139 140 4.093743 TGTGTTGATTAGGCTGTAGAGGA 58.906 43.478 0.00 0.00 0.00 3.71
140 141 4.437239 CTGTGTTGATTAGGCTGTAGAGG 58.563 47.826 0.00 0.00 0.00 3.69
141 142 4.437239 CCTGTGTTGATTAGGCTGTAGAG 58.563 47.826 0.00 0.00 0.00 2.43
142 143 3.197766 CCCTGTGTTGATTAGGCTGTAGA 59.802 47.826 0.00 0.00 0.00 2.59
143 144 3.535561 CCCTGTGTTGATTAGGCTGTAG 58.464 50.000 0.00 0.00 0.00 2.74
144 145 2.355716 GCCCTGTGTTGATTAGGCTGTA 60.356 50.000 0.00 0.00 37.42 2.74
145 146 1.614317 GCCCTGTGTTGATTAGGCTGT 60.614 52.381 0.00 0.00 37.42 4.40
146 147 1.098050 GCCCTGTGTTGATTAGGCTG 58.902 55.000 0.00 0.00 37.42 4.85
147 148 0.698238 TGCCCTGTGTTGATTAGGCT 59.302 50.000 0.00 0.00 41.08 4.58
148 149 1.767759 ATGCCCTGTGTTGATTAGGC 58.232 50.000 0.00 0.00 40.87 3.93
149 150 3.129287 GTGAATGCCCTGTGTTGATTAGG 59.871 47.826 0.00 0.00 0.00 2.69
150 151 3.758023 TGTGAATGCCCTGTGTTGATTAG 59.242 43.478 0.00 0.00 0.00 1.73
151 152 3.505680 GTGTGAATGCCCTGTGTTGATTA 59.494 43.478 0.00 0.00 0.00 1.75
152 153 2.297033 GTGTGAATGCCCTGTGTTGATT 59.703 45.455 0.00 0.00 0.00 2.57
153 154 1.888512 GTGTGAATGCCCTGTGTTGAT 59.111 47.619 0.00 0.00 0.00 2.57
154 155 1.317613 GTGTGAATGCCCTGTGTTGA 58.682 50.000 0.00 0.00 0.00 3.18
155 156 0.314935 GGTGTGAATGCCCTGTGTTG 59.685 55.000 0.00 0.00 0.00 3.33
156 157 0.185901 AGGTGTGAATGCCCTGTGTT 59.814 50.000 0.00 0.00 0.00 3.32
157 158 1.064003 TAGGTGTGAATGCCCTGTGT 58.936 50.000 0.00 0.00 0.00 3.72
158 159 1.271325 TGTAGGTGTGAATGCCCTGTG 60.271 52.381 0.00 0.00 0.00 3.66
159 160 1.064003 TGTAGGTGTGAATGCCCTGT 58.936 50.000 0.00 0.00 0.00 4.00
160 161 1.453155 GTGTAGGTGTGAATGCCCTG 58.547 55.000 0.00 0.00 0.00 4.45
161 162 0.036388 CGTGTAGGTGTGAATGCCCT 60.036 55.000 0.00 0.00 0.00 5.19
162 163 0.036765 TCGTGTAGGTGTGAATGCCC 60.037 55.000 0.00 0.00 0.00 5.36
163 164 1.076332 GTCGTGTAGGTGTGAATGCC 58.924 55.000 0.00 0.00 0.00 4.40
164 165 1.726791 CAGTCGTGTAGGTGTGAATGC 59.273 52.381 0.00 0.00 0.00 3.56
165 166 2.337583 CCAGTCGTGTAGGTGTGAATG 58.662 52.381 0.00 0.00 0.00 2.67
166 167 1.337823 GCCAGTCGTGTAGGTGTGAAT 60.338 52.381 0.00 0.00 0.00 2.57
167 168 0.032952 GCCAGTCGTGTAGGTGTGAA 59.967 55.000 0.00 0.00 0.00 3.18
168 169 0.826256 AGCCAGTCGTGTAGGTGTGA 60.826 55.000 0.00 0.00 0.00 3.58
169 170 0.667487 CAGCCAGTCGTGTAGGTGTG 60.667 60.000 0.00 0.00 0.00 3.82
170 171 1.113517 ACAGCCAGTCGTGTAGGTGT 61.114 55.000 0.00 0.00 0.00 4.16
171 172 0.033504 AACAGCCAGTCGTGTAGGTG 59.966 55.000 0.00 0.00 0.00 4.00
172 173 0.317479 GAACAGCCAGTCGTGTAGGT 59.683 55.000 0.00 0.00 0.00 3.08
173 174 0.603569 AGAACAGCCAGTCGTGTAGG 59.396 55.000 0.00 0.00 0.00 3.18
174 175 1.542030 AGAGAACAGCCAGTCGTGTAG 59.458 52.381 0.00 0.00 0.00 2.74
175 176 1.269723 CAGAGAACAGCCAGTCGTGTA 59.730 52.381 0.00 0.00 0.00 2.90
