Multiple sequence alignment - TraesCS6D01G342100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G342100 chr6D 100.000 2786 0 0 1 2786 441524814 441527599 0.000000e+00 5145
1 TraesCS6D01G342100 chr6D 80.184 651 112 12 882 1529 441316743 441317379 3.250000e-129 472
2 TraesCS6D01G342100 chr6D 80.184 651 112 12 882 1529 441397605 441398241 3.250000e-129 472
3 TraesCS6D01G342100 chr6D 80.847 590 107 6 892 1477 441291265 441291852 2.530000e-125 459
4 TraesCS6D01G342100 chr6D 83.478 230 32 5 882 1109 441098647 441098872 2.810000e-50 209
5 TraesCS6D01G342100 chr6A 95.819 2081 56 15 1 2059 590042987 590045058 0.000000e+00 3332
6 TraesCS6D01G342100 chr6A 80.200 601 111 8 882 1477 589175230 589175827 7.080000e-121 444
7 TraesCS6D01G342100 chr6A 80.033 601 112 8 882 1477 589192434 589191837 3.290000e-119 438
8 TraesCS6D01G342100 chr6A 83.887 391 49 8 2409 2786 15737363 15737752 7.340000e-96 361
9 TraesCS6D01G342100 chr6A 93.590 156 3 2 2126 2281 590045330 590045478 2.790000e-55 226
10 TraesCS6D01G342100 chr6B 93.818 1828 95 10 233 2050 666773719 666775538 0.000000e+00 2734
11 TraesCS6D01G342100 chr6B 88.626 211 7 8 2071 2281 666775529 666775722 9.970000e-60 241
12 TraesCS6D01G342100 chr3A 84.926 471 69 2 994 1463 552434316 552434785 2.510000e-130 475
13 TraesCS6D01G342100 chr3D 84.176 455 63 5 2338 2786 362059808 362059357 1.530000e-117 433
14 TraesCS6D01G342100 chr3D 85.156 384 44 5 2414 2785 476327186 476327568 5.630000e-102 381
15 TraesCS6D01G342100 chr5A 83.871 465 54 12 2338 2786 576581076 576580617 9.220000e-115 424
16 TraesCS6D01G342100 chr5A 79.800 401 65 12 2399 2785 90216828 90216430 7.600000e-71 278
17 TraesCS6D01G342100 chr2D 81.860 430 57 14 2372 2786 576207374 576207797 2.660000e-90 342
18 TraesCS6D01G342100 chr2D 80.435 460 76 8 2339 2786 250626421 250625964 3.440000e-89 339
19 TraesCS6D01G342100 chr2D 79.823 451 73 10 2350 2786 476826022 476825576 2.080000e-81 313
20 TraesCS6D01G342100 chr4A 79.111 450 76 8 2350 2786 471711728 471711284 7.550000e-76 294


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G342100 chr6D 441524814 441527599 2785 False 5145.0 5145 100.0000 1 2786 1 chr6D.!!$F5 2785
1 TraesCS6D01G342100 chr6D 441316743 441317379 636 False 472.0 472 80.1840 882 1529 1 chr6D.!!$F3 647
2 TraesCS6D01G342100 chr6D 441397605 441398241 636 False 472.0 472 80.1840 882 1529 1 chr6D.!!$F4 647
3 TraesCS6D01G342100 chr6D 441291265 441291852 587 False 459.0 459 80.8470 892 1477 1 chr6D.!!$F2 585
4 TraesCS6D01G342100 chr6A 590042987 590045478 2491 False 1779.0 3332 94.7045 1 2281 2 chr6A.!!$F3 2280
5 TraesCS6D01G342100 chr6A 589175230 589175827 597 False 444.0 444 80.2000 882 1477 1 chr6A.!!$F2 595
6 TraesCS6D01G342100 chr6A 589191837 589192434 597 True 438.0 438 80.0330 882 1477 1 chr6A.!!$R1 595
7 TraesCS6D01G342100 chr6B 666773719 666775722 2003 False 1487.5 2734 91.2220 233 2281 2 chr6B.!!$F1 2048

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
177 180 0.179065 GGTATGGCTACCGGTGAACC 60.179 60.0 19.93 16.22 38.23 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2063 2098 0.532115 AATTTCAATGGCTCACCCGC 59.468 50.0 0.0 0.0 35.87 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.798976 TGGAGTACGTAGTTGCGTTT 57.201 45.000 4.03 0.00 37.78 3.60
29 30 1.723003 GGAGTACGTAGTTGCGTTTGG 59.277 52.381 4.03 0.00 37.78 3.28
31 32 2.796593 GAGTACGTAGTTGCGTTTGGTT 59.203 45.455 4.03 0.00 37.78 3.67
32 33 2.540931 AGTACGTAGTTGCGTTTGGTTG 59.459 45.455 0.00 0.00 37.78 3.77
38 39 0.248866 GTTGCGTTTGGTTGGGACTG 60.249 55.000 0.00 0.00 0.00 3.51
42 43 1.170290 CGTTTGGTTGGGACTGGACC 61.170 60.000 0.00 0.00 0.00 4.46
74 75 3.181434 TGAGGTCAGGCAAAAGTAACCAT 60.181 43.478 0.00 0.00 0.00 3.55
101 104 3.081804 GTCACCACTTTGTCCCATAAGG 58.918 50.000 0.00 0.00 0.00 2.69
128 131 3.676598 CGTATTGTACCAATGACGGGTCA 60.677 47.826 3.69 3.69 44.59 4.02
142 145 2.224426 ACGGGTCAACTAGTGCAATTGA 60.224 45.455 10.34 1.42 0.00 2.57
165 168 1.993370 CGCTAGCGATAAAGGTATGGC 59.007 52.381 32.98 0.00 40.66 4.40
177 180 0.179065 GGTATGGCTACCGGTGAACC 60.179 60.000 19.93 16.22 38.23 3.62
185 189 2.681344 GCTACCGGTGAACCCTATTTTG 59.319 50.000 19.93 0.00 0.00 2.44
188 192 0.815095 CGGTGAACCCTATTTTGGCC 59.185 55.000 0.00 0.00 0.00 5.36
189 193 1.191535 GGTGAACCCTATTTTGGCCC 58.808 55.000 0.00 0.00 0.00 5.80
196 200 1.408702 CCCTATTTTGGCCCGTTGATG 59.591 52.381 0.00 0.00 0.00 3.07
202 206 0.251564 TTGGCCCGTTGATGGTGAAT 60.252 50.000 0.00 0.00 0.00 2.57
203 207 0.251564 TGGCCCGTTGATGGTGAATT 60.252 50.000 0.00 0.00 0.00 2.17
325 342 6.456447 GTGAAACCACATTCAATTCACATG 57.544 37.500 10.98 0.00 45.63 3.21
384 401 4.733230 GCATAACCAATCGCTGTAATTGCA 60.733 41.667 0.00 0.00 33.65 4.08
388 405 3.315191 ACCAATCGCTGTAATTGCATACC 59.685 43.478 0.00 0.00 33.65 2.73
449 466 4.562757 GCCTTCCTGGATAATATGCGTACA 60.563 45.833 0.00 0.00 38.35 2.90
687 710 4.728882 GCGAGCATTCTTGTGTTAATGAGG 60.729 45.833 0.00 0.00 35.53 3.86
750 775 5.407084 GCTAGCTAGCTAGGCAGTAAAAATC 59.593 44.000 39.60 21.91 45.62 2.17
944 970 3.181443 CCACTATAAATCCACCCCTCCAC 60.181 52.174 0.00 0.00 0.00 4.02
959 985 1.304052 CCACCCTCGCCCAAATCAA 60.304 57.895 0.00 0.00 0.00 2.57
977 1003 4.519906 TCAACAACTTTCCTTCCCTTCT 57.480 40.909 0.00 0.00 0.00 2.85
1431 1458 1.823295 CGTCGGATGGAAGGTGGAT 59.177 57.895 0.00 0.00 0.00 3.41
1546 1573 0.180642 CAGCAGCATGGAGGATCACT 59.819 55.000 0.00 0.00 36.25 3.41
1791 1821 1.410004 TCCCTCCCATGTAAGCTACG 58.590 55.000 0.00 0.00 0.00 3.51
1795 1825 2.288273 CCTCCCATGTAAGCTACGCTAC 60.288 54.545 0.00 0.00 38.25 3.58
1815 1845 2.045326 ACCTACCTAGGATGGTGGTGAA 59.955 50.000 22.98 0.00 46.63 3.18
1889 1924 5.913514 CGATCTCGGTCACGTTCTTATTTAT 59.086 40.000 0.00 0.00 41.85 1.40
2075 2110 4.189539 TTTTTGCGGGTGAGCCAT 57.810 50.000 0.08 0.00 36.17 4.40
2076 2111 2.435418 TTTTTGCGGGTGAGCCATT 58.565 47.368 0.08 0.00 36.17 3.16
2077 2112 0.033228 TTTTTGCGGGTGAGCCATTG 59.967 50.000 0.08 0.00 36.17 2.82
2078 2113 0.825425 TTTTGCGGGTGAGCCATTGA 60.825 50.000 0.08 0.00 36.17 2.57
2079 2114 0.825425 TTTGCGGGTGAGCCATTGAA 60.825 50.000 0.08 0.00 36.17 2.69
2080 2115 0.825425 TTGCGGGTGAGCCATTGAAA 60.825 50.000 0.08 0.00 36.17 2.69
2081 2116 0.611618 TGCGGGTGAGCCATTGAAAT 60.612 50.000 0.08 0.00 36.17 2.17
2082 2117 0.532115 GCGGGTGAGCCATTGAAATT 59.468 50.000 0.08 0.00 36.17 1.82
2083 2118 1.736696 GCGGGTGAGCCATTGAAATTG 60.737 52.381 0.08 0.00 36.17 2.32
