AutoCloner

Multiple sequence alignment - TraesCS6D01G341900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G341900	chr6D	100.000	3342	0	0	1	3342	441317552	441320893	0.000000e+00	6172
1	TraesCS6D01G341900	chr6D	96.965	1219	15	4	2133	3342	380785113	380786318	0.000000e+00	2026
2	TraesCS6D01G341900	chr6D	97.607	585	14	0	1	585	441398414	441398998	0.000000e+00	1003
3	TraesCS6D01G341900	chr6D	89.072	485	50	3	103	585	441101311	441101794	1.720000e-167	599
4	TraesCS6D01G341900	chr6D	91.850	319	24	2	268	585	441292904	441293221	8.510000e-121	444
5	TraesCS6D01G341900	chr6D	93.380	287	12	1	1	280	441292064	441292350	5.160000e-113	418
6	TraesCS6D01G341900	chr5D	98.300	2765	31	5	586	3342	345624933	345627689	0.000000e+00	4831
7	TraesCS6D01G341900	chr5D	94.289	1891	51	14	1477	3342	351321077	351322935	0.000000e+00	2841
8	TraesCS6D01G341900	chr5D	94.333	900	46	5	582	1479	443521250	443522146	0.000000e+00	1375
9	TraesCS6D01G341900	chr4D	97.687	2767	39	7	586	3342	489196330	489199081	0.000000e+00	4732
10	TraesCS6D01G341900	chr4D	98.264	1959	22	5	586	2541	47510427	47508478	0.000000e+00	3419
11	TraesCS6D01G341900	chr4D	93.309	1898	66	22	1477	3342	440464491	440462623	0.000000e+00	2745
12	TraesCS6D01G341900	chr4D	94.643	896	44	4	586	1479	440465454	440464561	0.000000e+00	1386
13	TraesCS6D01G341900	chr4D	98.592	781	10	1	2562	3342	47508493	47507714	0.000000e+00	1380
14	TraesCS6D01G341900	chr7D	98.384	1980	28	3	586	2564	89090799	89088823	0.000000e+00	3476
15	TraesCS6D01G341900	chr7D	94.180	1890	54	13	1478	3342	70680134	70678276	0.000000e+00	2830
16	TraesCS6D01G341900	chr7D	94.130	1891	58	12	1477	3342	596122134	596120272	0.000000e+00	2828
17	TraesCS6D01G341900	chr7D	93.601	1891	58	15	1477	3342	530866493	530864641	0.000000e+00	2763
18	TraesCS6D01G341900	chr7D	94.332	1588	39	14	1779	3342	498406724	498408284	0.000000e+00	2386
19	TraesCS6D01G341900	chr7D	93.973	896	50	4	586	1479	530867456	530866563	0.000000e+00	1352
20	TraesCS6D01G341900	chr7D	93.868	897	52	3	585	1479	11642233	11643128	0.000000e+00	1349
21	TraesCS6D01G341900	chr7D	93.750	896	51	4	586	1479	592400973	592401865	0.000000e+00	1339
22	TraesCS6D01G341900	chr7D	96.343	793	11	3	2559	3342	89086646	89085863	0.000000e+00	1288
23	TraesCS6D01G341900	chr7D	94.141	495	16	4	2851	3342	58114054	58113570	0.000000e+00	741
24	TraesCS6D01G341900	chr5B	87.671	1906	120	55	1492	3340	526431370	526433217	0.000000e+00	2111
25	TraesCS6D01G341900	chr2D	94.703	1095	39	5	586	1679	639470913	639469837	0.000000e+00	1683
26	TraesCS6D01G341900	chr2D	95.436	482	10	3	2864	3342	639469702	639469230	0.000000e+00	758
