Multiple sequence alignment - TraesCS6D01G342400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G342400 chr6D 100.000 6813 0 0 1 6813 441744901 441751713 0.000000e+00 12582.0
1 TraesCS6D01G342400 chr6D 96.306 758 25 3 128 884 427236652 427237407 0.000000e+00 1242.0
2 TraesCS6D01G342400 chr6D 94.220 173 8 1 6593 6763 97856420 97856592 5.240000e-66 263.0
3 TraesCS6D01G342400 chr6D 96.850 127 2 2 1 126 427235526 427235651 1.930000e-50 211.0
4 TraesCS6D01G342400 chr6D 90.722 97 9 0 5683 5779 441750493 441750589 5.550000e-26 130.0
5 TraesCS6D01G342400 chr6D 90.722 97 9 0 5593 5689 441750583 441750679 5.550000e-26 130.0
6 TraesCS6D01G342400 chr6A 97.665 5397 84 12 889 6283 591013519 591018875 0.000000e+00 9230.0
7 TraesCS6D01G342400 chr6A 96.310 271 10 0 6324 6594 591018877 591019147 4.850000e-121 446.0
8 TraesCS6D01G342400 chr6A 90.722 97 9 0 5683 5779 591018185 591018281 5.550000e-26 130.0
9 TraesCS6D01G342400 chr6A 89.691 97 10 0 5593 5689 591018275 591018371 2.580000e-24 124.0
10 TraesCS6D01G342400 chr6A 100.000 60 0 0 6754 6813 591019146 591019205 2.010000e-20 111.0
11 TraesCS6D01G342400 chr6B 98.645 3026 32 4 3576 6594 667774462 667777485 0.000000e+00 5352.0
12 TraesCS6D01G342400 chr6B 97.106 2661 60 10 889 3541 667771669 667774320 0.000000e+00 4471.0
13 TraesCS6D01G342400 chr6B 90.722 97 9 0 5683 5779 667776483 667776579 5.550000e-26 130.0
14 TraesCS6D01G342400 chr6B 90.722 97 9 0 5593 5689 667776573 667776669 5.550000e-26 130.0
15 TraesCS6D01G342400 chr6B 100.000 60 0 0 6754 6813 667777484 667777543 2.010000e-20 111.0
16 TraesCS6D01G342400 chr6B 98.000 50 1 0 3539 3588 667774416 667774367 3.380000e-13 87.9
17 TraesCS6D01G342400 chr6B 92.308 39 3 0 6555 6593 557930412 557930374 1.000000e-03 56.5
18 TraesCS6D01G342400 chr5D 96.306 758 26 2 128 884 432506092 432505336 0.000000e+00 1243.0
19 TraesCS6D01G342400 chr5D 95.641 757 33 0 128 884 454209638 454208882 0.000000e+00 1216.0
20 TraesCS6D01G342400 chr5D 96.850 127 2 2 1 126 446253491 446253366 1.930000e-50 211.0
21 TraesCS6D01G342400 chr5D 92.105 38 3 0 6555 6592 91340934 91340897 3.000000e-03 54.7
22 TraesCS6D01G342400 chr7D 95.905 757 31 0 128 884 460639404 460640160 0.000000e+00 1227.0
23 TraesCS6D01G342400 chr7D 95.773 757 32 0 128 884 550271898 550271142 0.000000e+00 1221.0
24 TraesCS6D01G342400 chr7D 91.803 183 13 1 6581 6761 384149015 384148833 3.150000e-63 254.0
25 TraesCS6D01G342400 chr7D 97.619 126 2 1 1 126 37281185 37281061 1.490000e-51 215.0
26 TraesCS6D01G342400 chr7D 97.600 125 2 1 2 126 602282994 602282871 5.350000e-51 213.0
27 TraesCS6D01G342400 chr3D 95.905 757 31 0 128 884 524198880 524198124 0.000000e+00 1227.0
28 TraesCS6D01G342400 chr3D 95.567 767 31 2 128 891 578844248 578843482 0.000000e+00 1225.0
29 TraesCS6D01G342400 chr3D 95.312 768 33 2 128 892 604394300 604393533 0.000000e+00 1216.0
30 TraesCS6D01G342400 chr3D 98.413 126 1 1 1 126 8303409 8303533 3.200000e-53 220.0
31 TraesCS6D01G342400 chr3D 97.638 127 1 2 1 126 365507687 365507812 4.140000e-52 217.0
32 TraesCS6D01G342400 chr3D 97.619 126 2 1 1 126 411638172 411638296 1.490000e-51 215.0
33 TraesCS6D01G342400 chr2D 95.773 757 29 2 128 884 556181084 556180331 0.000000e+00 1218.0
34 TraesCS6D01G342400 chr2D 97.638 127 1 2 1 126 620173687 620173812 4.140000e-52 217.0
35 TraesCS6D01G342400 chr1B 96.450 169 3 2 6591 6756 323683349 323683517 6.730000e-70 276.0
36 TraesCS6D01G342400 chr7B 96.364 165 4 1 6593 6755 393400862 393400698 3.130000e-68 270.0
37 TraesCS6D01G342400 chr4B 93.333 180 8 3 6590 6766 86060467 86060289 5.240000e-66 263.0
38 TraesCS6D01G342400 chr5A 94.675 169 7 1 6589 6755 290391693 290391861 1.880000e-65 261.0
