Multiple sequence alignment - TraesCS6D01G340700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G340700 chr6D 100.000 4337 0 0 1 4337 439804683 439809019 0.000000e+00 8010.0
1 TraesCS6D01G340700 chr6D 90.691 376 31 4 2122 2494 27459155 27458781 8.380000e-137 497.0
2 TraesCS6D01G340700 chr6D 77.827 451 78 5 32 478 461421893 461422325 4.300000e-65 259.0
3 TraesCS6D01G340700 chr6A 93.897 1491 64 14 651 2124 588230075 588231555 0.000000e+00 2224.0
4 TraesCS6D01G340700 chr6A 91.932 1475 73 18 2498 3939 588231555 588233016 0.000000e+00 2023.0
5 TraesCS6D01G340700 chr6B 93.271 1174 48 11 534 1691 664833956 664835114 0.000000e+00 1701.0
6 TraesCS6D01G340700 chr6B 93.347 481 30 2 1 481 664833473 664833951 0.000000e+00 710.0
7 TraesCS6D01G340700 chr6B 97.311 409 10 1 3149 3557 664836091 664836498 0.000000e+00 693.0
8 TraesCS6D01G340700 chr6B 90.052 382 36 2 2123 2502 640627218 640626837 1.080000e-135 494.0
9 TraesCS6D01G340700 chr4D 95.630 389 13 4 2112 2499 353502750 353502365 4.760000e-174 621.0
10 TraesCS6D01G340700 chr4D 90.551 381 27 7 2123 2499 60175493 60175118 3.010000e-136 496.0
11 TraesCS6D01G340700 chr4D 90.289 381 28 7 2123 2499 60170514 60170889 1.400000e-134 490.0
12 TraesCS6D01G340700 chr4D 97.112 277 8 0 3936 4212 228617568 228617844 6.570000e-128 468.0
13 TraesCS6D01G340700 chr7D 90.814 381 28 5 2123 2500 556776446 556776822 1.800000e-138 503.0
14 TraesCS6D01G340700 chr7D 90.551 381 28 6 2123 2499 496720572 496720948 8.380000e-137 497.0
15 TraesCS6D01G340700 chr7D 95.730 281 12 0 3936 4216 154397485 154397765 1.840000e-123 453.0
16 TraesCS6D01G340700 chr7D 75.277 271 62 3 2647 2914 90898135 90898403 1.640000e-24 124.0
17 TraesCS6D01G340700 chr5A 89.870 385 37 2 2117 2499 287582781 287583165 1.080000e-135 494.0
18 TraesCS6D01G340700 chr3A 90.052 382 33 5 2122 2499 498526427 498526807 1.400000e-134 490.0
19 TraesCS6D01G340700 chr3D 97.143 280 8 0 3936 4215 40488236 40487957 1.410000e-129 473.0
20 TraesCS6D01G340700 chr3D 75.706 354 64 17 1 344 436674110 436673769 1.610000e-34 158.0
21 TraesCS6D01G340700 chrUn 97.091 275 8 0 3938 4212 42712376 42712650 8.500000e-127 464.0
22 TraesCS6D01G340700 chrUn 97.091 275 8 0 3938 4212 42713764 42714038 8.500000e-127 464.0
23 TraesCS6D01G340700 chrUn 97.091 275 8 0 3938 4212 329559586 329559860 8.500000e-127 464.0
24 TraesCS6D01G340700 chrUn 97.091 275 8 0 3938 4212 329972644 329972918 8.500000e-127 464.0
25 TraesCS6D01G340700 chr1D 96.364 275 10 0 3938 4212 416602294 416602020 1.840000e-123 453.0
26 TraesCS6D01G340700 chr1D 85.000 280 38 2 1101 1377 160177121 160176843 9.180000e-72 281.0
27 TraesCS6D01G340700 chr1D 85.567 97 12 1 505 601 487620809 487620903 2.760000e-17 100.0
28 TraesCS6D01G340700 chr2A 95.714 280 12 0 3935 4214 16370519 16370240 6.610000e-123 451.0
29 TraesCS6D01G340700 chr3B 77.091 275 58 4 2647 2919 126891446 126891175 2.090000e-33 154.0
30 TraesCS6D01G340700 chr1B 77.091 275 58 5 2647 2919 43804257 43804528 2.090000e-33 154.0
31 TraesCS6D01G340700 chr1B 86.111 108 13 1 494 601 679191298 679191403 9.860000e-22 115.0
32 TraesCS6D01G340700 chr7A 73.515 404 80 18 40 436 57977716 57978099 1.270000e-25 128.0
33 TraesCS6D01G340700 chr5D 75.862 203 45 1 99 297 556094899 556095101 2.760000e-17 100.0
34 TraesCS6D01G340700 chr2B 86.585 82 8 1 167 245 568680537 568680456 2.150000e-13 87.9
35 TraesCS6D01G340700 chr5B 90.769 65 5 1 496 560 703232725 703232788 7.730000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G340700 chr6D 439804683 439809019 4336 False 8010.000000 8010 100.0000 1 4337 1 chr6D.!!$F1 4336
1 TraesCS6D01G340700 chr6A 588230075 588233016 2941 False 2123.500000 2224 92.9145 651 3939 2 chr6A.!!$F1 3288
2 TraesCS6D01G340700 chr6B 664833473 664836498 3025 False 1034.666667 1701 94.6430 1 3557 3 chr6B.!!$F1 3556
3 TraesCS6D01G340700 chrUn 42712376 42714038 1662 False 464.000000 464 97.0910 3938 4212 2 chrUn.!!$F3 274

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
370 371 0.034896 GTGAAGGCTTCGGACTCCAA 59.965 55.0 21.42 0.0 29.57 3.53 F
806 818 0.039798 GGATAACGTATCGCGAGCCA 60.040 55.0 16.66 0.0 44.77 4.75 F
2142 2213 0.037605 ACTAGAGAAAACCCCGTGCG 60.038 55.0 0.00 0.0 0.00 5.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2123 2194 0.037605 CGCACGGGGTTTTCTCTAGT 60.038 55.0 0.00 0.0 0.00 2.57 R
2416 2487 0.038744 CTCATCAAAGGCCCACCACT 59.961 55.0 0.00 0.0 39.06 4.00 R
3605 3763 0.681733 TCTTCTGGGCACTCTGTGAC 59.318 55.0 1.52 0.0 41.56 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.853330 CTGGCGAATGGCGTGTCG 61.853 66.667 6.85 6.85 44.92 4.35
38 39 3.186047 CGAATGGCGTGTCGTCCC 61.186 66.667 4.00 0.00 34.64 4.46
241 242 4.500116 GGAGTCGCACTCTCCGGC 62.500 72.222 13.59 0.00 44.46 6.13
336 337 3.235195 GACGGATTTATCATCGACCTCG 58.765 50.000 0.00 0.00 41.45 4.63
368 369 1.446272 CGTGAAGGCTTCGGACTCC 60.446 63.158 21.42 5.07 29.57 3.85