27	TraesCS6D01G341900	chr2D	94.191	482	16	4	2864	3342	345269574	345270046	0.000000e+00	725
28	TraesCS6D01G341900	chr2A	93.767	1123	52	8	1477	2596	458969839	458968732	0.000000e+00	1670
29	TraesCS6D01G341900	chr1D	94.080	1098	40	9	583	1679	71301398	71302471	0.000000e+00	1644
30	TraesCS6D01G341900	chr1D	95.436	482	10	3	2864	3342	71302606	71303078	0.000000e+00	758
31	TraesCS6D01G341900	chr6A	95.214	585	28	0	1	585	589191640	589191056	0.000000e+00	926
32	TraesCS6D01G341900	chr6A	93.333	585	38	1	1	585	589176039	589176622	0.000000e+00	863
33	TraesCS6D01G341900	chr6B	89.831	590	53	5	1	585	666177231	666177818	0.000000e+00	750
34	TraesCS6D01G341900	chr6B	89.492	590	55	5	1	585	666220786	666221373	0.000000e+00	739
35	TraesCS6D01G341900	chr6B	84.353	556	58	13	3	558	666093363	666093889	4.940000e-143	518
36	TraesCS6D01G341900	chrUn	86.667	480	38	13	1	468	349100844	349100379	2.970000e-140	508
37	TraesCS6D01G341900	chrUn	89.474	323	28	3	263	585	349100371	349100055	1.440000e-108	403

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G341900	chr6D	441317552	441320893	3341	False	6172.0	6172	100.0000	1	3342	1	chr6D.!!$F3	3341
1	TraesCS6D01G341900	chr6D	380785113	380786318	1205	False	2026.0	2026	96.9650	2133	3342	1	chr6D.!!$F1	1209
2	TraesCS6D01G341900	chr6D	441398414	441398998	584	False	1003.0	1003	97.6070	1	585	1	chr6D.!!$F4	584
3	TraesCS6D01G341900	chr6D	441292064	441293221	1157	False	431.0	444	92.6150	1	585	2	chr6D.!!$F5	584
4	TraesCS6D01G341900	chr5D	345624933	345627689	2756	False	4831.0	4831	98.3000	586	3342	1	chr5D.!!$F1	2756
5	TraesCS6D01G341900	chr5D	351321077	351322935	1858	False	2841.0	2841	94.2890	1477	3342	1	chr5D.!!$F2	1865
6	TraesCS6D01G341900	chr5D	443521250	443522146	896	False	1375.0	1375	94.3330	582	1479	1	chr5D.!!$F3	897
7	TraesCS6D01G341900	chr4D	489196330	489199081	2751	False	4732.0	4732	97.6870	586	3342	1	chr4D.!!$F1	2756
8	TraesCS6D01G341900	chr4D	47507714	47510427	2713	True	2399.5	3419	98.4280	586	3342	2	chr4D.!!$R1	2756
9	TraesCS6D01G341900	chr4D	440462623	440465454	2831	True	2065.5	2745	93.9760	586	3342	2	chr4D.!!$R2	2756
10	TraesCS6D01G341900	chr7D	70678276	70680134	1858	True	2830.0	2830	94.1800	1478	3342	1	chr7D.!!$R2	1864
11	TraesCS6D01G341900	chr7D	596120272	596122134	1862	True	2828.0	2828	94.1300	1477	3342	1	chr7D.!!$R3	1865
12	TraesCS6D01G341900	chr7D	498406724	498408284	1560	False	2386.0	2386	94.3320	1779	3342	1	chr7D.!!$F2	1563
13	TraesCS6D01G341900	chr7D	89085863	89090799	4936	True	2382.0	3476	97.3635	586	3342	2	chr7D.!!$R4	2756
14	TraesCS6D01G341900	chr7D	530864641	530867456	2815	True	2057.5	2763	93.7870	586	3342	2	chr7D.!!$R5	2756