176 177 0.032678 CAGAGAACAGCCAGTCGTGT 59.967 55.000 0.00 0.00 0.00 4.49
177 178 1.287730 GCAGAGAACAGCCAGTCGTG 61.288 60.000 0.00 0.00 0.00 4.35
178 179 1.005630 GCAGAGAACAGCCAGTCGT 60.006 57.895 0.00 0.00 0.00 4.34
179 180 1.739562 GGCAGAGAACAGCCAGTCG 60.740 63.158 0.00 0.00 45.97 4.18
180 181 4.292784 GGCAGAGAACAGCCAGTC 57.707 61.111 0.00 0.00 45.97 3.51
184 185 1.078567 CCTGAGGCAGAGAACAGCC 60.079 63.158 0.00 0.00 46.85 4.85
185 186 4.613929 CCTGAGGCAGAGAACAGC 57.386 61.111 0.00 0.00 32.44 4.40
196 197 3.333219 TGCAGGGGAAGCCTGAGG 61.333 66.667 0.00 0.00 37.47 3.86
197 198 2.045536 GTGCAGGGGAAGCCTGAG 60.046 66.667 0.00 0.00 37.47 3.35
198 199 2.459969 TTGTGCAGGGGAAGCCTGA 61.460 57.895 0.00 0.00 37.47 3.86
199 200 2.115910 TTGTGCAGGGGAAGCCTG 59.884 61.111 0.00 0.00 38.23 4.85
200 201 2.116125 GTTGTGCAGGGGAAGCCT 59.884 61.111 0.00 0.00 0.00 4.58
228 229 1.214424 AGGTAAACGGGGGATTGGATG 59.786 52.381 0.00 0.00 0.00 3.51
229 230 1.603634 AGGTAAACGGGGGATTGGAT 58.396 50.000 0.00 0.00 0.00 3.41
230 231 1.282738 GAAGGTAAACGGGGGATTGGA 59.717 52.381 0.00 0.00 0.00 3.53
231 232 1.004979 TGAAGGTAAACGGGGGATTGG 59.995 52.381 0.00 0.00 0.00 3.16
232 233 2.290705 ACTGAAGGTAAACGGGGGATTG 60.291 50.000 0.00 0.00 0.00 2.67
233 234 1.990327 ACTGAAGGTAAACGGGGGATT 59.010 47.619 0.00 0.00 0.00 3.01
234 235 1.665137 ACTGAAGGTAAACGGGGGAT 58.335 50.000 0.00 0.00 0.00 3.85
235 236 1.437397 AACTGAAGGTAAACGGGGGA 58.563 50.000 0.00 0.00 0.00 4.81
236 237 2.355412 CCTAACTGAAGGTAAACGGGGG 60.355 54.545 0.00 0.00 31.46 5.40
237 238 2.355412 CCCTAACTGAAGGTAAACGGGG 60.355 54.545 0.00 0.00 34.56 5.73
238 239 2.568509 TCCCTAACTGAAGGTAAACGGG 59.431 50.000 0.00 0.00 34.56 5.28
239 240 3.967332 TCCCTAACTGAAGGTAAACGG 57.033 47.619 0.00 0.00 34.56 4.44
240 241 5.127356 AGAGATCCCTAACTGAAGGTAAACG 59.873 44.000 0.00 0.00 34.56 3.60
241 242 6.547930 AGAGATCCCTAACTGAAGGTAAAC 57.452 41.667 0.00 0.00 34.56 2.01
242 243 6.839657 CCTAGAGATCCCTAACTGAAGGTAAA 59.160 42.308 0.00 0.00 34.56 2.01
243 244 6.374588 CCTAGAGATCCCTAACTGAAGGTAA 58.625 44.000 0.00 0.00 34.56 2.85
244 245 5.693321 GCCTAGAGATCCCTAACTGAAGGTA 60.693 48.000 0.00 0.00 34.56 3.08
245 246 4.810345 CCTAGAGATCCCTAACTGAAGGT 58.190 47.826 0.00 0.00 34.56 3.50
246 247 3.576550 GCCTAGAGATCCCTAACTGAAGG 59.423 52.174 0.00 0.00 36.30 3.46
247 248 4.479158 AGCCTAGAGATCCCTAACTGAAG 58.521 47.826 0.00 0.00 0.00 3.02
248 249 4.544564 AGCCTAGAGATCCCTAACTGAA 57.455 45.455 0.00 0.00 0.00 3.02
249 250 5.869540 ATAGCCTAGAGATCCCTAACTGA 57.130 43.478 0.00 0.00 0.00 3.41
250 251 5.592688 GCTATAGCCTAGAGATCCCTAACTG 59.407 48.000 14.13 0.00 34.31 3.16
251 252 5.762279 GCTATAGCCTAGAGATCCCTAACT 58.238 45.833 14.13 0.00 34.31 2.24
278 279 5.136068 TGTGGGATCAGAAGAGAGTAGAT 57.864 43.478 0.00 0.00 0.00 1.98