2084 2119 1.545582 CGGGTGAGCCATTGAAATTGT 59.454 47.619 0.08 0.00 36.17 2.71
2085 2120 2.029110 CGGGTGAGCCATTGAAATTGTT 60.029 45.455 0.08 0.00 36.17 2.83
2086 2121 3.192422 CGGGTGAGCCATTGAAATTGTTA 59.808 43.478 0.08 0.00 36.17 2.41
2087 2122 4.142182 CGGGTGAGCCATTGAAATTGTTAT 60.142 41.667 0.08 0.00 36.17 1.89
2088 2123 5.624281 CGGGTGAGCCATTGAAATTGTTATT 60.624 40.000 0.08 0.00 36.17 1.40
2111 2146 4.771577 TCAGATGATCTCTTCCATAGGCTC 59.228 45.833 0.00 0.00 29.16 4.70
2112 2147 4.773674 CAGATGATCTCTTCCATAGGCTCT 59.226 45.833 0.00 0.00 29.16 4.09
2113 2148 5.246656 CAGATGATCTCTTCCATAGGCTCTT 59.753 44.000 0.00 0.00 29.16 2.85
2114 2149 5.481473 AGATGATCTCTTCCATAGGCTCTTC 59.519 44.000 0.00 0.00 0.00 2.87
2115 2150 3.571828 TGATCTCTTCCATAGGCTCTTCG 59.428 47.826 0.00 0.00 0.00 3.79
2116 2151 3.019799 TCTCTTCCATAGGCTCTTCGT 57.980 47.619 0.00 0.00 0.00 3.85
2117 2152 3.366396 TCTCTTCCATAGGCTCTTCGTT 58.634 45.455 0.00 0.00 0.00 3.85
2118 2153 3.769844 TCTCTTCCATAGGCTCTTCGTTT 59.230 43.478 0.00 0.00 0.00 3.60
2119 2154 3.861840 TCTTCCATAGGCTCTTCGTTTG 58.138 45.455 0.00 0.00 0.00 2.93
2120 2155 3.513912 TCTTCCATAGGCTCTTCGTTTGA 59.486 43.478 0.00 0.00 0.00 2.69
2121 2156 4.162320 TCTTCCATAGGCTCTTCGTTTGAT 59.838 41.667 0.00 0.00 0.00 2.57
2122 2157 4.060038 TCCATAGGCTCTTCGTTTGATC 57.940 45.455 0.00 0.00 0.00 2.92
2123 2158 3.706594 TCCATAGGCTCTTCGTTTGATCT 59.293 43.478 0.00 0.00 0.00 2.75
2124 2159 4.893524 TCCATAGGCTCTTCGTTTGATCTA 59.106 41.667 0.00 0.00 0.00 1.98
2281 2522 0.795085 GCAGTCAACTAGCACAGCTG 59.205 55.000 13.48 13.48 40.10 4.24
2282 2523 1.606480 GCAGTCAACTAGCACAGCTGA 60.606 52.381 23.35 0.00 40.10 4.26
2283 2524 2.335752 CAGTCAACTAGCACAGCTGAG 58.664 52.381 23.35 14.77 40.10 3.35
2284 2525 1.967066 AGTCAACTAGCACAGCTGAGT 59.033 47.619 23.35 10.62 40.10 3.41
2285 2526 2.366916 AGTCAACTAGCACAGCTGAGTT 59.633 45.455 23.35 16.43 40.10 3.01
2286 2527 3.574396 AGTCAACTAGCACAGCTGAGTTA 59.426 43.478 23.35 14.24 40.10 2.24
2287 2528 4.039245 AGTCAACTAGCACAGCTGAGTTAA 59.961 41.667 23.35 2.37 40.10 2.01
2288 2529 4.150804 GTCAACTAGCACAGCTGAGTTAAC 59.849 45.833 23.35 11.93 40.10 2.01
2289 2530 4.039245 TCAACTAGCACAGCTGAGTTAACT 59.961 41.667 23.35 8.13 40.10 2.24
2290 2531 3.919216 ACTAGCACAGCTGAGTTAACTG 58.081 45.455 23.35 7.34 40.10 3.16
2291 2532 1.517242 AGCACAGCTGAGTTAACTGC 58.483 50.000 23.35 17.63 37.57 4.40
2292 2533 0.519077 GCACAGCTGAGTTAACTGCC 59.481 55.000 23.35 0.00 34.72 4.85
2293 2534 0.792640 CACAGCTGAGTTAACTGCCG 59.207 55.000 23.35 6.24 34.72 5.69
2294 2535 0.393077 ACAGCTGAGTTAACTGCCGT 59.607 50.000 23.35 6.91 34.72 5.68
2295 2536 1.071605 CAGCTGAGTTAACTGCCGTC 58.928 55.000 14.14 0.00 35.80 4.79
2296 2537 0.969894 AGCTGAGTTAACTGCCGTCT 59.030 50.000 14.14 0.03 35.80 4.18
2297 2538 1.067495 AGCTGAGTTAACTGCCGTCTC 60.067 52.381 14.14 0.00 35.80 3.36
2298 2539 1.067495 GCTGAGTTAACTGCCGTCTCT 60.067 52.381 14.14 0.00 0.00 3.10
2299 2540 2.600731 CTGAGTTAACTGCCGTCTCTG 58.399 52.381 14.14 0.00 0.00 3.35
2300 2541 1.272490 TGAGTTAACTGCCGTCTCTGG 59.728 52.381 14.14 0.00 0.00 3.86
2308 2549 2.898738 CCGTCTCTGGCTGCATCT 59.101 61.111 0.50 0.00 0.00 2.90
2309 2550 1.227205 CCGTCTCTGGCTGCATCTC 60.227 63.158 0.50 0.00 0.00 2.75
2310 2551 1.227205 CGTCTCTGGCTGCATCTCC 60.227 63.158 0.50 0.00 0.00 3.71
2311 2552 1.674764 CGTCTCTGGCTGCATCTCCT 61.675 60.000 0.50 0.00 0.00 3.69
2312 2553 0.179078 GTCTCTGGCTGCATCTCCTG 60.179 60.000 0.50 0.00 0.00 3.86
2313 2554 0.325016 TCTCTGGCTGCATCTCCTGA 60.325 55.000 0.50 0.00 0.00 3.86
2314 2555 0.105224 CTCTGGCTGCATCTCCTGAG 59.895 60.000 16.45 16.45 40.42 3.35
2315 2556 1.524165 CTGGCTGCATCTCCTGAGC 60.524 63.158 0.50 0.00 0.00 4.26
2316 2557 2.203181 GGCTGCATCTCCTGAGCC 60.203 66.667 0.50 0.00 39.41 4.70
2317 2558 2.203181 GCTGCATCTCCTGAGCCC 60.203 66.667 0.00 0.00 0.00 5.19
2318 2559 2.509916 CTGCATCTCCTGAGCCCC 59.490 66.667 0.00 0.00 0.00 5.80
2319 2560 3.457625 CTGCATCTCCTGAGCCCCG 62.458 68.421 0.00 0.00 0.00 5.73
2320 2561 4.925861 GCATCTCCTGAGCCCCGC 62.926 72.222 0.00 0.00 0.00 6.13
2321 2562 4.247380 CATCTCCTGAGCCCCGCC 62.247 72.222 0.00 0.00 0.00 6.13
2341 2582 4.675029 CCCGACCACGTCCACCAC 62.675 72.222 0.00 0.00 37.88 4.16
2350 2591 4.736896 GTCCACCACGGCGACTCC 62.737 72.222 16.62 0.00 33.14 3.85
2361 2602 4.436998 CGACTCCACGCCTCCCAC 62.437 72.222 0.00 0.00 0.00 4.61
2362 2603 4.436998 GACTCCACGCCTCCCACG 62.437 72.222 0.00 0.00 0.00 4.94
2393 2634 2.959275 CGCCACCGTAGATCTCAAC 58.041 57.895 0.00 0.00 0.00 3.18
2394 2635 0.866061 CGCCACCGTAGATCTCAACG 60.866 60.000 10.48 10.48 38.80 4.10
2395 2636 1.146358 GCCACCGTAGATCTCAACGC 61.146 60.000 11.74 0.00 37.78 4.84
2396 2637 0.527817 CCACCGTAGATCTCAACGCC 60.528 60.000 11.74 0.00 37.78 5.68
2397 2638 0.527817 CACCGTAGATCTCAACGCCC 60.528 60.000 11.74 0.00 37.78 6.13
2398 2639 1.067582 CCGTAGATCTCAACGCCCC 59.932 63.158 11.74 0.00 37.78 5.80
2399 2640 1.067582 CGTAGATCTCAACGCCCCC 59.932 63.158 0.00 0.00 31.66 5.40
2400 2641 1.672854 CGTAGATCTCAACGCCCCCA 61.673 60.000 0.00 0.00 31.66 4.96
2401 2642 0.179081 GTAGATCTCAACGCCCCCAC 60.179 60.000 0.00 0.00 0.00 4.61
2402 2643 1.335132 TAGATCTCAACGCCCCCACC 61.335 60.000 0.00 0.00 0.00 4.61
2403 2644 2.610859 ATCTCAACGCCCCCACCT 60.611 61.111 0.00 0.00 0.00 4.00
2404 2645 2.595009 GATCTCAACGCCCCCACCTC 62.595 65.000 0.00 0.00 0.00 3.85
2405 2646 4.760047 CTCAACGCCCCCACCTCG 62.760 72.222 0.00 0.00 0.00 4.63
2430 2671 4.180946 CCTCCACGCCGACGAGAG 62.181 72.222 0.00 3.39 43.93 3.20
2431 2672 4.838486 CTCCACGCCGACGAGAGC 62.838 72.222 0.00 0.00 43.93 4.09
2437 2678 4.838486 GCCGACGAGAGCCACGAG 62.838 72.222 0.00 0.00 34.70 4.18
2438 2679 4.838486 CCGACGAGAGCCACGAGC 62.838 72.222 0.00 0.00 44.25 5.03
2467 2708 3.732849 CTGCACCCCCTTCCCCTC 61.733 72.222 0.00 0.00 0.00 4.30
2470 2711 2.692741 CACCCCCTTCCCCTCCTC 60.693 72.222 0.00 0.00 0.00 3.71
2471 2712 4.416601 ACCCCCTTCCCCTCCTCG 62.417 72.222 0.00 0.00 0.00 4.63
2473 2714 4.089757 CCCCTTCCCCTCCTCGGA 62.090 72.222 0.00 0.00 33.16 4.55
2474 2715 2.287251 CCCTTCCCCTCCTCGGAT 59.713 66.667 0.00 0.00 33.16 4.18
2475 2716 1.547248 CCCTTCCCCTCCTCGGATA 59.453 63.158 0.00 0.00 33.16 2.59
2476 2717 0.832559 CCCTTCCCCTCCTCGGATAC 60.833 65.000 0.00 0.00 33.16 2.24
2477 2718 0.832559 CCTTCCCCTCCTCGGATACC 60.833 65.000 0.00 0.00 33.16 2.73
2478 2719 0.832559 CTTCCCCTCCTCGGATACCC 60.833 65.000 0.00 0.00 33.16 3.69