370 371 0.034896 GTGAAGGCTTCGGACTCCAA 59.965 55.000 21.42 0.00 29.57 3.53
397 398 3.853355 AGAGTTAGGCATGGAAGATGG 57.147 47.619 0.00 0.00 0.00 3.51
401 402 2.908940 GGCATGGAAGATGGCGGG 60.909 66.667 0.00 0.00 34.93 6.13
404 405 3.099170 ATGGAAGATGGCGGGGCT 61.099 61.111 0.00 0.00 0.00 5.19
444 445 1.622725 GGGTGTCTCATGTCCTACCCT 60.623 57.143 17.73 0.00 43.43 4.34
445 446 1.482593 GGTGTCTCATGTCCTACCCTG 59.517 57.143 0.00 0.00 0.00 4.45
451 452 1.001760 ATGTCCTACCCTGCCTCGT 59.998 57.895 0.00 0.00 0.00 4.18
452 453 1.043673 ATGTCCTACCCTGCCTCGTC 61.044 60.000 0.00 0.00 0.00 4.20
458 459 0.820891 TACCCTGCCTCGTCGGATAC 60.821 60.000 0.00 0.00 33.16 2.24
472 473 2.014128 CGGATACCGGAGCAACATTTT 58.986 47.619 9.46 0.00 44.15 1.82
473 474 2.223249 CGGATACCGGAGCAACATTTTG 60.223 50.000 9.46 0.00 44.15 2.44
474 475 3.013921 GGATACCGGAGCAACATTTTGA 58.986 45.455 9.46 0.00 34.24 2.69
495 496 3.483869 GGGACAGCTAGCCCCCAG 61.484 72.222 24.60 9.16 38.45 4.45
496 497 2.365635 GGACAGCTAGCCCCCAGA 60.366 66.667 12.13 0.00 0.00 3.86
497 498 2.736826 GGACAGCTAGCCCCCAGAC 61.737 68.421 12.13 0.00 0.00 3.51
498 499 3.077556 ACAGCTAGCCCCCAGACG 61.078 66.667 12.13 0.00 0.00 4.18
499 500 2.759973 CAGCTAGCCCCCAGACGA 60.760 66.667 12.13 0.00 0.00 4.20
500 501 2.443016 AGCTAGCCCCCAGACGAG 60.443 66.667 12.13 0.00 0.00 4.18
501 502 4.228567 GCTAGCCCCCAGACGAGC 62.229 72.222 2.29 0.00 0.00 5.03
502 503 2.443016 CTAGCCCCCAGACGAGCT 60.443 66.667 0.00 0.00 39.37 4.09
503 504 2.442272 TAGCCCCCAGACGAGCTC 60.442 66.667 2.73 2.73 36.79 4.09
508 509 3.764466 CCCAGACGAGCTCCGCTT 61.764 66.667 8.47 0.00 39.88 4.68
509 510 2.415608 CCCAGACGAGCTCCGCTTA 61.416 63.158 8.47 0.00 39.88 3.09
510 511 1.064946 CCAGACGAGCTCCGCTTAG 59.935 63.158 8.47 0.00 39.88 2.18
511 512 1.377366 CCAGACGAGCTCCGCTTAGA 61.377 60.000 8.47 0.00 39.88 2.10
512 513 0.665835 CAGACGAGCTCCGCTTAGAT 59.334 55.000 8.47 0.00 39.88 1.98
513 514 1.066303 CAGACGAGCTCCGCTTAGATT 59.934 52.381 8.47 0.00 39.88 2.40
514 515 2.290916 CAGACGAGCTCCGCTTAGATTA 59.709 50.000 8.47 0.00 39.88 1.75
515 516 2.550606 AGACGAGCTCCGCTTAGATTAG 59.449 50.000 8.47 0.00 39.88 1.73
516 517 2.548904 GACGAGCTCCGCTTAGATTAGA 59.451 50.000 8.47 0.00 39.88 2.10
517 518 3.150767 ACGAGCTCCGCTTAGATTAGAT 58.849 45.455 8.47 0.00 39.88 1.98
518 519 3.570550 ACGAGCTCCGCTTAGATTAGATT 59.429 43.478 8.47 0.00 39.88 2.40
519 520 4.038162 ACGAGCTCCGCTTAGATTAGATTT 59.962 41.667 8.47 0.00 39.88 2.17
520 521 4.619336 CGAGCTCCGCTTAGATTAGATTTC 59.381 45.833 8.47 0.00 39.88 2.17
521 522 5.533482 GAGCTCCGCTTAGATTAGATTTCA 58.467 41.667 0.87 0.00 39.88 2.69
522 523 5.293560 AGCTCCGCTTAGATTAGATTTCAC 58.706 41.667 0.00 0.00 33.89 3.18
523 524 5.050490 GCTCCGCTTAGATTAGATTTCACA 58.950 41.667 0.00 0.00 0.00 3.58
524 525 5.698545 GCTCCGCTTAGATTAGATTTCACAT 59.301 40.000 0.00 0.00 0.00 3.21
525 526 6.203723 GCTCCGCTTAGATTAGATTTCACATT 59.796 38.462 0.00 0.00 0.00 2.71
526 527 7.482654 TCCGCTTAGATTAGATTTCACATTG 57.517 36.000 0.00 0.00 0.00 2.82
527 528 6.483307 TCCGCTTAGATTAGATTTCACATTGG 59.517 38.462 0.00 0.00 0.00 3.16
528 529 6.483307 CCGCTTAGATTAGATTTCACATTGGA 59.517 38.462 0.00 0.00 0.00 3.53
529 530 7.173907 CCGCTTAGATTAGATTTCACATTGGAT 59.826 37.037 0.00 0.00 0.00 3.41
530 531 8.013947 CGCTTAGATTAGATTTCACATTGGATG 58.986 37.037 0.00 0.00 0.00 3.51
531 532 8.844244 GCTTAGATTAGATTTCACATTGGATGT 58.156 33.333 0.00 0.00 46.22 3.06
704 709 1.002430 AGCAGAGTACCACCACATGTG 59.998 52.381 19.31 19.31 45.01 3.21
776 788 3.422603 CGGTTAGAAATTCCACACGAACG 60.423 47.826 0.00 0.00 31.79 3.95
782 794 1.760479 ATTCCACACGAACGGGTCCA 61.760 55.000 0.00 0.00 31.79 4.02
806 818 0.039798 GGATAACGTATCGCGAGCCA 60.040 55.000 16.66 0.00 44.77 4.75
1125 1141 1.073199 CAAGGTCGACAAGCCCCTT 59.927 57.895 18.91 7.43 37.80 3.95
1151 1167 2.111878 CGTCATCAGCCATCCCCC 59.888 66.667 0.00 0.00 0.00 5.40
1175 1196 3.044059 GCATGCGACCTCCAACTGC 62.044 63.158 0.00 0.00 0.00 4.40
1183 1204 0.839946 ACCTCCAACTGCTGTGTTCT 59.160 50.000 0.00 0.00 0.00 3.01
1337 1364 0.320697 AGAAGGGCGTGTACCAGTTC 59.679 55.000 0.00 0.00 0.00 3.01
1386 1413 2.614734 GGCTACAGGTAACCCAACAGAC 60.615 54.545 0.00 0.00 37.17 3.51
1395 1422 4.396166 GGTAACCCAACAGACATGAATGAG 59.604 45.833 0.00 0.00 0.00 2.90
1418 1445 6.180472 AGATATTGTTTGGTAGACCTTGGTG 58.820 40.000 0.00 0.00 36.82 4.17
1419 1446 2.649531 TGTTTGGTAGACCTTGGTGG 57.350 50.000 0.00 0.00 42.93 4.61
1437 1464 1.017387 GGAACTGGCATCGATTGGTC 58.983 55.000 0.00 0.00 0.00 4.02
1449 1476 2.231721 TCGATTGGTCACGTGATTACCA 59.768 45.455 23.12 21.52 41.47 3.25
1671 1698 3.618019 GCACACCTGTACCCGATTAAAGA 60.618 47.826 0.00 0.00 0.00 2.52
1767 1799 5.444176 AGCTGCAAATCTAAGCTTATTCCT 58.556 37.500 6.64 0.00 44.79 3.36
1768 1800 5.298777 AGCTGCAAATCTAAGCTTATTCCTG 59.701 40.000 6.64 4.29 44.79 3.86
1834 1869 9.950496 ATAGAGAAGAGATGAAAGTTTTGCTTA 57.050 29.630 0.00 0.00 36.17 3.09