413 414 0.763035 AAACCCTACAGCCGAACAGT 59.237 50.000 0.00 0.00 0.00 3.55
421 422 1.296727 GCCGACATAAACCCTACAGC 58.703 55.000 0.00 0.00 0.00 4.40
439 440 2.855728 CTTGCCGATTTCAGTGCCGC 62.856 60.000 0.00 0.00 0.00 6.53
673 679 2.488545 GACCGTCATACGCCTATCTGAT 59.511 50.000 0.00 0.00 40.91 2.90
952 964 2.507110 TTTGAAGCGCTCTCGGAGGG 62.507 60.000 12.06 2.09 43.96 4.30
956 968 0.579156 GCTATTTGAAGCGCTCTCGG 59.421 55.000 12.06 0.00 35.95 4.63
1031 1051 0.889186 TCTTGGGAAAGCGTGGAAGC 60.889 55.000 0.00 0.00 37.41 3.86
1099 1119 1.961277 CCTCTTGCGTGGTGGTGAC 60.961 63.158 0.00 0.00 0.00 3.67
1140 1160 0.606604 ATGGCGGTTTCTGTAGTCGT 59.393 50.000 0.00 0.00 0.00 4.34
1141 1161 1.135083 AGATGGCGGTTTCTGTAGTCG 60.135 52.381 0.00 0.00 0.00 4.18
1142 1162 2.166664 AGAGATGGCGGTTTCTGTAGTC 59.833 50.000 0.00 0.00 0.00 2.59
1262 1296 1.868109 GCTGTAATCGATGTAGCGCCA 60.868 52.381 2.29 0.00 0.00 5.69
1415 1449 0.453390 GTAGGCGTACCGTAGTTGCT 59.547 55.000 5.22 0.00 42.76 3.91
1437 1471 2.605366 GCGAACTCCAAGAATCTAGTGC 59.395 50.000 0.00 0.00 0.00 4.40
1438 1472 3.862267 CAGCGAACTCCAAGAATCTAGTG 59.138 47.826 0.00 0.00 0.00 2.74
1439 1473 3.764434 TCAGCGAACTCCAAGAATCTAGT 59.236 43.478 0.00 0.00 0.00 2.57
1440 1474 4.377839 TCAGCGAACTCCAAGAATCTAG 57.622 45.455 0.00 0.00 0.00 2.43
1441 1475 5.127845 AGAATCAGCGAACTCCAAGAATCTA 59.872 40.000 0.00 0.00 0.00 1.98
1442 1476 3.902881 ATCAGCGAACTCCAAGAATCT 57.097 42.857 0.00 0.00 0.00 2.40
1454 1488 0.392461 CCCGGGAAAGAATCAGCGAA 60.392 55.000 18.48 0.00 0.00 4.70
1696 1745 1.657794 GCCGGAGCGATAGAACGTC 60.658 63.158 5.05 0.00 39.76 4.34
2202 2338 3.955543 TTCCGGGGGAATGCCTTGC 62.956 63.158 0.00 0.00 36.71 4.01
2203 2339 1.754234 CTTCCGGGGGAATGCCTTG 60.754 63.158 0.00 0.00 41.23 3.61
2204 2340 1.926426 CTCTTCCGGGGGAATGCCTT 61.926 60.000 0.00 0.00 41.23 4.35
2205 2341 2.286121 TCTTCCGGGGGAATGCCT 60.286 61.111 0.00 0.00 41.23 4.75
2206 2342 2.193248 CTCTTCCGGGGGAATGCC 59.807 66.667 0.00 0.00 41.23 4.40
2207 2343 2.193248 CCTCTTCCGGGGGAATGC 59.807 66.667 0.00 0.00 41.23 3.56
2470 2621 2.440980 GTTGCATCTGGAGGCCCC 60.441 66.667 0.00 0.03 37.30 5.80
2511 2662 6.204882 ACTCAAACCAGTAGCAATTCAACTAC 59.795 38.462 0.00 0.00 39.25 2.73
2577 2729 1.981256 AAAAGATGGACGGCAAGTGT 58.019 45.000 0.00 0.00 0.00 3.55
2700 2857 3.058639 GTCAAGTTTGGCTGTAGCAGAAG 60.059 47.826 6.18 0.00 44.36 2.85
2743 2901 7.466050 CGAAGCTACAAAATCTTTCCTACATCC 60.466 40.741 0.00 0.00 0.00 3.51
2934 3094 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2935 3095 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2936 3096 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2937 3097 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2954 3114 9.570488 CACTACTTTAGTAATCTAAACGCTCTT 57.430 33.333 0.00 0.00 40.05 2.85