2479 2720 2.203803 CCCCTCCTCGGATACCCC 60.204 72.222 0.00 0.00 33.16 4.95
2480 2721 2.203803 CCCTCCTCGGATACCCCC 60.204 72.222 0.00 0.00 33.16 5.40
2481 2722 2.612836 CCTCCTCGGATACCCCCA 59.387 66.667 0.00 0.00 33.16 4.96
2482 2723 1.837499 CCTCCTCGGATACCCCCAC 60.837 68.421 0.00 0.00 33.16 4.61
2483 2724 1.075525 CTCCTCGGATACCCCCACA 60.076 63.158 0.00 0.00 0.00 4.17
2484 2725 0.471971 CTCCTCGGATACCCCCACAT 60.472 60.000 0.00 0.00 0.00 3.21
2485 2726 0.861854 TCCTCGGATACCCCCACATA 59.138 55.000 0.00 0.00 0.00 2.29
2486 2727 1.435563 TCCTCGGATACCCCCACATAT 59.564 52.381 0.00 0.00 0.00 1.78
2487 2728 1.831736 CCTCGGATACCCCCACATATC 59.168 57.143 0.00 0.00 0.00 1.63
2488 2729 1.831736 CTCGGATACCCCCACATATCC 59.168 57.143 0.91 0.91 42.39 2.59
2489 2730 1.435563 TCGGATACCCCCACATATCCT 59.564 52.381 8.30 0.00 43.27 3.24
2490 2731 1.831736 CGGATACCCCCACATATCCTC 59.168 57.143 8.30 0.00 43.27 3.71
2491 2732 1.831736 GGATACCCCCACATATCCTCG 59.168 57.143 3.50 0.00 42.49 4.63
2492 2733 2.559026 GGATACCCCCACATATCCTCGA 60.559 54.545 3.50 0.00 42.49 4.04
2493 2734 2.779429 TACCCCCACATATCCTCGAA 57.221 50.000 0.00 0.00 0.00 3.71
2494 2735 2.118403 ACCCCCACATATCCTCGAAT 57.882 50.000 0.00 0.00 0.00 3.34
2495 2736 1.978580 ACCCCCACATATCCTCGAATC 59.021 52.381 0.00 0.00 0.00 2.52
2496 2737 1.279271 CCCCCACATATCCTCGAATCC 59.721 57.143 0.00 0.00 0.00 3.01
2497 2738 1.977854 CCCCACATATCCTCGAATCCA 59.022 52.381 0.00 0.00 0.00 3.41
2498 2739 2.573462 CCCCACATATCCTCGAATCCAT 59.427 50.000 0.00 0.00 0.00 3.41
2499 2740 3.369892 CCCCACATATCCTCGAATCCATC 60.370 52.174 0.00 0.00 0.00 3.51
2500 2741 3.369892 CCCACATATCCTCGAATCCATCC 60.370 52.174 0.00 0.00 0.00 3.51
2501 2742 3.369892 CCACATATCCTCGAATCCATCCC 60.370 52.174 0.00 0.00 0.00 3.85
2502 2743 3.261643 CACATATCCTCGAATCCATCCCA 59.738 47.826 0.00 0.00 0.00 4.37
2503 2744 3.517100 ACATATCCTCGAATCCATCCCAG 59.483 47.826 0.00 0.00 0.00 4.45
2504 2745 2.405618 ATCCTCGAATCCATCCCAGA 57.594 50.000 0.00 0.00 0.00 3.86
2505 2746 1.709578 TCCTCGAATCCATCCCAGAG 58.290 55.000 0.00 0.00 0.00 3.35
2506 2747 1.217942 TCCTCGAATCCATCCCAGAGA 59.782 52.381 0.00 0.00 0.00 3.10
2507 2748 2.158249 TCCTCGAATCCATCCCAGAGAT 60.158 50.000 0.00 0.00 34.66 2.75
2519 2760 5.983333 ATCCCAGAGATGGTGAAACTAAT 57.017 39.130 0.00 0.00 36.74 1.73
2521 2762 7.639062 ATCCCAGAGATGGTGAAACTAATAT 57.361 36.000 0.00 0.00 36.74 1.28
2522 2763 7.451731 TCCCAGAGATGGTGAAACTAATATT 57.548 36.000 0.00 0.00 36.74 1.28
2523 2764 7.282585 TCCCAGAGATGGTGAAACTAATATTG 58.717 38.462 0.00 0.00 36.74 1.90
2524 2765 6.016777 CCCAGAGATGGTGAAACTAATATTGC 60.017 42.308 0.00 0.00 36.74 3.56
2525 2766 6.016777 CCAGAGATGGTGAAACTAATATTGCC 60.017 42.308 0.00 0.00 36.74 4.52
2526 2767 5.760253 AGAGATGGTGAAACTAATATTGCCG 59.240 40.000 0.00 0.00 36.74 5.69
2527 2768 4.821805 AGATGGTGAAACTAATATTGCCGG 59.178 41.667 0.00 0.00 36.74 6.13
2528 2769 3.958018 TGGTGAAACTAATATTGCCGGT 58.042 40.909 1.90 0.00 36.74 5.28
2529 2770 4.337145 TGGTGAAACTAATATTGCCGGTT 58.663 39.130 1.90 0.00 36.74 4.44
2530 2771 4.396790 TGGTGAAACTAATATTGCCGGTTC 59.603 41.667 1.90 2.15 36.74 3.62
2531 2772 4.201980 GGTGAAACTAATATTGCCGGTTCC 60.202 45.833 1.90 0.00 36.74 3.62
2532 2773 3.623960 TGAAACTAATATTGCCGGTTCCG 59.376 43.478 1.90 4.08 0.00 4.30
2533 2774 1.589803 ACTAATATTGCCGGTTCCGC 58.410 50.000 1.90 2.60 0.00 5.54
2534 2775 1.134340 ACTAATATTGCCGGTTCCGCA 60.134 47.619 1.90 5.15 0.00 5.69
2535 2776 1.531149 CTAATATTGCCGGTTCCGCAG 59.469 52.381 1.90 0.00 0.00 5.18
2549 2790 2.136791 CGCAGGGGATACTCATGGT 58.863 57.895 0.00 0.00 42.85 3.55
2550 2791 0.250038 CGCAGGGGATACTCATGGTG 60.250 60.000 0.00 0.00 42.85 4.17
2551 2792 1.131638 GCAGGGGATACTCATGGTGA 58.868 55.000 0.00 0.00 42.85 4.02
2552 2793 1.202698 GCAGGGGATACTCATGGTGAC 60.203 57.143 0.00 0.00 42.85 3.67
2553 2794 1.417890 CAGGGGATACTCATGGTGACC 59.582 57.143 0.00 0.00 42.85 4.02
2554 2795 0.393077 GGGGATACTCATGGTGACCG 59.607 60.000 0.00 0.00 36.63 4.79
2555 2796 0.393077 GGGATACTCATGGTGACCGG 59.607 60.000 0.00 0.00 0.00 5.28
2556 2797 0.393077 GGATACTCATGGTGACCGGG 59.607 60.000 6.32 0.00 0.00 5.73
2557 2798 0.393077 GATACTCATGGTGACCGGGG 59.607 60.000 6.32 0.00 0.00 5.73
2558 2799 1.696097 ATACTCATGGTGACCGGGGC 61.696 60.000 6.32 0.00 0.00 5.80
2559 2800 4.489771 CTCATGGTGACCGGGGCC 62.490 72.222 6.32 5.21 0.00 5.80
2596 2837 4.907034 CGACCAGGATCCGCGACG 62.907 72.222 8.23 8.71 0.00 5.12
2632 2873 4.467084 GGCGCGTCCAGGAATGGA 62.467 66.667 8.43 0.00 35.23 3.41
2633 2874 2.435938 GCGCGTCCAGGAATGGAA 60.436 61.111 8.43 0.00 40.06 3.53
2634 2875 2.464459 GCGCGTCCAGGAATGGAAG 61.464 63.158 8.43 5.93 40.06 3.46
2635 2876 1.218047 CGCGTCCAGGAATGGAAGA 59.782 57.895 13.38 0.00 39.33 2.87
2636 2877 1.084370 CGCGTCCAGGAATGGAAGAC 61.084 60.000 13.38 4.96 39.33 3.01
2637 2878 3.050703 CGTCCAGGAATGGAAGACG 57.949 57.895 4.44 0.00 43.52 4.18
2638 2879 0.460284 CGTCCAGGAATGGAAGACGG 60.460 60.000 4.44 0.00 44.86 4.79
2639 2880 0.744771 GTCCAGGAATGGAAGACGGC 60.745 60.000 0.00 0.00 40.06 5.68
2640 2881 1.198094 TCCAGGAATGGAAGACGGCA 61.198 55.000 0.00 0.00 34.56 5.69
2641 2882 0.745845 CCAGGAATGGAAGACGGCAG 60.746 60.000 0.00 0.00 0.00 4.85
2642 2883 0.250234 CAGGAATGGAAGACGGCAGA 59.750 55.000 0.00 0.00 0.00 4.26
2643 2884 1.134280 CAGGAATGGAAGACGGCAGAT 60.134 52.381 0.00 0.00 0.00 2.90
2644 2885 1.139853 AGGAATGGAAGACGGCAGATC 59.860 52.381 0.00 0.00 0.00 2.75
2645 2886 1.134401 GGAATGGAAGACGGCAGATCA 60.134 52.381 0.00 0.00 0.00 2.92
2646 2887 2.208431 GAATGGAAGACGGCAGATCAG 58.792 52.381 0.00 0.00 0.00 2.90
2647 2888 0.467384 ATGGAAGACGGCAGATCAGG 59.533 55.000 0.00 0.00 0.00 3.86
2648 2889 1.144936 GGAAGACGGCAGATCAGGG 59.855 63.158 0.00 0.00 0.00 4.45
2649 2890 1.522580 GAAGACGGCAGATCAGGGC 60.523 63.158 0.00 0.00 0.00 5.19
2654 2895 2.202987 GGCAGATCAGGGCGACAG 60.203 66.667 0.00 0.00 0.00 3.51
2655 2896 2.725312 GGCAGATCAGGGCGACAGA 61.725 63.158 0.00 0.00 0.00 3.41
2656 2897 1.445095 GCAGATCAGGGCGACAGAT 59.555 57.895 0.00 0.00 0.00 2.90
2657 2898 0.599728 GCAGATCAGGGCGACAGATC 60.600 60.000 13.43 13.43 41.22 2.75
2658 2899 0.033228 CAGATCAGGGCGACAGATCC 59.967 60.000 16.63 2.89 41.60 3.36
2659 2900 1.006805 GATCAGGGCGACAGATCCG 60.007 63.158 10.89 0.00 37.41 4.18
2660 2901 1.739338 GATCAGGGCGACAGATCCGT 61.739 60.000 10.89 0.00 37.41 4.69
2661 2902 2.021068 ATCAGGGCGACAGATCCGTG 62.021 60.000 0.00 0.00 39.02 4.94