1915 1950 7.698836 GTAATTGGCAATGTGAATTACCATC 57.301 36.000 14.47 0.00 36.90 3.51
1936 1971 6.535508 CCATCTAGTTAGAGGTGCTTGTTTAC 59.464 42.308 0.82 0.00 35.50 2.01
2098 2169 6.466097 GCTCATGATTCAAACGCTTACTAAAC 59.534 38.462 0.00 0.00 0.00 2.01
2105 2176 7.591006 TTCAAACGCTTACTAAACCATAGAG 57.409 36.000 0.00 0.00 0.00 2.43
2128 2199 9.418839 AGAGCATGCATATCTATGATAACTAGA 57.581 33.333 21.98 0.00 35.75 2.43
2129 2200 9.681692 GAGCATGCATATCTATGATAACTAGAG 57.318 37.037 21.98 0.00 35.75 2.43
2130 2201 9.418839 AGCATGCATATCTATGATAACTAGAGA 57.581 33.333 21.98 0.00 35.75 3.10
2138 2209 7.286215 TCTATGATAACTAGAGAAAACCCCG 57.714 40.000 0.00 0.00 0.00 5.73
2139 2210 5.952347 ATGATAACTAGAGAAAACCCCGT 57.048 39.130 0.00 0.00 0.00 5.28
2140 2211 5.080969 TGATAACTAGAGAAAACCCCGTG 57.919 43.478 0.00 0.00 0.00 4.94
2141 2212 2.180432 AACTAGAGAAAACCCCGTGC 57.820 50.000 0.00 0.00 0.00 5.34
2142 2213 0.037605 ACTAGAGAAAACCCCGTGCG 60.038 55.000 0.00 0.00 0.00 5.34
2143 2214 0.037605 CTAGAGAAAACCCCGTGCGT 60.038 55.000 0.00 0.00 0.00 5.24
2144 2215 0.393820 TAGAGAAAACCCCGTGCGTT 59.606 50.000 0.00 0.00 0.00 4.84
2145 2216 1.164041 AGAGAAAACCCCGTGCGTTG 61.164 55.000 0.00 0.00 0.00 4.10
2146 2217 2.354188 GAAAACCCCGTGCGTTGC 60.354 61.111 0.00 0.00 0.00 4.17
2147 2218 2.831284 AAAACCCCGTGCGTTGCT 60.831 55.556 0.00 0.00 0.00 3.91
2148 2219 2.999363 GAAAACCCCGTGCGTTGCTG 62.999 60.000 0.00 0.00 0.00 4.41
2155 2226 3.737172 GTGCGTTGCTGCGGGAAT 61.737 61.111 1.67 0.00 37.81 3.01
2156 2227 2.983030 TGCGTTGCTGCGGGAATT 60.983 55.556 1.67 0.00 37.81 2.17
2157 2228 2.504681 GCGTTGCTGCGGGAATTG 60.505 61.111 1.67 0.00 0.00 2.32
2158 2229 2.976840 GCGTTGCTGCGGGAATTGA 61.977 57.895 1.67 0.00 0.00 2.57
2159 2230 1.802636 CGTTGCTGCGGGAATTGAT 59.197 52.632 1.67 0.00 0.00 2.57
2160 2231 0.171007 CGTTGCTGCGGGAATTGATT 59.829 50.000 1.67 0.00 0.00 2.57
2161 2232 1.632422 GTTGCTGCGGGAATTGATTG 58.368 50.000 1.67 0.00 0.00 2.67
2162 2233 0.108709 TTGCTGCGGGAATTGATTGC 60.109 50.000 0.00 0.00 0.00 3.56
2163 2234 1.249469 TGCTGCGGGAATTGATTGCA 61.249 50.000 0.00 0.00 0.00 4.08
2164 2235 0.108709 GCTGCGGGAATTGATTGCAA 60.109 50.000 0.00 0.00 38.60 4.08
2165 2236 1.472026 GCTGCGGGAATTGATTGCAAT 60.472 47.619 12.83 12.83 46.35 3.56
2166 2237 2.223782 GCTGCGGGAATTGATTGCAATA 60.224 45.455 12.97 0.00 43.71 1.90
2167 2238 3.553508 GCTGCGGGAATTGATTGCAATAT 60.554 43.478 12.97 0.00 43.71 1.28
2168 2239 4.321156 GCTGCGGGAATTGATTGCAATATA 60.321 41.667 12.97 3.54 43.71 0.86
2169 2240 5.622914 GCTGCGGGAATTGATTGCAATATAT 60.623 40.000 12.97 5.94 43.71 0.86
2170 2241 6.343716 TGCGGGAATTGATTGCAATATATT 57.656 33.333 12.97 14.17 43.71 1.28
2171 2242 6.757237 TGCGGGAATTGATTGCAATATATTT 58.243 32.000 12.97 7.36 43.71 1.40
2172 2243 6.867816 TGCGGGAATTGATTGCAATATATTTC 59.132 34.615 12.97 12.79 43.71 2.17
2173 2244 6.033831 GCGGGAATTGATTGCAATATATTTCG 59.966 38.462 12.97 19.14 43.71 3.46
2174 2245 6.527722 CGGGAATTGATTGCAATATATTTCGG 59.472 38.462 12.97 13.05 43.71 4.30
2175 2246 7.378181 GGGAATTGATTGCAATATATTTCGGT 58.622 34.615 12.97 0.00 43.71 4.69
2176 2247 7.329226 GGGAATTGATTGCAATATATTTCGGTG 59.671 37.037 12.97 0.00 43.71 4.94
2177 2248 8.081633 GGAATTGATTGCAATATATTTCGGTGA 58.918 33.333 12.97 0.00 43.71 4.02
2178 2249 9.630098 GAATTGATTGCAATATATTTCGGTGAT 57.370 29.630 12.97 0.00 43.71 3.06
2179 2250 9.985730 AATTGATTGCAATATATTTCGGTGATT 57.014 25.926 12.97 0.00 43.71 2.57
2180 2251 9.985730 ATTGATTGCAATATATTTCGGTGATTT 57.014 25.926 12.97 0.00 42.73 2.17
2181 2252 8.800231 TGATTGCAATATATTTCGGTGATTTG 57.200 30.769 12.97 0.00 0.00 2.32
2182 2253 8.628280 TGATTGCAATATATTTCGGTGATTTGA 58.372 29.630 12.97 0.00 0.00 2.69
2183 2254 9.630098 GATTGCAATATATTTCGGTGATTTGAT 57.370 29.630 12.97 0.00 0.00 2.57
2184 2255 9.985730 ATTGCAATATATTTCGGTGATTTGATT 57.014 25.926 11.02 0.00 0.00 2.57
2185 2256 8.800231 TGCAATATATTTCGGTGATTTGATTG 57.200 30.769 0.00 0.00 0.00 2.67
2186 2257 8.412456 TGCAATATATTTCGGTGATTTGATTGT 58.588 29.630 0.00 0.00 0.00 2.71
2187 2258 9.891828 GCAATATATTTCGGTGATTTGATTGTA 57.108 29.630 0.00 0.00 0.00 2.41
2193 2264 5.484173 TCGGTGATTTGATTGTATGAAGC 57.516 39.130 0.00 0.00 0.00 3.86
2194 2265 5.185454 TCGGTGATTTGATTGTATGAAGCT 58.815 37.500 0.00 0.00 0.00 3.74
2195 2266 5.647658 TCGGTGATTTGATTGTATGAAGCTT 59.352 36.000 0.00 0.00 0.00 3.74
2196 2267 5.967674 CGGTGATTTGATTGTATGAAGCTTC 59.032 40.000 19.89 19.89 0.00 3.86
2197 2268 6.268566 GGTGATTTGATTGTATGAAGCTTCC 58.731 40.000 23.42 9.01 0.00 3.46
2198 2269 6.127647 GGTGATTTGATTGTATGAAGCTTCCA 60.128 38.462 23.42 11.60 0.00 3.53
2199 2270 7.417116 GGTGATTTGATTGTATGAAGCTTCCAT 60.417 37.037 23.42 17.64 0.00 3.41
2200 2271 7.646922 GTGATTTGATTGTATGAAGCTTCCATC 59.353 37.037 23.42 15.60 0.00 3.51
2201 2272 7.339976 TGATTTGATTGTATGAAGCTTCCATCA 59.660 33.333 23.42 17.63 0.00 3.07
2202 2273 7.649533 TTTGATTGTATGAAGCTTCCATCAT 57.350 32.000 23.42 13.39 39.50 2.45