2955 3115 8.954350 TCACTACTTTAGTAATCTAAACGCTCT 58.046 33.333 0.00 0.00 40.05 4.09
2956 3116 9.733219 ATCACTACTTTAGTAATCTAAACGCTC 57.267 33.333 0.00 0.00 40.05 5.03
2957 3117 9.733219 GATCACTACTTTAGTAATCTAAACGCT 57.267 33.333 0.00 0.00 40.05 5.07
2958 3118 9.733219 AGATCACTACTTTAGTAATCTAAACGC 57.267 33.333 0.00 0.00 40.05 4.84
2985 3145 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
2986 3146 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
2987 3147 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
2988 3148 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
2989 3149 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
2990 3150 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
2991 3151 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
2992 3152 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
2995 3155 9.819754 AATAGTACTCCCTCCGTAAACTAATAT 57.180 33.333 0.00 0.00 0.00 1.28
2997 3157 9.819754 ATAATAGTACTCCCTCCGTAAACTAAT 57.180 33.333 0.00 0.00 0.00 1.73
2998 3158 9.646522 AATAATAGTACTCCCTCCGTAAACTAA 57.353 33.333 0.00 0.00 0.00 2.24
2999 3159 9.646522 AAATAATAGTACTCCCTCCGTAAACTA 57.353 33.333 0.00 0.00 0.00 2.24
3000 3160 8.419442 CAAATAATAGTACTCCCTCCGTAAACT 58.581 37.037 0.00 0.00 0.00 2.66
3001 3161 8.200120 ACAAATAATAGTACTCCCTCCGTAAAC 58.800 37.037 0.00 0.00 0.00 2.01
3002 3162 8.199449 CACAAATAATAGTACTCCCTCCGTAAA 58.801 37.037 0.00 0.00 0.00 2.01
3003 3163 7.560991 TCACAAATAATAGTACTCCCTCCGTAA 59.439 37.037 0.00 0.00 0.00 3.18
3004 3164 7.062322 TCACAAATAATAGTACTCCCTCCGTA 58.938 38.462 0.00 0.00 0.00 4.02
3005 3165 5.895534 TCACAAATAATAGTACTCCCTCCGT 59.104 40.000 0.00 0.00 0.00 4.69
3006 3166 6.401047 TCACAAATAATAGTACTCCCTCCG 57.599 41.667 0.00 0.00 0.00 4.63
3007 3167 7.793036 ACTTCACAAATAATAGTACTCCCTCC 58.207 38.462 0.00 0.00 0.00 4.30
3008 3168 9.315525 GAACTTCACAAATAATAGTACTCCCTC 57.684 37.037 0.00 0.00 0.00 4.30
3009 3169 8.822805 TGAACTTCACAAATAATAGTACTCCCT 58.177 33.333 0.00 0.00 0.00 4.20
3010 3170 9.444600 TTGAACTTCACAAATAATAGTACTCCC 57.555 33.333 0.00 0.00 0.00 4.30
3087 3247 6.488344 AGGAAGAAAAGGATTCAGAGAAACAC 59.512 38.462 0.00 0.00 0.00 3.32
3192 3353 4.021016 ACTTCAGGGCTTCTACAAGTACAG 60.021 45.833 0.00 0.00 30.31 2.74
3881 4168 9.541143 TGTCTTGAATCGCAGATAACAATATAA 57.459 29.630 0.00 0.00 45.12 0.98
3891 4178 7.119699 TCAGTATTTTTGTCTTGAATCGCAGAT 59.880 33.333 0.00 0.00 45.12 2.90
4001 4291 6.016777 GCCAGTGAACCTATCCATGATTTTAG 60.017 42.308 0.00 0.00 0.00 1.85
4002 4292 5.827797 GCCAGTGAACCTATCCATGATTTTA 59.172 40.000 0.00 0.00 0.00 1.52
4003 4293 4.646492 GCCAGTGAACCTATCCATGATTTT 59.354 41.667 0.00 0.00 0.00 1.82
4004 4294 4.210331 GCCAGTGAACCTATCCATGATTT 58.790 43.478 0.00 0.00 0.00 2.17
4005 4295 3.202818 TGCCAGTGAACCTATCCATGATT 59.797 43.478 0.00 0.00 0.00 2.57