2662 2903 4.148825 AGGGCGACAGATCCGTGC 62.149 66.667 0.00 0.00 0.00 5.34
2666 2907 4.829518 CGACAGATCCGTGCGCGA 62.830 66.667 23.45 7.81 41.33 5.87
2667 2908 2.951745 GACAGATCCGTGCGCGAG 60.952 66.667 23.45 11.59 41.33 5.03
2668 2909 4.498520 ACAGATCCGTGCGCGAGG 62.499 66.667 23.45 13.99 41.33 4.63
2669 2910 4.498520 CAGATCCGTGCGCGAGGT 62.499 66.667 23.45 7.50 41.33 3.85
2670 2911 4.194720 AGATCCGTGCGCGAGGTC 62.195 66.667 23.45 16.54 41.33 3.85
2682 2923 4.933064 GAGGTCCGCGGCGATGAG 62.933 72.222 25.92 7.02 0.00 2.90
2685 2926 3.896133 GTCCGCGGCGATGAGGTA 61.896 66.667 25.92 0.00 0.00 3.08
2686 2927 2.910479 TCCGCGGCGATGAGGTAT 60.910 61.111 25.92 0.00 0.00 2.73
2687 2928 2.734723 CCGCGGCGATGAGGTATG 60.735 66.667 25.92 0.00 0.00 2.39
2688 2929 3.406361 CGCGGCGATGAGGTATGC 61.406 66.667 19.16 0.00 0.00 3.14
2689 2930 3.406361 GCGGCGATGAGGTATGCG 61.406 66.667 12.98 0.00 0.00 4.73
2690 2931 2.734723 CGGCGATGAGGTATGCGG 60.735 66.667 0.00 0.00 0.00 5.69
2691 2932 2.734591 GGCGATGAGGTATGCGGA 59.265 61.111 0.00 0.00 0.00 5.54
2692 2933 1.373497 GGCGATGAGGTATGCGGAG 60.373 63.158 0.00 0.00 0.00 4.63
2693 2934 1.660355 GCGATGAGGTATGCGGAGA 59.340 57.895 0.00 0.00 0.00 3.71
2694 2935 0.387878 GCGATGAGGTATGCGGAGAG 60.388 60.000 0.00 0.00 0.00 3.20
2695 2936 0.955178 CGATGAGGTATGCGGAGAGT 59.045 55.000 0.00 0.00 0.00 3.24
2696 2937 1.338337 CGATGAGGTATGCGGAGAGTT 59.662 52.381 0.00 0.00 0.00 3.01
2697 2938 2.223829 CGATGAGGTATGCGGAGAGTTT 60.224 50.000 0.00 0.00 0.00 2.66
2698 2939 2.961526 TGAGGTATGCGGAGAGTTTC 57.038 50.000 0.00 0.00 0.00 2.78
2699 2940 2.457598 TGAGGTATGCGGAGAGTTTCT 58.542 47.619 0.00 0.00 0.00 2.52
2700 2941 3.628008 TGAGGTATGCGGAGAGTTTCTA 58.372 45.455 0.00 0.00 0.00 2.10
2701 2942 3.632604 TGAGGTATGCGGAGAGTTTCTAG 59.367 47.826 0.00 0.00 0.00 2.43
2702 2943 3.884091 GAGGTATGCGGAGAGTTTCTAGA 59.116 47.826 0.00 0.00 0.00 2.43
2703 2944 3.886505 AGGTATGCGGAGAGTTTCTAGAG 59.113 47.826 0.00 0.00 0.00 2.43
2704 2945 3.004944 GGTATGCGGAGAGTTTCTAGAGG 59.995 52.174 0.00 0.00 0.00 3.69
2705 2946 2.509166 TGCGGAGAGTTTCTAGAGGA 57.491 50.000 0.00 0.00 0.00 3.71
2706 2947 2.370349 TGCGGAGAGTTTCTAGAGGAG 58.630 52.381 0.00 0.00 0.00 3.69
2707 2948 2.026169 TGCGGAGAGTTTCTAGAGGAGA 60.026 50.000 0.00 0.00 0.00 3.71
2708 2949 2.616842 GCGGAGAGTTTCTAGAGGAGAG 59.383 54.545 0.00 0.00 34.93 3.20
2709 2950 2.616842 CGGAGAGTTTCTAGAGGAGAGC 59.383 54.545 0.00 0.00 34.93 4.09
2710 2951 2.616842 GGAGAGTTTCTAGAGGAGAGCG 59.383 54.545 0.00 0.00 34.93 5.03
2711 2952 2.616842 GAGAGTTTCTAGAGGAGAGCGG 59.383 54.545 0.00 0.00 34.93 5.52
2712 2953 2.240160 AGAGTTTCTAGAGGAGAGCGGA 59.760 50.000 0.00 0.00 34.93 5.54
2713 2954 3.117663 AGAGTTTCTAGAGGAGAGCGGAT 60.118 47.826 0.00 0.00 34.93 4.18
2714 2955 3.219281 AGTTTCTAGAGGAGAGCGGATC 58.781 50.000 0.00 0.00 34.93 3.36
2715 2956 3.117663 AGTTTCTAGAGGAGAGCGGATCT 60.118 47.826 0.00 0.00 42.61 2.75
2716 2957 2.559698 TCTAGAGGAGAGCGGATCTG 57.440 55.000 0.00 0.00 38.84 2.90
2717 2958 1.073125 TCTAGAGGAGAGCGGATCTGG 59.927 57.143 0.00 0.00 38.84 3.86
2718 2959 1.073125 CTAGAGGAGAGCGGATCTGGA 59.927 57.143 0.00 0.00 38.84 3.86
2719 2960 0.178992 AGAGGAGAGCGGATCTGGAG 60.179 60.000 0.00 0.00 38.84 3.86
2720 2961 1.805428 GAGGAGAGCGGATCTGGAGC 61.805 65.000 0.00 0.00 38.84 4.70
2721 2962 2.130426 GGAGAGCGGATCTGGAGCA 61.130 63.158 0.00 0.00 38.84 4.26
2722 2963 1.363443 GAGAGCGGATCTGGAGCAG 59.637 63.158 0.00 0.00 38.84 4.24
2723 2964 1.076412 AGAGCGGATCTGGAGCAGA 60.076 57.895 3.14 0.00 44.99 4.26
2724 2965 1.108727 AGAGCGGATCTGGAGCAGAG 61.109 60.000 3.14 0.00 44.08 3.35
2725 2966 2.086251 GAGCGGATCTGGAGCAGAGG 62.086 65.000 3.14 0.00 44.08 3.69
2726 2967 2.130426 GCGGATCTGGAGCAGAGGA 61.130 63.158 3.14 0.00 44.08 3.71
2727 2968 1.470996 GCGGATCTGGAGCAGAGGAT 61.471 60.000 3.14 0.00 44.08 3.24
2728 2969 1.047002 CGGATCTGGAGCAGAGGATT 58.953 55.000 0.00 0.00 44.08 3.01
2729 2970 1.000731 CGGATCTGGAGCAGAGGATTC 59.999 57.143 0.00 0.00 44.08 2.52
2730 2971 2.328319 GGATCTGGAGCAGAGGATTCT 58.672 52.381 0.00 0.00 44.08 2.40
2731 2972 3.505386 GGATCTGGAGCAGAGGATTCTA 58.495 50.000 0.00 0.00 44.08 2.10
2732 2973 3.511146 GGATCTGGAGCAGAGGATTCTAG 59.489 52.174 0.00 0.00 44.08 2.43
2733 2974 2.315176 TCTGGAGCAGAGGATTCTAGC 58.685 52.381 0.00 0.00 35.39 3.42
2734 2975 1.000385 CTGGAGCAGAGGATTCTAGCG 60.000 57.143 0.00 0.00 34.63 4.26
2735 2976 1.323412 GGAGCAGAGGATTCTAGCGA 58.677 55.000 0.00 0.00 34.63 4.93
2736 2977 1.683917 GGAGCAGAGGATTCTAGCGAA 59.316 52.381 0.00 0.00 34.63 4.70
2737 2978 2.288152 GGAGCAGAGGATTCTAGCGAAG 60.288 54.545 0.00 0.00 34.63 3.79
2738 2979 1.686052 AGCAGAGGATTCTAGCGAAGG 59.314 52.381 0.00 0.00 34.63 3.46
2739 2980 1.410882 GCAGAGGATTCTAGCGAAGGT 59.589 52.381 0.00 0.00 44.89 3.50
2740 2981 2.801342 GCAGAGGATTCTAGCGAAGGTG 60.801 54.545 0.00 0.00 40.22 4.00
2741 2982 2.690497 CAGAGGATTCTAGCGAAGGTGA 59.310 50.000 0.00 0.00 40.22 4.02
2742 2983 3.320541 CAGAGGATTCTAGCGAAGGTGAT 59.679 47.826 0.00 0.00 40.22 3.06
2743 2984 3.572255 AGAGGATTCTAGCGAAGGTGATC 59.428 47.826 0.00 0.00 40.22 2.92
2744 2985 3.571590 AGGATTCTAGCGAAGGTGATCT 58.428 45.455 0.00 0.00 40.22 2.75
2745 2986 4.730966 AGGATTCTAGCGAAGGTGATCTA 58.269 43.478 0.00 0.00 40.22 1.98
2746 2987 4.521256 AGGATTCTAGCGAAGGTGATCTAC 59.479 45.833 0.00 0.00 40.22 2.59
2747 2988 3.965292 TTCTAGCGAAGGTGATCTACG 57.035 47.619 0.00 0.00 40.22 3.51
2748 2989 3.189618 TCTAGCGAAGGTGATCTACGA 57.810 47.619 0.00 0.00 40.22 3.43
2749 2990 2.871022 TCTAGCGAAGGTGATCTACGAC 59.129 50.000 0.00 0.00 40.22 4.34
2750 2991 0.377554 AGCGAAGGTGATCTACGACG 59.622 55.000 0.00 0.00 36.17 5.12
2751 2992 0.376152 GCGAAGGTGATCTACGACGA 59.624 55.000 0.00 0.00 0.00 4.20
2752 2993 1.595003 GCGAAGGTGATCTACGACGAG 60.595 57.143 0.00 0.00 0.00 4.18
2753 2994 1.003759 CGAAGGTGATCTACGACGAGG 60.004 57.143 0.00 0.00 0.00 4.63
2754 2995 0.739561 AAGGTGATCTACGACGAGGC 59.260 55.000 0.00 0.00 0.00 4.70
2755 2996 1.102222 AGGTGATCTACGACGAGGCC 61.102 60.000 0.00 0.00 0.00 5.19
2756 2997 1.381928 GGTGATCTACGACGAGGCCA 61.382 60.000 5.01 0.00 0.00 5.36
2757 2998 0.248539 GTGATCTACGACGAGGCCAC 60.249 60.000 5.01 0.00 0.00 5.01
2758 2999 0.678684 TGATCTACGACGAGGCCACA 60.679 55.000 5.01 0.00 0.00 4.17
2759 3000 0.454600 GATCTACGACGAGGCCACAA 59.545 55.000 5.01 0.00 0.00 3.33
2760 3001 1.067212 GATCTACGACGAGGCCACAAT 59.933 52.381 5.01 0.00 0.00 2.71
2761 3002 0.172578 TCTACGACGAGGCCACAATG 59.827 55.000 5.01 0.00 0.00 2.82