2203 2274 7.649533 TTGATTGTATGAAGCTTCCATCATT 57.350 32.000 23.42 14.19 37.46 2.57
2204 2275 7.034685 TGATTGTATGAAGCTTCCATCATTG 57.965 36.000 23.42 0.00 37.46 2.82
2205 2276 6.829811 TGATTGTATGAAGCTTCCATCATTGA 59.170 34.615 23.42 2.55 37.46 2.57
2206 2277 7.339976 TGATTGTATGAAGCTTCCATCATTGAA 59.660 33.333 23.42 7.73 37.46 2.69
2207 2278 7.649533 TTGTATGAAGCTTCCATCATTGAAT 57.350 32.000 23.42 9.36 37.46 2.57
2208 2279 7.649533 TGTATGAAGCTTCCATCATTGAATT 57.350 32.000 23.42 0.00 37.46 2.17
2209 2280 8.750515 TGTATGAAGCTTCCATCATTGAATTA 57.249 30.769 23.42 0.26 37.46 1.40
2210 2281 9.187996 TGTATGAAGCTTCCATCATTGAATTAA 57.812 29.630 23.42 0.00 37.46 1.40
2294 2365 8.988934 TCAGAAGATATTTTGAATATACGTGGC 58.011 33.333 0.00 0.00 0.00 5.01
2295 2366 8.773645 CAGAAGATATTTTGAATATACGTGGCA 58.226 33.333 0.00 0.00 0.00 4.92
2296 2367 9.507329 AGAAGATATTTTGAATATACGTGGCAT 57.493 29.630 0.00 0.00 0.00 4.40
2311 2382 5.025986 CGTGGCATAACGTAAAGAAAACT 57.974 39.130 0.00 0.00 38.74 2.66
2312 2383 5.445845 CGTGGCATAACGTAAAGAAAACTT 58.554 37.500 0.00 0.00 38.74 2.66
2313 2384 5.562623 CGTGGCATAACGTAAAGAAAACTTC 59.437 40.000 0.00 0.00 38.74 3.01
2314 2385 6.565247 CGTGGCATAACGTAAAGAAAACTTCT 60.565 38.462 0.00 0.00 39.10 2.85
2315 2386 7.990229 CGTGGCATAACGTAAAGAAAACTTCTT 60.990 37.037 0.00 0.00 43.71 2.52
2330 2401 9.635520 AGAAAACTTCTTTTCATGCATATTGAG 57.364 29.630 0.00 0.00 45.43 3.02
2331 2402 9.415544 GAAAACTTCTTTTCATGCATATTGAGT 57.584 29.630 0.00 0.00 43.36 3.41
2332 2403 8.752766 AAACTTCTTTTCATGCATATTGAGTG 57.247 30.769 0.00 0.00 0.00 3.51
2333 2404 6.860080 ACTTCTTTTCATGCATATTGAGTGG 58.140 36.000 0.00 0.00 0.00 4.00
2334 2405 6.660521 ACTTCTTTTCATGCATATTGAGTGGA 59.339 34.615 0.00 0.00 0.00 4.02
2335 2406 6.441093 TCTTTTCATGCATATTGAGTGGAC 57.559 37.500 0.00 0.00 0.00 4.02
2336 2407 5.357878 TCTTTTCATGCATATTGAGTGGACC 59.642 40.000 0.00 0.00 0.00 4.46
2337 2408 4.508551 TTCATGCATATTGAGTGGACCT 57.491 40.909 0.00 0.00 0.00 3.85
2338 2409 4.508551 TCATGCATATTGAGTGGACCTT 57.491 40.909 0.00 0.00 0.00 3.50
2339 2410 4.858850 TCATGCATATTGAGTGGACCTTT 58.141 39.130 0.00 0.00 0.00 3.11
2340 2411 4.641541 TCATGCATATTGAGTGGACCTTTG 59.358 41.667 0.00 0.00 0.00 2.77
2341 2412 3.355378 TGCATATTGAGTGGACCTTTGG 58.645 45.455 0.00 0.00 0.00 3.28
2342 2413 3.245229 TGCATATTGAGTGGACCTTTGGT 60.245 43.478 0.00 0.00 39.44 3.67
2343 2414 3.129287 GCATATTGAGTGGACCTTTGGTG 59.871 47.826 0.00 0.00 35.25 4.17
2344 2415 4.335416 CATATTGAGTGGACCTTTGGTGT 58.665 43.478 0.00 0.00 35.25 4.16
2345 2416 2.051334 TTGAGTGGACCTTTGGTGTG 57.949 50.000 0.00 0.00 35.25 3.82
2346 2417 0.182537 TGAGTGGACCTTTGGTGTGG 59.817 55.000 0.00 0.00 35.25 4.17
2347 2418 0.182775 GAGTGGACCTTTGGTGTGGT 59.817 55.000 0.00 0.00 35.25 4.16
2348 2419 0.106719 AGTGGACCTTTGGTGTGGTG 60.107 55.000 0.00 0.00 35.25 4.17
2349 2420 0.106918 GTGGACCTTTGGTGTGGTGA 60.107 55.000 0.00 0.00 35.25 4.02
2350 2421 0.106918 TGGACCTTTGGTGTGGTGAC 60.107 55.000 0.00 0.00 35.25 3.67
2351 2422 0.106918 GGACCTTTGGTGTGGTGACA 60.107 55.000 0.00 0.00 35.25 3.58
2352 2423 1.478654 GGACCTTTGGTGTGGTGACAT 60.479 52.381 0.00 0.00 38.52 3.06
2353 2424 2.224670 GGACCTTTGGTGTGGTGACATA 60.225 50.000 0.00 0.00 38.52 2.29
2354 2425 3.561313 GGACCTTTGGTGTGGTGACATAT 60.561 47.826 0.00 0.00 38.52 1.78
2355 2426 3.420893 ACCTTTGGTGTGGTGACATATG 58.579 45.455 0.00 0.00 46.14 1.78
2356 2427 3.181434 ACCTTTGGTGTGGTGACATATGT 60.181 43.478 8.43 8.43 46.14 2.29
2357 2428 3.191162 CCTTTGGTGTGGTGACATATGTG 59.809 47.826 14.43 0.00 46.14 3.21
2358 2429 3.778954 TTGGTGTGGTGACATATGTGA 57.221 42.857 14.43 0.68 46.14 3.58
2359 2430 3.998913 TGGTGTGGTGACATATGTGAT 57.001 42.857 14.43 0.00 46.14 3.06
2360 2431 3.608796 TGGTGTGGTGACATATGTGATG 58.391 45.455 14.43 0.00 46.14 3.07
2361 2432 2.945008 GGTGTGGTGACATATGTGATGG 59.055 50.000 14.43 0.00 46.14 3.51
2362 2433 2.945008 GTGTGGTGACATATGTGATGGG 59.055 50.000 14.43 0.00 46.14 4.00
2363 2434 2.092484 TGTGGTGACATATGTGATGGGG 60.092 50.000 14.43 0.00 46.14 4.96
2364 2435 2.092429 GTGGTGACATATGTGATGGGGT 60.092 50.000 14.43 0.00 46.14 4.95
2365 2436 3.135712 GTGGTGACATATGTGATGGGGTA 59.864 47.826 14.43 0.00 46.14 3.69
2366 2437 3.783082 TGGTGACATATGTGATGGGGTAA 59.217 43.478 14.43 0.00 33.40 2.85
2367 2438 4.228438 TGGTGACATATGTGATGGGGTAAA 59.772 41.667 14.43 0.00 33.40 2.01
2368 2439 5.197451 GGTGACATATGTGATGGGGTAAAA 58.803 41.667 14.43 0.00 0.00 1.52
2369 2440 5.299279 GGTGACATATGTGATGGGGTAAAAG 59.701 44.000 14.43 0.00 0.00 2.27
2370 2441 6.119536 GTGACATATGTGATGGGGTAAAAGA 58.880 40.000 14.43 0.00 0.00 2.52
2371 2442 6.772716 GTGACATATGTGATGGGGTAAAAGAT 59.227 38.462 14.43 0.00 0.00 2.40
2372 2443 6.772233 TGACATATGTGATGGGGTAAAAGATG 59.228 38.462 14.43 0.00 0.00 2.90
2373 2444 6.672593 ACATATGTGATGGGGTAAAAGATGT 58.327 36.000 7.78 0.00 0.00 3.06
2374 2445 6.547141 ACATATGTGATGGGGTAAAAGATGTG 59.453 38.462 7.78 0.00 0.00 3.21