4351 4653 2.959507 AACAAAAGGAACAGTGTGGC 57.040 45.000 0.00 0.00 0.00 5.01
4419 4721 5.479306 TGTATACTGTGAGCCACTTCTTTC 58.521 41.667 4.17 0.00 35.11 2.62
4812 5115 0.815615 GCAGTAAAGCCATCTCCCCG 60.816 60.000 0.00 0.00 0.00 5.73
4991 5294 8.140628 TCATTTCAGCATTTAACAAAGCTACAA 58.859 29.630 0.00 0.00 35.19 2.41
5064 5373 2.097466 CAGACCCATCACGCAATTTACC 59.903 50.000 0.00 0.00 0.00 2.85
5074 5383 2.679837 CACATAAGTGCAGACCCATCAC 59.320 50.000 0.00 0.00 39.21 3.06
5252 5561 3.887621 TGGTTAATCCTTCTGGAGTCG 57.112 47.619 0.00 0.00 46.91 4.18
5387 5696 1.330655 AACCGGCGGATCAGATCAGT 61.331 55.000 35.78 1.87 0.00 3.41
5394 5703 1.375396 CAGTTCAACCGGCGGATCA 60.375 57.895 35.78 3.25 0.00 2.92
5395 5704 0.672401 TTCAGTTCAACCGGCGGATC 60.672 55.000 35.78 16.53 0.00 3.36
5396 5705 0.673644 CTTCAGTTCAACCGGCGGAT 60.674 55.000 35.78 20.37 0.00 4.18
5397 5706 1.301401 CTTCAGTTCAACCGGCGGA 60.301 57.895 35.78 7.50 0.00 5.54
5398 5707 0.882927 TTCTTCAGTTCAACCGGCGG 60.883 55.000 27.06 27.06 0.00 6.13
5399 5708 1.128692 GATTCTTCAGTTCAACCGGCG 59.871 52.381 0.00 0.00 0.00 6.46
5400 5709 2.095718 GTGATTCTTCAGTTCAACCGGC 60.096 50.000 0.00 0.00 30.85 6.13
5401 5710 3.187227 CAGTGATTCTTCAGTTCAACCGG 59.813 47.826 0.00 0.00 33.07 5.28
5402 5711 4.058124 TCAGTGATTCTTCAGTTCAACCG 58.942 43.478 0.00 0.00 33.07 4.44
5403 5712 5.702670 TGATCAGTGATTCTTCAGTTCAACC 59.297 40.000 7.16 0.00 33.07 3.77
5404 5713 6.791887 TGATCAGTGATTCTTCAGTTCAAC 57.208 37.500 7.16 0.00 33.07 3.18
5405 5714 7.806409 TTTGATCAGTGATTCTTCAGTTCAA 57.194 32.000 7.16 1.59 33.35 2.69
5492 5815 1.555075 TCAGGGAGGACATACAACAGC 59.445 52.381 0.00 0.00 0.00 4.40
5493 5816 3.198635 ACATCAGGGAGGACATACAACAG 59.801 47.826 0.00 0.00 0.00 3.16
5518 5841 4.304110 TCCATGACGACAAGTTTCAGTAC 58.696 43.478 0.00 0.00 0.00 2.73
5530 5853 1.066143 ACCAACAGGATCCATGACGAC 60.066 52.381 15.82 0.00 0.00 4.34
5531 5854 1.275666 ACCAACAGGATCCATGACGA 58.724 50.000 15.82 0.00 0.00 4.20
5533 5856 2.094675 CCAACCAACAGGATCCATGAC 58.905 52.381 15.82 0.00 0.00 3.06
5537 5860 0.038166 GAGCCAACCAACAGGATCCA 59.962 55.000 15.82 0.00 34.32 3.41
5631 5965 7.406916 TGTTAACAATGTTACTACATGGGGAT 58.593 34.615 5.64 0.00 44.14 3.85
5655 5989 3.543680 ACGGAGGGAATACTTCACATG 57.456 47.619 0.00 0.00 34.83 3.21
5666 6000 6.842807 AGACTTATATTTAGGAACGGAGGGAA 59.157 38.462 0.00 0.00 0.00 3.97
5667 6001 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
5668 6002 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
5669 6003 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
5684 6018 9.657419 CCATTTGAAATGGCTAAAAAGACTTAT 57.343 29.630 22.59 0.00 31.75 1.73
5685 6019 8.865090 TCCATTTGAAATGGCTAAAAAGACTTA 58.135 29.630 27.78 6.99 39.01 2.24
5686 6020 7.657354 GTCCATTTGAAATGGCTAAAAAGACTT 59.343 33.333 27.78 0.00 39.01 3.01