2762 3003 0.806102 CTACGACGAGGCCACAATGG 60.806 60.000 5.01 0.00 41.55 3.16
2763 3004 1.252215 TACGACGAGGCCACAATGGA 61.252 55.000 5.01 0.00 40.96 3.41
2764 3005 1.811266 CGACGAGGCCACAATGGAG 60.811 63.158 5.01 0.00 40.96 3.86
2765 3006 1.450312 GACGAGGCCACAATGGAGG 60.450 63.158 5.01 0.00 40.96 4.30
2766 3007 1.899437 GACGAGGCCACAATGGAGGA 61.899 60.000 5.01 0.00 40.96 3.71
2767 3008 1.299648 CGAGGCCACAATGGAGGAA 59.700 57.895 5.01 0.00 40.96 3.36
2768 3009 0.322456 CGAGGCCACAATGGAGGAAA 60.322 55.000 5.01 0.00 40.96 3.13
2769 3010 1.467920 GAGGCCACAATGGAGGAAAG 58.532 55.000 5.01 0.00 40.96 2.62
2770 3011 0.040204 AGGCCACAATGGAGGAAAGG 59.960 55.000 5.01 0.00 40.96 3.11
2771 3012 0.972471 GGCCACAATGGAGGAAAGGG 60.972 60.000 0.00 0.00 40.96 3.95
2772 3013 1.607801 GCCACAATGGAGGAAAGGGC 61.608 60.000 0.00 0.00 40.96 5.19
2773 3014 0.251742 CCACAATGGAGGAAAGGGCA 60.252 55.000 0.00 0.00 40.96 5.36
2774 3015 1.631405 CACAATGGAGGAAAGGGCAA 58.369 50.000 0.00 0.00 0.00 4.52
2775 3016 1.547372 CACAATGGAGGAAAGGGCAAG 59.453 52.381 0.00 0.00 0.00 4.01
2776 3017 1.188863 CAATGGAGGAAAGGGCAAGG 58.811 55.000 0.00 0.00 0.00 3.61
2777 3018 1.084018 AATGGAGGAAAGGGCAAGGA 58.916 50.000 0.00 0.00 0.00 3.36
2778 3019 1.312884 ATGGAGGAAAGGGCAAGGAT 58.687 50.000 0.00 0.00 0.00 3.24
2779 3020 0.332632 TGGAGGAAAGGGCAAGGATG 59.667 55.000 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 1.002142 GTCCCAACCAAACGCAACTAC 60.002 52.381 0.00 0.00 0.00 2.73
27 28 1.358152 CTAAGGTCCAGTCCCAACCA 58.642 55.000 0.00 0.00 35.43 3.67
29 30 1.652947 TCCTAAGGTCCAGTCCCAAC 58.347 55.000 0.00 0.00 0.00 3.77
31 32 2.196595 CAATCCTAAGGTCCAGTCCCA 58.803 52.381 0.00 0.00 0.00 4.37
32 33 2.092914 CACAATCCTAAGGTCCAGTCCC 60.093 54.545 0.00 0.00 0.00 4.46
42 43 2.237143 TGCCTGACCTCACAATCCTAAG 59.763 50.000 0.00 0.00 0.00 2.18
74 75 0.106419 GACAAAGTGGTGACCCCCAA 60.106 55.000 0.00 0.00 35.92 4.12
106 109 3.676598 TGACCCGTCATTGGTACAATACG 60.677 47.826 0.00 12.58 38.02 3.06
122 125 2.159627 GTCAATTGCACTAGTTGACCCG 59.840 50.000 16.60 0.00 45.25 5.28
128 131 2.494059 AGCGTGTCAATTGCACTAGTT 58.506 42.857 22.12 9.72 34.91 2.24
142 145 3.552273 CCATACCTTTATCGCTAGCGTGT 60.552 47.826 34.10 25.49 40.74 4.49
165 168 3.275999 CCAAAATAGGGTTCACCGGTAG 58.724 50.000 6.87 1.53 46.96 3.18
172 175 0.406361 ACGGGCCAAAATAGGGTTCA 59.594 50.000 4.39 0.00 0.00 3.18
177 180 1.408702 CCATCAACGGGCCAAAATAGG 59.591 52.381 4.39 0.00 0.00 2.57
185 189 0.894835 AAATTCACCATCAACGGGCC 59.105 50.000 0.00 0.00 0.00 5.80
325 342 7.214381 AGTAAAGTTTGGCCAAATTTTCCTAC 58.786 34.615 39.20 32.63 39.69 3.18
405 422 3.368323 GCGGTGGTGAATGGAAATGAATT 60.368 43.478 0.00 0.00 0.00 2.17
415 432 1.002134 AGGAAGGCGGTGGTGAATG 60.002 57.895 0.00 0.00 0.00 2.67
493 510 9.784680 GATTATTCAATACATCGTACTATCGGT 57.215 33.333 0.00 0.00 0.00 4.69
695 720 2.751259 GCATCATCACACCACAGATTGT 59.249 45.455 0.00 0.00 0.00 2.71
696 721 2.750712 TGCATCATCACACCACAGATTG 59.249 45.455 0.00 0.00 0.00 2.67
697 722 3.076079 TGCATCATCACACCACAGATT 57.924 42.857 0.00 0.00 0.00 2.40
750 775 3.915437 AACTTTGGCGTCCATTTACAG 57.085 42.857 0.00 0.00 31.53 2.74
944 970 0.243636 GTTGTTGATTTGGGCGAGGG 59.756 55.000 0.00 0.00 0.00 4.30
959 985 4.464947 CAAGAGAAGGGAAGGAAAGTTGT 58.535 43.478 0.00 0.00 0.00 3.32
977 1003 0.107214 CGGCAAGGGATAAGGCAAGA 60.107 55.000 0.00 0.00 0.00 3.02
1194 1221 4.096003 AACCGGGTGAGGATGGCG 62.096 66.667 6.32 0.00 34.73 5.69
1758 1788 1.549950 GGAGGGAAATGGCTCAAACCA 60.550 52.381 0.00 0.00 45.82 3.67
1791 1821 2.249139 CCACCATCCTAGGTAGGTAGC 58.751 57.143 21.99 0.00 44.02 3.58
1795 1825 2.471815 TCACCACCATCCTAGGTAGG 57.528 55.000 17.28 17.28 40.77 3.18
1889 1924 6.516739 TGATCAATACGGCAATACCAAAAA 57.483 33.333 0.00 0.00 39.03 1.94
1909 1944 1.693034 TGCCCCTGTGCATCTTGAT 59.307 52.632 0.00 0.00 36.04 2.57
2060 2095 0.825425 TTCAATGGCTCACCCGCAAA 60.825 50.000 0.00 0.00 35.87 3.68
2061 2096 0.825425 TTTCAATGGCTCACCCGCAA 60.825 50.000 0.00 0.00 35.87 4.85
2062 2097 0.611618 ATTTCAATGGCTCACCCGCA 60.612 50.000 0.00 0.00 35.87 5.69
2063 2098 0.532115 AATTTCAATGGCTCACCCGC 59.468 50.000 0.00 0.00 35.87 6.13
2064 2099 1.545582 ACAATTTCAATGGCTCACCCG 59.454 47.619 0.00 0.00 35.87 5.28
2065 2100 3.683365 AACAATTTCAATGGCTCACCC 57.317 42.857 0.00 0.00 33.59 4.61
2066 2101 6.397272 TGAATAACAATTTCAATGGCTCACC 58.603 36.000 0.00 0.00 30.44 4.02
2067 2102 7.315142 TCTGAATAACAATTTCAATGGCTCAC 58.685 34.615 0.00 0.00 32.98 3.51
2068 2103 7.465353 TCTGAATAACAATTTCAATGGCTCA 57.535 32.000 0.00 0.00 32.98 4.26
2069 2104 8.192774 TCATCTGAATAACAATTTCAATGGCTC 58.807 33.333 0.00 0.00 32.98 4.70
2070 2105 8.070034 TCATCTGAATAACAATTTCAATGGCT 57.930 30.769 0.00 0.00 32.98 4.75
2071 2106 8.882415 ATCATCTGAATAACAATTTCAATGGC 57.118 30.769 0.00 0.00 32.98 4.40
2078 2113 9.690913 TGGAAGAGATCATCTGAATAACAATTT 57.309 29.630 0.00 0.00 38.67 1.82
2079 2114 9.863650 ATGGAAGAGATCATCTGAATAACAATT 57.136 29.630 0.00 0.00 38.67 2.32
2081 2116 9.993454 CTATGGAAGAGATCATCTGAATAACAA 57.007 33.333 0.00 0.00 38.67 2.83
2082 2117 8.591940 CCTATGGAAGAGATCATCTGAATAACA 58.408 37.037 0.00 0.00 38.67 2.41
2083 2118 7.548780 GCCTATGGAAGAGATCATCTGAATAAC 59.451 40.741 0.00 0.00 38.67 1.89
2084 2119 7.457218 AGCCTATGGAAGAGATCATCTGAATAA 59.543 37.037 0.00 0.00 38.67 1.40
2085 2120 6.958778 AGCCTATGGAAGAGATCATCTGAATA 59.041 38.462 0.00 0.00 38.67 1.75
2086 2121 5.786457 AGCCTATGGAAGAGATCATCTGAAT 59.214 40.000 0.00 0.00 38.67 2.57
2087 2122 5.153675 AGCCTATGGAAGAGATCATCTGAA 58.846 41.667 0.00 0.00 38.67 3.02
2088 2123 4.749820 AGCCTATGGAAGAGATCATCTGA 58.250 43.478 0.00 0.00 38.67 3.27
2111 2146 7.121974 ACTGAACAACATAGATCAAACGAAG 57.878 36.000 0.00 0.00 0.00 3.79
2112 2147 7.351981 CAACTGAACAACATAGATCAAACGAA 58.648 34.615 0.00 0.00 0.00 3.85
2113 2148 6.073276 CCAACTGAACAACATAGATCAAACGA 60.073 38.462 0.00 0.00 0.00 3.85
2114 2149 6.079763 CCAACTGAACAACATAGATCAAACG 58.920 40.000 0.00 0.00 0.00 3.60
2115 2150 6.970484 ACCAACTGAACAACATAGATCAAAC 58.030 36.000 0.00 0.00 0.00 2.93
2116 2151 6.073276 CGACCAACTGAACAACATAGATCAAA 60.073 38.462 0.00 0.00 0.00 2.69
2117 2152 5.408299 CGACCAACTGAACAACATAGATCAA 59.592 40.000 0.00 0.00 0.00 2.57
2118 2153 4.929211 CGACCAACTGAACAACATAGATCA 59.071 41.667 0.00 0.00 0.00 2.92
2119 2154 4.929808 ACGACCAACTGAACAACATAGATC 59.070 41.667 0.00 0.00 0.00 2.75
2120 2155 4.894784 ACGACCAACTGAACAACATAGAT 58.105 39.130 0.00 0.00 0.00 1.98