2375 2446 3.088532 TGTGATGGGGTAAAAGATGTGC 58.911 45.455 0.00 0.00 0.00 4.57
2376 2447 3.088532 GTGATGGGGTAAAAGATGTGCA 58.911 45.455 0.00 0.00 0.00 4.57
2377 2448 3.701040 GTGATGGGGTAAAAGATGTGCAT 59.299 43.478 0.00 0.00 0.00 3.96
2378 2449 3.700539 TGATGGGGTAAAAGATGTGCATG 59.299 43.478 0.00 0.00 0.00 4.06
2379 2450 3.448093 TGGGGTAAAAGATGTGCATGA 57.552 42.857 0.00 0.00 0.00 3.07
2380 2451 3.355378 TGGGGTAAAAGATGTGCATGAG 58.645 45.455 0.00 0.00 0.00 2.90
2381 2452 3.010027 TGGGGTAAAAGATGTGCATGAGA 59.990 43.478 0.00 0.00 0.00 3.27
2382 2453 4.210331 GGGGTAAAAGATGTGCATGAGAT 58.790 43.478 0.00 0.00 0.00 2.75
2383 2454 4.276926 GGGGTAAAAGATGTGCATGAGATC 59.723 45.833 0.00 0.00 0.00 2.75
2384 2455 4.883585 GGGTAAAAGATGTGCATGAGATCA 59.116 41.667 0.00 0.00 0.00 2.92
2385 2456 5.357878 GGGTAAAAGATGTGCATGAGATCAA 59.642 40.000 0.00 0.00 0.00 2.57
2386 2457 6.261118 GGTAAAAGATGTGCATGAGATCAAC 58.739 40.000 0.00 0.00 0.00 3.18
2387 2458 6.094603 GGTAAAAGATGTGCATGAGATCAACT 59.905 38.462 0.00 0.00 0.00 3.16
2388 2459 7.280876 GGTAAAAGATGTGCATGAGATCAACTA 59.719 37.037 0.00 0.00 0.00 2.24
2389 2460 7.692460 AAAAGATGTGCATGAGATCAACTAA 57.308 32.000 0.00 0.00 0.00 2.24
2390 2461 7.876936 AAAGATGTGCATGAGATCAACTAAT 57.123 32.000 0.00 0.00 0.00 1.73
2391 2462 8.969260 AAAGATGTGCATGAGATCAACTAATA 57.031 30.769 0.00 0.00 0.00 0.98
2392 2463 8.969260 AAGATGTGCATGAGATCAACTAATAA 57.031 30.769 0.00 0.00 0.00 1.40
2393 2464 9.570468 AAGATGTGCATGAGATCAACTAATAAT 57.430 29.630 0.00 0.00 0.00 1.28
2394 2465 9.000486 AGATGTGCATGAGATCAACTAATAATG 58.000 33.333 0.00 0.00 0.00 1.90
2395 2466 8.913487 ATGTGCATGAGATCAACTAATAATGA 57.087 30.769 0.00 0.00 0.00 2.57
2396 2467 8.735692 TGTGCATGAGATCAACTAATAATGAA 57.264 30.769 0.00 0.00 0.00 2.57
2397 2468 9.176460 TGTGCATGAGATCAACTAATAATGAAA 57.824 29.630 0.00 0.00 0.00 2.69
2415 2486 9.715121 ATAATGAAAACTTTTTCTCATGCATGT 57.285 25.926 25.43 2.03 45.14 3.21
2417 2488 8.752766 ATGAAAACTTTTTCTCATGCATGTAG 57.247 30.769 25.43 19.89 45.14 2.74
2418 2489 7.715657 TGAAAACTTTTTCTCATGCATGTAGT 58.284 30.769 25.43 15.94 45.14 2.73
2419 2490 7.648908 TGAAAACTTTTTCTCATGCATGTAGTG 59.351 33.333 25.43 14.20 45.14 2.74
2420 2491 5.633830 ACTTTTTCTCATGCATGTAGTGG 57.366 39.130 25.43 13.10 0.00 4.00
2421 2492 5.072741 ACTTTTTCTCATGCATGTAGTGGT 58.927 37.500 25.43 13.65 0.00 4.16
2422 2493 5.048504 ACTTTTTCTCATGCATGTAGTGGTG 60.049 40.000 25.43 14.38 0.00 4.17
2423 2494 2.696989 TCTCATGCATGTAGTGGTGG 57.303 50.000 25.43 7.67 0.00 4.61
2424 2495 1.210234 TCTCATGCATGTAGTGGTGGG 59.790 52.381 25.43 0.00 0.00 4.61
2425 2496 0.394216 TCATGCATGTAGTGGTGGGC 60.394 55.000 25.43 0.00 0.00 5.36
2426 2497 1.076777 ATGCATGTAGTGGTGGGCC 60.077 57.895 0.00 0.00 0.00 5.80
2427 2498 1.574526 ATGCATGTAGTGGTGGGCCT 61.575 55.000 4.53 0.00 35.27 5.19
2428 2499 1.000896 GCATGTAGTGGTGGGCCTT 60.001 57.895 4.53 0.00 35.27 4.35
2429 2500 0.611896 GCATGTAGTGGTGGGCCTTT 60.612 55.000 4.53 0.00 35.27 3.11
2430 2501 1.176527 CATGTAGTGGTGGGCCTTTG 58.823 55.000 4.53 0.00 35.27 2.77
2431 2502 1.072266 ATGTAGTGGTGGGCCTTTGA 58.928 50.000 4.53 0.00 35.27 2.69
2432 2503 1.072266 TGTAGTGGTGGGCCTTTGAT 58.928 50.000 4.53 0.00 35.27 2.57
2433 2504 1.271871 TGTAGTGGTGGGCCTTTGATG 60.272 52.381 4.53 0.00 35.27 3.07
2434 2505 1.004277 GTAGTGGTGGGCCTTTGATGA 59.996 52.381 4.53 0.00 35.27 2.92
2435 2506 0.038744 AGTGGTGGGCCTTTGATGAG 59.961 55.000 4.53 0.00 35.27 2.90
2436 2507 0.967380 GTGGTGGGCCTTTGATGAGG 60.967 60.000 4.53 0.00 39.93 3.86
2437 2508 1.384191 GGTGGGCCTTTGATGAGGT 59.616 57.895 4.53 0.00 39.11 3.85
2438 2509 0.967380 GGTGGGCCTTTGATGAGGTG 60.967 60.000 4.53 0.00 39.11 4.00
2439 2510 0.967380 GTGGGCCTTTGATGAGGTGG 60.967 60.000 4.53 0.00 39.11 4.61
2440 2511 2.054453 GGGCCTTTGATGAGGTGGC 61.054 63.158 0.84 0.00 42.56 5.01
2441 2512 1.304381 GGCCTTTGATGAGGTGGCA 60.304 57.895 0.00 0.00 44.85 4.92
2442 2513 0.685458 GGCCTTTGATGAGGTGGCAT 60.685 55.000 0.00 0.00 44.85 4.40
2443 2514 0.458669 GCCTTTGATGAGGTGGCATG 59.541 55.000 0.00 0.00 42.79 4.06
2444 2515 1.843368 CCTTTGATGAGGTGGCATGT 58.157 50.000 0.00 0.00 31.89 3.21
2445 2516 1.475280 CCTTTGATGAGGTGGCATGTG 59.525 52.381 0.00 0.00 31.89 3.21
2446 2517 2.165167 CTTTGATGAGGTGGCATGTGT 58.835 47.619 0.00 0.00 0.00 3.72
2447 2518 1.536940 TTGATGAGGTGGCATGTGTG 58.463 50.000 0.00 0.00 0.00 3.82
2465 2536 6.682423 TGTGTGCATGTTGAGATAAATAGG 57.318 37.500 0.00 0.00 0.00 2.57
2466 2537 6.413892 TGTGTGCATGTTGAGATAAATAGGA 58.586 36.000 0.00 0.00 0.00 2.94
2467 2538 7.056006 TGTGTGCATGTTGAGATAAATAGGAT 58.944 34.615 0.00 0.00 0.00 3.24
2468 2539 8.210265 TGTGTGCATGTTGAGATAAATAGGATA 58.790 33.333 0.00 0.00 0.00 2.59
2469 2540 8.715998 GTGTGCATGTTGAGATAAATAGGATAG 58.284 37.037 0.00 0.00 0.00 2.08
2470 2541 8.432013 TGTGCATGTTGAGATAAATAGGATAGT 58.568 33.333 0.00 0.00 0.00 2.12
2471 2542 8.715998 GTGCATGTTGAGATAAATAGGATAGTG 58.284 37.037 0.00 0.00 0.00 2.74