39 TraesCS6D01G342400 chr7A 94.083 169 8 1 6589 6755 115807519 115807687 8.770000e-64 255.0
40 TraesCS6D01G342400 chr7A 94.872 39 2 0 6555 6593 288066223 288066261 2.050000e-05 62.1
41 TraesCS6D01G342400 chr4D 91.489 188 12 3 6576 6759 46028720 46028533 8.770000e-64 255.0
42 TraesCS6D01G342400 chr2B 90.050 201 12 6 6583 6775 52872752 52872952 3.150000e-63 254.0
43 TraesCS6D01G342400 chr1D 96.850 127 2 2 1 126 495408396 495408521 1.930000e-50 211.0
44 TraesCS6D01G342400 chr1D 94.595 37 2 0 6552 6588 376862013 376862049 2.650000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G342400 chr6D 441744901 441751713 6812 False 4280.666667 12582 93.814667 1 6813 3 chr6D.!!$F3 6812
1 TraesCS6D01G342400 chr6D 427235526 427237407 1881 False 726.500000 1242 96.578000 1 884 2 chr6D.!!$F2 883
2 TraesCS6D01G342400 chr6A 591013519 591019205 5686 False 2008.200000 9230 94.877600 889 6813 5 chr6A.!!$F1 5924
3 TraesCS6D01G342400 chr6B 667771669 667777543 5874 False 2038.800000 5352 95.439000 889 6813 5 chr6B.!!$F1 5924
4 TraesCS6D01G342400 chr5D 432505336 432506092 756 True 1243.000000 1243 96.306000 128 884 1 chr5D.!!$R2 756
5 TraesCS6D01G342400 chr5D 454208882 454209638 756 True 1216.000000 1216 95.641000 128 884 1 chr5D.!!$R4 756
6 TraesCS6D01G342400 chr7D 460639404 460640160 756 False 1227.000000 1227 95.905000 128 884 1 chr7D.!!$F1 756
7 TraesCS6D01G342400 chr7D 550271142 550271898 756 True 1221.000000 1221 95.773000 128 884 1 chr7D.!!$R3 756
8 TraesCS6D01G342400 chr3D 524198124 524198880 756 True 1227.000000 1227 95.905000 128 884 1 chr3D.!!$R1 756
9 TraesCS6D01G342400 chr3D 578843482 578844248 766 True 1225.000000 1225 95.567000 128 891 1 chr3D.!!$R2 763
10 TraesCS6D01G342400 chr3D 604393533 604394300 767 True 1216.000000 1216 95.312000 128 892 1 chr3D.!!$R3 764
11 TraesCS6D01G342400 chr2D 556180331 556181084 753 True 1218.000000 1218 95.773000 128 884 1 chr2D.!!$R1 756

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 1872 0.728542 GTTAATGTGGCCCGGTTACG 59.271 55.000 0.00 0.0 40.55 3.18 F
1699 2711 0.730265 CCGCGCACTTAATTGGCTTA 59.270 50.000 8.75 0.0 0.00 3.09 F
1700 2712 1.333619 CCGCGCACTTAATTGGCTTAT 59.666 47.619 8.75 0.0 0.00 1.73 F
3178 4214 0.526211 CCCTAGCGCCTTTTTGAACC 59.474 55.000 2.29 0.0 0.00 3.62 F
3461 4497 4.957684 AGCAATAGGAGTAAATAGCCGT 57.042 40.909 0.00 0.0 0.00 5.68 F
4538 5687 4.405116 ACAGTGCACATTTGAACCATTT 57.595 36.364 21.04 0.0 30.15 2.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2773 3788 1.299976 CTGCCGCCTAAACCTTCCT 59.700 57.895 0.00 0.0 0.00 3.36 R
3125 4140 0.107945 CACCTAGGGAGAGCAACAGC 60.108 60.000 14.81 0.0 0.00 4.40 R
3288 4324 1.852895 GATAGTAAGCCAGAACGCACG 59.147 52.381 0.00 0.0 0.00 5.34 R
4434 5583 3.859961 CAGCACAGAGAAACGTATTCGAT 59.140 43.478 0.00 0.0 40.62 3.59 R
5002 6151 5.961272 TCAAGCTCGTAACTGTCAATATCA 58.039 37.500 0.00 0.0 0.00 2.15 R
6333 7482 5.091552 TCTAGAGAACAAAAGGGAGCCTAA 58.908 41.667 0.00 0.0 31.13 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 5.711976 CCCCTCCATCGATATTAGCATTTTT 59.288 40.000 0.00 0.00 0.00 1.94
478 1480 1.677552 GCTCGGGGAACAGGAGAAA 59.322 57.895 0.00 0.00 35.21 2.52
660 1664 8.602472 ATCTCTACTCCTAAATTCTCAGTTGT 57.398 34.615 0.00 0.00 0.00 3.32
720 1724 0.855855 TGAGGGAGAGGGGGAGAGAA 60.856 60.000 0.00 0.00 0.00 2.87
730 1734 2.200955 GGGGGAGAGAAAGTGAGGAAT 58.799 52.381 0.00 0.00 0.00 3.01
738 1742 4.016105 AGAGAAAGTGAGGAATAGGGAGGA 60.016 45.833 0.00 0.00 0.00 3.71
752 1756 1.640917 GGAGGAAGAGGGTGTGTGTA 58.359 55.000 0.00 0.00 0.00 2.90
860 1866 5.128992 ACTTTTAAAGTTAATGTGGCCCG 57.871 39.130 4.30 0.00 39.04 6.13
