Multiple sequence alignment - TraesCS6D01G343000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G343000 chr6D 100.000 5477 0 0 1 5477 441900746 441895270 0.000000e+00 10115.0
1 TraesCS6D01G343000 chr6D 96.739 92 3 0 2364 2455 385916938 385917029 2.640000e-33 154.0
2 TraesCS6D01G343000 chr6D 86.000 100 14 0 1205 1304 138904815 138904914 2.090000e-19 108.0
3 TraesCS6D01G343000 chr6A 95.110 2556 77 21 2447 4981 591266437 591263909 0.000000e+00 3984.0
4 TraesCS6D01G343000 chr6A 86.498 911 68 24 1491 2368 591267321 591266433 0.000000e+00 950.0
5 TraesCS6D01G343000 chr6A 88.609 676 19 24 788 1447 591267956 591267323 0.000000e+00 769.0
6 TraesCS6D01G343000 chr6A 83.969 524 50 14 35 543 591268619 591268115 6.420000e-129 472.0
7 TraesCS6D01G343000 chr6A 90.116 172 9 4 5313 5476 591263808 591263637 3.320000e-52 217.0
8 TraesCS6D01G343000 chr6A 91.946 149 9 2 589 736 591268112 591267966 7.190000e-49 206.0
9 TraesCS6D01G343000 chr6A 80.233 172 26 3 227 390 574399371 574399200 7.450000e-24 122.0
10 TraesCS6D01G343000 chr6A 86.000 100 14 0 1205 1304 181563849 181563948 2.090000e-19 108.0
11 TraesCS6D01G343000 chr6A 87.097 93 12 0 298 390 182324381 182324289 7.500000e-19 106.0
12 TraesCS6D01G343000 chr6B 94.303 2598 93 22 2447 5013 667898651 667896078 0.000000e+00 3927.0
13 TraesCS6D01G343000 chr6B 88.859 1122 62 34 619 1699 667900449 667899350 0.000000e+00 1321.0
14 TraesCS6D01G343000 chr6B 91.463 656 28 15 1729 2368 667899290 667898647 0.000000e+00 876.0
15 TraesCS6D01G343000 chr6B 88.535 157 10 4 5328 5476 667895832 667895676 3.370000e-42 183.0
16 TraesCS6D01G343000 chr6B 96.809 94 2 1 2365 2458 42774573 42774665 7.350000e-34 156.0
17 TraesCS6D01G343000 chr6B 80.117 171 31 1 220 390 647868436 647868269 2.070000e-24 124.0
18 TraesCS6D01G343000 chr6B 95.238 42 1 1 412 452 667898973 667898932 1.270000e-06 65.8
19 TraesCS6D01G343000 chr3B 96.078 357 13 1 2447 2802 242895955 242895599 1.020000e-161 580.0
20 TraesCS6D01G343000 chr3B 81.277 235 18 8 1992 2220 242896217 242896003 3.390000e-37 167.0
21 TraesCS6D01G343000 chr3B 91.743 109 6 3 2349 2456 668836864 668836970 1.230000e-31 148.0
22 TraesCS6D01G343000 chr3B 100.000 34 0 0 412 445 242896172 242896139 4.580000e-06 63.9
23 TraesCS6D01G343000 chr2D 100.000 88 0 0 2366 2453 412382518 412382605 4.390000e-36 163.0
24 TraesCS6D01G343000 chr2D 96.809 94 1 1 2360 2451 79050999 79051092 7.350000e-34 156.0
25 TraesCS6D01G343000 chr2D 84.694 98 15 0 293 390 638155599 638155696 1.260000e-16 99.0
26 TraesCS6D01G343000 chr2D 75.269 186 31 7 220 390 423604485 423604300 2.120000e-09 75.0
27 TraesCS6D01G343000 chr1A 84.568 162 21 2 5124 5281 366364845 366364684 2.040000e-34 158.0
28 TraesCS6D01G343000 chr1A 84.314 102 16 0 289 390 486897970 486897869 3.490000e-17 100.0
29 TraesCS6D01G343000 chr4D 96.774 93 3 0 2359 2451 14928763 14928671 7.350000e-34 156.0
30 TraesCS6D01G343000 chr4D 91.111 45 2 2 229 271 304424694 304424650 5.920000e-05 60.2
31 TraesCS6D01G343000 chr5D 95.000 100 2 2 2356 2455 475843408 475843312 2.640000e-33 154.0
32 TraesCS6D01G343000 chr5D 91.743 109 6 3 2364 2470 181883338 181883445 1.230000e-31 148.0
33 TraesCS6D01G343000 chr5D 85.294 102 15 0 289 390 457652309 457652410 7.500000e-19 106.0
34 TraesCS6D01G343000 chr4A 92.233 103 8 0 2362 2464 733555184 733555082 4.420000e-31 147.0
35 TraesCS6D01G343000 chr3D 80.925 173 24 5 226 390 561491054 561491225 1.600000e-25 128.0
36 TraesCS6D01G343000 chr3D 91.111 90 8 0 1207 1296 363871932 363871843 7.450000e-24 122.0
37 TraesCS6D01G343000 chr3A 80.814 172 26 3 226 390 644817516 644817345 1.600000e-25 128.0
38 TraesCS6D01G343000 chr3A 85.124 121 17 1 1207 1327 485014668 485014549 7.450000e-24 122.0
39 TraesCS6D01G343000 chr3A 87.640 89 10 1 5122 5209 55215569 55215481 9.710000e-18 102.0
40 TraesCS6D01G343000 chr7A 87.736 106 13 0 1199 1304 567456848 567456743 2.070000e-24 124.0
41 TraesCS6D01G343000 chr7A 78.333 180 30 5 220 390 80569081 80568902 2.090000e-19 108.0
42 TraesCS6D01G343000 chr2A 80.000 180 27 5 220 390 542454115 542453936 2.070000e-24 124.0
43 TraesCS6D01G343000 chr2A 81.188 101 13 5 228 322 31006499 31006599 5.880000e-10 76.8
44 TraesCS6D01G343000 chr7D 86.239 109 15 0 1199 1307 500974630 500974522 9.640000e-23 119.0
45 TraesCS6D01G343000 chr7B 86.792 106 14 0 1199 1304 529958354 529958249 9.640000e-23 119.0
46 TraesCS6D01G343000 chr7B 86.170 94 11 2 297 390 559516514 559516423 3.490000e-17 100.0
47 TraesCS6D01G343000 chrUn 79.070 172 26 6 226 390 51215562 51215730 5.800000e-20 110.0
48 TraesCS6D01G343000 chr1D 84.848 99 14 1 290 388 445096488 445096585 1.260000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G343000 chr6D 441895270 441900746 5476 True 10115.000000 10115 100.000000 1 5477 1 chr6D.!!$R1 5476
1 TraesCS6D01G343000 chr6A 591263637 591268619 4982 True 1099.666667 3984 89.374667 35 5476 6 chr6A.!!$R3 5441
2 TraesCS6D01G343000 chr6B 667895676 667900449 4773 True 1274.560000 3927 91.679600 412 5476 5 chr6B.!!$R2 5064
3 TraesCS6D01G343000 chr3B 242895599 242896217 618 True 270.300000 580 92.451667 412 2802 3 chr3B.!!$R1 2390

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 323 0.169672 TAGCGACGACTACAAGCACC 59.830 55.0 0.00 0.0 0.00 5.01 F
372 373 0.915364 GCCCCTCCTTCATCAGAGTT 59.085 55.0 0.00 0.0 0.00 3.01 F
1407 1463 0.321919 TGCTCCTGCATTCACCTCAC 60.322 55.0 0.00 0.0 45.31 3.51 F
1559 1616 0.108963 CCGTGTCTGGGGTGGTTTTA 59.891 55.0 0.00 0.0 0.00 1.52 F
3486 3612 0.110486 ACTTGGCCTCACGTTTGGAT 59.890 50.0 3.32 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1349 1403 0.042281 AAACTAGAGGCTACGGGGGT 59.958 55.0 0.00 0.0 0.00 4.95 R
1412 1468 0.163788 GAATATCGATTGCGCGGGTG 59.836 55.0 8.83 0.0 37.46 4.61 R
2911 3031 0.458370 GACCAACCATTTGCCGATGC 60.458 55.0 0.00 0.0 38.26 3.91 R
3516 3642 0.578683 CGCGTATGCCTGACAGAATG 59.421 55.0 3.32 0.0 39.58 2.67 R
5230 5458 0.108992 CGCATGGCAAATCTGTGCTT 60.109 50.0 6.90 0.0 44.31 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 9.868277 AAAAGAAAATACACACACATTTGAGAA 57.132 25.926 0.00 0.00 0.00 2.87
27 28 9.868277 AAAGAAAATACACACACATTTGAGAAA 57.132 25.926 0.00 0.00 0.00 2.52
28 29 8.856490 AGAAAATACACACACATTTGAGAAAC 57.144 30.769 0.00 0.00 0.00 2.78
29 30 8.465999 AGAAAATACACACACATTTGAGAAACA 58.534 29.630 0.00 0.00 0.00 2.83
30 31 8.994429 AAAATACACACACATTTGAGAAACAA 57.006 26.923 0.00 0.00 36.65 2.83
31 32 7.985634 AATACACACACATTTGAGAAACAAC 57.014 32.000 0.00 0.00 38.29 3.32
32 33 4.743493 ACACACACATTTGAGAAACAACC 58.257 39.130 0.00 0.00 38.29 3.77
33 34 4.219507 ACACACACATTTGAGAAACAACCA 59.780 37.500 0.00 0.00 38.29 3.67
34 35 5.105392 ACACACACATTTGAGAAACAACCAT 60.105 36.000 0.00 0.00 38.29 3.55
35 36 5.811613 CACACACATTTGAGAAACAACCATT 59.188 36.000 0.00 0.00 38.29 3.16
36 37 6.019640 CACACACATTTGAGAAACAACCATTC 60.020 38.462 0.00 0.00 38.29 2.67
37 38 6.127366 ACACACATTTGAGAAACAACCATTCT 60.127 34.615 0.00 0.00 39.76 2.40
38 39 6.757947 CACACATTTGAGAAACAACCATTCTT 59.242 34.615 0.00 0.00 37.26 2.52
39 40 6.980397 ACACATTTGAGAAACAACCATTCTTC 59.020 34.615 0.00 0.00 37.26 2.87
44 45 9.671279 ATTTGAGAAACAACCATTCTTCTTTTT 57.329 25.926 0.00 0.00 37.26 1.94
68 69 8.734218 TTTACCTTAGAAAATACACACACACA 57.266 30.769 0.00 0.00 0.00 3.72
69 70 6.613755 ACCTTAGAAAATACACACACACAC 57.386 37.500 0.00 0.00 0.00 3.82
70 71 6.116806 ACCTTAGAAAATACACACACACACA 58.883 36.000 0.00 0.00 0.00 3.72
71 72 6.037830 ACCTTAGAAAATACACACACACACAC 59.962 38.462 0.00 0.00 0.00 3.82
72 73 6.037720 CCTTAGAAAATACACACACACACACA 59.962 38.462 0.00 0.00 0.00 3.72