2472 2543 7.879677 TGCATGTTGAGATAAATAGGATAGTGG 59.120 37.037 0.00 0.00 0.00 4.00
2473 2544 7.335422 GCATGTTGAGATAAATAGGATAGTGGG 59.665 40.741 0.00 0.00 0.00 4.61
2474 2545 7.316393 TGTTGAGATAAATAGGATAGTGGGG 57.684 40.000 0.00 0.00 0.00 4.96
2475 2546 7.079700 TGTTGAGATAAATAGGATAGTGGGGA 58.920 38.462 0.00 0.00 0.00 4.81
2476 2547 7.739444 TGTTGAGATAAATAGGATAGTGGGGAT 59.261 37.037 0.00 0.00 0.00 3.85
2477 2548 7.979786 TGAGATAAATAGGATAGTGGGGATC 57.020 40.000 0.00 0.00 0.00 3.36
2478 2549 7.487338 TGAGATAAATAGGATAGTGGGGATCA 58.513 38.462 0.00 0.00 0.00 2.92
2479 2550 7.961431 TGAGATAAATAGGATAGTGGGGATCAA 59.039 37.037 0.00 0.00 0.00 2.57
2480 2551 8.152023 AGATAAATAGGATAGTGGGGATCAAC 57.848 38.462 0.00 0.00 0.00 3.18
2481 2552 7.964293 AGATAAATAGGATAGTGGGGATCAACT 59.036 37.037 0.00 0.00 0.00 3.16
2482 2553 6.848562 AAATAGGATAGTGGGGATCAACTT 57.151 37.500 0.00 0.00 0.00 2.66
2483 2554 6.441088 AATAGGATAGTGGGGATCAACTTC 57.559 41.667 0.00 0.00 0.00 3.01
2484 2555 4.014273 AGGATAGTGGGGATCAACTTCT 57.986 45.455 0.00 0.00 0.00 2.85
2485 2556 4.375313 AGGATAGTGGGGATCAACTTCTT 58.625 43.478 0.00 0.00 0.00 2.52
2486 2557 5.538877 AGGATAGTGGGGATCAACTTCTTA 58.461 41.667 0.00 0.00 0.00 2.10
2487 2558 6.153924 AGGATAGTGGGGATCAACTTCTTAT 58.846 40.000 0.00 0.00 0.00 1.73
2488 2559 6.043706 AGGATAGTGGGGATCAACTTCTTATG 59.956 42.308 0.00 0.00 0.00 1.90
2489 2560 6.183361 GGATAGTGGGGATCAACTTCTTATGT 60.183 42.308 0.00 0.00 0.00 2.29
2492 2563 7.931015 AGTGGGGATCAACTTCTTATGTATA 57.069 36.000 0.00 0.00 0.00 1.47
2495 2566 9.877178 GTGGGGATCAACTTCTTATGTATATAG 57.123 37.037 0.00 0.00 0.00 1.31
2607 2679 7.924947 GGTATTTTGGTGGTATACTAGAGACAC 59.075 40.741 2.25 1.26 0.00 3.67
2612 2684 6.359804 TGGTGGTATACTAGAGACACGTATT 58.640 40.000 2.25 0.00 0.00 1.89
2627 2699 9.107367 GAGACACGTATTGAGAAATTTTTCTTG 57.893 33.333 9.84 2.90 46.84 3.02
2628 2700 8.836413 AGACACGTATTGAGAAATTTTTCTTGA 58.164 29.630 9.84 0.59 46.84 3.02
2680 2752 5.776173 TTGCGGGATTCTAAAAACTCAAA 57.224 34.783 0.00 0.00 0.00 2.69
2687 2759 7.973944 CGGGATTCTAAAAACTCAAAAATAGGG 59.026 37.037 0.00 0.00 0.00 3.53
2704 2776 6.791867 AATAGGGAAAACAAAGGAATAGGC 57.208 37.500 0.00 0.00 0.00 3.93
2705 2777 3.441101 AGGGAAAACAAAGGAATAGGCC 58.559 45.455 0.00 0.00 0.00 5.19
2707 2779 3.195610 GGGAAAACAAAGGAATAGGCCAG 59.804 47.826 5.01 0.00 0.00 4.85
2846 2924 7.624360 TCAACCCACATGAAAATGTATAGTC 57.376 36.000 0.00 0.00 32.74 2.59
2927 3006 7.456902 TGAAAAGGAGGTCAAAGTAGGTAGTAT 59.543 37.037 0.00 0.00 0.00 2.12
2928 3007 6.793505 AAGGAGGTCAAAGTAGGTAGTATG 57.206 41.667 0.00 0.00 0.00 2.39
2960 3039 5.009210 TGTTATTCCTTTGAAACTGGGTTCG 59.991 40.000 0.00 0.00 33.32 3.95
3070 3149 7.897864 TCTTTCACTTTTACTTTGGACCAAAA 58.102 30.769 19.99 4.20 32.75 2.44
3142 3221 3.752747 TCACTTCAGACCGATACACGTTA 59.247 43.478 0.00 0.00 40.78 3.18
3152 3231 4.563976 ACCGATACACGTTATTTTTCCTCG 59.436 41.667 0.00 0.00 40.78 4.63
3399 3548 4.672409 CATGCACGTCTCTGTAATCTACA 58.328 43.478 0.00 0.00 37.13 2.74
3485 3634 4.676849 TGTGTATGTACGTAACGCTGTA 57.323 40.909 0.00 0.00 0.00 2.74
3585 3743 2.224305 GGCGCATCTGTTCCTAGGTATT 60.224 50.000 10.83 0.00 0.00 1.89
3619 3777 2.087462 CTCGTGTCACAGAGTGCCCA 62.087 60.000 13.41 0.00 32.98 5.36
3620 3778 1.665916 CGTGTCACAGAGTGCCCAG 60.666 63.158 3.42 0.00 32.98 4.45
3687 3845 0.906066 TCGATCGAATTGAACCCCCA 59.094 50.000 16.99 0.00 0.00 4.96
3714 3872 0.327924 ACTGCCCGATGGAATCAACA 59.672 50.000 0.00 0.00 45.97 3.33
3717 3875 2.016961 CCCGATGGAATCAACAGCG 58.983 57.895 0.00 0.00 45.97 5.18
3732 3890 2.750637 GCGAGACTGAGACGGGGA 60.751 66.667 0.00 0.00 0.00 4.81
3755 3914 3.140144 AGAAGAAATTGGGTGTGGGAGAA 59.860 43.478 0.00 0.00 0.00 2.87
3771 3930 1.336755 GAGAAATGTTGTTGCCGGTGT 59.663 47.619 1.90 0.00 0.00 4.16
3800 3959 1.066071 GGGGAGGAGACGAAAAGGAAG 60.066 57.143 0.00 0.00 0.00 3.46
3813 3972 2.256117 AAGGAAGTGTAAAGCAGCGT 57.744 45.000 0.00 0.00 0.00 5.07
3817 3976 1.727335 GAAGTGTAAAGCAGCGTCTCC 59.273 52.381 0.00 0.00 0.00 3.71
3845 4004 4.574828 GGAGCTCCTATTTGACGCATTTTA 59.425 41.667 26.25 0.00 0.00 1.52
3875 4034 2.026542 TCTGGATCTGCTGCTTGACAAT 60.027 45.455 0.00 0.00 0.00 2.71
3961 4120 1.586154 GGTCACAATGGGCAGGAACG 61.586 60.000 0.00 0.00 0.00 3.95
4015 4174 4.613265 TGTTACTACCTCCATAGTGGGA 57.387 45.455 0.00 0.00 38.32 4.37
4087 4246 7.047891 AGACTCATTGTTTCTTGAAGTGTGTA 58.952 34.615 0.00 0.00 0.00 2.90
4160 4319 7.403312 AATATGTGCCACATAAGCAAACTTA 57.597 32.000 20.57 0.00 43.50 2.24
4191 4350 6.827727 AGTGTGTGATGTTACTCCTAAGTTT 58.172 36.000 0.00 0.00 36.92 2.66
4212 4371 1.302949 GCCCATTGTGACCAGCCTA 59.697 57.895 0.00 0.00 0.00 3.93
4214 4373 1.755179 CCCATTGTGACCAGCCTAAG 58.245 55.000 0.00 0.00 0.00 2.18
4215 4374 1.281867 CCCATTGTGACCAGCCTAAGA 59.718 52.381 0.00 0.00 0.00 2.10
4216 4375 2.290896 CCCATTGTGACCAGCCTAAGAA 60.291 50.000 0.00 0.00 0.00 2.52
4218 5100 3.560025 CCATTGTGACCAGCCTAAGAACT 60.560 47.826 0.00 0.00 0.00 3.01