15	TraesCS6D01G341900	chr7D	11642233	11643128	895	False	1349.0	1349	93.8680	585	1479	1	chr7D.!!$F1	894
16	TraesCS6D01G341900	chr7D	592400973	592401865	892	False	1339.0	1339	93.7500	586	1479	1	chr7D.!!$F3	893
17	TraesCS6D01G341900	chr5B	526431370	526433217	1847	False	2111.0	2111	87.6710	1492	3340	1	chr5B.!!$F1	1848
18	TraesCS6D01G341900	chr2D	639469230	639470913	1683	True	1220.5	1683	95.0695	586	3342	2	chr2D.!!$R1	2756
19	TraesCS6D01G341900	chr2A	458968732	458969839	1107	True	1670.0	1670	93.7670	1477	2596	1	chr2A.!!$R1	1119
20	TraesCS6D01G341900	chr1D	71301398	71303078	1680	False	1201.0	1644	94.7580	583	3342	2	chr1D.!!$F1	2759
21	TraesCS6D01G341900	chr6A	589191056	589191640	584	True	926.0	926	95.2140	1	585	1	chr6A.!!$R1	584
22	TraesCS6D01G341900	chr6A	589176039	589176622	583	False	863.0	863	93.3330	1	585	1	chr6A.!!$F1	584
23	TraesCS6D01G341900	chr6B	666177231	666177818	587	False	750.0	750	89.8310	1	585	1	chr6B.!!$F2	584
24	TraesCS6D01G341900	chr6B	666220786	666221373	587	False	739.0	739	89.4920	1	585	1	chr6B.!!$F3	584
25	TraesCS6D01G341900	chr6B	666093363	666093889	526	False	518.0	518	84.3530	3	558	1	chr6B.!!$F1	555
26	TraesCS6D01G341900	chrUn	349100055	349100844	789	True	455.5	508	88.0705	1	585	2	chrUn.!!$R1	584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
525	542	0.329261	TGGAGCCAGCTAAATGTGCT	59.671	50.0	0.0	0.0	42.06	4.40	F
898	916	0.681564	TCAGTCTCTTCCTCCTCGCC	60.682	60.0	0.0	0.0	0.00	5.54	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1417	1436	3.007635	CACACATCTCTGCACATCACAT	58.992	45.455	0.00	0.00	0.00	3.21	R
2549	5390	5.419155	ACTTAGCATGAGTACTCACTTAGCA	59.581	40.000	27.41	15.24	43.11	3.49	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	3.450282	TCTGGGGTTCAGTTCGAGA	57.550	52.632	0.00	0.00	43.76	4.04
314	331	5.755375	TGTTTGTTTGTGTCACAATTGTGTT	59.245	32.000	31.99	0.00	45.76	3.32
356	373	7.163001	CACAGCTAAGTGCCTGATATATAGA	57.837	40.000	0.00	0.00	44.23	1.98
389	406	1.528129	CTGTCAGGGCCTCAAAGAAC	58.472	55.000	0.95	0.00	0.00	3.01
401	418	3.006537	CCTCAAAGAACCTTGGTCTCGTA	59.993	47.826	0.00	0.00	0.00	3.43
418	435	0.970427	GTATGTTGGCCTGTTGGGGG	60.970	60.000	3.32	0.00	35.12	5.40
469	486	8.780249	GCTATTTTGGTGTCTAGAAGTTTACAA	58.220	33.333	0.00	0.00	0.00	2.41
511	528	2.503356	TGAAGATTCCTTCTCCTGGAGC	59.497	50.000	19.08	3.05	46.84	4.70
512	529	1.506025	AGATTCCTTCTCCTGGAGCC	58.494	55.000	19.08	2.24	34.76	4.70
513	530	1.207791	GATTCCTTCTCCTGGAGCCA	58.792	55.000	19.08	7.02	34.76	4.75
514	531	1.140652	GATTCCTTCTCCTGGAGCCAG	59.859	57.143	19.08	15.66	43.26	4.85