85 86 5.806502 CACACACACACATTTGAGAAACAAT 59.193 36.000 0.00 0.00 38.36 2.71
122 123 5.917541 ACCTTAGAAAATACACACACACG 57.082 39.130 0.00 0.00 0.00 4.49
142 143 3.119673 ACGCACACACATTTGAGAAACAA 60.120 39.130 0.00 0.00 36.65 2.83
159 160 2.625617 AACAACCAGTTGGTGGATGGTT 60.626 45.455 12.62 3.05 46.77 3.67
161 162 5.232705 AACAACCAGTTGGTGGATGGTTAG 61.233 45.833 12.62 6.42 46.77 2.34
165 166 0.683179 GTTGGTGGATGGTTAGGGCC 60.683 60.000 0.00 0.00 0.00 5.80
183 184 0.953960 CCGTGGTACTTCAAGCCCAC 60.954 60.000 14.34 14.34 43.13 4.61
195 196 1.815003 CAAGCCCACCAGAGATCAAAC 59.185 52.381 0.00 0.00 0.00 2.93
201 202 2.291153 CCACCAGAGATCAAACCCATGT 60.291 50.000 0.00 0.00 0.00 3.21
202 203 2.751259 CACCAGAGATCAAACCCATGTG 59.249 50.000 0.00 0.00 0.00 3.21
211 212 1.066908 CAAACCCATGTGTTGACGCTT 59.933 47.619 0.00 0.00 0.00 4.68
217 218 2.788786 CCATGTGTTGACGCTTTGTTTC 59.211 45.455 0.00 0.00 0.00 2.78
218 219 2.553079 TGTGTTGACGCTTTGTTTCC 57.447 45.000 0.00 0.00 0.00 3.13
222 223 3.924073 GTGTTGACGCTTTGTTTCCTTTT 59.076 39.130 0.00 0.00 0.00 2.27
223 224 4.387559 GTGTTGACGCTTTGTTTCCTTTTT 59.612 37.500 0.00 0.00 0.00 1.94
322 323 0.169672 TAGCGACGACTACAAGCACC 59.830 55.000 0.00 0.00 0.00 5.01
325 326 1.445582 GACGACTACAAGCACCGGG 60.446 63.158 6.32 0.00 0.00 5.73
326 327 1.870055 GACGACTACAAGCACCGGGA 61.870 60.000 6.32 0.00 0.00 5.14
361 362 2.610859 ACCGTCATTGCCCCTCCT 60.611 61.111 0.00 0.00 0.00 3.69
372 373 0.915364 GCCCCTCCTTCATCAGAGTT 59.085 55.000 0.00 0.00 0.00 3.01
384 385 3.507233 TCATCAGAGTTGGGCAAACATTC 59.493 43.478 7.64 0.00 41.61 2.67
390 391 5.047802 CAGAGTTGGGCAAACATTCTTGTAT 60.048 40.000 7.64 0.00 41.61 2.29
424 425 3.027412 AGTCGTCTATCTGCCAATGACT 58.973 45.455 0.00 0.00 34.09 3.41
436 437 2.677836 GCCAATGACTATGAGCGTTCAA 59.322 45.455 5.91 0.00 36.78 2.69
437 438 3.126858 GCCAATGACTATGAGCGTTCAAA 59.873 43.478 5.91 0.00 36.78 2.69
457 458 1.605710 ACGTCACTGCGTTGTACTAGT 59.394 47.619 0.00 0.00 43.04 2.57
458 459 2.807967 ACGTCACTGCGTTGTACTAGTA 59.192 45.455 0.00 0.00 43.04 1.82
459 460 3.120408 ACGTCACTGCGTTGTACTAGTAG 60.120 47.826 1.87 0.00 43.04 2.57
460 461 3.124128 CGTCACTGCGTTGTACTAGTAGA 59.876 47.826 1.87 0.00 0.00 2.59
461 462 4.401714 GTCACTGCGTTGTACTAGTAGAC 58.598 47.826 1.87 4.68 0.00 2.59
462 463 4.067192 TCACTGCGTTGTACTAGTAGACA 58.933 43.478 1.87 0.00 0.00 3.41
463 464 4.516321 TCACTGCGTTGTACTAGTAGACAA 59.484 41.667 1.87 4.93 33.23 3.18
466 467 6.365247 CACTGCGTTGTACTAGTAGACAATTT 59.635 38.462 13.04 0.00 37.84 1.82
489 502 3.955471 TCTATGAACCAAAGAGGCCTTG 58.045 45.455 6.77 0.00 43.14 3.61
500 513 3.584733 AGAGGCCTTGGGATTTATGTC 57.415 47.619 6.77 0.00 0.00 3.06
505 518 4.916424 AGGCCTTGGGATTTATGTCTCTAT 59.084 41.667 0.00 0.00 0.00 1.98
510 523 8.951243 GCCTTGGGATTTATGTCTCTATAATTC 58.049 37.037 0.00 0.00 0.00 2.17
515 528 9.232473 GGGATTTATGTCTCTATAATTCCAACC 57.768 37.037 15.59 0.00 40.98 3.77
545 558 8.296211 ACAATCATTCAATTACATCCATCACA 57.704 30.769 0.00 0.00 0.00 3.58
546 559 8.751242 ACAATCATTCAATTACATCCATCACAA 58.249 29.630 0.00 0.00 0.00 3.33
547 560 9.589111 CAATCATTCAATTACATCCATCACAAA 57.411 29.630 0.00 0.00 0.00 2.83
574 587 6.907206 AAAAACAGTCATTGAAACACATGG 57.093 33.333 0.00 0.00 0.00 3.66
575 588 3.648339 ACAGTCATTGAAACACATGGC 57.352 42.857 0.00 0.00 0.00 4.40
576 589 2.957680 ACAGTCATTGAAACACATGGCA 59.042 40.909 0.00 0.00 0.00 4.92
577 590 3.575256 ACAGTCATTGAAACACATGGCAT 59.425 39.130 0.00 0.00 0.00 4.40
578 591 4.039488 ACAGTCATTGAAACACATGGCATT 59.961 37.500 0.00 0.00 0.00 3.56
579 592 4.992319 CAGTCATTGAAACACATGGCATTT 59.008 37.500 0.00 0.00 0.00 2.32
580 593 5.119588 CAGTCATTGAAACACATGGCATTTC 59.880 40.000 0.00 0.25 33.75 2.17
581 594 5.011329 AGTCATTGAAACACATGGCATTTCT 59.989 36.000 15.39 0.00 34.18 2.52
582 595 5.697633 GTCATTGAAACACATGGCATTTCTT 59.302 36.000 15.39 0.00 34.18 2.52
583 596 5.927689 TCATTGAAACACATGGCATTTCTTC 59.072 36.000 15.39 7.00 34.18 2.87
584 597 4.255833 TGAAACACATGGCATTTCTTCC 57.744 40.909 15.39 0.00 34.18 3.46
585 598 3.640498 TGAAACACATGGCATTTCTTCCA 59.360 39.130 15.39 0.00 34.18 3.53
586 599 4.100653 TGAAACACATGGCATTTCTTCCAA 59.899 37.500 15.39 0.00 35.75 3.53
587 600 4.895668 AACACATGGCATTTCTTCCAAT 57.104 36.364 0.00 0.00 35.75 3.16
588 601 4.895668 ACACATGGCATTTCTTCCAATT 57.104 36.364 0.00 0.00 35.75 2.32
589 602 4.824289 ACACATGGCATTTCTTCCAATTC 58.176 39.130 0.00 0.00 35.75 2.17
590 603 3.861113 CACATGGCATTTCTTCCAATTCG 59.139 43.478 0.00 0.00 35.75 3.34
591 604 2.652941 TGGCATTTCTTCCAATTCGC 57.347 45.000 0.00 0.00 0.00 4.70
592 605 1.891811 TGGCATTTCTTCCAATTCGCA 59.108 42.857 0.00 0.00 0.00 5.10
593 606 2.298446 TGGCATTTCTTCCAATTCGCAA 59.702 40.909 0.00 0.00 0.00 4.85
594 607 3.244009 TGGCATTTCTTCCAATTCGCAAA 60.244 39.130 0.00 0.00 0.00 3.68
595 608 3.745458 GGCATTTCTTCCAATTCGCAAAA 59.255 39.130 0.00 0.00 0.00 2.44
596 609 4.213059 GGCATTTCTTCCAATTCGCAAAAA 59.787 37.500 0.00 0.00 0.00 1.94
786 804 1.430369 CCTTCCCATCCATCCTCCCC 61.430 65.000 0.00 0.00 0.00 4.81
840 868 1.207593 CCAAACCGAAAGCAGAGCG 59.792 57.895 0.00 0.00 0.00 5.03
955 998 2.111878 CCCAGGAATAGCCAGCCG 59.888 66.667 0.00 0.00 40.02 5.52
957 1000 2.746375 CCAGGAATAGCCAGCCGGT 61.746 63.158 1.90 0.00 40.02 5.28
960 1003 2.280186 GAATAGCCAGCCGGTCGG 60.280 66.667 1.90 4.91 38.57 4.79
961 1004 3.809374 GAATAGCCAGCCGGTCGGG 62.809 68.421 11.60 7.02 39.58 5.14
1197 1250 2.925706 TTCTGGCGCTACCCCACA 60.926 61.111 7.64 0.00 37.83 4.17
1319 1372 4.048470 GTCAGCCACCCCTTCCCC 62.048 72.222 0.00 0.00 0.00 4.81
1335 1389 2.695970 CCCCCGTCTCTCCCTCTCT 61.696 68.421 0.00 0.00 0.00 3.10
1340 1394 2.043992 CCGTCTCTCCCTCTCTCTCTA 58.956 57.143 0.00 0.00 0.00 2.43
1341 1395 2.637872 CCGTCTCTCCCTCTCTCTCTAT 59.362 54.545 0.00 0.00 0.00 1.98
1349 1403 2.069775 CCTCTCTCTCTATCTCCCCCA 58.930 57.143 0.00 0.00 0.00 4.96
1352 1406 0.861155 TCTCTCTATCTCCCCCACCC 59.139 60.000 0.00 0.00 0.00 4.61
1406 1462 2.068915 TGCTCCTGCATTCACCTCA 58.931 52.632 0.00 0.00 45.31 3.86
1407 1463 0.321919 TGCTCCTGCATTCACCTCAC 60.322 55.000 0.00 0.00 45.31 3.51
1408 1464 1.028868 GCTCCTGCATTCACCTCACC 61.029 60.000 0.00 0.00 39.41 4.02
1409 1465 0.617413 CTCCTGCATTCACCTCACCT 59.383 55.000 0.00 0.00 0.00 4.00
1410 1466 0.615331 TCCTGCATTCACCTCACCTC 59.385 55.000 0.00 0.00 0.00 3.85
1411 1467 0.393537 CCTGCATTCACCTCACCTCC 60.394 60.000 0.00 0.00 0.00 4.30
1412 1468 0.393537 CTGCATTCACCTCACCTCCC 60.394 60.000 0.00 0.00 0.00 4.30
1416 1472 1.208165 ATTCACCTCACCTCCCACCC 61.208 60.000 0.00 0.00 0.00 4.61
1458 1514 4.105486 TCATCTTCTGCGTTCGTCAATAG 58.895 43.478 0.00 0.00 0.00 1.73
1459 1515 3.570926 TCTTCTGCGTTCGTCAATAGT 57.429 42.857 0.00 0.00 0.00 2.12
1460 1516 4.690184 TCTTCTGCGTTCGTCAATAGTA 57.310 40.909 0.00 0.00 0.00 1.82
1461 1517 5.244785 TCTTCTGCGTTCGTCAATAGTAT 57.755 39.130 0.00 0.00 0.00 2.12
1462 1518 5.271625 TCTTCTGCGTTCGTCAATAGTATC 58.728 41.667 0.00 0.00 0.00 2.24
1463 1519 4.895224 TCTGCGTTCGTCAATAGTATCT 57.105 40.909 0.00 0.00 0.00 1.98
1464 1520 4.598062 TCTGCGTTCGTCAATAGTATCTG 58.402 43.478 0.00 0.00 0.00 2.90
1467 1523 3.702330 CGTTCGTCAATAGTATCTGGCA 58.298 45.455 0.00 0.00 0.00 4.92
1468 1524 3.731216 CGTTCGTCAATAGTATCTGGCAG 59.269 47.826 8.58 8.58 0.00 4.85
1469 1525 3.371102 TCGTCAATAGTATCTGGCAGC 57.629 47.619 10.34 0.00 0.00 5.25
1470 1526 2.959030 TCGTCAATAGTATCTGGCAGCT 59.041 45.455 10.34 2.00 0.00 4.24
1471 1527 3.004839 TCGTCAATAGTATCTGGCAGCTC 59.995 47.826 10.34 2.48 0.00 4.09
1472 1528 3.658709 GTCAATAGTATCTGGCAGCTCC 58.341 50.000 10.34 0.00 0.00 4.70