4221 5103 4.267349 TGTGACCAGCCTAAGAACTAAC 57.733 45.455 0.00 0.00 0.00 2.34
4225 5107 5.047519 GTGACCAGCCTAAGAACTAACTACA 60.048 44.000 0.00 0.00 0.00 2.74
4229 5111 5.817816 CCAGCCTAAGAACTAACTACAATGG 59.182 44.000 0.00 0.00 0.00 3.16
4230 5112 6.351881 CCAGCCTAAGAACTAACTACAATGGA 60.352 42.308 0.00 0.00 0.00 3.41
4238 5120 8.567285 AGAACTAACTACAATGGAAAATCTGG 57.433 34.615 0.00 0.00 0.00 3.86
4239 5121 7.611855 AGAACTAACTACAATGGAAAATCTGGG 59.388 37.037 0.00 0.00 0.00 4.45
4241 5123 4.046286 ACTACAATGGAAAATCTGGGCA 57.954 40.909 0.00 0.00 0.00 5.36
4242 5124 4.613437 ACTACAATGGAAAATCTGGGCAT 58.387 39.130 0.00 0.00 0.00 4.40
4245 5127 5.796424 ACAATGGAAAATCTGGGCATATC 57.204 39.130 0.00 0.00 0.00 1.63
4248 5130 3.836146 TGGAAAATCTGGGCATATCTGG 58.164 45.455 0.00 0.00 0.00 3.86
4250 5132 4.079269 TGGAAAATCTGGGCATATCTGGAA 60.079 41.667 0.00 0.00 0.00 3.53
4251 5133 4.895297 GGAAAATCTGGGCATATCTGGAAA 59.105 41.667 0.00 0.00 0.00 3.13
4278 5284 9.942850 AAAATTCAATATTTCCCTCGAAATTGT 57.057 25.926 3.61 0.00 44.62 2.71
4280 5286 7.695480 TTCAATATTTCCCTCGAAATTGTGA 57.305 32.000 3.61 5.47 44.62 3.58
4282 5288 7.761409 TCAATATTTCCCTCGAAATTGTGAAG 58.239 34.615 3.61 0.00 44.62 3.02
4283 5289 7.609918 TCAATATTTCCCTCGAAATTGTGAAGA 59.390 33.333 3.61 0.00 44.62 2.87
4288 5294 5.070001 TCCCTCGAAATTGTGAAGACATTT 58.930 37.500 0.00 0.00 30.13 2.32
4289 5295 5.048782 TCCCTCGAAATTGTGAAGACATTTG 60.049 40.000 0.00 0.00 30.13 2.32
4290 5296 5.278463 CCCTCGAAATTGTGAAGACATTTGT 60.278 40.000 0.00 0.00 30.13 2.83
4291 5297 6.072728 CCCTCGAAATTGTGAAGACATTTGTA 60.073 38.462 0.00 0.00 30.13 2.41
4292 5298 7.359595 CCTCGAAATTGTGAAGACATTTGTAA 58.640 34.615 0.00 0.00 30.13 2.41
4294 5300 9.232082 CTCGAAATTGTGAAGACATTTGTAAAA 57.768 29.630 0.00 0.00 30.13 1.52
4295 5301 9.574458 TCGAAATTGTGAAGACATTTGTAAAAA 57.426 25.926 0.00 0.00 30.13 1.94
4321 5327 5.503498 CGAGTAACGTTTGAAAATTGGACA 58.497 37.500 5.91 0.00 37.22 4.02
4322 5328 5.966503 CGAGTAACGTTTGAAAATTGGACAA 59.033 36.000 5.91 0.00 37.22 3.18
4325 5331 8.125728 AGTAACGTTTGAAAATTGGACAATTG 57.874 30.769 5.91 3.24 40.57 2.32
4326 5332 6.976636 AACGTTTGAAAATTGGACAATTGT 57.023 29.167 11.78 11.78 40.57 2.71
4327 5333 6.976636 ACGTTTGAAAATTGGACAATTGTT 57.023 29.167 13.36 7.65 40.57 2.83
4330 5336 7.118390 ACGTTTGAAAATTGGACAATTGTTTGA 59.882 29.630 13.36 1.93 40.57 2.69
4331 5337 7.959651 CGTTTGAAAATTGGACAATTGTTTGAA 59.040 29.630 13.36 6.45 40.57 2.69
4332 5338 9.786105 GTTTGAAAATTGGACAATTGTTTGAAT 57.214 25.926 13.36 8.44 40.57 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.815003 CACGCCATTCGCCAGATCA 60.815 57.895 0.00 0.00 43.23 2.92
246 247 1.728490 GGATTGCAGGCCATCCGTTC 61.728 60.000 5.01 0.00 37.47 3.95
299 300 3.319198 TCGTGTTCCAGGGAGGCC 61.319 66.667 0.00 0.00 37.29 5.19
303 304 1.189524 AATCCGTCGTGTTCCAGGGA 61.190 55.000 0.00 0.00 0.00 4.20
336 337 2.541178 CCTTCACGGTACTAGTCGATGC 60.541 54.545 10.62 0.00 0.00 3.91
344 345 0.813184 CCGAAGCCTTCACGGTACTA 59.187 55.000 5.14 0.00 41.47 1.82
368 369 2.743636 TGCCTAACTCTTCCTCGTTG 57.256 50.000 0.00 0.00 0.00 4.10
370 371 1.482593 CCATGCCTAACTCTTCCTCGT 59.517 52.381 0.00 0.00 0.00 4.18
380 381 0.947244 CGCCATCTTCCATGCCTAAC 59.053 55.000 0.00 0.00 0.00 2.34
383 384 2.194056 CCGCCATCTTCCATGCCT 59.806 61.111 0.00 0.00 0.00 4.75
401 402 2.035442 GCTCACGGGACTCAAAGCC 61.035 63.158 0.00 0.00 0.00 4.35
404 405 2.342279 CGGCTCACGGGACTCAAA 59.658 61.111 0.00 0.00 39.42 2.69
451 452 6.662986 TCAAAATGTTGCTCCGGTATCCGA 62.663 45.833 9.86 0.00 41.12 4.55
452 453 4.479224 TCAAAATGTTGCTCCGGTATCCG 61.479 47.826 0.00 0.85 39.60 4.18
458 459 0.527565 CCCTCAAAATGTTGCTCCGG 59.472 55.000 0.00 0.00 34.50 5.14
481 482 3.077556 CGTCTGGGGGCTAGCTGT 61.078 66.667 15.72 0.00 0.00 4.40
482 483 2.759973 TCGTCTGGGGGCTAGCTG 60.760 66.667 15.72 0.60 0.00 4.24
483 484 2.443016 CTCGTCTGGGGGCTAGCT 60.443 66.667 15.72 0.00 0.00 3.32
484 485 4.228567 GCTCGTCTGGGGGCTAGC 62.229 72.222 6.04 6.04 0.00 3.42
485 486 2.443016 AGCTCGTCTGGGGGCTAG 60.443 66.667 0.00 0.00 32.94 3.42
486 487 2.442272 GAGCTCGTCTGGGGGCTA 60.442 66.667 0.00 0.00 35.01 3.93
501 502 7.307632 CCAATGTGAAATCTAATCTAAGCGGAG 60.308 40.741 0.00 0.00 0.00 4.63
502 503 6.483307 CCAATGTGAAATCTAATCTAAGCGGA 59.517 38.462 0.00 0.00 0.00 5.54
503 504 6.483307 TCCAATGTGAAATCTAATCTAAGCGG 59.517 38.462 0.00 0.00 0.00 5.52
504 505 7.482654 TCCAATGTGAAATCTAATCTAAGCG 57.517 36.000 0.00 0.00 0.00 4.68
505 506 8.844244 ACATCCAATGTGAAATCTAATCTAAGC 58.156 33.333 0.00 0.00 43.01 3.09
591 592 8.200792 AGACAAGATAATGACTAATCACACCTC 58.799 37.037 0.00 0.00 37.79 3.85
607 608 0.459585 GACGCGCCCAGACAAGATAA 60.460 55.000 5.73 0.00 0.00 1.75
704 709 3.330853 CGCGCAATCGGCTACTCC 61.331 66.667 8.75 0.00 41.67 3.85
782 794 3.822996 CTCGCGATACGTTATCCTCATT 58.177 45.455 10.36 0.00 44.19 2.57
898 910 1.068121 GGGCCAATATACTCCAGCCT 58.932 55.000 4.39 0.00 40.32 4.58