5687 6021 7.015584 AGTCCATTTGAAATGGCTAAAAAGACT 59.984 33.333 27.78 20.38 39.01 3.24
5688 6022 7.154656 AGTCCATTTGAAATGGCTAAAAAGAC 58.845 34.615 27.78 18.76 39.01 3.01
5689 6023 7.301868 AGTCCATTTGAAATGGCTAAAAAGA 57.698 32.000 27.78 8.99 39.01 2.52
5690 6024 8.087750 TGTAGTCCATTTGAAATGGCTAAAAAG 58.912 33.333 27.78 6.20 39.01 2.27
5691 6025 7.957002 TGTAGTCCATTTGAAATGGCTAAAAA 58.043 30.769 27.78 17.61 39.01 1.94
5692 6026 7.531857 TGTAGTCCATTTGAAATGGCTAAAA 57.468 32.000 27.78 19.40 39.01 1.52
5693 6027 7.531857 TTGTAGTCCATTTGAAATGGCTAAA 57.468 32.000 27.78 22.56 39.01 1.85
5694 6028 7.716799 ATTGTAGTCCATTTGAAATGGCTAA 57.283 32.000 27.78 19.40 39.01 3.09
5695 6029 8.995027 ATATTGTAGTCCATTTGAAATGGCTA 57.005 30.769 27.78 25.72 39.01 3.93
5696 6030 7.902920 ATATTGTAGTCCATTTGAAATGGCT 57.097 32.000 27.78 26.55 39.01 4.75
5697 6031 7.803189 CGTATATTGTAGTCCATTTGAAATGGC 59.197 37.037 27.78 22.22 39.01 4.40
5698 6032 8.289618 CCGTATATTGTAGTCCATTTGAAATGG 58.710 37.037 26.94 26.94 40.48 3.16
5699 6033 9.051679 TCCGTATATTGTAGTCCATTTGAAATG 57.948 33.333 10.84 10.84 0.00 2.32
5700 6034 9.793259 ATCCGTATATTGTAGTCCATTTGAAAT 57.207 29.630 0.00 0.00 0.00 2.17
5742 6076 9.453572 AGCAAAATGAGTGAATCTATACTTCAA 57.546 29.630 0.00 0.00 34.59 2.69
5743 6077 9.102757 GAGCAAAATGAGTGAATCTATACTTCA 57.897 33.333 0.00 0.00 0.00 3.02
5744 6078 9.102757 TGAGCAAAATGAGTGAATCTATACTTC 57.897 33.333 0.00 0.00 0.00 3.01
5745 6079 9.107177 CTGAGCAAAATGAGTGAATCTATACTT 57.893 33.333 0.00 0.00 0.00 2.24
5746 6080 8.263640 ACTGAGCAAAATGAGTGAATCTATACT 58.736 33.333 0.00 0.00 0.00 2.12
5747 6081 8.430801 ACTGAGCAAAATGAGTGAATCTATAC 57.569 34.615 0.00 0.00 0.00 1.47
5749 6083 9.053840 CATACTGAGCAAAATGAGTGAATCTAT 57.946 33.333 0.00 0.00 0.00 1.98
5750 6084 8.043113 ACATACTGAGCAAAATGAGTGAATCTA 58.957 33.333 0.00 0.00 0.00 1.98
5751 6085 6.883217 ACATACTGAGCAAAATGAGTGAATCT 59.117 34.615 0.00 0.00 0.00 2.40
5752 6086 7.081526 ACATACTGAGCAAAATGAGTGAATC 57.918 36.000 0.00 0.00 0.00 2.52
5753 6087 7.826252 ACTACATACTGAGCAAAATGAGTGAAT 59.174 33.333 0.00 0.00 0.00 2.57
5754 6088 7.161404 ACTACATACTGAGCAAAATGAGTGAA 58.839 34.615 0.00 0.00 0.00 3.18
5755 6089 6.701340 ACTACATACTGAGCAAAATGAGTGA 58.299 36.000 0.00 0.00 0.00 3.41
5756 6090 6.591448 TGACTACATACTGAGCAAAATGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
5757 6091 6.591834 GTGACTACATACTGAGCAAAATGAGT 59.408 38.462 0.00 0.00 0.00 3.41
5758 6092 6.815641 AGTGACTACATACTGAGCAAAATGAG 59.184 38.462 0.00 0.00 0.00 2.90
5759 6093 6.701340 AGTGACTACATACTGAGCAAAATGA 58.299 36.000 0.00 0.00 0.00 2.57
5760 6094 6.974932 AGTGACTACATACTGAGCAAAATG 57.025 37.500 0.00 0.00 0.00 2.32
5761 6095 6.936900 ACAAGTGACTACATACTGAGCAAAAT 59.063 34.615 0.00 0.00 0.00 1.82