1473 1529 3.323403 GTCAATAGTATCTGGCAGCTCCT 59.677 47.826 10.34 7.22 35.26 3.69
1474 1530 3.323115 TCAATAGTATCTGGCAGCTCCTG 59.677 47.826 10.34 3.04 35.26 3.86
1504 1561 1.141858 AGCCTCCTTCCGATTGGATTC 59.858 52.381 1.37 0.00 45.91 2.52
1532 1589 1.972075 TGTTGGTGGTCGTATTCCTCA 59.028 47.619 0.00 0.00 0.00 3.86
1534 1591 3.195661 GTTGGTGGTCGTATTCCTCATC 58.804 50.000 0.00 0.00 0.00 2.92
1544 1601 5.573282 GTCGTATTCCTCATCATATTCCGTG 59.427 44.000 0.00 0.00 0.00 4.94
1550 1607 3.555795 CCTCATCATATTCCGTGTCTGGG 60.556 52.174 0.00 0.00 0.00 4.45
1553 1610 1.484653 TCATATTCCGTGTCTGGGGTG 59.515 52.381 0.00 0.00 0.00 4.61
1559 1616 0.108963 CCGTGTCTGGGGTGGTTTTA 59.891 55.000 0.00 0.00 0.00 1.52
1628 1685 1.199327 TCGTCTTTGTCGTCTGCTAGG 59.801 52.381 0.00 0.00 0.00 3.02
1651 1708 5.009210 GGCAGCCAACCGTGAATAAATAATA 59.991 40.000 6.55 0.00 0.00 0.98
1653 1710 6.636850 GCAGCCAACCGTGAATAAATAATAAG 59.363 38.462 0.00 0.00 0.00 1.73
1720 1805 3.885297 GCTGAATAGCCTGCTTCCATTTA 59.115 43.478 0.00 0.00 44.33 1.40
1721 1806 4.339247 GCTGAATAGCCTGCTTCCATTTAA 59.661 41.667 0.00 0.00 44.33 1.52
1723 1808 6.627953 GCTGAATAGCCTGCTTCCATTTAAAA 60.628 38.462 0.00 0.00 44.33 1.52
1724 1809 7.238486 TGAATAGCCTGCTTCCATTTAAAAA 57.762 32.000 0.00 0.00 0.00 1.94
1861 1950 4.407945 TGCCTTTGATTAGTACTAGGTCCC 59.592 45.833 2.23 0.00 0.00 4.46
1980 2069 5.080337 TGCTGACGATTTCTCCTATCCTAT 58.920 41.667 0.00 0.00 0.00 2.57
2024 2123 3.364764 GCTTTCAGCAATGTCAGTCAGTC 60.365 47.826 0.00 0.00 41.89 3.51
2025 2124 3.473923 TTCAGCAATGTCAGTCAGTCA 57.526 42.857 0.00 0.00 0.00 3.41
2026 2125 3.036075 TCAGCAATGTCAGTCAGTCAG 57.964 47.619 0.00 0.00 0.00 3.51
2027 2126 2.366590 TCAGCAATGTCAGTCAGTCAGT 59.633 45.455 0.00 0.00 0.00 3.41
2028 2127 2.735663 CAGCAATGTCAGTCAGTCAGTC 59.264 50.000 0.00 0.00 0.00 3.51
2029 2128 2.632028 AGCAATGTCAGTCAGTCAGTCT 59.368 45.455 0.00 0.00 0.00 3.24
2030 2129 3.070734 AGCAATGTCAGTCAGTCAGTCTT 59.929 43.478 0.00 0.00 0.00 3.01
2031 2130 3.186001 GCAATGTCAGTCAGTCAGTCTTG 59.814 47.826 0.00 0.00 0.00 3.02
2032 2131 4.375272 CAATGTCAGTCAGTCAGTCTTGT 58.625 43.478 0.00 0.00 0.00 3.16
2033 2132 4.679373 ATGTCAGTCAGTCAGTCTTGTT 57.321 40.909 0.00 0.00 0.00 2.83
2034 2133 5.791336 ATGTCAGTCAGTCAGTCTTGTTA 57.209 39.130 0.00 0.00 0.00 2.41
2066 2165 4.670896 TCGATCTGCCAATGACTATGAA 57.329 40.909 0.00 0.00 0.00 2.57
2085 2184 2.506544 CGTTCAGACGTCACTGTGG 58.493 57.895 19.50 0.00 44.08 4.17
2156 2258 5.127845 AGGAATCGAAGATTTGAGAGTGCTA 59.872 40.000 0.00 0.00 45.12 3.49
2166 2268 8.934507 AGATTTGAGAGTGCTAAGTATTGTAC 57.065 34.615 0.00 0.00 0.00 2.90
2172 2274 9.848710 TGAGAGTGCTAAGTATTGTACTAGTAT 57.151 33.333 5.75 0.00 38.26 2.12
2190 2298 7.686434 ACTAGTATATTGTTTCCTTGTGGTGT 58.314 34.615 0.00 0.00 34.23 4.16
2196 2304 2.757868 TGTTTCCTTGTGGTGTTTGGAG 59.242 45.455 0.00 0.00 34.23 3.86
2197 2305 2.065899 TTCCTTGTGGTGTTTGGAGG 57.934 50.000 0.00 0.00 34.23 4.30
2198 2306 1.217916 TCCTTGTGGTGTTTGGAGGA 58.782 50.000 0.00 0.00 34.23 3.71
2209 2317 2.306805 TGTTTGGAGGACTGCAGATGAT 59.693 45.455 23.35 2.64 31.08 2.45
2212 2320 5.128919 GTTTGGAGGACTGCAGATGATAAT 58.871 41.667 23.35 0.00 31.08 1.28
2249 2358 1.635487 TGGGCACTCCAATAGCTCTTT 59.365 47.619 0.00 0.00 43.84 2.52
2250 2359 2.019984 GGGCACTCCAATAGCTCTTTG 58.980 52.381 0.00 0.00 35.00 2.77
2292 2401 6.216046 TGGGATATTGGCAGATCTCATATTCA 59.784 38.462 9.33 0.81 27.28 2.57
2319 2428 2.479566 TCTTGTCTGGTGGATCTTGC 57.520 50.000 0.00 0.00 0.00 4.01
2330 2439 3.119291 GTGGATCTTGCTGATGTCTACG 58.881 50.000 0.00 0.00 35.14 3.51
2357 2475 8.082242 GCTTGACTTTTGAGTATTTTACACCAT 58.918 33.333 0.00 0.00 0.00 3.55
2372 2490 6.887626 TTACACCATTTGAAAAGTACTCCC 57.112 37.500 0.00 0.00 0.00 4.30
2373 2491 5.061721 ACACCATTTGAAAAGTACTCCCT 57.938 39.130 0.00 0.00 0.00 4.20
2374 2492 5.070685 ACACCATTTGAAAAGTACTCCCTC 58.929 41.667 0.00 0.00 0.00 4.30
2375 2493 5.163088 ACACCATTTGAAAAGTACTCCCTCT 60.163 40.000 0.00 0.00 0.00 3.69
2376 2494 5.182001 CACCATTTGAAAAGTACTCCCTCTG 59.818 44.000 0.00 0.00 0.00 3.35
2377 2495 5.163088 ACCATTTGAAAAGTACTCCCTCTGT 60.163 40.000 0.00 0.00 0.00 3.41
2378 2496 6.043938 ACCATTTGAAAAGTACTCCCTCTGTA 59.956 38.462 0.00 0.00 0.00 2.74
2379 2497 6.940298 CCATTTGAAAAGTACTCCCTCTGTAA 59.060 38.462 0.00 0.00 0.00 2.41
2380 2498 7.447238 CCATTTGAAAAGTACTCCCTCTGTAAA 59.553 37.037 0.00 0.00 0.00 2.01
2381 2499 7.797038 TTTGAAAAGTACTCCCTCTGTAAAC 57.203 36.000 0.00 0.00 0.00 2.01
2382 2500 6.742559 TGAAAAGTACTCCCTCTGTAAACT 57.257 37.500 0.00 0.00 0.00 2.66
2383 2501 7.844493 TGAAAAGTACTCCCTCTGTAAACTA 57.156 36.000 0.00 0.00 0.00 2.24
2384 2502 8.253867 TGAAAAGTACTCCCTCTGTAAACTAA 57.746 34.615 0.00 0.00 0.00 2.24
2385 2503 8.877195 TGAAAAGTACTCCCTCTGTAAACTAAT 58.123 33.333 0.00 0.00 0.00 1.73
2393 2511 9.939424 ACTCCCTCTGTAAACTAATATAAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
2395 2513 9.710818 TCCCTCTGTAAACTAATATAAGAGTGT 57.289 33.333 0.00 0.00 0.00 3.55
2442 2560 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
2443 2561 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
2444 2562 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
2445 2563 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
2520 2638 4.018506 TCTTGCTGATGGGATTTTACTCCA 60.019 41.667 0.00 0.00 37.01 3.86
2530 2648 6.346096 TGGGATTTTACTCCAACGAATCTAG 58.654 40.000 0.00 0.00 37.01 2.43
2670 2788 5.858581 CCTGTTGCTTAAATCTGCAGTTAAC 59.141 40.000 14.67 6.29 40.46 2.01
2698 2817 3.961477 TTTTGTCACGTCACATTCCTG 57.039 42.857 0.00 0.00 0.00 3.86
2911 3031 4.792068 TGTTGGCCTCATCTATAAAAGGG 58.208 43.478 3.32 0.00 0.00 3.95
3043 3163 4.051237 GTCATCCTTTTGACAAAGTTGCC 58.949 43.478 0.10 0.00 44.38 4.52
3486 3612 0.110486 ACTTGGCCTCACGTTTGGAT 59.890 50.000 3.32 0.00 0.00 3.41
3516 3642 3.112709 GTCGTCCTTCACAGCGGC 61.113 66.667 0.00 0.00 0.00 6.53
3622 3756 5.754890 CCTTTTCACTTTGGTTCTGAAATGG 59.245 40.000 8.87 8.87 37.41 3.16
3689 3823 5.629020 GCAGAACATCGACAAAATAAAGCAA 59.371 36.000 0.00 0.00 0.00 3.91
3979 4122 4.127171 CGTTTATTGGTGTCCCCTATGAG 58.873 47.826 0.00 0.00 30.79 2.90
3989 4132 1.767672 CCCTATGAGGCCTGCTCCA 60.768 63.158 12.00 0.70 32.73 3.86
3995 4138 1.379576 GAGGCCTGCTCCAAATGCT 60.380 57.895 12.00 0.00 0.00 3.79
4075 4218 4.631377 TCATTATCTTTGTGCCAAGACTCG 59.369 41.667 0.00 0.00 0.00 4.18
4082 4225 3.510388 TGTGCCAAGACTCGAGATTAG 57.490 47.619 21.68 7.75 0.00 1.73
4133 4277 5.049828 GGTTTTTGTTTGATCTGGACTTGG 58.950 41.667 0.00 0.00 0.00 3.61
4181 4325 0.452184 ACATCGTCGACTTCTCGCAT 59.548 50.000 14.70 0.00 39.96 4.73
4321 4465 1.591059 CGATGGAGAAGCTGGCGAG 60.591 63.158 0.00 0.00 0.00 5.03
4484 4632 2.034432 CACTGATGATCTGACGGAGGAG 59.966 54.545 6.32 0.00 0.00 3.69
4486 4634 0.316841 GATGATCTGACGGAGGAGCC 59.683 60.000 0.00 0.00 0.00 4.70
4545 4696 0.108186 GCTCCGATGACATGACACCA 60.108 55.000 0.00 0.00 0.00 4.17
4810 4973 6.319658 GTCCATCTCTCCTAATTGATTGCAAA 59.680 38.462 1.71 0.00 37.59 3.68
4815 4978 5.012239 TCTCCTAATTGATTGCAAAGTGCT 58.988 37.500 1.71 0.00 45.31 4.40
4817 4980 5.713025 TCCTAATTGATTGCAAAGTGCTTC 58.287 37.500 1.71 0.00 45.31 3.86
4834 4997 2.280389 CGTGTGCTGTCAGGCAGT 60.280 61.111 3.41 0.00 46.64 4.40
4844 5007 0.038892 GTCAGGCAGTGTGGCATTTG 60.039 55.000 3.09 0.00 46.46 2.32
4873 5036 6.203723 GTCTGCTTCATAGTTTCAGTTTCAGT 59.796 38.462 0.00 0.00 0.00 3.41
4874 5037 6.767902 TCTGCTTCATAGTTTCAGTTTCAGTT 59.232 34.615 0.00 0.00 0.00 3.16
4875 5038 7.283127 TCTGCTTCATAGTTTCAGTTTCAGTTT 59.717 33.333 0.00 0.00 0.00 2.66
4876 5039 7.417612 TGCTTCATAGTTTCAGTTTCAGTTTC 58.582 34.615 0.00 0.00 0.00 2.78