864 1870 2.883122 AAGTTAATGTGGCCCGGTTA 57.117 45.000 0.00 0.00 0.00 2.85
866 1872 0.728542 GTTAATGTGGCCCGGTTACG 59.271 55.000 0.00 0.00 40.55 3.18
872 1878 4.825252 GGCCCGGTTACGACGCAT 62.825 66.667 0.00 0.00 44.60 4.73
886 1892 2.746277 GCATGGGCGTTCTTCGGT 60.746 61.111 0.00 0.00 40.26 4.69
887 1893 2.332654 GCATGGGCGTTCTTCGGTT 61.333 57.895 0.00 0.00 40.26 4.44
907 1913 1.668826 TGTATCAGGGCTCCAACCTT 58.331 50.000 0.00 0.00 35.78 3.50
1054 2060 4.424711 GCCGCTCCATCCCCAACA 62.425 66.667 0.00 0.00 0.00 3.33
1096 2102 1.598856 CCCCTTCTCCTCCTCTCCCT 61.599 65.000 0.00 0.00 0.00 4.20
1182 2188 1.540267 CTCTCCTTCGTCTTCGACCAA 59.460 52.381 0.00 0.00 46.03 3.67
1340 2352 3.710722 CGGCCAGCCAGAGAAGGT 61.711 66.667 9.78 0.00 35.37 3.50
1341 2353 2.270527 GGCCAGCCAGAGAAGGTC 59.729 66.667 3.12 0.00 35.81 3.85
1676 2688 2.094854 GGTTCGACATCCTCAAGTACGT 60.095 50.000 0.00 0.00 0.00 3.57
1684 2696 1.804326 CTCAAGTACGTTCCCCGCG 60.804 63.158 0.00 0.00 41.42 6.46
1699 2711 0.730265 CCGCGCACTTAATTGGCTTA 59.270 50.000 8.75 0.00 0.00 3.09
1700 2712 1.333619 CCGCGCACTTAATTGGCTTAT 59.666 47.619 8.75 0.00 0.00 1.73
2268 3281 5.696260 TCGAAAACAGTGAATACTATGCG 57.304 39.130 0.00 0.00 34.74 4.73
2773 3788 5.221028 CGGAATGCTGCATCTTGGTATTAAA 60.221 40.000 16.55 0.00 0.00 1.52
2787 3802 5.187687 TGGTATTAAAGGAAGGTTTAGGCG 58.812 41.667 0.00 0.00 0.00 5.52
2888 3903 3.576118 CACCCTCTCCGATGAGTATTCAT 59.424 47.826 0.00 0.00 46.61 2.57
2918 3933 5.073691 TCTGAAGGAAAATCACCCTCTTCTT 59.926 40.000 0.00 0.00 33.77 2.52
3122 4137 6.683090 TTTTTACATTTACGCATGTGCTTC 57.317 33.333 6.08 0.00 37.93 3.86
3123 4138 5.363979 TTTACATTTACGCATGTGCTTCA 57.636 34.783 6.08 0.00 37.93 3.02
3124 4139 3.913548 ACATTTACGCATGTGCTTCAA 57.086 38.095 6.08 0.00 35.97 2.69
3125 4140 3.825308 ACATTTACGCATGTGCTTCAAG 58.175 40.909 6.08 0.00 35.97 3.02
3178 4214 0.526211 CCCTAGCGCCTTTTTGAACC 59.474 55.000 2.29 0.00 0.00 3.62
3288 4324 9.620660 CAAATTATTTACTTACCTGACCACAAC 57.379 33.333 0.00 0.00 0.00 3.32
3461 4497 4.957684 AGCAATAGGAGTAAATAGCCGT 57.042 40.909 0.00 0.00 0.00 5.68
4538 5687 4.405116 ACAGTGCACATTTGAACCATTT 57.595 36.364 21.04 0.00 30.15 2.32
5002 6151 6.351711 TGATGATTTTGATGACGAAGAGGAT 58.648 36.000 0.00 0.00 0.00 3.24
5206 6355 3.370840 TTTGATGATCAACCCTCCCTG 57.629 47.619 7.48 0.00 35.89 4.45
6333 7482 4.574674 TTGGTTCTGTCCTCTTGCATAT 57.425 40.909 0.00 0.00 0.00 1.78
6390 7539 6.702282 GGTAGTCATTGGCTAGTTCATAACTC 59.298 42.308 0.00 0.00 41.77 3.01
6466 7615 2.076863 GTTCTTCAATACGCCTGCTGT 58.923 47.619 0.00 0.00 0.00 4.40
6468 7617 2.778299 TCTTCAATACGCCTGCTGTTT 58.222 42.857 0.00 0.00 0.00 2.83
6597 7747 9.372369 GTGTATGAATAGCTTTGGATATACTCC 57.628 37.037 0.00 0.00 45.19 3.85
6598 7748 8.540388 TGTATGAATAGCTTTGGATATACTCCC 58.460 37.037 0.00 0.00 44.23 4.30
6599 7749 7.821134 ATGAATAGCTTTGGATATACTCCCT 57.179 36.000 0.00 0.00 44.23 4.20
6600 7750 7.246171 TGAATAGCTTTGGATATACTCCCTC 57.754 40.000 0.00 0.00 44.23 4.30
6601 7751 6.213600 TGAATAGCTTTGGATATACTCCCTCC 59.786 42.308 0.00 0.00 44.23 4.30
6602 7752 2.900546 AGCTTTGGATATACTCCCTCCG 59.099 50.000 0.00 0.00 44.23 4.63
6603 7753 2.633481 GCTTTGGATATACTCCCTCCGT 59.367 50.000 0.00 0.00 44.23 4.69
6604 7754 3.071167 GCTTTGGATATACTCCCTCCGTT 59.929 47.826 0.00 0.00 44.23 4.44
6605 7755 4.799917 GCTTTGGATATACTCCCTCCGTTC 60.800 50.000 0.00 0.00 44.23 3.95
6606 7756 2.885616 TGGATATACTCCCTCCGTTCC 58.114 52.381 0.00 0.00 44.23 3.62
6607 7757 2.449730 TGGATATACTCCCTCCGTTCCT 59.550 50.000 0.00 0.00 44.23 3.36
6608 7758 3.659195 TGGATATACTCCCTCCGTTCCTA 59.341 47.826 0.00 0.00 44.23 2.94
6609 7759 4.106825 TGGATATACTCCCTCCGTTCCTAA 59.893 45.833 0.00 0.00 44.23 2.69