515	532	1.557269	TTCCTTCTCCTGGAGCCAGC	61.557	60.000	19.08	0.00	42.35	4.85
516	533	1.994507	CCTTCTCCTGGAGCCAGCT	60.995	63.158	19.08	0.00	42.35	4.24
517	534	0.689080	CCTTCTCCTGGAGCCAGCTA	60.689	60.000	19.08	0.00	42.35	3.32
518	535	1.198713	CTTCTCCTGGAGCCAGCTAA	58.801	55.000	19.08	6.00	42.35	3.09
519	536	1.556911	CTTCTCCTGGAGCCAGCTAAA	59.443	52.381	19.08	5.30	42.35	1.85
520	537	1.885049	TCTCCTGGAGCCAGCTAAAT	58.115	50.000	19.08	0.00	42.35	1.40
521	538	1.487976	TCTCCTGGAGCCAGCTAAATG	59.512	52.381	19.08	0.00	42.35	2.32
522	539	1.211457	CTCCTGGAGCCAGCTAAATGT	59.789	52.381	11.42	0.00	42.35	2.71
523	540	1.065199	TCCTGGAGCCAGCTAAATGTG	60.065	52.381	11.07	0.00	42.35	3.21
524	541	0.737219	CTGGAGCCAGCTAAATGTGC	59.263	55.000	3.18	0.00	37.24	4.57
525	542	0.329261	TGGAGCCAGCTAAATGTGCT	59.671	50.000	0.00	0.00	42.06	4.40
538	555	8.874744	AGCTAAATGTGCTGGATGATTAATAT	57.125	30.769	0.00	0.00	39.56	1.28
539	556	9.305555	AGCTAAATGTGCTGGATGATTAATATT	57.694	29.630	0.00	0.00	39.56	1.28
540	557	9.918630	GCTAAATGTGCTGGATGATTAATATTT	57.081	29.630	0.00	0.00	0.00	1.40
543	560	9.768662	AAATGTGCTGGATGATTAATATTTTCC	57.231	29.630	0.00	0.00	0.00	3.13
544	561	8.716674	ATGTGCTGGATGATTAATATTTTCCT	57.283	30.769	0.00	0.00	0.00	3.36
545	562	7.944061	TGTGCTGGATGATTAATATTTTCCTG	58.056	34.615	0.00	0.00	0.00	3.86
546	563	7.014518	TGTGCTGGATGATTAATATTTTCCTGG	59.985	37.037	0.00	0.00	0.00	4.45
547	564	7.231317	GTGCTGGATGATTAATATTTTCCTGGA	59.769	37.037	0.00	0.00	0.00	3.86
548	565	7.951806	TGCTGGATGATTAATATTTTCCTGGAT	59.048	33.333	0.00	0.00	0.00	3.41
549	566	9.466497	GCTGGATGATTAATATTTTCCTGGATA	57.534	33.333	0.00	0.00	0.00	2.59
748	765	1.896122	AACCCCGAATCTGACCGGTC	61.896	60.000	28.17	28.17	43.93	4.79
776	793	0.955428	GAATCAGTTGCCACGCAGGA	60.955	55.000	0.00	0.00	40.61	3.86
852	870	2.668550	GGCTGTCGGTGGTCCAAC	60.669	66.667	0.00	0.00	0.00	3.77
898	916	0.681564	TCAGTCTCTTCCTCCTCGCC	60.682	60.000	0.00	0.00	0.00	5.54
928	946	0.825840	CGTCCTCATCCTCTCCCTCC	60.826	65.000	0.00	0.00	0.00	4.30
1100	1118	5.590259	GTGCATAATGGTGGAACAGAGTTAT	59.410	40.000	0.00	0.00	41.80	1.89
1417	1436	1.832998	TGCAGCATGTGGTCAGAGATA	59.167	47.619	0.00	0.00	39.31	1.98
1561	1652	6.907748	GCTGTTAACTGAAAAAGAACAGAGTC	59.092	38.462	15.89	0.00	46.39	3.36
1569	1660	7.970614	ACTGAAAAAGAACAGAGTCAAATGAAC	59.029	33.333	0.00	0.00	37.54	3.18
2558	5399	7.949690	TGTTAAGACCTACTATGCTAAGTGA	57.050	36.000	2.24	0.00	0.00	3.41
2559	5400	7.997482	TGTTAAGACCTACTATGCTAAGTGAG	58.003	38.462	2.24	0.00	0.00	3.51
2560	5401	7.614583	TGTTAAGACCTACTATGCTAAGTGAGT	59.385	37.037	2.24	0.12	0.00	3.41