2121 2156 4.330944 ACGACCAACTGAACAACATAGA 57.669 40.909 0.00 0.00 0.00 1.98
2122 2157 6.533819 TTTACGACCAACTGAACAACATAG 57.466 37.500 0.00 0.00 0.00 2.23
2123 2158 6.128769 CGATTTACGACCAACTGAACAACATA 60.129 38.462 0.00 0.00 45.77 2.29
2124 2159 5.333798 CGATTTACGACCAACTGAACAACAT 60.334 40.000 0.00 0.00 45.77 2.71
2227 2468 9.667107 ACACACAAACTATGCAAGTATATAACT 57.333 29.630 0.00 0.00 37.50 2.24
2228 2469 9.702726 CACACACAAACTATGCAAGTATATAAC 57.297 33.333 0.00 0.00 37.50 1.89
2281 2522 1.997669 CCAGAGACGGCAGTTAACTC 58.002 55.000 4.77 0.93 0.00 3.01
2291 2532 1.227205 GAGATGCAGCCAGAGACGG 60.227 63.158 0.00 0.00 0.00 4.79
2292 2533 1.227205 GGAGATGCAGCCAGAGACG 60.227 63.158 0.00 0.00 0.00 4.18
2293 2534 0.179078 CAGGAGATGCAGCCAGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
2294 2535 0.325016 TCAGGAGATGCAGCCAGAGA 60.325 55.000 0.00 0.00 0.00 3.10
2295 2536 0.105224 CTCAGGAGATGCAGCCAGAG 59.895 60.000 0.00 4.73 32.57 3.35
2296 2537 1.969200 GCTCAGGAGATGCAGCCAGA 61.969 60.000 0.00 0.00 0.00 3.86
2297 2538 1.524165 GCTCAGGAGATGCAGCCAG 60.524 63.158 0.00 0.00 0.00 4.85
2298 2539 2.588439 GCTCAGGAGATGCAGCCA 59.412 61.111 0.00 0.00 0.00 4.75
2299 2540 2.203181 GGCTCAGGAGATGCAGCC 60.203 66.667 0.00 0.00 41.69 4.85
2300 2541 2.203181 GGGCTCAGGAGATGCAGC 60.203 66.667 0.00 0.00 33.73 5.25
2301 2542 2.509916 GGGGCTCAGGAGATGCAG 59.490 66.667 0.00 0.00 0.00 4.41
2302 2543 3.473647 CGGGGCTCAGGAGATGCA 61.474 66.667 0.00 0.00 0.00 3.96
2303 2544 4.925861 GCGGGGCTCAGGAGATGC 62.926 72.222 0.00 0.00 0.00 3.91
2304 2545 4.247380 GGCGGGGCTCAGGAGATG 62.247 72.222 0.00 0.00 0.00 2.90
2324 2565 4.675029 GTGGTGGACGTGGTCGGG 62.675 72.222 0.00 0.00 41.85 5.14
2333 2574 4.736896 GGAGTCGCCGTGGTGGAC 62.737 72.222 0.00 2.20 42.00 4.02
2344 2585 4.436998 GTGGGAGGCGTGGAGTCG 62.437 72.222 0.00 0.00 0.00 4.18
2345 2586 4.436998 CGTGGGAGGCGTGGAGTC 62.437 72.222 0.00 0.00 0.00 3.36
2370 2611 4.203076 ATCTACGGTGGCGTCGGC 62.203 66.667 12.58 12.58 38.90 5.54
2371 2612 2.025727 GATCTACGGTGGCGTCGG 59.974 66.667 0.00 0.00 0.00 4.79
2372 2613 1.009900 GAGATCTACGGTGGCGTCG 60.010 63.158 0.00 0.00 0.00 5.12
2373 2614 0.454600 TTGAGATCTACGGTGGCGTC 59.545 55.000 0.00 0.00 0.00 5.19
2374 2615 0.172803 GTTGAGATCTACGGTGGCGT 59.827 55.000 0.00 0.00 0.00 5.68
2375 2616 0.866061 CGTTGAGATCTACGGTGGCG 60.866 60.000 9.71 0.00 40.41 5.69
2376 2617 1.146358 GCGTTGAGATCTACGGTGGC 61.146 60.000 17.39 4.16 43.33 5.01
2377 2618 0.527817 GGCGTTGAGATCTACGGTGG 60.528 60.000 17.39 0.00 43.33 4.61
2378 2619 0.527817 GGGCGTTGAGATCTACGGTG 60.528 60.000 17.39 0.00 43.33 4.94
2379 2620 1.673808 GGGGCGTTGAGATCTACGGT 61.674 60.000 17.39 0.00 43.33 4.83
2380 2621 1.067582 GGGGCGTTGAGATCTACGG 59.932 63.158 17.39 2.68 43.33 4.02
2381 2622 1.067582 GGGGGCGTTGAGATCTACG 59.932 63.158 12.68 12.68 45.25 3.51
2382 2623 0.179081 GTGGGGGCGTTGAGATCTAC 60.179 60.000 0.00 0.00 0.00 2.59
2383 2624 1.335132 GGTGGGGGCGTTGAGATCTA 61.335 60.000 0.00 0.00 0.00 1.98
2384 2625 2.670148 GGTGGGGGCGTTGAGATCT 61.670 63.158 0.00 0.00 0.00 2.75
2385 2626 2.124695 GGTGGGGGCGTTGAGATC 60.125 66.667 0.00 0.00 0.00 2.75
2386 2627 2.610859 AGGTGGGGGCGTTGAGAT 60.611 61.111 0.00 0.00 0.00 2.75
2387 2628 3.319198 GAGGTGGGGGCGTTGAGA 61.319 66.667 0.00 0.00 0.00 3.27
2388 2629 4.760047 CGAGGTGGGGGCGTTGAG 62.760 72.222 0.00 0.00 0.00 3.02
2413 2654 4.180946 CTCTCGTCGGCGTGGAGG 62.181 72.222 22.51 13.47 39.49 4.30
2414 2655 4.838486 GCTCTCGTCGGCGTGGAG 62.838 72.222 22.86 22.86 39.66 3.86
2420 2661 4.838486 CTCGTGGCTCTCGTCGGC 62.838 72.222 0.00 0.00 0.00 5.54
2421 2662 4.838486 GCTCGTGGCTCTCGTCGG 62.838 72.222 0.00 0.00 38.06 4.79
2423 2664 4.838486 CCGCTCGTGGCTCTCGTC 62.838 72.222 2.32 0.00 39.13 4.20
2450 2691 3.732849 GAGGGGAAGGGGGTGCAG 61.733 72.222 0.00 0.00 0.00 4.41
2453 2694 2.692741 GAGGAGGGGAAGGGGGTG 60.693 72.222 0.00 0.00 0.00 4.61
2454 2695 4.416601 CGAGGAGGGGAAGGGGGT 62.417 72.222 0.00 0.00 0.00 4.95
2456 2697 2.032356 TATCCGAGGAGGGGAAGGGG 62.032 65.000 0.00 0.00 41.52 4.79
2457 2698 0.832559 GTATCCGAGGAGGGGAAGGG 60.833 65.000 0.00 0.00 41.52 3.95
2458 2699 0.832559 GGTATCCGAGGAGGGGAAGG 60.833 65.000 0.00 0.00 41.52 3.46
2459 2700 0.832559 GGGTATCCGAGGAGGGGAAG 60.833 65.000 0.00 0.00 41.52 3.46
2460 2701 1.235112 GGGTATCCGAGGAGGGGAA 59.765 63.158 0.00 0.00 41.52 3.97
2461 2702 2.786899 GGGGTATCCGAGGAGGGGA 61.787 68.421 0.00 0.00 41.52 4.81
2462 2703 2.203803 GGGGTATCCGAGGAGGGG 60.204 72.222 0.00 0.00 41.52 4.79
2463 2704 2.203803 GGGGGTATCCGAGGAGGG 60.204 72.222 0.00 0.00 41.52 4.30
2464 2705 1.837499 GTGGGGGTATCCGAGGAGG 60.837 68.421 0.00 0.00 42.97 4.30
2465 2706 0.471971 ATGTGGGGGTATCCGAGGAG 60.472 60.000 0.00 0.00 36.01 3.69
2466 2707 0.861854 TATGTGGGGGTATCCGAGGA 59.138 55.000 0.00 0.00 36.01 3.71
2467 2708 1.831736 GATATGTGGGGGTATCCGAGG 59.168 57.143 0.00 0.00 36.01 4.63
2468 2709 1.831736 GGATATGTGGGGGTATCCGAG 59.168 57.143 0.00 0.00 37.63 4.63
2469 2710 1.946984 GGATATGTGGGGGTATCCGA 58.053 55.000 0.00 0.00 37.63 4.55
2471 2712 1.831736 CGAGGATATGTGGGGGTATCC 59.168 57.143 3.75 3.75 44.35 2.59
2472 2713 2.816411 TCGAGGATATGTGGGGGTATC 58.184 52.381 0.00 0.00 0.00 2.24
2473 2714 3.269592 TTCGAGGATATGTGGGGGTAT 57.730 47.619 0.00 0.00 0.00 2.73
2474 2715 2.779429 TTCGAGGATATGTGGGGGTA 57.221 50.000 0.00 0.00 0.00 3.69
2475 2716 1.978580 GATTCGAGGATATGTGGGGGT 59.021 52.381 0.00 0.00 0.00 4.95
2476 2717 1.279271 GGATTCGAGGATATGTGGGGG 59.721 57.143 0.00 0.00 0.00 5.40
2477 2718 1.977854 TGGATTCGAGGATATGTGGGG 59.022 52.381 0.00 0.00 0.00 4.96
2478 2719 3.369892 GGATGGATTCGAGGATATGTGGG 60.370 52.174 0.00 0.00 0.00 4.61
2479 2720 3.369892 GGGATGGATTCGAGGATATGTGG 60.370 52.174 0.00 0.00 0.00 4.17
2480 2721 3.261643 TGGGATGGATTCGAGGATATGTG 59.738 47.826 0.00 0.00 0.00 3.21
2481 2722 3.517100 CTGGGATGGATTCGAGGATATGT 59.483 47.826 0.00 0.00 0.00 2.29
2482 2723 3.771479 TCTGGGATGGATTCGAGGATATG 59.229 47.826 0.00 0.00 0.00 1.78
2483 2724 4.029520 CTCTGGGATGGATTCGAGGATAT 58.970 47.826 0.00 0.00 0.00 1.63
2484 2725 3.076032 TCTCTGGGATGGATTCGAGGATA 59.924 47.826 0.00 0.00 0.00 2.59
2485 2726 2.158249 TCTCTGGGATGGATTCGAGGAT 60.158 50.000 0.00 0.00 0.00 3.24
2486 2727 1.217942 TCTCTGGGATGGATTCGAGGA 59.782 52.381 0.00 0.00 0.00 3.71
2487 2728 1.709578 TCTCTGGGATGGATTCGAGG 58.290 55.000 0.00 0.00 0.00 4.63
2488 2729 3.316071 CATCTCTGGGATGGATTCGAG 57.684 52.381 9.74 0.00 45.85 4.04