6610 7760 5.082425 GGATATACTCCCTCCGTTCCTAAA 58.918 45.833 0.00 0.00 38.19 1.85
6611 7761 5.720520 GGATATACTCCCTCCGTTCCTAAAT 59.279 44.000 0.00 0.00 38.19 1.40
6612 7762 6.894103 GGATATACTCCCTCCGTTCCTAAATA 59.106 42.308 0.00 0.00 38.19 1.40
6613 7763 7.564292 GGATATACTCCCTCCGTTCCTAAATAT 59.436 40.741 0.00 0.00 38.19 1.28
6614 7764 9.638176 GATATACTCCCTCCGTTCCTAAATATA 57.362 37.037 0.00 0.00 0.00 0.86
6615 7765 7.957992 ATACTCCCTCCGTTCCTAAATATAG 57.042 40.000 0.00 0.00 0.00 1.31
6638 7788 7.736447 AGGTCTTTGTAGAGATTTCAACAAG 57.264 36.000 0.00 0.00 33.70 3.16
6639 7789 7.283329 AGGTCTTTGTAGAGATTTCAACAAGT 58.717 34.615 0.00 0.00 33.70 3.16
6640 7790 7.227512 AGGTCTTTGTAGAGATTTCAACAAGTG 59.772 37.037 0.00 0.00 33.70 3.16
6641 7791 7.226720 GGTCTTTGTAGAGATTTCAACAAGTGA 59.773 37.037 0.00 0.00 33.70 3.41
6642 7792 8.064814 GTCTTTGTAGAGATTTCAACAAGTGAC 58.935 37.037 0.00 0.00 35.39 3.67
6643 7793 7.987458 TCTTTGTAGAGATTTCAACAAGTGACT 59.013 33.333 0.00 0.00 35.39 3.41
6644 7794 9.261180 CTTTGTAGAGATTTCAACAAGTGACTA 57.739 33.333 0.00 0.00 35.39 2.59
6645 7795 8.589335 TTGTAGAGATTTCAACAAGTGACTAC 57.411 34.615 0.00 0.00 35.39 2.73
6646 7796 7.722363 TGTAGAGATTTCAACAAGTGACTACA 58.278 34.615 0.00 0.00 37.97 2.74
6647 7797 8.367911 TGTAGAGATTTCAACAAGTGACTACAT 58.632 33.333 0.00 0.00 36.58 2.29
6648 7798 9.856488 GTAGAGATTTCAACAAGTGACTACATA 57.144 33.333 0.00 0.00 35.39 2.29
6649 7799 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
6650 7800 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
6651 7801 7.375834 AGATTTCAACAAGTGACTACATACGA 58.624 34.615 0.00 0.00 35.39 3.43
6652 7802 7.870954 AGATTTCAACAAGTGACTACATACGAA 59.129 33.333 0.00 0.00 35.39 3.85
6653 7803 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
6654 7804 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
6655 7805 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
6656 7806 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
6657 7807 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
6658 7808 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
6659 7809 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
6660 7810 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
6661 7811 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
6662 7812 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
6663 7813 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
6664 7814 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
6665 7815 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
6666 7816 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
6667 7817 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
6668 7818 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
6669 7819 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
6670 7820 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
6671 7821 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
6672 7822 5.163953 ACGAAGCAAAATGAGTGAATCTACG 60.164 40.000 0.00 0.00 0.00 3.51
6673 7823 4.606457 AGCAAAATGAGTGAATCTACGC 57.394 40.909 0.00 0.00 0.00 4.42
6674 7824 4.002982 AGCAAAATGAGTGAATCTACGCA 58.997 39.130 0.00 0.00 34.92 5.24
6675 7825 4.091424 GCAAAATGAGTGAATCTACGCAC 58.909 43.478 0.00 0.00 33.27 5.34
6677 7827 5.063438 GCAAAATGAGTGAATCTACGCACTA 59.937 40.000 0.00 0.00 44.77 2.74
6678 7828 6.402118 GCAAAATGAGTGAATCTACGCACTAA 60.402 38.462 0.00 0.00 44.77 2.24
6679 7829 7.518161 CAAAATGAGTGAATCTACGCACTAAA 58.482 34.615 0.00 0.00 44.77 1.85
6680 7830 7.667043 AAATGAGTGAATCTACGCACTAAAA 57.333 32.000 0.00 0.00 44.77 1.52
6681 7831 7.849804 AATGAGTGAATCTACGCACTAAAAT 57.150 32.000 0.00 0.00 44.77 1.82