4877 5040 6.575201 GCTTCATAGTTTCAGTTTCAGTTTCG 59.425 38.462 0.00 0.00 0.00 3.46
4878 5041 7.548196 TTCATAGTTTCAGTTTCAGTTTCGT 57.452 32.000 0.00 0.00 0.00 3.85
4939 5102 1.676967 CCAAACAGGAGGCAGAGGC 60.677 63.158 0.00 0.00 41.22 4.70
4940 5103 1.377994 CAAACAGGAGGCAGAGGCT 59.622 57.895 0.00 0.00 42.48 4.58
4941 5104 0.251077 CAAACAGGAGGCAGAGGCTT 60.251 55.000 0.00 0.00 38.98 4.35
4942 5105 1.003580 CAAACAGGAGGCAGAGGCTTA 59.996 52.381 0.00 0.00 38.98 3.09
4943 5106 1.362224 AACAGGAGGCAGAGGCTTAA 58.638 50.000 0.00 0.00 38.98 1.85
4944 5107 1.362224 ACAGGAGGCAGAGGCTTAAA 58.638 50.000 0.00 0.00 38.98 1.52
4945 5108 1.003696 ACAGGAGGCAGAGGCTTAAAC 59.996 52.381 0.00 0.00 38.98 2.01
4946 5109 1.280421 CAGGAGGCAGAGGCTTAAACT 59.720 52.381 0.00 0.00 38.98 2.66
4973 5171 0.602638 CTTAACCTGCCTGCACGACA 60.603 55.000 0.00 0.00 0.00 4.35
4992 5190 5.236478 ACGACAAATTCTTGGTCTACAACAG 59.764 40.000 0.00 0.00 36.82 3.16
5048 5276 3.923017 GCTTGGTCAGTAAAGCAATGT 57.077 42.857 2.66 0.00 46.45 2.71
5053 5281 5.689383 TGGTCAGTAAAGCAATGTCTTTC 57.311 39.130 6.06 1.14 37.46 2.62
5056 5284 3.751175 TCAGTAAAGCAATGTCTTTCGGG 59.249 43.478 6.06 0.03 37.46 5.14
5057 5285 3.751175 CAGTAAAGCAATGTCTTTCGGGA 59.249 43.478 6.06 0.00 37.46 5.14
5058 5286 4.215399 CAGTAAAGCAATGTCTTTCGGGAA 59.785 41.667 6.06 0.00 37.46 3.97
5059 5287 5.010282 AGTAAAGCAATGTCTTTCGGGAAT 58.990 37.500 6.06 0.00 37.46 3.01
5060 5288 3.855689 AAGCAATGTCTTTCGGGAATG 57.144 42.857 0.00 0.00 0.00 2.67
5061 5289 3.071874 AGCAATGTCTTTCGGGAATGA 57.928 42.857 0.00 0.00 0.00 2.57
5062 5290 3.624777 AGCAATGTCTTTCGGGAATGAT 58.375 40.909 1.07 0.00 0.00 2.45
5063 5291 4.780815 AGCAATGTCTTTCGGGAATGATA 58.219 39.130 1.07 0.00 0.00 2.15
5064 5292 5.192927 AGCAATGTCTTTCGGGAATGATAA 58.807 37.500 1.07 0.00 0.00 1.75
5065 5293 5.652014 AGCAATGTCTTTCGGGAATGATAAA 59.348 36.000 1.07 0.00 0.00 1.40
5066 5294 5.743872 GCAATGTCTTTCGGGAATGATAAAC 59.256 40.000 1.07 0.00 0.00 2.01
5067 5295 6.265577 CAATGTCTTTCGGGAATGATAAACC 58.734 40.000 1.07 0.00 0.00 3.27
5068 5296 4.266714 TGTCTTTCGGGAATGATAAACCC 58.733 43.478 0.00 0.00 40.17 4.11
5069 5297 3.630769 GTCTTTCGGGAATGATAAACCCC 59.369 47.826 0.00 0.00 40.43 4.95
5074 5302 1.944709 GGGAATGATAAACCCCGAACG 59.055 52.381 0.00 0.00 37.85 3.95
5075 5303 2.635714 GGAATGATAAACCCCGAACGT 58.364 47.619 0.00 0.00 0.00 3.99
5076 5304 3.011818 GGAATGATAAACCCCGAACGTT 58.988 45.455 0.00 0.00 0.00 3.99
5077 5305 3.441222 GGAATGATAAACCCCGAACGTTT 59.559 43.478 0.46 0.00 37.25 3.60
5078 5306 4.408694 GAATGATAAACCCCGAACGTTTG 58.591 43.478 8.68 8.68 35.19 2.93
5079 5307 2.152830 TGATAAACCCCGAACGTTTGG 58.847 47.619 25.42 25.42 35.19 3.28
5087 5315 2.325509 CCGAACGTTTGGGATTTGAC 57.674 50.000 24.79 0.00 0.00 3.18
5088 5316 1.068816 CCGAACGTTTGGGATTTGACC 60.069 52.381 24.79 0.00 0.00 4.02
5089 5317 1.604755 CGAACGTTTGGGATTTGACCA 59.395 47.619 7.72 0.00 35.88 4.02
5090 5318 2.227865 CGAACGTTTGGGATTTGACCAT 59.772 45.455 7.72 0.00 37.93 3.55
5091 5319 3.437395 CGAACGTTTGGGATTTGACCATA 59.563 43.478 7.72 0.00 37.93 2.74
5092 5320 4.436852 CGAACGTTTGGGATTTGACCATAG 60.437 45.833 7.72 0.00 37.93 2.23
5093 5321 2.752903 ACGTTTGGGATTTGACCATAGC 59.247 45.455 0.00 0.00 37.93 2.97
5094 5322 2.752354 CGTTTGGGATTTGACCATAGCA 59.248 45.455 0.00 0.00 37.93 3.49
5095 5323 3.192422 CGTTTGGGATTTGACCATAGCAA 59.808 43.478 0.00 0.00 37.93 3.91
5096 5324 4.321601 CGTTTGGGATTTGACCATAGCAAA 60.322 41.667 0.00 0.00 37.93 3.68
5097 5325 5.624281 CGTTTGGGATTTGACCATAGCAAAT 60.624 40.000 0.00 0.00 45.68 2.32
5106 5334 9.683069 GATTTGACCATAGCAAATCGAATATTT 57.317 29.630 11.74 0.00 46.46 1.40
5108 5336 9.868277 TTTGACCATAGCAAATCGAATATTTTT 57.132 25.926 0.00 0.00 30.87 1.94
5129 5357 6.591750 TTTTATGGCAAATTTAGTTCGGGA 57.408 33.333 0.00 0.00 0.00 5.14
5130 5358 6.783708 TTTATGGCAAATTTAGTTCGGGAT 57.216 33.333 0.00 0.00 0.00 3.85
5131 5359 6.783708 TTATGGCAAATTTAGTTCGGGATT 57.216 33.333 0.00 0.00 0.00 3.01
5132 5360 5.675684 ATGGCAAATTTAGTTCGGGATTT 57.324 34.783 0.00 0.00 0.00 2.17
5133 5361 4.815269 TGGCAAATTTAGTTCGGGATTTG 58.185 39.130 0.00 0.00 40.60 2.32
5139 5367 7.629652 GCAAATTTAGTTCGGGATTTGACCATA 60.630 37.037 10.76 0.00 40.26 2.74
5141 5369 2.919228 AGTTCGGGATTTGACCATAGC 58.081 47.619 0.00 0.00 0.00 2.97
5175 5403 7.344910 GTTTTCGATGGCAATTTTAATGACA 57.655 32.000 0.00 0.00 40.80 3.58
5180 5408 5.447144 CGATGGCAATTTTAATGACACGAGA 60.447 40.000 0.00 0.00 38.97 4.04
5185 5413 5.004726 GCAATTTTAATGACACGAGAATGGC 59.995 40.000 0.00 0.00 0.00 4.40
5193 5421 4.130857 TGACACGAGAATGGCAAGTTTAA 58.869 39.130 0.00 0.00 33.52 1.52
5202 5430 3.281341 TGGCAAGTTTAATTGACAGCG 57.719 42.857 0.00 0.00 43.29 5.18
5203 5431 2.621055 TGGCAAGTTTAATTGACAGCGT 59.379 40.909 0.00 0.00 43.29 5.07
5204 5432 2.979813 GGCAAGTTTAATTGACAGCGTG 59.020 45.455 0.00 0.00 38.15 5.34
5206 5434 2.979813 CAAGTTTAATTGACAGCGTGGC 59.020 45.455 0.00 0.00 31.55 5.01
5207 5435 2.226330 AGTTTAATTGACAGCGTGGCA 58.774 42.857 0.00 0.00 30.30 4.92
5213 5441 2.132740 TTGACAGCGTGGCAATTTTC 57.867 45.000 2.64 0.00 41.15 2.29
5214 5442 1.317613 TGACAGCGTGGCAATTTTCT 58.682 45.000 0.00 0.00 28.38 2.52
5215 5443 1.001487 TGACAGCGTGGCAATTTTCTG 60.001 47.619 0.00 0.00 28.38 3.02
5216 5444 0.314935 ACAGCGTGGCAATTTTCTGG 59.685 50.000 0.00 0.00 0.00 3.86
5217 5445 1.010419 CAGCGTGGCAATTTTCTGGC 61.010 55.000 0.00 0.00 42.07 4.85
5226 5454 5.784750 GGCAATTTTCTGGCAAAAGATAC 57.215 39.130 0.00 0.00 41.38 2.24
5227 5455 5.237048 GGCAATTTTCTGGCAAAAGATACA 58.763 37.500 0.00 0.00 41.38 2.29
5228 5456 5.120674 GGCAATTTTCTGGCAAAAGATACAC 59.879 40.000 0.00 0.00 41.38 2.90
5229 5457 5.928264 GCAATTTTCTGGCAAAAGATACACT 59.072 36.000 0.00 0.00 0.00 3.55
5230 5458 7.090173 GCAATTTTCTGGCAAAAGATACACTA 58.910 34.615 0.00 0.00 0.00 2.74
5231 5459 7.598493 GCAATTTTCTGGCAAAAGATACACTAA 59.402 33.333 0.00 0.00 0.00 2.24
5232 5460 9.132521 CAATTTTCTGGCAAAAGATACACTAAG 57.867 33.333 0.00 0.00 0.00 2.18
5233 5461 5.880054 TTCTGGCAAAAGATACACTAAGC 57.120 39.130 0.00 0.00 0.00 3.09
5234 5462 4.905429 TCTGGCAAAAGATACACTAAGCA 58.095 39.130 0.00 0.00 0.00 3.91
5235 5463 4.695455 TCTGGCAAAAGATACACTAAGCAC 59.305 41.667 0.00 0.00 0.00 4.40
5236 5464 4.393834 TGGCAAAAGATACACTAAGCACA 58.606 39.130 0.00 0.00 0.00 4.57
5237 5465 4.455533 TGGCAAAAGATACACTAAGCACAG 59.544 41.667 0.00 0.00 0.00 3.66
5238 5466 4.695455 GGCAAAAGATACACTAAGCACAGA 59.305 41.667 0.00 0.00 0.00 3.41
5239 5467 5.355350 GGCAAAAGATACACTAAGCACAGAT 59.645 40.000 0.00 0.00 0.00 2.90
5240 5468 6.127897 GGCAAAAGATACACTAAGCACAGATT 60.128 38.462 0.00 0.00 0.00 2.40
5241 5469 7.308435 GCAAAAGATACACTAAGCACAGATTT 58.692 34.615 0.00 0.00 0.00 2.17
5242 5470 7.272084 GCAAAAGATACACTAAGCACAGATTTG 59.728 37.037 0.00 0.00 0.00 2.32
5243 5471 6.428385 AAGATACACTAAGCACAGATTTGC 57.572 37.500 0.00 0.00 43.34 3.68
5244 5472 4.878397 AGATACACTAAGCACAGATTTGCC 59.122 41.667 0.00 0.00 44.14 4.52
5245 5473 2.862541 ACACTAAGCACAGATTTGCCA 58.137 42.857 0.00 0.00 44.14 4.92
5246 5474 3.424703 ACACTAAGCACAGATTTGCCAT 58.575 40.909 0.00 0.00 44.14 4.40
5247 5475 3.192001 ACACTAAGCACAGATTTGCCATG 59.808 43.478 0.00 0.00 44.14 3.66
5248 5476 2.165030 ACTAAGCACAGATTTGCCATGC 59.835 45.455 0.00 0.00 44.14 4.06
5249 5477 0.108992 AAGCACAGATTTGCCATGCG 60.109 50.000 0.00 0.00 44.14 4.73
5250 5478 2.162754 GCACAGATTTGCCATGCGC 61.163 57.895 0.00 0.00 36.42 6.09
5251 5479 1.870458 CACAGATTTGCCATGCGCG 60.870 57.895 0.00 0.00 42.08 6.86
5252 5480 2.334946 ACAGATTTGCCATGCGCGT 61.335 52.632 8.43 0.00 42.08 6.01