2501 2742 6.293081 CGGCAATATTAGTTTCACCATCTCTG 60.293 42.308 0.00 0.00 0.00 3.35
2502 2743 5.760253 CGGCAATATTAGTTTCACCATCTCT 59.240 40.000 0.00 0.00 0.00 3.10
2503 2744 5.049405 CCGGCAATATTAGTTTCACCATCTC 60.049 44.000 0.00 0.00 0.00 2.75
2504 2745 4.821805 CCGGCAATATTAGTTTCACCATCT 59.178 41.667 0.00 0.00 0.00 2.90
2505 2746 4.578928 ACCGGCAATATTAGTTTCACCATC 59.421 41.667 0.00 0.00 0.00 3.51
2506 2747 4.532834 ACCGGCAATATTAGTTTCACCAT 58.467 39.130 0.00 0.00 0.00 3.55
2507 2748 3.958018 ACCGGCAATATTAGTTTCACCA 58.042 40.909 0.00 0.00 0.00 4.17
2508 2749 4.201980 GGAACCGGCAATATTAGTTTCACC 60.202 45.833 0.00 0.00 0.00 4.02
2509 2750 4.495184 CGGAACCGGCAATATTAGTTTCAC 60.495 45.833 0.00 0.00 35.56 3.18
2510 2751 3.623960 CGGAACCGGCAATATTAGTTTCA 59.376 43.478 0.00 0.00 35.56 2.69
2511 2752 3.547413 GCGGAACCGGCAATATTAGTTTC 60.547 47.826 15.01 0.00 40.19 2.78
2512 2753 2.356695 GCGGAACCGGCAATATTAGTTT 59.643 45.455 15.01 0.00 40.19 2.66
2513 2754 1.944709 GCGGAACCGGCAATATTAGTT 59.055 47.619 15.01 0.00 40.19 2.24
2514 2755 1.134340 TGCGGAACCGGCAATATTAGT 60.134 47.619 15.01 0.00 40.19 2.24
2515 2756 1.531149 CTGCGGAACCGGCAATATTAG 59.469 52.381 15.01 0.00 40.19 1.73
2516 2757 1.588674 CTGCGGAACCGGCAATATTA 58.411 50.000 15.01 0.00 40.19 0.98
2517 2758 1.101049 CCTGCGGAACCGGCAATATT 61.101 55.000 15.01 0.00 40.19 1.28
2518 2759 1.525995 CCTGCGGAACCGGCAATAT 60.526 57.895 15.01 0.00 40.19 1.28
2519 2760 2.124901 CCTGCGGAACCGGCAATA 60.125 61.111 15.01 0.00 40.19 1.90
2524 2765 3.158648 TATCCCCTGCGGAACCGG 61.159 66.667 15.01 0.00 46.47 5.28
2525 2766 2.108362 GTATCCCCTGCGGAACCG 59.892 66.667 9.00 9.00 46.47 4.44
2526 2767 1.335132 TGAGTATCCCCTGCGGAACC 61.335 60.000 0.00 0.00 46.47 3.62
2527 2768 0.759346 ATGAGTATCCCCTGCGGAAC 59.241 55.000 0.00 0.00 46.47 3.62
2528 2769 0.758734 CATGAGTATCCCCTGCGGAA 59.241 55.000 0.00 0.00 46.47 4.30
2530 2771 1.372683 CCATGAGTATCCCCTGCGG 59.627 63.158 0.00 0.00 0.00 5.69
2531 2772 0.250038 CACCATGAGTATCCCCTGCG 60.250 60.000 0.00 0.00 0.00 5.18
2532 2773 1.131638 TCACCATGAGTATCCCCTGC 58.868 55.000 0.00 0.00 0.00 4.85
2533 2774 1.417890 GGTCACCATGAGTATCCCCTG 59.582 57.143 0.00 0.00 0.00 4.45
2534 2775 1.807814 GGTCACCATGAGTATCCCCT 58.192 55.000 0.00 0.00 0.00 4.79
2535 2776 0.393077 CGGTCACCATGAGTATCCCC 59.607 60.000 0.00 0.00 0.00 4.81
2536 2777 0.393077 CCGGTCACCATGAGTATCCC 59.607 60.000 0.00 0.00 0.00 3.85
2537 2778 0.393077 CCCGGTCACCATGAGTATCC 59.607 60.000 0.00 0.00 0.00 2.59
2538 2779 0.393077 CCCCGGTCACCATGAGTATC 59.607 60.000 0.00 0.00 0.00 2.24
2539 2780 1.696097 GCCCCGGTCACCATGAGTAT 61.696 60.000 0.00 0.00 0.00 2.12
2540 2781 2.363975 GCCCCGGTCACCATGAGTA 61.364 63.158 0.00 0.00 0.00 2.59
2541 2782 3.717294 GCCCCGGTCACCATGAGT 61.717 66.667 0.00 0.00 0.00 3.41
2542 2783 4.489771 GGCCCCGGTCACCATGAG 62.490 72.222 0.00 0.00 0.00 2.90
2572 2813 4.593864 GATCCTGGTCGCCCGCTC 62.594 72.222 0.00 0.00 0.00 5.03
2579 2820 4.907034 CGTCGCGGATCCTGGTCG 62.907 72.222 10.75 7.13 0.00 4.79
2615 2856 4.467084 TCCATTCCTGGACGCGCC 62.467 66.667 5.73 9.63 46.95 6.53
2622 2863 0.745845 CTGCCGTCTTCCATTCCTGG 60.746 60.000 0.00 0.00 44.64 4.45
2623 2864 0.250234 TCTGCCGTCTTCCATTCCTG 59.750 55.000 0.00 0.00 0.00 3.86
2624 2865 1.139853 GATCTGCCGTCTTCCATTCCT 59.860 52.381 0.00 0.00 0.00 3.36
2625 2866 1.134401 TGATCTGCCGTCTTCCATTCC 60.134 52.381 0.00 0.00 0.00 3.01
2626 2867 2.208431 CTGATCTGCCGTCTTCCATTC 58.792 52.381 0.00 0.00 0.00 2.67
2627 2868 1.134280 CCTGATCTGCCGTCTTCCATT 60.134 52.381 0.00 0.00 0.00 3.16
2628 2869 0.467384 CCTGATCTGCCGTCTTCCAT 59.533 55.000 0.00 0.00 0.00 3.41
2629 2870 1.617018 CCCTGATCTGCCGTCTTCCA 61.617 60.000 0.00 0.00 0.00 3.53
2630 2871 1.144936 CCCTGATCTGCCGTCTTCC 59.855 63.158 0.00 0.00 0.00 3.46
2631 2872 1.522580 GCCCTGATCTGCCGTCTTC 60.523 63.158 0.00 0.00 0.00 2.87
2632 2873 2.586792 GCCCTGATCTGCCGTCTT 59.413 61.111 0.00 0.00 0.00 3.01
2633 2874 3.842923 CGCCCTGATCTGCCGTCT 61.843 66.667 0.00 0.00 0.00 4.18
2634 2875 3.838271 TCGCCCTGATCTGCCGTC 61.838 66.667 0.00 0.00 0.00 4.79
2635 2876 4.148825 GTCGCCCTGATCTGCCGT 62.149 66.667 0.00 0.00 0.00 5.68
2636 2877 4.147449 TGTCGCCCTGATCTGCCG 62.147 66.667 0.00 0.00 0.00 5.69
2637 2878 2.037620 ATCTGTCGCCCTGATCTGCC 62.038 60.000 0.00 0.00 0.00 4.85
2638 2879 0.599728 GATCTGTCGCCCTGATCTGC 60.600 60.000 11.75 0.00 42.32 4.26
2639 2880 0.033228 GGATCTGTCGCCCTGATCTG 59.967 60.000 15.87 0.00 44.02 2.90
2640 2881 1.459455 CGGATCTGTCGCCCTGATCT 61.459 60.000 15.87 0.00 44.02 2.75
2641 2882 1.006805 CGGATCTGTCGCCCTGATC 60.007 63.158 11.01 11.01 43.91 2.92
2642 2883 1.758514 ACGGATCTGTCGCCCTGAT 60.759 57.895 0.00 0.00 34.73 2.90
2643 2884 2.362503 ACGGATCTGTCGCCCTGA 60.363 61.111 0.00 0.00 0.00 3.86
2644 2885 2.202797 CACGGATCTGTCGCCCTG 60.203 66.667 3.54 0.00 0.00 4.45
2645 2886 4.148825 GCACGGATCTGTCGCCCT 62.149 66.667 3.54 0.00 0.00 5.19
2649 2890 4.829518 TCGCGCACGGATCTGTCG 62.830 66.667 8.75 17.07 40.63 4.35
2650 2891 2.951745 CTCGCGCACGGATCTGTC 60.952 66.667 8.75 0.00 40.63 3.51
2651 2892 4.498520 CCTCGCGCACGGATCTGT 62.499 66.667 8.75 0.00 40.63 3.41
2652 2893 4.498520 ACCTCGCGCACGGATCTG 62.499 66.667 17.80 0.00 40.63 2.90
2653 2894 4.194720 GACCTCGCGCACGGATCT 62.195 66.667 17.80 0.00 40.63 2.75
2665 2906 4.933064 CTCATCGCCGCGGACCTC 62.933 72.222 33.48 10.38 0.00 3.85
2668 2909 3.208884 ATACCTCATCGCCGCGGAC 62.209 63.158 33.48 19.66 0.00 4.79
2669 2910 2.910479 ATACCTCATCGCCGCGGA 60.910 61.111 33.48 9.86 0.00 5.54
2670 2911 2.734723 CATACCTCATCGCCGCGG 60.735 66.667 24.05 24.05 0.00 6.46
2671 2912 3.406361 GCATACCTCATCGCCGCG 61.406 66.667 6.39 6.39 0.00 6.46
2672 2913 3.406361 CGCATACCTCATCGCCGC 61.406 66.667 0.00 0.00 0.00 6.53
2673 2914 2.734723 CCGCATACCTCATCGCCG 60.735 66.667 0.00 0.00 0.00 6.46
2674 2915 1.373497 CTCCGCATACCTCATCGCC 60.373 63.158 0.00 0.00 0.00 5.54
2675 2916 0.387878 CTCTCCGCATACCTCATCGC 60.388 60.000 0.00 0.00 0.00 4.58
2676 2917 0.955178 ACTCTCCGCATACCTCATCG 59.045 55.000 0.00 0.00 0.00 3.84
2677 2918 3.068873 AGAAACTCTCCGCATACCTCATC 59.931 47.826 0.00 0.00 0.00 2.92
2678 2919 3.034635 AGAAACTCTCCGCATACCTCAT 58.965 45.455 0.00 0.00 0.00 2.90
2679 2920 2.457598 AGAAACTCTCCGCATACCTCA 58.542 47.619 0.00 0.00 0.00 3.86
2680 2921 3.884091 TCTAGAAACTCTCCGCATACCTC 59.116 47.826 0.00 0.00 0.00 3.85
2681 2922 3.886505 CTCTAGAAACTCTCCGCATACCT 59.113 47.826 0.00 0.00 0.00 3.08