6682 7832 8.942338 AATGAGTGAATCTACGCACTAAAATA 57.058 30.769 0.00 0.00 44.77 1.40
6683 7833 9.547753 AATGAGTGAATCTACGCACTAAAATAT 57.452 29.630 0.00 0.00 44.77 1.28
6684 7834 8.352752 TGAGTGAATCTACGCACTAAAATATG 57.647 34.615 0.00 0.00 44.77 1.78
6685 7835 7.979537 TGAGTGAATCTACGCACTAAAATATGT 59.020 33.333 0.00 0.00 44.77 2.29
6686 7836 8.354011 AGTGAATCTACGCACTAAAATATGTC 57.646 34.615 0.00 0.00 43.10 3.06
6687 7837 8.198109 AGTGAATCTACGCACTAAAATATGTCT 58.802 33.333 0.00 0.00 43.10 3.41
6688 7838 9.459640 GTGAATCTACGCACTAAAATATGTCTA 57.540 33.333 0.00 0.00 32.44 2.59
6709 7859 9.901172 TGTCTATATACATCCGTATGTGATAGT 57.099 33.333 17.08 3.55 45.99 2.12
6711 7861 9.557061 TCTATATACATCCGTATGTGATAGTCC 57.443 37.037 17.08 0.00 45.99 3.85
6712 7862 9.338622 CTATATACATCCGTATGTGATAGTCCA 57.661 37.037 3.56 0.00 45.99 4.02
6713 7863 8.768501 ATATACATCCGTATGTGATAGTCCAT 57.231 34.615 3.56 0.00 45.99 3.41
6714 7864 5.808366 ACATCCGTATGTGATAGTCCATT 57.192 39.130 0.00 0.00 44.79 3.16
6715 7865 6.174720 ACATCCGTATGTGATAGTCCATTT 57.825 37.500 0.00 0.00 44.79 2.32
6716 7866 5.991606 ACATCCGTATGTGATAGTCCATTTG 59.008 40.000 0.00 0.00 44.79 2.32
6717 7867 5.862678 TCCGTATGTGATAGTCCATTTGA 57.137 39.130 0.00 0.00 0.00 2.69
6718 7868 6.228616 TCCGTATGTGATAGTCCATTTGAA 57.771 37.500 0.00 0.00 0.00 2.69
6719 7869 6.645306 TCCGTATGTGATAGTCCATTTGAAA 58.355 36.000 0.00 0.00 0.00 2.69
6720 7870 7.279615 TCCGTATGTGATAGTCCATTTGAAAT 58.720 34.615 0.00 0.00 0.00 2.17
6721 7871 7.441157 TCCGTATGTGATAGTCCATTTGAAATC 59.559 37.037 0.00 0.00 0.00 2.17
6722 7872 7.442364 CCGTATGTGATAGTCCATTTGAAATCT 59.558 37.037 0.00 0.00 0.00 2.40
6723 7873 8.491152 CGTATGTGATAGTCCATTTGAAATCTC 58.509 37.037 0.00 0.00 0.00 2.75
6724 7874 9.553064 GTATGTGATAGTCCATTTGAAATCTCT 57.447 33.333 0.00 0.00 0.00 3.10
6727 7877 9.958180 TGTGATAGTCCATTTGAAATCTCTAAA 57.042 29.630 0.00 0.00 0.00 1.85
6733 7883 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
6746 7896 9.595823 TCTCTAAAAAGACATATTTAGGAACGG 57.404 33.333 5.68 0.00 38.85 4.44
6747 7897 9.595823 CTCTAAAAAGACATATTTAGGAACGGA 57.404 33.333 5.68 0.00 38.85 4.69
6748 7898 9.595823 TCTAAAAAGACATATTTAGGAACGGAG 57.404 33.333 5.68 0.00 38.85 4.63
6749 7899 7.625828 AAAAAGACATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
6750 7900 4.957684 AGACATATTTAGGAACGGAGGG 57.042 45.455 0.00 0.00 0.00 4.30
6751 7901 4.553678 AGACATATTTAGGAACGGAGGGA 58.446 43.478 0.00 0.00 0.00 4.20
6752 7902 4.589374 AGACATATTTAGGAACGGAGGGAG 59.411 45.833 0.00 0.00 0.00 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 4.351874 ACCCGAAGATCTCAGTTCAAAA 57.648 40.909 0.00 0.00 0.00 2.44
116 118 2.489938 TCCTCAACCCGGAAAGAATG 57.510 50.000 0.73 0.00 0.00 2.67
126 128 1.376037 CTGCCGTCTTCCTCAACCC 60.376 63.158 0.00 0.00 0.00 4.11
190 1191 1.012486 CCGAACGCCTTCGCTACTTT 61.012 55.000 11.72 0.00 46.72 2.66
649 1653 5.470047 AACGGAGACTAACAACTGAGAAT 57.530 39.130 0.00 0.00 0.00 2.40
650 1654 4.261909 GGAACGGAGACTAACAACTGAGAA 60.262 45.833 0.00 0.00 0.00 2.87
685 1689 0.106167 CTCACTCGGGAGGTGGGATA 60.106 60.000 0.00 0.00 37.35 2.59
686 1690 1.381872 CTCACTCGGGAGGTGGGAT 60.382 63.158 0.00 0.00 37.35 3.85
720 1724 4.294347 CTCTTCCTCCCTATTCCTCACTT 58.706 47.826 0.00 0.00 0.00 3.16
730 1734 0.790993 ACACACCCTCTTCCTCCCTA 59.209 55.000 0.00 0.00 0.00 3.53
738 1742 5.505181 AATTCTCATACACACACCCTCTT 57.495 39.130 0.00 0.00 0.00 2.85
752 1756 7.066284 CGACCTCTTTTACCATCAAATTCTCAT 59.934 37.037 0.00 0.00 0.00 2.90
872 1878 0.106335 TACAAACCGAAGAACGCCCA 59.894 50.000 0.00 0.00 41.07 5.36
884 1890 2.092323 GTTGGAGCCCTGATACAAACC 58.908 52.381 0.00 0.00 0.00 3.27