5253 5481 1.584483 CAGATTTGCCATGCGCGTC 60.584 57.895 8.43 0.00 42.08 5.19
5254 5482 2.039974 AGATTTGCCATGCGCGTCA 61.040 52.632 8.43 6.86 42.08 4.35
5255 5483 1.154054 GATTTGCCATGCGCGTCAA 60.154 52.632 8.43 0.00 42.08 3.18
5256 5484 1.405469 GATTTGCCATGCGCGTCAAC 61.405 55.000 8.43 1.67 42.08 3.18
5257 5485 1.865788 ATTTGCCATGCGCGTCAACT 61.866 50.000 8.43 0.00 42.08 3.16
5258 5486 2.069465 TTTGCCATGCGCGTCAACTT 62.069 50.000 8.43 0.00 42.08 2.66
5259 5487 2.069465 TTGCCATGCGCGTCAACTTT 62.069 50.000 8.43 0.00 42.08 2.66
5260 5488 2.082366 GCCATGCGCGTCAACTTTG 61.082 57.895 8.43 1.60 0.00 2.77
5261 5489 2.082366 CCATGCGCGTCAACTTTGC 61.082 57.895 8.43 0.00 0.00 3.68
5262 5490 2.082366 CATGCGCGTCAACTTTGCC 61.082 57.895 8.43 0.00 0.00 4.52
5263 5491 2.551006 ATGCGCGTCAACTTTGCCA 61.551 52.632 8.43 0.00 0.00 4.92
5264 5492 1.865788 ATGCGCGTCAACTTTGCCAT 61.866 50.000 8.43 0.00 0.00 4.40
5268 5496 0.169009 GCGTCAACTTTGCCATCCTC 59.831 55.000 0.00 0.00 0.00 3.71
5273 5501 1.298859 AACTTTGCCATCCTCGCGTC 61.299 55.000 5.77 0.00 0.00 5.19
5274 5502 1.741401 CTTTGCCATCCTCGCGTCA 60.741 57.895 5.77 0.00 0.00 4.35
5275 5503 1.078497 TTTGCCATCCTCGCGTCAT 60.078 52.632 5.77 0.00 0.00 3.06
5285 5513 2.744741 TCCTCGCGTCATTAAAATTGCA 59.255 40.909 5.77 0.00 0.00 4.08
5286 5514 3.189495 TCCTCGCGTCATTAAAATTGCAA 59.811 39.130 5.77 0.00 0.00 4.08
5288 5516 4.027458 CCTCGCGTCATTAAAATTGCAATG 60.027 41.667 13.82 0.26 34.17 2.82
5289 5517 4.727475 TCGCGTCATTAAAATTGCAATGA 58.273 34.783 13.82 3.10 38.50 2.57
5295 5523 6.392353 TCATTAAAATTGCAATGACAAGCG 57.608 33.333 13.82 0.00 36.49 4.68
5298 5526 4.713854 AAAATTGCAATGACAAGCGTTC 57.286 36.364 13.82 0.00 31.96 3.95
5304 5532 2.589841 GCAATGACAAGCGTTCGATTTC 59.410 45.455 0.00 0.00 0.00 2.17
5305 5533 3.809234 CAATGACAAGCGTTCGATTTCA 58.191 40.909 0.00 3.95 0.00 2.69
5311 5573 0.391263 AGCGTTCGATTTCAGGGTCC 60.391 55.000 0.00 0.00 0.00 4.46
5320 5582 3.375299 CGATTTCAGGGTCCATGTCTTTC 59.625 47.826 2.95 0.00 0.00 2.62
5397 5663 5.938125 TGTTTTACAGCAGAGTATTCCTTCC 59.062 40.000 0.00 0.00 0.00 3.46
5415 5681 1.374758 CGCCTCTGTCAACTGGTCC 60.375 63.158 0.00 0.00 0.00 4.46
5420 5686 1.417890 CTCTGTCAACTGGTCCCAACT 59.582 52.381 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.868277 TTCTCAAATGTGTGTGTATTTTCTTTT 57.132 25.926 0.00 0.00 0.00 2.27
1 2 9.868277 TTTCTCAAATGTGTGTGTATTTTCTTT 57.132 25.926 0.00 0.00 0.00 2.52
2 3 9.301153 GTTTCTCAAATGTGTGTGTATTTTCTT 57.699 29.630 0.00 0.00 0.00 2.52
3 4 8.465999 TGTTTCTCAAATGTGTGTGTATTTTCT 58.534 29.630 0.00 0.00 0.00 2.52
5 6 8.868916 GTTGTTTCTCAAATGTGTGTGTATTTT 58.131 29.630 0.00 0.00 37.81 1.82
6 7 7.491048 GGTTGTTTCTCAAATGTGTGTGTATTT 59.509 33.333 0.00 0.00 37.81 1.40
7 8 6.978080 GGTTGTTTCTCAAATGTGTGTGTATT 59.022 34.615 0.00 0.00 37.81 1.89
8 9 6.096141 TGGTTGTTTCTCAAATGTGTGTGTAT 59.904 34.615 0.00 0.00 37.81 2.29
9 10 5.416013 TGGTTGTTTCTCAAATGTGTGTGTA 59.584 36.000 0.00 0.00 37.81 2.90
10 11 4.219507 TGGTTGTTTCTCAAATGTGTGTGT 59.780 37.500 0.00 0.00 37.81 3.72
11 12 4.742417 TGGTTGTTTCTCAAATGTGTGTG 58.258 39.130 0.00 0.00 37.81 3.82
12 13 5.596836 ATGGTTGTTTCTCAAATGTGTGT 57.403 34.783 0.00 0.00 37.81 3.72
13 14 6.275335 AGAATGGTTGTTTCTCAAATGTGTG 58.725 36.000 0.00 0.00 37.81 3.82
14 15 6.469782 AGAATGGTTGTTTCTCAAATGTGT 57.530 33.333 0.00 0.00 37.81 3.72
15 16 7.205297 AGAAGAATGGTTGTTTCTCAAATGTG 58.795 34.615 0.00 0.00 37.81 3.21
16 17 7.352079 AGAAGAATGGTTGTTTCTCAAATGT 57.648 32.000 0.00 0.00 37.81 2.71
17 18 8.652810 AAAGAAGAATGGTTGTTTCTCAAATG 57.347 30.769 0.00 0.00 37.81 2.32
18 19 9.671279 AAAAAGAAGAATGGTTGTTTCTCAAAT 57.329 25.926 0.00 0.00 37.81 2.32
44 45 7.769507 TGTGTGTGTGTGTATTTTCTAAGGTAA 59.230 33.333 0.00 0.00 0.00 2.85
68 69 9.603921 AGAAAAATGATTGTTTCTCAAATGTGT 57.396 25.926 8.51 0.00 39.34 3.72
96 97 8.336806 CGTGTGTGTGTATTTTCTAAGGTAAAA 58.663 33.333 0.00 0.00 0.00 1.52
97 98 7.518689 GCGTGTGTGTGTATTTTCTAAGGTAAA 60.519 37.037 0.00 0.00 0.00 2.01
98 99 6.073657 GCGTGTGTGTGTATTTTCTAAGGTAA 60.074 38.462 0.00 0.00 0.00 2.85
99 100 5.406175 GCGTGTGTGTGTATTTTCTAAGGTA 59.594 40.000 0.00 0.00 0.00 3.08
108 109 2.010497 TGTGTGCGTGTGTGTGTATTT 58.990 42.857 0.00 0.00 0.00 1.40
112 113 1.024046 ATGTGTGTGCGTGTGTGTGT 61.024 50.000 0.00 0.00 0.00 3.72
115 116 1.190249 CAAATGTGTGTGCGTGTGTG 58.810 50.000 0.00 0.00 0.00 3.82
116 117 1.063912 CTCAAATGTGTGTGCGTGTGT 59.936 47.619 0.00 0.00 0.00 3.72
117 118 1.330213 TCTCAAATGTGTGTGCGTGTG 59.670 47.619 0.00 0.00 0.00 3.82
118 119 1.662517 TCTCAAATGTGTGTGCGTGT 58.337 45.000 0.00 0.00 0.00 4.49
119 120 2.753989 TTCTCAAATGTGTGTGCGTG 57.246 45.000 0.00 0.00 0.00 5.34
120 121 2.421775 TGTTTCTCAAATGTGTGTGCGT 59.578 40.909 0.00 0.00 0.00 5.24
121 122 3.063670 TGTTTCTCAAATGTGTGTGCG 57.936 42.857 0.00 0.00 0.00 5.34
122 123 3.551485 GGTTGTTTCTCAAATGTGTGTGC 59.449 43.478 0.00 0.00 37.81 4.57
159 160 0.899720 CTTGAAGTACCACGGCCCTA 59.100 55.000 0.00 0.00 0.00 3.53
161 162 2.038837 GCTTGAAGTACCACGGCCC 61.039 63.158 0.00 0.00 0.00 5.80
165 166 2.540145 GTGGGCTTGAAGTACCACG 58.460 57.895 19.79 0.00 43.28 4.94
183 184 3.077484 ACACATGGGTTTGATCTCTGG 57.923 47.619 0.00 0.00 0.00 3.86
195 196 0.667993 ACAAAGCGTCAACACATGGG 59.332 50.000 0.00 0.00 0.00 4.00
201 202 3.859411 AAAGGAAACAAAGCGTCAACA 57.141 38.095 0.00 0.00 0.00 3.33
222 223 9.884636 TGATGAATAGATCGAAGGTTTTCTAAA 57.115 29.630 0.00 0.00 0.00 1.85
223 224 9.884636 TTGATGAATAGATCGAAGGTTTTCTAA 57.115 29.630 0.00 0.00 0.00 2.10
224 225 9.314321 GTTGATGAATAGATCGAAGGTTTTCTA 57.686 33.333 0.00 0.00 0.00 2.10
226 227 8.119226 CAGTTGATGAATAGATCGAAGGTTTTC 58.881 37.037 0.00 0.00 0.00 2.29
230 231 6.127338 TGACAGTTGATGAATAGATCGAAGGT 60.127 38.462 0.00 0.00 0.00 3.50
231 232 6.276091 TGACAGTTGATGAATAGATCGAAGG 58.724 40.000 0.00 0.00 0.00 3.46
232 233 7.704047 TCTTGACAGTTGATGAATAGATCGAAG 59.296 37.037 0.00 0.00 0.00 3.79
235 236 7.943413 ATCTTGACAGTTGATGAATAGATCG 57.057 36.000 0.00 0.00 0.00 3.69
289 290 2.600792 CGTCGCTAGGTGGTATACGAAC 60.601 54.545 0.00 0.00 0.00 3.95
296 297 1.066215 TGTAGTCGTCGCTAGGTGGTA 60.066 52.381 0.00 0.00 0.00 3.25
305 306 2.434134 CGGTGCTTGTAGTCGTCGC 61.434 63.158 0.00 0.00 0.00 5.19
341 342 4.740822 AGGGGCAATGACGGTGGC 62.741 66.667 0.00 0.00 40.67 5.01
344 345 2.198304 GAAGGAGGGGCAATGACGGT 62.198 60.000 0.00 0.00 0.00 4.83
361 362 2.942804 TGTTTGCCCAACTCTGATGAA 58.057 42.857 0.00 0.00 36.21 2.57
372 373 4.046286 AGGATACAAGAATGTTTGCCCA 57.954 40.909 0.00 0.00 41.05 5.36
384 385 3.933332 GACTTCCCGAACAAGGATACAAG 59.067 47.826 0.00 0.00 41.41 3.16
390 391 0.316204 GACGACTTCCCGAACAAGGA 59.684 55.000 0.00 0.00 0.00 3.36
458 459 8.579863 CCTCTTTGGTTCATAGAAAAATTGTCT 58.420 33.333 0.00 0.00 0.00 3.41
459 460 7.329471 GCCTCTTTGGTTCATAGAAAAATTGTC 59.671 37.037 0.00 0.00 38.35 3.18
460 461 7.154656 GCCTCTTTGGTTCATAGAAAAATTGT 58.845 34.615 0.00 0.00 38.35 2.71
461 462 6.591448 GGCCTCTTTGGTTCATAGAAAAATTG 59.409 38.462 0.00 0.00 38.35 2.32
462 463 6.498303 AGGCCTCTTTGGTTCATAGAAAAATT 59.502 34.615 0.00 0.00 38.35 1.82
463 464 6.019108 AGGCCTCTTTGGTTCATAGAAAAAT 58.981 36.000 0.00 0.00 38.35 1.82
466 467 4.657814 AGGCCTCTTTGGTTCATAGAAA 57.342 40.909 0.00 0.00 38.35 2.52
489 502 9.232473 GGTTGGAATTATAGAGACATAAATCCC 57.768 37.037 7.25 0.00 38.73 3.85
510 523 9.650539 TGTAATTGAATGATTGTATTTGGTTGG 57.349 29.630 0.00 0.00 0.00 3.77
554 567 3.384146 TGCCATGTGTTTCAATGACTGTT 59.616 39.130 0.00 0.00 0.00 3.16
556 569 3.646611 TGCCATGTGTTTCAATGACTG 57.353 42.857 0.00 0.00 0.00 3.51
559 572 5.471556 AGAAATGCCATGTGTTTCAATGA 57.528 34.783 13.67 0.00 35.00 2.57