5762 6096 6.288294 ACAAGTGACTACATACTGAGCAAAA 58.712 36.000 0.00 0.00 0.00 2.44
5763 6097 5.853936 ACAAGTGACTACATACTGAGCAAA 58.146 37.500 0.00 0.00 0.00 3.68
5764 6098 5.468540 ACAAGTGACTACATACTGAGCAA 57.531 39.130 0.00 0.00 0.00 3.91
5765 6099 5.230182 CAACAAGTGACTACATACTGAGCA 58.770 41.667 0.00 0.00 0.00 4.26
5766 6100 4.627467 CCAACAAGTGACTACATACTGAGC 59.373 45.833 0.00 0.00 0.00 4.26
5767 6101 6.025749 TCCAACAAGTGACTACATACTGAG 57.974 41.667 0.00 0.00 0.00 3.35
5768 6102 6.413783 TTCCAACAAGTGACTACATACTGA 57.586 37.500 0.00 0.00 0.00 3.41
5769 6103 7.099764 AGATTCCAACAAGTGACTACATACTG 58.900 38.462 0.00 0.00 0.00 2.74
5770 6104 7.179338 AGAGATTCCAACAAGTGACTACATACT 59.821 37.037 0.00 0.00 0.00 2.12
5771 6105 7.324178 AGAGATTCCAACAAGTGACTACATAC 58.676 38.462 0.00 0.00 0.00 2.39
5772 6106 7.482169 AGAGATTCCAACAAGTGACTACATA 57.518 36.000 0.00 0.00 0.00 2.29
5773 6107 6.365970 AGAGATTCCAACAAGTGACTACAT 57.634 37.500 0.00 0.00 0.00 2.29
5774 6108 5.808366 AGAGATTCCAACAAGTGACTACA 57.192 39.130 0.00 0.00 0.00 2.74
5775 6109 7.159322 TCTAGAGATTCCAACAAGTGACTAC 57.841 40.000 0.00 0.00 0.00 2.73
5776 6110 7.776618 TTCTAGAGATTCCAACAAGTGACTA 57.223 36.000 0.00 0.00 0.00 2.59
5777 6111 6.672266 TTCTAGAGATTCCAACAAGTGACT 57.328 37.500 0.00 0.00 0.00 3.41
5778 6112 7.155328 TCTTTCTAGAGATTCCAACAAGTGAC 58.845 38.462 0.00 0.00 0.00 3.67
5779 6113 7.303182 TCTTTCTAGAGATTCCAACAAGTGA 57.697 36.000 0.00 0.00 0.00 3.41
5780 6114 8.558973 AATCTTTCTAGAGATTCCAACAAGTG 57.441 34.615 2.20 0.00 41.33 3.16
5794 6128 9.555727 CCGTTCCCAAATATAAATCTTTCTAGA 57.444 33.333 0.00 0.00 34.21 2.43
5795 6129 9.555727 TCCGTTCCCAAATATAAATCTTTCTAG 57.444 33.333 0.00 0.00 0.00 2.43
5796 6130 9.555727 CTCCGTTCCCAAATATAAATCTTTCTA 57.444 33.333 0.00 0.00 0.00 2.10
5797 6131 7.502561 CCTCCGTTCCCAAATATAAATCTTTCT 59.497 37.037 0.00 0.00 0.00 2.52
5798 6132 7.501225 TCCTCCGTTCCCAAATATAAATCTTTC 59.499 37.037 0.00 0.00 0.00 2.62
5799 6133 7.351166 TCCTCCGTTCCCAAATATAAATCTTT 58.649 34.615 0.00 0.00 0.00 2.52
5800 6134 6.906848 TCCTCCGTTCCCAAATATAAATCTT 58.093 36.000 0.00 0.00 0.00 2.40
5801 6135 6.509523 TCCTCCGTTCCCAAATATAAATCT 57.490 37.500 0.00 0.00 0.00 2.40
5802 6136 6.771267 ACTTCCTCCGTTCCCAAATATAAATC 59.229 38.462 0.00 0.00 0.00 2.17
5803 6137 6.669631 ACTTCCTCCGTTCCCAAATATAAAT 58.330 36.000 0.00 0.00 0.00 1.40
5804 6138 6.069705 ACTTCCTCCGTTCCCAAATATAAA 57.930 37.500 0.00 0.00 0.00 1.40
5805 6139 5.703730 ACTTCCTCCGTTCCCAAATATAA 57.296 39.130 0.00 0.00 0.00 0.98
5806 6140 5.901276 ACTACTTCCTCCGTTCCCAAATATA 59.099 40.000 0.00 0.00 0.00 0.86
5807 6141 4.720273 ACTACTTCCTCCGTTCCCAAATAT 59.280 41.667 0.00 0.00 0.00 1.28
5808 6142 4.098894 ACTACTTCCTCCGTTCCCAAATA 58.901 43.478 0.00 0.00 0.00 1.40
5809 6143 2.910977 ACTACTTCCTCCGTTCCCAAAT 59.089 45.455 0.00 0.00 0.00 2.32