885 1891 2.092323 GGTTGGAGCCCTGATACAAAC 58.908 52.381 0.00 0.00 0.00 2.93
886 1892 1.992557 AGGTTGGAGCCCTGATACAAA 59.007 47.619 0.00 0.00 0.00 2.83
887 1893 1.668826 AGGTTGGAGCCCTGATACAA 58.331 50.000 0.00 0.00 0.00 2.41
907 1913 0.032952 CTCCTCGTGGGTTGTTTCGA 59.967 55.000 3.23 0.00 36.25 3.71
954 1960 1.127567 TTCTGTGTGTGGGAGGGGAG 61.128 60.000 0.00 0.00 0.00 4.30
1008 2014 3.296709 GAGCGTCAGGAAGCGGGAA 62.297 63.158 1.69 0.00 40.72 3.97
1054 2060 3.083997 GCGGTGGAGGAGGGATGT 61.084 66.667 0.00 0.00 0.00 3.06
1364 2376 2.283966 CCACCTCCTGTCCGACCT 60.284 66.667 0.00 0.00 0.00 3.85
1401 2413 1.299089 CACATCCGCGACGCTCATA 60.299 57.895 19.02 0.33 0.00 2.15
1676 2688 1.309499 CCAATTAAGTGCGCGGGGAA 61.309 55.000 8.83 0.00 0.00 3.97
1684 2696 7.885297 TCCATTGATATAAGCCAATTAAGTGC 58.115 34.615 0.00 0.00 31.25 4.40
1699 2711 8.687824 GTTTTCGTCAAACAATCCATTGATAT 57.312 30.769 6.29 0.00 43.93 1.63
2046 3058 6.826893 TTTCACTGCTTTAACAAGAAATGC 57.173 33.333 0.00 0.00 30.57 3.56
2204 3216 6.830912 TCTGTTATCATGTGCTTTAGGCTAT 58.169 36.000 0.00 0.00 42.39 2.97
2268 3281 9.478019 CTTGAATCGTAATGACAAAATCTGTAC 57.522 33.333 0.00 0.00 38.84 2.90
2306 3321 6.016024 ACACGAATACCAGTTTGTCTACAGTA 60.016 38.462 0.00 0.00 0.00 2.74
2311 3326 5.456548 TGACACGAATACCAGTTTGTCTA 57.543 39.130 0.00 0.00 35.45 2.59
2773 3788 1.299976 CTGCCGCCTAAACCTTCCT 59.700 57.895 0.00 0.00 0.00 3.36
2787 3802 2.808906 AGGTCAATTCCTTACCTGCC 57.191 50.000 0.00 0.00 42.08 4.85
2888 3903 4.074970 GGTGATTTTCCTTCAGAGAAGCA 58.925 43.478 1.29 0.00 33.03 3.91
2918 3933 1.207811 TGGCAGAGCTCGATTCATTGA 59.792 47.619 8.37 0.00 0.00 2.57
3112 4127 1.415374 CAACAGCTTGAAGCACATGC 58.585 50.000 20.45 11.69 45.56 4.06
3113 4128 1.000607 AGCAACAGCTTGAAGCACATG 60.001 47.619 20.45 14.63 45.56 3.21
3114 4129 1.268899 GAGCAACAGCTTGAAGCACAT 59.731 47.619 20.45 0.66 45.56 3.21
3115 4130 0.664761 GAGCAACAGCTTGAAGCACA 59.335 50.000 20.45 0.00 45.56 4.57
3116 4131 0.950116 AGAGCAACAGCTTGAAGCAC 59.050 50.000 20.45 3.17 45.56 4.40
3117 4132 1.233019 GAGAGCAACAGCTTGAAGCA 58.767 50.000 20.45 0.00 45.56 3.91
3118 4133 0.520847 GGAGAGCAACAGCTTGAAGC 59.479 55.000 9.59 9.59 42.84 3.86
3119 4134 1.163554 GGGAGAGCAACAGCTTGAAG 58.836 55.000 0.00 0.00 39.10 3.02
3120 4135 0.767375 AGGGAGAGCAACAGCTTGAA 59.233 50.000 0.00 0.00 39.10 2.69
3121 4136 1.552337 CTAGGGAGAGCAACAGCTTGA 59.448 52.381 0.00 0.00 39.10 3.02
3122 4137 1.406614 CCTAGGGAGAGCAACAGCTTG 60.407 57.143 0.00 0.00 39.10 4.01
3123 4138 0.908198 CCTAGGGAGAGCAACAGCTT 59.092 55.000 0.00 0.00 39.10 3.74
3124 4139 0.252467 ACCTAGGGAGAGCAACAGCT 60.252 55.000 14.81 0.00 42.41 4.24
3125 4140 0.107945 CACCTAGGGAGAGCAACAGC 60.108 60.000 14.81 0.00 0.00 4.40
3178 4214 5.710984 AGTGAGAAACTACACGTATCCAAG 58.289 41.667 0.00 0.00 41.22 3.61
3288 4324 1.852895 GATAGTAAGCCAGAACGCACG 59.147 52.381 0.00 0.00 0.00 5.34
4134 5277 6.314896 ACTTCAGAAAATAAGAATCGCTCCTG 59.685 38.462 0.00 0.00 0.00 3.86
4434 5583 3.859961 CAGCACAGAGAAACGTATTCGAT 59.140 43.478 0.00 0.00 40.62 3.59
5002 6151 5.961272 TCAAGCTCGTAACTGTCAATATCA 58.039 37.500 0.00 0.00 0.00 2.15
5206 6355 9.142515 CAAGAATCAGCAATATGACTAGATCTC 57.857 37.037 0.00 0.00 30.46 2.75
6333 7482 5.091552 TCTAGAGAACAAAAGGGAGCCTAA 58.908 41.667 0.00 0.00 31.13 2.69
6529 7679 7.802738 TGTTTACATGTATGAAAGAACTTCCG 58.197 34.615 6.36 0.00 32.53 4.30
6588 7738 6.854091 ATTTAGGAACGGAGGGAGTATATC 57.146 41.667 0.00 0.00 0.00 1.63
6612 7762 9.442047 CTTGTTGAAATCTCTACAAAGACCTAT 57.558 33.333 0.00 0.00 43.56 2.57
6613 7763 8.429641 ACTTGTTGAAATCTCTACAAAGACCTA 58.570 33.333 0.00 0.00 43.56 3.08
6614 7764 7.227512 CACTTGTTGAAATCTCTACAAAGACCT 59.772 37.037 0.00 0.00 43.56 3.85