560 573 5.121142 GGAAGAAATGCCATGTGTTTCAATG 59.879 40.000 13.67 0.00 35.00 2.82
561 574 5.221682 TGGAAGAAATGCCATGTGTTTCAAT 60.222 36.000 13.67 5.62 35.00 2.57
562 575 4.100653 TGGAAGAAATGCCATGTGTTTCAA 59.899 37.500 13.67 0.00 35.00 2.69
563 576 3.640498 TGGAAGAAATGCCATGTGTTTCA 59.360 39.130 13.67 0.00 35.00 2.69
564 577 4.255833 TGGAAGAAATGCCATGTGTTTC 57.744 40.909 0.00 0.00 33.24 2.78
565 578 4.686191 TTGGAAGAAATGCCATGTGTTT 57.314 36.364 0.00 0.00 33.46 2.83
566 579 4.895668 ATTGGAAGAAATGCCATGTGTT 57.104 36.364 0.00 0.00 33.46 3.32
567 580 4.618927 CGAATTGGAAGAAATGCCATGTGT 60.619 41.667 0.00 0.00 33.46 3.72
568 581 3.861113 CGAATTGGAAGAAATGCCATGTG 59.139 43.478 0.00 0.00 33.46 3.21
569 582 3.676873 GCGAATTGGAAGAAATGCCATGT 60.677 43.478 0.00 0.00 33.46 3.21
570 583 2.861935 GCGAATTGGAAGAAATGCCATG 59.138 45.455 0.00 0.00 33.46 3.66
571 584 2.496871 TGCGAATTGGAAGAAATGCCAT 59.503 40.909 0.00 0.00 33.46 4.40
572 585 1.891811 TGCGAATTGGAAGAAATGCCA 59.108 42.857 0.00 0.00 0.00 4.92
573 586 2.652941 TGCGAATTGGAAGAAATGCC 57.347 45.000 0.00 0.00 0.00 4.40
574 587 4.988708 TTTTGCGAATTGGAAGAAATGC 57.011 36.364 0.00 0.00 0.00 3.56
600 613 8.948145 CGTATACAGAGTATGCTAGAAATACCT 58.052 37.037 3.32 6.73 31.98 3.08
621 634 2.473816 CTGTACGGGAGTCGACGTATA 58.526 52.381 17.83 15.01 45.75 1.47
649 662 4.456566 GGAGACAACGAGAGATCCTATACC 59.543 50.000 0.00 0.00 0.00 2.73
651 664 4.104261 TGGGAGACAACGAGAGATCCTATA 59.896 45.833 0.00 0.00 0.00 1.31
652 665 3.117474 TGGGAGACAACGAGAGATCCTAT 60.117 47.826 0.00 0.00 0.00 2.57
713 726 1.154908 CACTTCCGTTTCGCGTTCG 60.155 57.895 5.77 9.58 39.32 3.95
717 730 0.387622 TAGTCCACTTCCGTTTCGCG 60.388 55.000 0.00 0.00 40.95 5.87
719 732 2.719426 ACTAGTCCACTTCCGTTTCG 57.281 50.000 0.00 0.00 0.00 3.46
736 749 0.035881 TGCTGCTGCTGCTTTCTACT 59.964 50.000 27.67 0.00 40.48 2.57
786 804 3.812019 CGTGTCGACGGAGGGGAG 61.812 72.222 11.62 0.00 42.18 4.30
840 868 1.498865 CTCCTCTCTCTCGCTCGCTC 61.499 65.000 0.00 0.00 0.00 5.03
1319 1372 0.179029 GAGAGAGAGGGAGAGACGGG 60.179 65.000 0.00 0.00 0.00 5.28
1322 1375 4.020128 GGAGATAGAGAGAGAGGGAGAGAC 60.020 54.167 0.00 0.00 0.00 3.36
1323 1376 4.168101 GGAGATAGAGAGAGAGGGAGAGA 58.832 52.174 0.00 0.00 0.00 3.10
1324 1377 3.264450 GGGAGATAGAGAGAGAGGGAGAG 59.736 56.522 0.00 0.00 0.00 3.20
1327 1380 2.354328 GGGGAGATAGAGAGAGAGGGA 58.646 57.143 0.00 0.00 0.00 4.20
1331 1384 1.783979 GGTGGGGGAGATAGAGAGAGA 59.216 57.143 0.00 0.00 0.00 3.10
1335 1389 1.675936 GGGGGTGGGGGAGATAGAGA 61.676 65.000 0.00 0.00 0.00 3.10
1340 1394 3.370277 TACGGGGGTGGGGGAGAT 61.370 66.667 0.00 0.00 0.00 2.75
1341 1395 4.084147 CTACGGGGGTGGGGGAGA 62.084 72.222 0.00 0.00 0.00 3.71
1349 1403 0.042281 AAACTAGAGGCTACGGGGGT 59.958 55.000 0.00 0.00 0.00 4.95
1352 1406 0.751452 GGGAAACTAGAGGCTACGGG 59.249 60.000 0.00 0.00 0.00 5.28
1410 1466 3.800685 TATCGATTGCGCGGGTGGG 62.801 63.158 8.83 0.00 37.46 4.61
1411 1467 1.227999 AATATCGATTGCGCGGGTGG 61.228 55.000 8.83 0.00 37.46 4.61
1412 1468 0.163788 GAATATCGATTGCGCGGGTG 59.836 55.000 8.83 0.00 37.46 4.61
1416 1472 1.139989 ACCTGAATATCGATTGCGCG 58.860 50.000 1.71 0.00 37.46 6.86
1474 1530 3.265272 AAGGAGGCTGTGCAGAGGC 62.265 63.158 27.65 27.65 41.68 4.70
1479 1535 1.841302 AATCGGAAGGAGGCTGTGCA 61.841 55.000 0.00 0.00 0.00 4.57
1504 1561 4.954970 ACCACCAACAGCCTGCCG 62.955 66.667 0.00 0.00 0.00 5.69
1532 1589 2.104792 CACCCCAGACACGGAATATGAT 59.895 50.000 0.00 0.00 0.00 2.45
1534 1591 1.475034 CCACCCCAGACACGGAATATG 60.475 57.143 0.00 0.00 0.00 1.78
1544 1601 1.182667 GCCATAAAACCACCCCAGAC 58.817 55.000 0.00 0.00 0.00 3.51
1550 1607 0.817654 GCTGGAGCCATAAAACCACC 59.182 55.000 0.00 0.00 34.31 4.61
1553 1610 1.312371 TGCGCTGGAGCCATAAAACC 61.312 55.000 9.73 0.00 37.91 3.27
1628 1685 2.939460 ATTTATTCACGGTTGGCTGC 57.061 45.000 0.00 0.00 0.00 5.25
1651 1708 0.899720 TCCGAACGCCACCTAATCTT 59.100 50.000 0.00 0.00 0.00 2.40
1653 1710 1.949465 ATTCCGAACGCCACCTAATC 58.051 50.000 0.00 0.00 0.00 1.75
1726 1811 8.667463 CCAAATTGTGTCTGAATCAAACTTTTT 58.333 29.630 0.00 0.00 0.00 1.94
1727 1812 7.280652 CCCAAATTGTGTCTGAATCAAACTTTT 59.719 33.333 0.00 0.00 0.00 2.27
1861 1950 4.223477 TCTCCCCGGATTAATTATAACCCG 59.777 45.833 0.73 4.47 46.17 5.28
1980 2069 1.073763 ACAACAGCAGAATAGCACCCA 59.926 47.619 0.00 0.00 36.85 4.51
2024 2123 4.271049 CGATGGCCACTAATAACAAGACTG 59.729 45.833 8.16 0.00 0.00 3.51
2025 2124 4.161565 TCGATGGCCACTAATAACAAGACT 59.838 41.667 8.16 0.00 0.00 3.24
2026 2125 4.439057 TCGATGGCCACTAATAACAAGAC 58.561 43.478 8.16 0.00 0.00 3.01
2027 2126 4.746535 TCGATGGCCACTAATAACAAGA 57.253 40.909 8.16 0.00 0.00 3.02
2028 2127 5.178252 CAGATCGATGGCCACTAATAACAAG 59.822 44.000 8.16 0.00 0.00 3.16
2029 2128 5.056480 CAGATCGATGGCCACTAATAACAA 58.944 41.667 8.16 0.00 0.00 2.83
2030 2129 4.631131 CAGATCGATGGCCACTAATAACA 58.369 43.478 8.16 0.00 0.00 2.41
2031 2130 3.433615 GCAGATCGATGGCCACTAATAAC 59.566 47.826 8.16 0.00 0.00 1.89
2032 2131 3.557054 GGCAGATCGATGGCCACTAATAA 60.557 47.826 25.33 0.00 46.92 1.40
2033 2132 2.028112 GGCAGATCGATGGCCACTAATA 60.028 50.000 25.33 0.00 46.92 0.98
2034 2133 1.271054 GGCAGATCGATGGCCACTAAT 60.271 52.381 25.33 0.28 46.92 1.73
2166 2268 8.561738 AACACCACAAGGAAACAATATACTAG 57.438 34.615 0.00 0.00 38.69 2.57
2172 2274 4.956700 TCCAAACACCACAAGGAAACAATA 59.043 37.500 0.00 0.00 38.69 1.90
2190 2298 4.842531 TTATCATCTGCAGTCCTCCAAA 57.157 40.909 14.67 0.00 0.00 3.28
2209 2317 1.565759 ACCAAGGGAGCATGCAGATTA 59.434 47.619 21.98 0.00 0.00 1.75
2212 2320 1.001764 CACCAAGGGAGCATGCAGA 60.002 57.895 21.98 0.00 0.00 4.26
2244 2353 7.148755 CCCATAGAAAACGCAAATTTCAAAGAG 60.149 37.037 8.13 0.00 38.86 2.85
2249 2358 5.713792 TCCCATAGAAAACGCAAATTTCA 57.286 34.783 8.13 0.00 38.86 2.69
2250 2359 8.755018 CAATATCCCATAGAAAACGCAAATTTC 58.245 33.333 0.00 0.00 37.11 2.17
2292 2401 4.916041 TCCACCAGACAAGAAATCTCAT 57.084 40.909 0.00 0.00 0.00 2.90
2319 2428 2.949451 AGTCAAGCCGTAGACATCAG 57.051 50.000 0.00 0.00 37.23 2.90
2330 2439 6.861572 GGTGTAAAATACTCAAAAGTCAAGCC 59.138 38.462 0.00 0.00 36.92 4.35
2357 2475 7.571025 AGTTTACAGAGGGAGTACTTTTCAAA 58.429 34.615 0.00 0.00 0.00 2.69
2367 2485 9.939424 ACTCTTATATTAGTTTACAGAGGGAGT 57.061 33.333 0.00 0.00 32.21 3.85
2369 2487 9.710818 ACACTCTTATATTAGTTTACAGAGGGA 57.289 33.333 2.59 0.00 34.50 4.20
2416 2534 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
2417 2535 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
2418 2536 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
2419 2537 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
2420 2538 7.013655 TCCTCCGTAAACTAATATAAGAGCGTT 59.986 37.037 0.00 0.00 0.00 4.84
2421 2539 6.488006 TCCTCCGTAAACTAATATAAGAGCGT 59.512 38.462 0.00 0.00 0.00 5.07
2422 2540 6.906659 TCCTCCGTAAACTAATATAAGAGCG 58.093 40.000 0.00 0.00 0.00 5.03
2423 2541 8.358895 ACTTCCTCCGTAAACTAATATAAGAGC 58.641 37.037 0.00 0.00 0.00 4.09
2430 2548 9.247861 AGAAACTACTTCCTCCGTAAACTAATA 57.752 33.333 0.00 0.00 34.21 0.98
2431 2549 8.131847 AGAAACTACTTCCTCCGTAAACTAAT 57.868 34.615 0.00 0.00 34.21 1.73
2432 2550 7.530426 AGAAACTACTTCCTCCGTAAACTAA 57.470 36.000 0.00 0.00 34.21 2.24
2433 2551 8.814038 ATAGAAACTACTTCCTCCGTAAACTA 57.186 34.615 0.00 0.00 34.21 2.24
2434 2552 7.614974 AGATAGAAACTACTTCCTCCGTAAACT 59.385 37.037 0.00 0.00 34.21 2.66
2435 2553 7.701501 CAGATAGAAACTACTTCCTCCGTAAAC 59.298 40.741 0.00 0.00 34.21 2.01
2436 2554 7.613022 TCAGATAGAAACTACTTCCTCCGTAAA 59.387 37.037 0.00 0.00 34.21 2.01
2437 2555 7.114754 TCAGATAGAAACTACTTCCTCCGTAA 58.885 38.462 0.00 0.00 34.21 3.18