5810 6144 2.332117 ACTACTTCCTCCGTTCCCAAA 58.668 47.619 0.00 0.00 0.00 3.28
5811 6145 2.019807 ACTACTTCCTCCGTTCCCAA 57.980 50.000 0.00 0.00 0.00 4.12
5812 6146 1.621814 CAACTACTTCCTCCGTTCCCA 59.378 52.381 0.00 0.00 0.00 4.37
5813 6147 1.622312 ACAACTACTTCCTCCGTTCCC 59.378 52.381 0.00 0.00 0.00 3.97
5814 6148 2.298163 TGACAACTACTTCCTCCGTTCC 59.702 50.000 0.00 0.00 0.00 3.62
5815 6149 3.655276 TGACAACTACTTCCTCCGTTC 57.345 47.619 0.00 0.00 0.00 3.95
5816 6150 3.306780 CCATGACAACTACTTCCTCCGTT 60.307 47.826 0.00 0.00 0.00 4.44
5817 6151 2.233922 CCATGACAACTACTTCCTCCGT 59.766 50.000 0.00 0.00 0.00 4.69
5818 6152 2.233922 ACCATGACAACTACTTCCTCCG 59.766 50.000 0.00 0.00 0.00 4.63
5819 6153 3.983044 ACCATGACAACTACTTCCTCC 57.017 47.619 0.00 0.00 0.00 4.30
5820 6154 4.160626 AGCTACCATGACAACTACTTCCTC 59.839 45.833 0.00 0.00 0.00 3.71
5821 6155 4.097418 AGCTACCATGACAACTACTTCCT 58.903 43.478 0.00 0.00 0.00 3.36
5822 6156 4.434520 GAGCTACCATGACAACTACTTCC 58.565 47.826 0.00 0.00 0.00 3.46
5823 6157 4.160626 AGGAGCTACCATGACAACTACTTC 59.839 45.833 0.00 0.00 42.04 3.01
5824 6158 4.097418 AGGAGCTACCATGACAACTACTT 58.903 43.478 0.00 0.00 42.04 2.24
5825 6159 3.702045 GAGGAGCTACCATGACAACTACT 59.298 47.826 0.00 0.00 42.04 2.57
5826 6160 3.489398 CGAGGAGCTACCATGACAACTAC 60.489 52.174 0.00 0.00 42.04 2.73
5827 6161 2.688446 CGAGGAGCTACCATGACAACTA 59.312 50.000 0.00 0.00 42.04 2.24
5828 6162 1.478510 CGAGGAGCTACCATGACAACT 59.521 52.381 0.00 0.00 42.04 3.16
5835 6169 3.532542 GCTTAAAACGAGGAGCTACCAT 58.467 45.455 0.00 0.00 42.04 3.55
5905 6240 1.012841 CTTTGCCCGAATGAGCTCTC 58.987 55.000 16.19 3.94 0.00 3.20
5963 6298 1.420138 ACCGTGGACTGACAGGAAAAT 59.580 47.619 7.51 0.00 0.00 1.82
5968 6303 1.961277 GCAACCGTGGACTGACAGG 60.961 63.158 7.51 0.00 0.00 4.00
6014 6349 2.687014 GCCCCAAGGATAGGAAAAGGTC 60.687 54.545 0.00 0.00 33.47 3.85
6041 6376 1.737793 GAATAGGACGGTTGGCTGTTG 59.262 52.381 0.00 0.00 33.67 3.33
6111 6488 4.996758 GCAGTTAAATGGGCAAATTTGTCT 59.003 37.500 21.36 5.20 32.16 3.41
6213 6591 6.601741 TTTGAATCCAAAATCAACTTGCAC 57.398 33.333 0.00 0.00 39.15 4.57
6287 6665 2.222027 GTGCTGCAAGTTCTTACCAGT 58.778 47.619 2.77 0.00 35.30 4.00
6351 6735 0.472044 TGCTGTGCCCTCAGTGTTTA 59.528 50.000 0.00 0.00 37.70 2.01
6385 6769 0.183971 TGAAGGAAAAACCAGCGGGA 59.816 50.000 10.86 0.00 42.04 5.14
6388 6772 4.023193 ACTTATGTGAAGGAAAAACCAGCG 60.023 41.667 0.00 0.00 42.04 5.18
6389 6773 5.453567 ACTTATGTGAAGGAAAAACCAGC 57.546 39.130 0.00 0.00 42.04 4.85
6390 6774 7.277174 AGAACTTATGTGAAGGAAAAACCAG 57.723 36.000 0.00 0.00 42.04 4.00
6391 6775 6.264518 GGAGAACTTATGTGAAGGAAAAACCA 59.735 38.462 0.00 0.00 42.04 3.67
6393 6777 6.490381 AGGGAGAACTTATGTGAAGGAAAAAC 59.510 38.462 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.