6615 7765 7.226720 TCACTTGTTGAAATCTCTACAAAGACC 59.773 37.037 0.00 0.00 43.56 3.85
6616 7766 8.064814 GTCACTTGTTGAAATCTCTACAAAGAC 58.935 37.037 10.49 10.49 43.56 3.01
6617 7767 7.987458 AGTCACTTGTTGAAATCTCTACAAAGA 59.013 33.333 0.00 0.00 43.56 2.52
6618 7768 8.147642 AGTCACTTGTTGAAATCTCTACAAAG 57.852 34.615 0.00 0.00 43.56 2.77
6619 7769 9.042008 GTAGTCACTTGTTGAAATCTCTACAAA 57.958 33.333 0.00 0.00 43.56 2.83
6620 7770 8.201464 TGTAGTCACTTGTTGAAATCTCTACAA 58.799 33.333 0.00 0.00 42.53 2.41
6621 7771 7.722363 TGTAGTCACTTGTTGAAATCTCTACA 58.278 34.615 0.00 0.00 36.87 2.74
6622 7772 8.764524 ATGTAGTCACTTGTTGAAATCTCTAC 57.235 34.615 0.00 0.00 35.39 2.59
6623 7773 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
6624 7774 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
6625 7775 7.541091 TCGTATGTAGTCACTTGTTGAAATCTC 59.459 37.037 0.00 0.00 35.39 2.75
6626 7776 7.375834 TCGTATGTAGTCACTTGTTGAAATCT 58.624 34.615 0.00 0.00 35.39 2.40
6627 7777 7.576750 TCGTATGTAGTCACTTGTTGAAATC 57.423 36.000 0.00 0.00 35.39 2.17
6628 7778 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
6629 7779 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
6630 7780 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
6631 7781 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
6632 7782 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
6633 7783 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
6634 7784 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
6635 7785 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
6636 7786 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
6637 7787 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
6638 7788 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
6639 7789 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
6640 7790 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
6641 7791 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
6642 7792 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
6643 7793 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
6644 7794 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
6645 7795 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
6646 7796 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
6647 7797 6.034577 CGTAGATTCACTCATTTTGCTTCGTA 59.965 38.462 0.00 0.00 0.00 3.43
6648 7798 5.163953 CGTAGATTCACTCATTTTGCTTCGT 60.164 40.000 0.00 0.00 0.00 3.85
6649 7799 5.251081 CGTAGATTCACTCATTTTGCTTCG 58.749 41.667 0.00 0.00 0.00 3.79
6650 7800 5.024555 GCGTAGATTCACTCATTTTGCTTC 58.975 41.667 0.00 0.00 0.00 3.86
6651 7801 4.455533 TGCGTAGATTCACTCATTTTGCTT 59.544 37.500 0.00 0.00 0.00 3.91
6652 7802 4.002982 TGCGTAGATTCACTCATTTTGCT 58.997 39.130 0.00 0.00 0.00 3.91
6653 7803 4.091424 GTGCGTAGATTCACTCATTTTGC 58.909 43.478 0.00 0.00 0.00 3.68
6654 7804 5.536554 AGTGCGTAGATTCACTCATTTTG 57.463 39.130 0.00 0.00 39.11 2.44
6655 7805 7.667043 TTTAGTGCGTAGATTCACTCATTTT 57.333 32.000 0.00 0.00 42.06 1.82
6656 7806 7.667043 TTTTAGTGCGTAGATTCACTCATTT 57.333 32.000 0.00 0.00 42.06 2.32
6657 7807 7.849804 ATTTTAGTGCGTAGATTCACTCATT 57.150 32.000 0.00 0.00 42.06 2.57
6658 7808 8.982685 CATATTTTAGTGCGTAGATTCACTCAT 58.017 33.333 0.00 0.00 42.06 2.90
6659 7809 7.979537 ACATATTTTAGTGCGTAGATTCACTCA 59.020 33.333 0.00 0.00 42.06 3.41
6660 7810 8.354011 ACATATTTTAGTGCGTAGATTCACTC 57.646 34.615 0.00 0.00 42.06 3.51
6661 7811 8.198109 AGACATATTTTAGTGCGTAGATTCACT 58.802 33.333 0.00 0.00 44.76 3.41
6662 7812 8.354011 AGACATATTTTAGTGCGTAGATTCAC 57.646 34.615 0.00 0.00 0.00 3.18