2438 2556 6.656902 TCAGATAGAAACTACTTCCTCCGTA 58.343 40.000 0.00 0.00 34.21 4.02
2439 2557 5.507637 TCAGATAGAAACTACTTCCTCCGT 58.492 41.667 0.00 0.00 34.21 4.69
2440 2558 6.452494 TTCAGATAGAAACTACTTCCTCCG 57.548 41.667 0.00 0.00 34.21 4.63
2441 2559 8.141268 CAGATTCAGATAGAAACTACTTCCTCC 58.859 40.741 0.00 0.00 37.26 4.30
2442 2560 8.908903 TCAGATTCAGATAGAAACTACTTCCTC 58.091 37.037 0.00 0.00 37.26 3.71
2443 2561 8.830915 TCAGATTCAGATAGAAACTACTTCCT 57.169 34.615 0.00 0.00 37.26 3.36
2444 2562 9.474920 CATCAGATTCAGATAGAAACTACTTCC 57.525 37.037 0.00 0.00 37.26 3.46
2445 2563 9.474920 CCATCAGATTCAGATAGAAACTACTTC 57.525 37.037 0.00 0.00 37.26 3.01
2690 2809 7.472334 AAATTGAGAGTTTATGCAGGAATGT 57.528 32.000 0.00 0.00 0.00 2.71
2698 2817 8.804743 CATGATCACAAAATTGAGAGTTTATGC 58.195 33.333 0.00 0.00 31.54 3.14
2911 3031 0.458370 GACCAACCATTTGCCGATGC 60.458 55.000 0.00 0.00 38.26 3.91
3043 3163 1.886542 GGCTGTTGGTCCCTTACTTTG 59.113 52.381 0.00 0.00 0.00 2.77
3145 3265 6.997476 TCACAAAGCTATGTATTGCATATGGA 59.003 34.615 4.56 0.00 39.16 3.41
3319 3445 1.001520 TCGAAGCGGGAAACAAGATCA 59.998 47.619 0.00 0.00 0.00 2.92
3486 3612 3.463048 AGGACGACCCCTCTTAGTTTA 57.537 47.619 0.00 0.00 36.73 2.01
3516 3642 0.578683 CGCGTATGCCTGACAGAATG 59.421 55.000 3.32 0.00 39.58 2.67
3622 3756 5.961395 TGATTAGAAGAATAAACGACCGC 57.039 39.130 0.00 0.00 0.00 5.68
3689 3823 3.521995 CAGCACTGGACATTCGACT 57.478 52.632 0.00 0.00 0.00 4.18
3883 4020 4.819630 TGGCGGGAACTATCATATGTTTTC 59.180 41.667 1.90 1.94 0.00 2.29
3903 4043 1.802508 GCACCAACAAGTTCTTGTGGC 60.803 52.381 17.16 14.34 34.99 5.01
3923 4063 0.177604 GCATCAGGAGTCCAGGACAG 59.822 60.000 22.31 8.51 34.60 3.51
3979 4122 1.679977 TCAGCATTTGGAGCAGGCC 60.680 57.895 0.00 0.00 0.00 5.19
4075 4218 8.317679 AGTGACCATAAAGCATATCCTAATCTC 58.682 37.037 0.00 0.00 0.00 2.75
4082 4225 4.202461 TGGGAGTGACCATAAAGCATATCC 60.202 45.833 0.00 0.00 41.20 2.59
4133 4277 1.470098 GTGCCCTGACATGTGATTCAC 59.530 52.381 1.15 9.93 34.56 3.18
4321 4465 2.815647 CCTTTGTCGCTCGCTCCC 60.816 66.667 0.00 0.00 0.00 4.30
4484 4632 3.491652 GCGACTGGCTTCTTCGGC 61.492 66.667 0.00 0.00 39.11 5.54
4486 4634 3.181967 CCGCGACTGGCTTCTTCG 61.182 66.667 8.23 0.00 40.44 3.79
4599 4755 0.249398 CCTGTCTAACCCTGAACCCG 59.751 60.000 0.00 0.00 0.00 5.28
4606 4762 1.207791 CATGGAGCCTGTCTAACCCT 58.792 55.000 0.00 0.00 0.00 4.34
4810 4973 0.877649 CTGACAGCACACGAAGCACT 60.878 55.000 0.00 0.00 0.00 4.40
4815 4978 1.595109 CTGCCTGACAGCACACGAA 60.595 57.895 0.00 0.00 40.19 3.85
4834 4997 1.462731 GCAGACACCCAAATGCCACA 61.463 55.000 0.00 0.00 32.49 4.17
4844 5007 3.674997 TGAAACTATGAAGCAGACACCC 58.325 45.455 0.00 0.00 0.00 4.61
4873 5036 3.181491 CCCAGACAAGAAGCAAAACGAAA 60.181 43.478 0.00 0.00 0.00 3.46
4874 5037 2.357637 CCCAGACAAGAAGCAAAACGAA 59.642 45.455 0.00 0.00 0.00 3.85
4875 5038 1.946768 CCCAGACAAGAAGCAAAACGA 59.053 47.619 0.00 0.00 0.00 3.85
4876 5039 1.676006 ACCCAGACAAGAAGCAAAACG 59.324 47.619 0.00 0.00 0.00 3.60
4877 5040 3.447742 CAACCCAGACAAGAAGCAAAAC 58.552 45.455 0.00 0.00 0.00 2.43
4878 5041 2.159114 GCAACCCAGACAAGAAGCAAAA 60.159 45.455 0.00 0.00 0.00 2.44
4934 5097 8.099537 GGTTAAGGTTAAGTAGTTTAAGCCTCT 58.900 37.037 5.52 0.00 46.17 3.69
4936 5099 7.881751 CAGGTTAAGGTTAAGTAGTTTAAGCCT 59.118 37.037 5.52 0.00 46.17 4.58
4939 5102 7.881751 AGGCAGGTTAAGGTTAAGTAGTTTAAG 59.118 37.037 0.00 0.00 32.07 1.85
4940 5103 7.662669 CAGGCAGGTTAAGGTTAAGTAGTTTAA 59.337 37.037 0.00 0.00 0.00 1.52
4941 5104 7.163441 CAGGCAGGTTAAGGTTAAGTAGTTTA 58.837 38.462 0.00 0.00 0.00 2.01
4942 5105 6.002082 CAGGCAGGTTAAGGTTAAGTAGTTT 58.998 40.000 0.00 0.00 0.00 2.66
4943 5106 5.557866 CAGGCAGGTTAAGGTTAAGTAGTT 58.442 41.667 0.00 0.00 0.00 2.24
4944 5107 4.565028 GCAGGCAGGTTAAGGTTAAGTAGT 60.565 45.833 0.00 0.00 0.00 2.73
4945 5108 3.939592 GCAGGCAGGTTAAGGTTAAGTAG 59.060 47.826 0.00 0.00 0.00 2.57
4946 5109 3.328343 TGCAGGCAGGTTAAGGTTAAGTA 59.672 43.478 0.00 0.00 0.00 2.24
4973 5171 6.119536 TCACACTGTTGTAGACCAAGAATTT 58.880 36.000 0.00 0.00 33.30 1.82
5046 5274 4.266714 GGGTTTATCATTCCCGAAAGACA 58.733 43.478 0.00 0.00 0.00 3.41
5048 5276 3.893521 GGGGTTTATCATTCCCGAAAGA 58.106 45.455 0.00 0.00 41.92 2.52
5056 5284 4.408694 CAAACGTTCGGGGTTTATCATTC 58.591 43.478 0.00 0.00 35.93 2.67
5057 5285 3.191791 CCAAACGTTCGGGGTTTATCATT 59.808 43.478 0.00 0.00 35.93 2.57
5058 5286 2.750712 CCAAACGTTCGGGGTTTATCAT 59.249 45.455 0.00 0.00 35.93 2.45
5059 5287 2.152830 CCAAACGTTCGGGGTTTATCA 58.847 47.619 0.00 0.00 35.93 2.15
5060 5288 1.469703 CCCAAACGTTCGGGGTTTATC 59.530 52.381 17.13 0.00 38.95 1.75
5061 5289 1.073603 TCCCAAACGTTCGGGGTTTAT 59.926 47.619 24.05 0.00 43.29 1.40
5062 5290 0.471617 TCCCAAACGTTCGGGGTTTA 59.528 50.000 24.05 8.82 43.29 2.01
5063 5291 0.178984 ATCCCAAACGTTCGGGGTTT 60.179 50.000 24.05 15.00 43.29 3.27
5064 5292 0.178984 AATCCCAAACGTTCGGGGTT 60.179 50.000 24.05 20.85 41.20 4.11
5065 5293 0.178984 AAATCCCAAACGTTCGGGGT 60.179 50.000 24.05 15.27 43.29 4.95
5066 5294 0.242555 CAAATCCCAAACGTTCGGGG 59.757 55.000 24.05 24.55 43.29 5.73
5067 5295 1.068816 GTCAAATCCCAAACGTTCGGG 60.069 52.381 18.84 18.84 44.60 5.14
5068 5296 1.068816 GGTCAAATCCCAAACGTTCGG 60.069 52.381 0.00 0.00 0.00 4.30
5069 5297 1.604755 TGGTCAAATCCCAAACGTTCG 59.395 47.619 0.00 0.00 0.00 3.95
5070 5298 3.934457 ATGGTCAAATCCCAAACGTTC 57.066 42.857 0.00 0.00 35.14 3.95
5071 5299 3.192633 GCTATGGTCAAATCCCAAACGTT 59.807 43.478 0.00 0.00 35.14 3.99
5072 5300 2.752903 GCTATGGTCAAATCCCAAACGT 59.247 45.455 0.00 0.00 35.14 3.99
5073 5301 2.752354 TGCTATGGTCAAATCCCAAACG 59.248 45.455 0.00 0.00 35.14 3.60
5074 5302 4.799564 TTGCTATGGTCAAATCCCAAAC 57.200 40.909 0.00 0.00 35.14 2.93
5075 5303 5.976458 GATTTGCTATGGTCAAATCCCAAA 58.024 37.500 19.04 3.40 46.92 3.28
5076 5304 5.596836 GATTTGCTATGGTCAAATCCCAA 57.403 39.130 19.04 0.00 46.92 4.12
5082 5310 9.868277 AAAAATATTCGATTTGCTATGGTCAAA 57.132 25.926 0.00 2.28 37.75 2.69
5105 5333 6.994221 TCCCGAACTAAATTTGCCATAAAAA 58.006 32.000 0.00 0.00 0.00 1.94
5106 5334 6.591750 TCCCGAACTAAATTTGCCATAAAA 57.408 33.333 0.00 0.00 0.00 1.52
5107 5335 6.783708 ATCCCGAACTAAATTTGCCATAAA 57.216 33.333 0.00 0.00 0.00 1.40
5108 5336 6.783708 AATCCCGAACTAAATTTGCCATAA 57.216 33.333 0.00 0.00 0.00 1.90
5109 5337 6.378564 TCAAATCCCGAACTAAATTTGCCATA 59.621 34.615 0.00 0.00 38.42 2.74
5110 5338 5.186797 TCAAATCCCGAACTAAATTTGCCAT 59.813 36.000 0.00 0.00 38.42 4.40
5111 5339 4.524714 TCAAATCCCGAACTAAATTTGCCA 59.475 37.500 0.00 0.00 38.42 4.92
5112 5340 4.862574 GTCAAATCCCGAACTAAATTTGCC 59.137 41.667 0.00 0.00 38.42 4.52
5113 5341 4.862574 GGTCAAATCCCGAACTAAATTTGC 59.137 41.667 0.00 0.00 38.42 3.68
5114 5342 6.019779 TGGTCAAATCCCGAACTAAATTTG 57.980 37.500 0.00 0.00 39.38 2.32
5115 5343 6.850752 ATGGTCAAATCCCGAACTAAATTT 57.149 33.333 0.00 0.00 0.00 1.82
5116 5344 6.039382 GCTATGGTCAAATCCCGAACTAAATT 59.961 38.462 0.00 0.00 0.00 1.82
5117 5345 5.531287 GCTATGGTCAAATCCCGAACTAAAT 59.469 40.000 0.00 0.00 0.00 1.40
5118 5346 4.879545 GCTATGGTCAAATCCCGAACTAAA 59.120 41.667 0.00 0.00 0.00 1.85
5119 5347 4.080807 TGCTATGGTCAAATCCCGAACTAA 60.081 41.667 0.00 0.00 0.00 2.24
5120 5348 3.452990 TGCTATGGTCAAATCCCGAACTA 59.547 43.478 0.00 0.00 0.00 2.24
5121 5349 2.238646 TGCTATGGTCAAATCCCGAACT 59.761 45.455 0.00 0.00 0.00 3.01
5122 5350 2.639065 TGCTATGGTCAAATCCCGAAC 58.361 47.619 0.00 0.00 0.00 3.95
5123 5351 3.358111 TTGCTATGGTCAAATCCCGAA 57.642 42.857 0.00 0.00 0.00 4.30
5124 5352 3.358111 TTTGCTATGGTCAAATCCCGA 57.642 42.857 0.00 0.00 0.00 5.14