2682 2923 3.004944 CCTCTAGAAACTCTCCGCATACC 59.995 52.174 0.00 0.00 0.00 2.73
2683 2924 3.884091 TCCTCTAGAAACTCTCCGCATAC 59.116 47.826 0.00 0.00 0.00 2.39
2684 2925 4.138290 CTCCTCTAGAAACTCTCCGCATA 58.862 47.826 0.00 0.00 0.00 3.14
2685 2926 2.955660 CTCCTCTAGAAACTCTCCGCAT 59.044 50.000 0.00 0.00 0.00 4.73
2686 2927 2.026169 TCTCCTCTAGAAACTCTCCGCA 60.026 50.000 0.00 0.00 0.00 5.69
2687 2928 2.616842 CTCTCCTCTAGAAACTCTCCGC 59.383 54.545 0.00 0.00 32.46 5.54
2688 2929 2.616842 GCTCTCCTCTAGAAACTCTCCG 59.383 54.545 0.00 0.00 32.46 4.63
2689 2930 2.616842 CGCTCTCCTCTAGAAACTCTCC 59.383 54.545 0.00 0.00 32.46 3.71
2690 2931 2.616842 CCGCTCTCCTCTAGAAACTCTC 59.383 54.545 0.00 0.00 32.46 3.20
2691 2932 2.240160 TCCGCTCTCCTCTAGAAACTCT 59.760 50.000 0.00 0.00 32.46 3.24
2692 2933 2.645802 TCCGCTCTCCTCTAGAAACTC 58.354 52.381 0.00 0.00 32.46 3.01
2693 2934 2.810870 TCCGCTCTCCTCTAGAAACT 57.189 50.000 0.00 0.00 32.46 2.66
2694 2935 3.004315 CAGATCCGCTCTCCTCTAGAAAC 59.996 52.174 0.00 0.00 32.46 2.78
2695 2936 3.218453 CAGATCCGCTCTCCTCTAGAAA 58.782 50.000 0.00 0.00 32.46 2.52
2696 2937 2.488167 CCAGATCCGCTCTCCTCTAGAA 60.488 54.545 0.00 0.00 32.46 2.10
2697 2938 1.073125 CCAGATCCGCTCTCCTCTAGA 59.927 57.143 0.00 0.00 29.16 2.43
2698 2939 1.073125 TCCAGATCCGCTCTCCTCTAG 59.927 57.143 0.00 0.00 29.16 2.43
2699 2940 1.073125 CTCCAGATCCGCTCTCCTCTA 59.927 57.143 0.00 0.00 29.16 2.43
2700 2941 0.178992 CTCCAGATCCGCTCTCCTCT 60.179 60.000 0.00 0.00 29.16 3.69
2701 2942 1.805428 GCTCCAGATCCGCTCTCCTC 61.805 65.000 0.00 0.00 29.16 3.71
2702 2943 1.832167 GCTCCAGATCCGCTCTCCT 60.832 63.158 0.00 0.00 29.16 3.69
2703 2944 2.086251 CTGCTCCAGATCCGCTCTCC 62.086 65.000 0.00 0.00 32.44 3.71
2704 2945 1.106351 TCTGCTCCAGATCCGCTCTC 61.106 60.000 0.00 0.00 35.39 3.20
2705 2946 1.076412 TCTGCTCCAGATCCGCTCT 60.076 57.895 0.00 0.00 35.39 4.09
2706 2947 1.363443 CTCTGCTCCAGATCCGCTC 59.637 63.158 0.00 0.00 39.92 5.03
2707 2948 2.132996 CCTCTGCTCCAGATCCGCT 61.133 63.158 0.00 0.00 39.92 5.52
2708 2949 1.470996 ATCCTCTGCTCCAGATCCGC 61.471 60.000 0.00 0.00 39.92 5.54
2709 2950 1.000731 GAATCCTCTGCTCCAGATCCG 59.999 57.143 0.00 0.00 39.92 4.18
2710 2951 2.328319 AGAATCCTCTGCTCCAGATCC 58.672 52.381 0.00 0.00 39.92 3.36
2711 2952 3.056607 GCTAGAATCCTCTGCTCCAGATC 60.057 52.174 0.00 0.00 39.92 2.75
2712 2953 2.899256 GCTAGAATCCTCTGCTCCAGAT 59.101 50.000 0.00 0.00 39.92 2.90
2713 2954 2.315176 GCTAGAATCCTCTGCTCCAGA 58.685 52.381 0.00 0.00 38.25 3.86
2714 2955 1.000385 CGCTAGAATCCTCTGCTCCAG 60.000 57.143 0.00 0.00 32.70 3.86
2715 2956 1.035923 CGCTAGAATCCTCTGCTCCA 58.964 55.000 0.00 0.00 32.70 3.86
2716 2957 1.323412 TCGCTAGAATCCTCTGCTCC 58.677 55.000 0.00 0.00 32.70 4.70
2717 2958 2.288152 CCTTCGCTAGAATCCTCTGCTC 60.288 54.545 0.00 0.00 35.56 4.26
2718 2959 1.686052 CCTTCGCTAGAATCCTCTGCT 59.314 52.381 0.00 0.00 35.56 4.24
2719 2960 1.410882 ACCTTCGCTAGAATCCTCTGC 59.589 52.381 0.00 0.00 35.56 4.26
2720 2961 2.690497 TCACCTTCGCTAGAATCCTCTG 59.310 50.000 0.00 0.00 35.56 3.35
2721 2962 3.019799 TCACCTTCGCTAGAATCCTCT 57.980 47.619 0.00 0.00 35.56 3.69
2722 2963 3.572255 AGATCACCTTCGCTAGAATCCTC 59.428 47.826 0.00 0.00 35.56 3.71
2723 2964 3.571590 AGATCACCTTCGCTAGAATCCT 58.428 45.455 0.00 0.00 35.56 3.24
2724 2965 4.614078 CGTAGATCACCTTCGCTAGAATCC 60.614 50.000 0.00 0.00 35.56 3.01
2725 2966 4.213694 TCGTAGATCACCTTCGCTAGAATC 59.786 45.833 0.00 0.00 35.92 2.52
2726 2967 4.023878 GTCGTAGATCACCTTCGCTAGAAT 60.024 45.833 0.00 0.00 40.67 2.40
2727 2968 3.311871 GTCGTAGATCACCTTCGCTAGAA 59.688 47.826 0.00 0.00 40.67 2.10
2728 2969 2.871022 GTCGTAGATCACCTTCGCTAGA 59.129 50.000 0.00 0.00 40.67 2.43
2729 2970 2.348685 CGTCGTAGATCACCTTCGCTAG 60.349 54.545 0.00 0.00 40.67 3.42
2730 2971 1.596260 CGTCGTAGATCACCTTCGCTA 59.404 52.381 0.00 0.00 40.67 4.26
2731 2972 0.377554 CGTCGTAGATCACCTTCGCT 59.622 55.000 0.00 0.00 40.67 4.93
2732 2973 0.376152 TCGTCGTAGATCACCTTCGC 59.624 55.000 0.00 0.00 40.67 4.70
2733 2974 1.003759 CCTCGTCGTAGATCACCTTCG 60.004 57.143 0.00 0.00 40.67 3.79
2734 2975 1.268640 GCCTCGTCGTAGATCACCTTC 60.269 57.143 0.00 0.00 40.67 3.46
2735 2976 0.739561 GCCTCGTCGTAGATCACCTT 59.260 55.000 0.00 0.00 40.67 3.50
2736 2977 1.102222 GGCCTCGTCGTAGATCACCT 61.102 60.000 0.00 0.00 40.67 4.00
2737 2978 1.359475 GGCCTCGTCGTAGATCACC 59.641 63.158 0.00 0.00 40.67 4.02
2738 2979 0.248539 GTGGCCTCGTCGTAGATCAC 60.249 60.000 3.32 0.00 40.67 3.06
2739 2980 0.678684 TGTGGCCTCGTCGTAGATCA 60.679 55.000 3.32 0.00 40.67 2.92
2740 2981 0.454600 TTGTGGCCTCGTCGTAGATC 59.545 55.000 3.32 0.00 40.67 2.75
2741 2982 1.112113 ATTGTGGCCTCGTCGTAGAT 58.888 50.000 3.32 0.00 40.67 1.98
2742 2983 0.172578 CATTGTGGCCTCGTCGTAGA 59.827 55.000 3.32 0.00 0.00 2.59
2743 2984 0.806102 CCATTGTGGCCTCGTCGTAG 60.806 60.000 3.32 0.00 0.00 3.51
2744 2985 1.216977 CCATTGTGGCCTCGTCGTA 59.783 57.895 3.32 0.00 0.00 3.43
2745 2986 2.047274 CCATTGTGGCCTCGTCGT 60.047 61.111 3.32 0.00 0.00 4.34
2746 2987 1.811266 CTCCATTGTGGCCTCGTCG 60.811 63.158 3.32 0.00 37.47 5.12
2747 2988 1.450312 CCTCCATTGTGGCCTCGTC 60.450 63.158 3.32 0.00 37.47 4.20
2748 2989 1.488705 TTCCTCCATTGTGGCCTCGT 61.489 55.000 3.32 0.00 37.47 4.18
2749 2990 0.322456 TTTCCTCCATTGTGGCCTCG 60.322 55.000 3.32 0.00 37.47 4.63
2750 2991 1.467920 CTTTCCTCCATTGTGGCCTC 58.532 55.000 3.32 0.00 37.47 4.70
2751 2992 0.040204 CCTTTCCTCCATTGTGGCCT 59.960 55.000 3.32 0.00 37.47 5.19
2752 2993 0.972471 CCCTTTCCTCCATTGTGGCC 60.972 60.000 0.00 0.00 37.47 5.36
2753 2994 1.607801 GCCCTTTCCTCCATTGTGGC 61.608 60.000 0.00 0.00 37.47 5.01
2754 2995 0.251742 TGCCCTTTCCTCCATTGTGG 60.252 55.000 0.00 0.00 39.43 4.17
2755 2996 1.547372 CTTGCCCTTTCCTCCATTGTG 59.453 52.381 0.00 0.00 0.00 3.33
2756 2997 1.550869 CCTTGCCCTTTCCTCCATTGT 60.551 52.381 0.00 0.00 0.00 2.71
2757 2998 1.188863 CCTTGCCCTTTCCTCCATTG 58.811 55.000 0.00 0.00 0.00 2.82
2758 2999 1.084018 TCCTTGCCCTTTCCTCCATT 58.916 50.000 0.00 0.00 0.00 3.16
2759 3000 1.063417 CATCCTTGCCCTTTCCTCCAT 60.063 52.381 0.00 0.00 0.00 3.41
2760 3001 0.332632 CATCCTTGCCCTTTCCTCCA 59.667 55.000 0.00 0.00 0.00 3.86
2761 3002 1.039785 GCATCCTTGCCCTTTCCTCC 61.040 60.000 0.00 0.00 43.38 4.30
2762 3003 2.498077 GCATCCTTGCCCTTTCCTC 58.502 57.895 0.00 0.00 43.38 3.71
2763 3004 4.772678 GCATCCTTGCCCTTTCCT 57.227 55.556 0.00 0.00 43.38 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.