2561	5402	9.118300	GTTAAGACCTACTATGCTAAGTGAGTA	57.882	37.037	2.24	0.00	0.00	2.59
2562	5403	7.571080	AAGACCTACTATGCTAAGTGAGTAC	57.429	40.000	2.24	0.00	0.00	2.73
2563	5404	6.902408	AGACCTACTATGCTAAGTGAGTACT	58.098	40.000	0.00	0.00	39.32	2.73
2564	5405	6.993902	AGACCTACTATGCTAAGTGAGTACTC	59.006	42.308	16.32	16.32	35.69	2.59
2565	5406	6.660800	ACCTACTATGCTAAGTGAGTACTCA	58.339	40.000	21.74	21.74	35.69	3.41
2566	5407	7.291566	ACCTACTATGCTAAGTGAGTACTCAT	58.708	38.462	27.54	15.70	42.18	2.90
2663	5504	5.184096	ACTGACAGTAGTGACATAGTTGGAG	59.816	44.000	6.24	0.00	0.00	3.86
3059	5970	2.110967	CCGGCTCCAGCACATCTTG	61.111	63.158	0.03	0.00	44.36	3.02
3239	6150	0.898789	ACCTCATCCACCTCGTCGTT	60.899	55.000	0.00	0.00	0.00	3.85
3281	6207	2.167281	CCTCATCATCGTCACTGGACTT	59.833	50.000	0.00	0.00	42.05	3.01

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	1.285078	GCTTACATGGGAGGGAAAGGT	59.715	52.381	0.00	0.00	0.00	3.50
314	331	4.261155	GCTGTGCAAGTAATGTCAGACAAA	60.261	41.667	7.50	0.00	36.18	2.83
356	373	1.472878	CTGACAGCAATCAAGCAGCAT	59.527	47.619	0.00	0.00	36.85	3.79
389	406	1.369625	GCCAACATACGAGACCAAGG	58.630	55.000	0.00	0.00	0.00	3.61
401	418	2.120274	CCCCCAACAGGCCAACAT	59.880	61.111	5.01	0.00	0.00	2.71
418	435	4.038642	TGAAATTAAAGGCCCTGACACAAC	59.961	41.667	0.00	0.00	0.00	3.32
469	486	7.876068	TCTTCAACTCGTTTATACCACAGAAAT	59.124	33.333	0.00	0.00	0.00	2.17
470	487	7.211573	TCTTCAACTCGTTTATACCACAGAAA	58.788	34.615	0.00	0.00	0.00	2.52
513	530	8.874744	ATATTAATCATCCAGCACATTTAGCT	57.125	30.769	0.00	0.00	44.62	3.32
514	531	9.918630	AAATATTAATCATCCAGCACATTTAGC	57.081	29.630	0.00	0.00	0.00	3.09
517	534	9.768662	GGAAAATATTAATCATCCAGCACATTT	57.231	29.630	0.00	0.00	0.00	2.32
518	535	9.151177	AGGAAAATATTAATCATCCAGCACATT	57.849	29.630	0.00	0.00	0.00	2.71
519	536	8.582437	CAGGAAAATATTAATCATCCAGCACAT	58.418	33.333	0.00	0.00	0.00	3.21
520	537	7.014518	CCAGGAAAATATTAATCATCCAGCACA	59.985	37.037	0.00	0.00	0.00	4.57
521	538	7.231317	TCCAGGAAAATATTAATCATCCAGCAC	59.769	37.037	0.00	0.00	0.00	4.40
522	539	7.296856	TCCAGGAAAATATTAATCATCCAGCA	58.703	34.615	0.00	0.00	0.00	4.41
523	540	7.765695	TCCAGGAAAATATTAATCATCCAGC	57.234	36.000	0.00	0.00	0.00	4.85
537	554	9.484806	AATTCTCAAATCTGTATCCAGGAAAAT	57.515	29.630	0.00	0.00	39.31	1.82
538	555	8.884124	AATTCTCAAATCTGTATCCAGGAAAA	57.116	30.769	0.00	0.00	39.31	2.29
539	556	9.973661	TTAATTCTCAAATCTGTATCCAGGAAA	57.026	29.630	0.00	0.00	39.31	3.13
748	765	2.046314	AACTGATTCGTGGGCCCG	60.046	61.111	19.37	6.11	0.00	6.13
852	870	1.077645	GCTGAGCTCGCTCTCACTTG	61.078	60.000	18.63	4.90	43.12	3.16
898	916	1.380403	ATGAGGACGAGTGAGAGCGG	61.380	60.000	0.00	0.00	0.00	5.52