5125 5353 4.228912 GATTTGCTATGGTCAAATCCCG 57.771 45.455 19.04 0.00 46.92 5.14
5129 5357 6.024552 ACGTTTGATTTGCTATGGTCAAAT 57.975 33.333 9.88 9.88 44.19 2.32
5130 5358 5.446143 ACGTTTGATTTGCTATGGTCAAA 57.554 34.783 0.00 0.00 38.01 2.69
5131 5359 5.446143 AACGTTTGATTTGCTATGGTCAA 57.554 34.783 0.00 0.00 0.00 3.18
5132 5360 5.446143 AAACGTTTGATTTGCTATGGTCA 57.554 34.783 13.81 0.00 0.00 4.02
5133 5361 5.059221 CGAAAACGTTTGATTTGCTATGGTC 59.941 40.000 15.46 2.48 0.00 4.02
5139 5367 3.980775 CCATCGAAAACGTTTGATTTGCT 59.019 39.130 15.46 0.00 35.94 3.91
5141 5369 3.733224 TGCCATCGAAAACGTTTGATTTG 59.267 39.130 15.46 10.27 35.94 2.32
5147 5375 6.830114 TTAAAATTGCCATCGAAAACGTTT 57.170 29.167 7.96 7.96 0.00 3.60
5157 5385 5.879237 TCTCGTGTCATTAAAATTGCCATC 58.121 37.500 0.00 0.00 0.00 3.51
5158 5386 5.895636 TCTCGTGTCATTAAAATTGCCAT 57.104 34.783 0.00 0.00 0.00 4.40
5175 5403 5.240623 TGTCAATTAAACTTGCCATTCTCGT 59.759 36.000 0.00 0.00 0.00 4.18
5180 5408 4.236935 CGCTGTCAATTAAACTTGCCATT 58.763 39.130 0.00 0.00 0.00 3.16
5185 5413 2.979813 GCCACGCTGTCAATTAAACTTG 59.020 45.455 0.00 0.00 0.00 3.16
5193 5421 2.297033 AGAAAATTGCCACGCTGTCAAT 59.703 40.909 0.00 0.00 32.36 2.57
5200 5428 0.599728 TTGCCAGAAAATTGCCACGC 60.600 50.000 0.00 0.00 0.00 5.34
5201 5429 1.863267 TTTGCCAGAAAATTGCCACG 58.137 45.000 0.00 0.00 0.00 4.94
5202 5430 3.465871 TCTTTTGCCAGAAAATTGCCAC 58.534 40.909 0.00 0.00 0.00 5.01
5203 5431 3.834489 TCTTTTGCCAGAAAATTGCCA 57.166 38.095 0.00 0.00 0.00 4.92
5204 5432 5.120674 GTGTATCTTTTGCCAGAAAATTGCC 59.879 40.000 0.00 0.00 0.00 4.52
5206 5434 9.132521 CTTAGTGTATCTTTTGCCAGAAAATTG 57.867 33.333 0.00 0.00 0.00 2.32
5207 5435 7.814587 GCTTAGTGTATCTTTTGCCAGAAAATT 59.185 33.333 0.00 0.00 0.00 1.82
5208 5436 7.039784 TGCTTAGTGTATCTTTTGCCAGAAAAT 60.040 33.333 0.00 0.00 0.00 1.82
5209 5437 6.264292 TGCTTAGTGTATCTTTTGCCAGAAAA 59.736 34.615 0.00 0.00 0.00 2.29
5210 5438 5.767665 TGCTTAGTGTATCTTTTGCCAGAAA 59.232 36.000 0.00 0.00 0.00 2.52
5211 5439 5.181245 GTGCTTAGTGTATCTTTTGCCAGAA 59.819 40.000 0.00 0.00 0.00 3.02
5212 5440 4.695455 GTGCTTAGTGTATCTTTTGCCAGA 59.305 41.667 0.00 0.00 0.00 3.86
5213 5441 4.455533 TGTGCTTAGTGTATCTTTTGCCAG 59.544 41.667 0.00 0.00 0.00 4.85
5214 5442 4.393834 TGTGCTTAGTGTATCTTTTGCCA 58.606 39.130 0.00 0.00 0.00 4.92
5215 5443 4.695455 TCTGTGCTTAGTGTATCTTTTGCC 59.305 41.667 0.00 0.00 0.00 4.52
5216 5444 5.862924 TCTGTGCTTAGTGTATCTTTTGC 57.137 39.130 0.00 0.00 0.00 3.68
5217 5445 7.272084 GCAAATCTGTGCTTAGTGTATCTTTTG 59.728 37.037 0.00 0.00 41.51 2.44
5218 5446 7.308435 GCAAATCTGTGCTTAGTGTATCTTTT 58.692 34.615 0.00 0.00 41.51 2.27
5219 5447 6.127897 GGCAAATCTGTGCTTAGTGTATCTTT 60.128 38.462 0.00 0.00 44.31 2.52
5220 5448 5.355350 GGCAAATCTGTGCTTAGTGTATCTT 59.645 40.000 0.00 0.00 44.31 2.40
5221 5449 4.878397 GGCAAATCTGTGCTTAGTGTATCT 59.122 41.667 0.00 0.00 44.31 1.98
5222 5450 4.635765 TGGCAAATCTGTGCTTAGTGTATC 59.364 41.667 0.00 0.00 44.31 2.24
5223 5451 4.588899 TGGCAAATCTGTGCTTAGTGTAT 58.411 39.130 0.00 0.00 44.31 2.29
5224 5452 4.014569 TGGCAAATCTGTGCTTAGTGTA 57.985 40.909 0.00 0.00 44.31 2.90
5225 5453 2.862541 TGGCAAATCTGTGCTTAGTGT 58.137 42.857 0.00 0.00 44.31 3.55
5226 5454 3.766151 CATGGCAAATCTGTGCTTAGTG 58.234 45.455 0.00 0.00 44.31 2.74
5227 5455 2.165030 GCATGGCAAATCTGTGCTTAGT 59.835 45.455 0.00 0.00 44.31 2.24
5228 5456 2.793585 CGCATGGCAAATCTGTGCTTAG 60.794 50.000 6.90 0.00 44.31 2.18
5229 5457 1.132834 CGCATGGCAAATCTGTGCTTA 59.867 47.619 6.90 0.00 44.31 3.09
5230 5458 0.108992 CGCATGGCAAATCTGTGCTT 60.109 50.000 6.90 0.00 44.31 3.91
5231 5459 1.509463 CGCATGGCAAATCTGTGCT 59.491 52.632 6.90 0.00 44.31 4.40
5232 5460 2.162754 GCGCATGGCAAATCTGTGC 61.163 57.895 0.30 8.41 44.14 4.57
5233 5461 1.870458 CGCGCATGGCAAATCTGTG 60.870 57.895 8.75 0.00 43.84 3.66
5234 5462 2.257286 GACGCGCATGGCAAATCTGT 62.257 55.000 5.73 0.00 43.84 3.41
5235 5463 1.584483 GACGCGCATGGCAAATCTG 60.584 57.895 5.73 0.00 43.84 2.90
5236 5464 1.585267 TTGACGCGCATGGCAAATCT 61.585 50.000 5.73 0.00 43.84 2.40
5237 5465 1.154054 TTGACGCGCATGGCAAATC 60.154 52.632 5.73 0.00 43.84 2.17
5238 5466 1.444212 GTTGACGCGCATGGCAAAT 60.444 52.632 5.73 0.00 43.84 2.32
5239 5467 2.050533 GTTGACGCGCATGGCAAA 60.051 55.556 5.73 0.00 43.84 3.68
5240 5468 2.069465 AAAGTTGACGCGCATGGCAA 62.069 50.000 5.73 3.28 43.84 4.52
5241 5469 2.551006 AAAGTTGACGCGCATGGCA 61.551 52.632 5.73 0.00 43.84 4.92
5242 5470 2.082366 CAAAGTTGACGCGCATGGC 61.082 57.895 5.73 0.00 38.69 4.40
5243 5471 2.082366 GCAAAGTTGACGCGCATGG 61.082 57.895 5.73 0.00 0.00 3.66
5244 5472 2.082366 GGCAAAGTTGACGCGCATG 61.082 57.895 5.73 1.75 0.00 4.06
5245 5473 1.865788 ATGGCAAAGTTGACGCGCAT 61.866 50.000 5.73 0.00 39.74 4.73
5246 5474 2.456594 GATGGCAAAGTTGACGCGCA 62.457 55.000 5.73 1.71 39.74 6.09
5247 5475 1.797537 GATGGCAAAGTTGACGCGC 60.798 57.895 5.73 0.00 39.74 6.86
5248 5476 1.154225 GGATGGCAAAGTTGACGCG 60.154 57.895 3.53 3.53 39.74 6.01
5249 5477 0.169009 GAGGATGGCAAAGTTGACGC 59.831 55.000 0.00 0.00 39.74 5.19
5250 5478 0.443869 CGAGGATGGCAAAGTTGACG 59.556 55.000 0.00 0.00 39.74 4.35
5251 5479 0.169009 GCGAGGATGGCAAAGTTGAC 59.831 55.000 0.00 0.00 40.68 3.18
5252 5480 1.298157 CGCGAGGATGGCAAAGTTGA 61.298 55.000 0.00 0.00 41.24 3.18
5253 5481 1.135315 CGCGAGGATGGCAAAGTTG 59.865 57.895 0.00 0.00 41.24 3.16
5254 5482 1.298859 GACGCGAGGATGGCAAAGTT 61.299 55.000 15.93 0.00 41.24 2.66
5255 5483 1.741770 GACGCGAGGATGGCAAAGT 60.742 57.895 15.93 0.00 41.24 2.66
5256 5484 1.091771 ATGACGCGAGGATGGCAAAG 61.092 55.000 15.93 0.00 41.24 2.77
5257 5485 0.676466 AATGACGCGAGGATGGCAAA 60.676 50.000 15.93 0.00 41.24 3.68
5258 5486 0.176910 TAATGACGCGAGGATGGCAA 59.823 50.000 15.93 0.00 41.24 4.52
5259 5487 0.176910 TTAATGACGCGAGGATGGCA 59.823 50.000 15.93 0.00 41.24 4.92
5260 5488 1.295792 TTTAATGACGCGAGGATGGC 58.704 50.000 15.93 0.00 36.02 4.40
5261 5489 4.282068 CAATTTTAATGACGCGAGGATGG 58.718 43.478 15.93 0.00 0.00 3.51
5262 5490 3.725740 GCAATTTTAATGACGCGAGGATG 59.274 43.478 15.93 0.00 0.00 3.51
5263 5491 3.376859 TGCAATTTTAATGACGCGAGGAT 59.623 39.130 15.93 0.00 0.00 3.24
5264 5492 2.744741 TGCAATTTTAATGACGCGAGGA 59.255 40.909 15.93 0.00 0.00 3.71
5273 5501 6.155691 ACGCTTGTCATTGCAATTTTAATG 57.844 33.333 9.83 0.00 36.00 1.90
5274 5502 6.399880 CGAACGCTTGTCATTGCAATTTTAAT 60.400 34.615 9.83 0.00 0.00 1.40
5275 5503 5.108065 CGAACGCTTGTCATTGCAATTTTAA 60.108 36.000 9.83 4.17 0.00 1.52
5285 5513 3.120199 CCTGAAATCGAACGCTTGTCATT 60.120 43.478 0.00 0.00 0.00 2.57
5286 5514 2.416547 CCTGAAATCGAACGCTTGTCAT 59.583 45.455 0.00 0.00 0.00 3.06
5288 5516 1.128692 CCCTGAAATCGAACGCTTGTC 59.871 52.381 0.00 0.00 0.00 3.18
5289 5517 1.156736 CCCTGAAATCGAACGCTTGT 58.843 50.000 0.00 0.00 0.00 3.16
5290 5518 1.128692 GACCCTGAAATCGAACGCTTG 59.871 52.381 0.00 0.00 0.00 4.01
5291 5519 1.439679 GACCCTGAAATCGAACGCTT 58.560 50.000 0.00 0.00 0.00 4.68
5293 5521 0.672401 TGGACCCTGAAATCGAACGC 60.672 55.000 0.00 0.00 0.00 4.84
5295 5523 2.678336 GACATGGACCCTGAAATCGAAC 59.322 50.000 3.49 0.00 0.00 3.95
5298 5526 2.698855 AGACATGGACCCTGAAATCG 57.301 50.000 3.49 0.00 0.00 3.34
5324 5586 9.771534 TGTGATATATGAAATGGATTCGTTGTA 57.228 29.630 0.00 0.00 41.18 2.41
5397 5663 1.374758 GGACCAGTTGACAGAGGCG 60.375 63.158 0.00 0.00 0.00 5.52
5415 5681 6.267242 GGGACCTCCTATAGTTAGTTAGTTGG 59.733 46.154 0.00 0.00 35.95 3.77
5420 5686 6.183361 CCTCAGGGACCTCCTATAGTTAGTTA 60.183 46.154 0.00 0.00 46.12 2.24
5445 5715 0.822121 GGACACCTTCCACCACAACC 60.822 60.000 0.00 0.00 45.10 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.