6683 7833 9.901172 ACTATCACATACGGATGTATATAGACA 57.099 33.333 30.73 11.02 44.82 3.41
6685 7835 9.557061 GGACTATCACATACGGATGTATATAGA 57.443 37.037 30.73 19.35 44.82 1.98
6686 7836 9.338622 TGGACTATCACATACGGATGTATATAG 57.661 37.037 26.27 26.27 44.82 1.31
6687 7837 9.862149 ATGGACTATCACATACGGATGTATATA 57.138 33.333 14.23 12.96 44.82 0.86
6688 7838 8.768501 ATGGACTATCACATACGGATGTATAT 57.231 34.615 14.23 12.50 44.82 0.86
6689 7839 8.589701 AATGGACTATCACATACGGATGTATA 57.410 34.615 14.23 10.59 44.82 1.47
6690 7840 7.482169 AATGGACTATCACATACGGATGTAT 57.518 36.000 14.23 10.02 44.82 2.29
6691 7841 6.911250 AATGGACTATCACATACGGATGTA 57.089 37.500 14.23 2.61 44.82 2.29
6693 7843 6.223120 TCAAATGGACTATCACATACGGATG 58.777 40.000 5.94 5.94 39.16 3.51
6694 7844 6.419484 TCAAATGGACTATCACATACGGAT 57.581 37.500 0.00 0.00 0.00 4.18
6695 7845 5.862678 TCAAATGGACTATCACATACGGA 57.137 39.130 0.00 0.00 0.00 4.69
6696 7846 6.918892 TTTCAAATGGACTATCACATACGG 57.081 37.500 0.00 0.00 0.00 4.02
6697 7847 8.370493 AGATTTCAAATGGACTATCACATACG 57.630 34.615 0.00 0.00 0.00 3.06
6698 7848 9.553064 AGAGATTTCAAATGGACTATCACATAC 57.447 33.333 0.00 0.00 0.00 2.39
6701 7851 9.958180 TTTAGAGATTTCAAATGGACTATCACA 57.042 29.630 0.00 0.00 0.00 3.58
6707 7857 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
6720 7870 9.595823 CCGTTCCTAAATATGTCTTTTTAGAGA 57.404 33.333 4.45 0.00 37.53 3.10
6721 7871 9.595823 TCCGTTCCTAAATATGTCTTTTTAGAG 57.404 33.333 4.45 0.00 37.53 2.43
6722 7872 9.595823 CTCCGTTCCTAAATATGTCTTTTTAGA 57.404 33.333 4.45 0.00 37.53 2.10
6723 7873 8.827677 CCTCCGTTCCTAAATATGTCTTTTTAG 58.172 37.037 0.00 0.00 35.92 1.85
6724 7874 7.771826 CCCTCCGTTCCTAAATATGTCTTTTTA 59.228 37.037 0.00 0.00 0.00 1.52
6725 7875 6.602009 CCCTCCGTTCCTAAATATGTCTTTTT 59.398 38.462 0.00 0.00 0.00 1.94
6726 7876 6.069847 TCCCTCCGTTCCTAAATATGTCTTTT 60.070 38.462 0.00 0.00 0.00 2.27
6727 7877 5.427481 TCCCTCCGTTCCTAAATATGTCTTT 59.573 40.000 0.00 0.00 0.00 2.52
6728 7878 4.966805 TCCCTCCGTTCCTAAATATGTCTT 59.033 41.667 0.00 0.00 0.00 3.01
6729 7879 4.553678 TCCCTCCGTTCCTAAATATGTCT 58.446 43.478 0.00 0.00 0.00 3.41
6730 7880 4.344390 ACTCCCTCCGTTCCTAAATATGTC 59.656 45.833 0.00 0.00 0.00 3.06
6731 7881 4.296056 ACTCCCTCCGTTCCTAAATATGT 58.704 43.478 0.00 0.00 0.00 2.29
6732 7882 4.957684 ACTCCCTCCGTTCCTAAATATG 57.042 45.455 0.00 0.00 0.00 1.78
6733 7883 8.120538 TGATATACTCCCTCCGTTCCTAAATAT 58.879 37.037 0.00 0.00 0.00 1.28
6734 7884 7.472741 TGATATACTCCCTCCGTTCCTAAATA 58.527 38.462 0.00 0.00 0.00 1.40
6735 7885 6.320518 TGATATACTCCCTCCGTTCCTAAAT 58.679 40.000 0.00 0.00 0.00 1.40
6736 7886 5.708544 TGATATACTCCCTCCGTTCCTAAA 58.291 41.667 0.00 0.00 0.00 1.85
6737 7887 5.329191 TGATATACTCCCTCCGTTCCTAA 57.671 43.478 0.00 0.00 0.00 2.69
6738 7888 5.531753 ATGATATACTCCCTCCGTTCCTA 57.468 43.478 0.00 0.00 0.00 2.94
6739 7889 3.897657 TGATATACTCCCTCCGTTCCT 57.102 47.619 0.00 0.00 0.00 3.36
6740 7890 4.322801 CCAATGATATACTCCCTCCGTTCC 60.323 50.000 0.00 0.00 0.00 3.62
6741 7891 4.527038 TCCAATGATATACTCCCTCCGTTC 59.473 45.833 0.00 0.00 0.00 3.95
6742 7892 4.489737 TCCAATGATATACTCCCTCCGTT 58.510 43.478 0.00 0.00 0.00 4.44
6743 7893 4.127918 TCCAATGATATACTCCCTCCGT 57.872 45.455 0.00 0.00 0.00 4.69
6744 7894 4.711846 TCATCCAATGATATACTCCCTCCG 59.288 45.833 0.00 0.00 33.59 4.63
6745 7895 6.627087 TTCATCCAATGATATACTCCCTCC 57.373 41.667 0.00 0.00 39.39 4.30
6746 7896 8.954350 CAATTTCATCCAATGATATACTCCCTC 58.046 37.037 0.00 0.00 39.39 4.30
6747 7897 8.672329 TCAATTTCATCCAATGATATACTCCCT 58.328 33.333 0.00 0.00 39.39 4.20
6748 7898 8.868522 TCAATTTCATCCAATGATATACTCCC 57.131 34.615 0.00 0.00 39.39 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.