928	946	0.179000	CTAGCTAACAGCACCAGGGG	59.821	60.000	0.38	0.00	45.56	4.79
1100	1118	5.586155	TTTGGATGAACTAACCCTAACCA	57.414	39.130	0.00	0.00	0.00	3.67
1144	1162	5.331532	GCAAAAGAAACTTCGAATCAAACCG	60.332	40.000	0.00	0.00	0.00	4.44
1417	1436	3.007635	CACACATCTCTGCACATCACAT	58.992	45.455	0.00	0.00	0.00	3.21
2532	5373	9.636789	TCACTTAGCATAGTAGGTCTTAACATA	57.363	33.333	0.00	0.00	0.00	2.29
2533	5374	8.534954	TCACTTAGCATAGTAGGTCTTAACAT	57.465	34.615	0.00	0.00	0.00	2.71
2534	5375	7.614583	ACTCACTTAGCATAGTAGGTCTTAACA	59.385	37.037	0.00	0.00	0.00	2.41
2535	5376	7.998580	ACTCACTTAGCATAGTAGGTCTTAAC	58.001	38.462	0.00	0.00	0.00	2.01
2536	5377	9.118300	GTACTCACTTAGCATAGTAGGTCTTAA	57.882	37.037	0.00	0.00	0.00	1.85
2537	5378	8.492782	AGTACTCACTTAGCATAGTAGGTCTTA	58.507	37.037	0.00	0.00	0.00	2.10
2538	5379	7.348033	AGTACTCACTTAGCATAGTAGGTCTT	58.652	38.462	0.00	0.00	0.00	3.01
2539	5380	6.902408	AGTACTCACTTAGCATAGTAGGTCT	58.098	40.000	0.00	0.00	0.00	3.85
2540	5381	6.766944	TGAGTACTCACTTAGCATAGTAGGTC	59.233	42.308	21.74	0.00	34.21	3.85
2541	5382	6.660800	TGAGTACTCACTTAGCATAGTAGGT	58.339	40.000	21.74	0.00	34.21	3.08
2542	5383	7.589395	CATGAGTACTCACTTAGCATAGTAGG	58.411	42.308	27.41	0.00	43.11	3.18
2543	5384	7.040755	AGCATGAGTACTCACTTAGCATAGTAG	60.041	40.741	27.41	4.75	43.11	2.57
2544	5385	6.773200	AGCATGAGTACTCACTTAGCATAGTA	59.227	38.462	27.41	0.23	43.11	1.82
2545	5386	5.596361	AGCATGAGTACTCACTTAGCATAGT	59.404	40.000	27.41	10.44	43.11	2.12
2546	5387	6.083098	AGCATGAGTACTCACTTAGCATAG	57.917	41.667	27.41	9.91	43.11	2.23
2547	5388	7.285629	ACTTAGCATGAGTACTCACTTAGCATA	59.714	37.037	27.41	17.07	43.11	3.14
2548	5389	6.097554	ACTTAGCATGAGTACTCACTTAGCAT	59.902	38.462	27.41	17.90	43.11	3.79
2549	5390	5.419155	ACTTAGCATGAGTACTCACTTAGCA	59.581	40.000	27.41	15.24	43.11	3.49
2550	5391	5.897050	ACTTAGCATGAGTACTCACTTAGC	58.103	41.667	27.41	24.90	43.11	3.09
2551	5392	9.509855	CTTAACTTAGCATGAGTACTCACTTAG	57.490	37.037	27.41	22.78	43.11	2.18
2552	5393	9.021807	ACTTAACTTAGCATGAGTACTCACTTA	57.978	33.333	27.41	16.24	43.11	2.24
2553	5394	7.897864	ACTTAACTTAGCATGAGTACTCACTT	58.102	34.615	27.41	17.19	43.11	3.16
2554	5395	7.469537	ACTTAACTTAGCATGAGTACTCACT	57.530	36.000	27.41	21.64	43.11	3.41
2555	5396	9.291664	CTTACTTAACTTAGCATGAGTACTCAC	57.708	37.037	27.41	15.78	43.11	3.51
2556	5397	9.021807	ACTTACTTAACTTAGCATGAGTACTCA	57.978	33.333	27.07	27.07	44.59	3.41
3239	6150	0.462225	CGAGCCCTCTGACGACTCTA	60.462	60.000	0.00	0.00	0.00	2.43
3281	6207	1.578206	CTCTGACGACTCTGACGGCA	61.578	60.000	0.00	0.00	46.66	5.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.