936 948 3.798202 ACTCTGTCTGAAGAAAAGCGTT 58.202 40.909 0.00 0.00 0.00 4.84
1068 1084 2.986306 GACGACGGCGAAGGAGGAA 61.986 63.158 22.49 0.00 41.64 3.36
1125 1141 1.509463 GCTGATGACGGACGTACCA 59.491 57.895 0.00 0.00 38.90 3.25
1183 1204 1.278699 TCACCAGAGCATGCATGTGTA 59.721 47.619 26.79 8.28 0.00 2.90
1226 1253 3.594603 TTTCCTCGAATCAGACCACTC 57.405 47.619 0.00 0.00 0.00 3.51
1268 1295 3.240134 GACTGTCAAGCCGCCTCCA 62.240 63.158 2.24 0.00 0.00 3.86
1313 1340 2.038837 GTACACGCCCTTCTTGCCC 61.039 63.158 0.00 0.00 0.00 5.36
1337 1364 2.468532 GCGCCGTACTTGTCAACG 59.531 61.111 0.00 0.00 38.80 4.10
1386 1413 8.562892 GGTCTACCAAACAATATCTCATTCATG 58.437 37.037 0.00 0.00 35.64 3.07
1395 1422 5.357032 CCACCAAGGTCTACCAAACAATATC 59.643 44.000 1.26 0.00 38.89 1.63
1418 1445 1.017387 GACCAATCGATGCCAGTTCC 58.983 55.000 0.00 0.00 0.00 3.62
1419 1446 1.398390 GTGACCAATCGATGCCAGTTC 59.602 52.381 0.00 0.00 0.00 3.01
1449 1476 5.643777 ACGTGAGTAACTGTTAGGTACGTAT 59.356 40.000 22.90 9.32 43.03 3.06
1643 1670 0.680921 GGGTACAGGTGTGCATGCAT 60.681 55.000 25.64 9.23 32.02 3.96
1644 1671 1.303236 GGGTACAGGTGTGCATGCA 60.303 57.895 18.46 18.46 32.02 3.96
1645 1672 2.398554 CGGGTACAGGTGTGCATGC 61.399 63.158 11.82 11.82 32.02 4.06
1646 1673 0.107703 ATCGGGTACAGGTGTGCATG 60.108 55.000 0.00 0.00 32.02 4.06
1671 1698 7.601508 GGTAACAACTTGTACAGTAAGTGCTAT 59.398 37.037 0.00 0.00 38.32 2.97
1859 1894 0.847373 TAACTGTGGTTCTGCCCCAA 59.153 50.000 0.00 0.00 36.92 4.12
1875 1910 8.671384 TGCCAATTACCAGTTGAGTATATAAC 57.329 34.615 0.00 0.00 0.00 1.89
1915 1950 5.467705 ACGTAAACAAGCACCTCTAACTAG 58.532 41.667 0.00 0.00 0.00 2.57
1936 1971 7.252965 TCTCTCTCATGAATCAACTACTACG 57.747 40.000 0.00 0.00 0.00 3.51
2069 2140 5.824904 AAGCGTTTGAATCATGAGCTTAT 57.175 34.783 12.80 0.00 41.00 1.73
2076 2147 6.607689 TGGTTTAGTAAGCGTTTGAATCATG 58.392 36.000 0.00 0.00 34.50 3.07
2098 2169 9.205719 GTTATCATAGATATGCATGCTCTATGG 57.794 37.037 33.29 23.14 44.54 2.74
2123 2194 0.037605 CGCACGGGGTTTTCTCTAGT 60.038 55.000 0.00 0.00 0.00 2.57
2124 2195 0.037605 ACGCACGGGGTTTTCTCTAG 60.038 55.000 0.00 0.00 0.00 2.43
2125 2196 0.393820 AACGCACGGGGTTTTCTCTA 59.606 50.000 0.00 0.00 35.18 2.43
2126 2197 1.147600 AACGCACGGGGTTTTCTCT 59.852 52.632 0.00 0.00 35.18 3.10
2127 2198 1.281656 CAACGCACGGGGTTTTCTC 59.718 57.895 4.08 0.00 36.59 2.87
2128 2199 2.841160 GCAACGCACGGGGTTTTCT 61.841 57.895 4.08 0.00 36.59 2.52
2129 2200 2.354188 GCAACGCACGGGGTTTTC 60.354 61.111 4.08 0.00 36.59 2.29
2130 2201 2.831284 AGCAACGCACGGGGTTTT 60.831 55.556 4.08 0.00 36.59 2.43
2131 2202 3.591835 CAGCAACGCACGGGGTTT 61.592 61.111 4.08 0.00 36.59 3.27
2138 2209 3.267597 AATTCCCGCAGCAACGCAC 62.268 57.895 0.00 0.00 0.00 5.34
2139 2210 2.983030 AATTCCCGCAGCAACGCA 60.983 55.556 0.00 0.00 0.00 5.24
2140 2211 2.270297 ATCAATTCCCGCAGCAACGC 62.270 55.000 0.00 0.00 0.00 4.84
2141 2212 0.171007 AATCAATTCCCGCAGCAACG 59.829 50.000 0.00 0.00 0.00 4.10
2142 2213 1.632422 CAATCAATTCCCGCAGCAAC 58.368 50.000 0.00 0.00 0.00 4.17
2143 2214 0.108709 GCAATCAATTCCCGCAGCAA 60.109 50.000 0.00 0.00 0.00 3.91
2144 2215 1.249469 TGCAATCAATTCCCGCAGCA 61.249 50.000 0.00 0.00 0.00 4.41
2145 2216 0.108709 TTGCAATCAATTCCCGCAGC 60.109 50.000 0.00 0.00 33.48 5.25
2146 2217 2.589798 ATTGCAATCAATTCCCGCAG 57.410 45.000 5.99 0.00 39.78 5.18
2147 2218 5.981088 ATATATTGCAATCAATTCCCGCA 57.019 34.783 16.86 0.00 42.51 5.69
2148 2219 6.033831 CGAAATATATTGCAATCAATTCCCGC 59.966 38.462 16.86 6.87 42.51 6.13
2149 2220 6.527722 CCGAAATATATTGCAATCAATTCCCG 59.472 38.462 16.86 19.19 42.51 5.14
2150 2221 7.329226 CACCGAAATATATTGCAATCAATTCCC 59.671 37.037 16.86 10.73 42.51 3.97
2151 2222 8.081633 TCACCGAAATATATTGCAATCAATTCC 58.918 33.333 16.86 4.13 42.51 3.01
2152 2223 9.630098 ATCACCGAAATATATTGCAATCAATTC 57.370 29.630 16.86 14.43 42.51 2.17
2153 2224 9.985730 AATCACCGAAATATATTGCAATCAATT 57.014 25.926 16.86 13.53 42.51 2.32
2154 2225 9.985730 AAATCACCGAAATATATTGCAATCAAT 57.014 25.926 16.86 7.59 44.52 2.57
2155 2226 9.247126 CAAATCACCGAAATATATTGCAATCAA 57.753 29.630 16.86 5.61 36.51 2.57
2156 2227 8.628280 TCAAATCACCGAAATATATTGCAATCA 58.372 29.630 16.86 5.61 0.00 2.57
2157 2228 9.630098 ATCAAATCACCGAAATATATTGCAATC 57.370 29.630 16.86 0.00 0.00 2.67
2158 2229 9.985730 AATCAAATCACCGAAATATATTGCAAT 57.014 25.926 17.56 17.56 0.00 3.56
2159 2230 9.247126 CAATCAAATCACCGAAATATATTGCAA 57.753 29.630 0.00 0.00 0.00 4.08
2160 2231 8.412456 ACAATCAAATCACCGAAATATATTGCA 58.588 29.630 4.29 0.00 0.00 4.08
2161 2232 8.801715 ACAATCAAATCACCGAAATATATTGC 57.198 30.769 0.00 0.00 0.00 3.56
2167 2238 8.128582 GCTTCATACAATCAAATCACCGAAATA 58.871 33.333 0.00 0.00 0.00 1.40
2168 2239 6.974622 GCTTCATACAATCAAATCACCGAAAT 59.025 34.615 0.00 0.00 0.00 2.17
2169 2240 6.150976 AGCTTCATACAATCAAATCACCGAAA 59.849 34.615 0.00 0.00 0.00 3.46
2170 2241 5.647658 AGCTTCATACAATCAAATCACCGAA 59.352 36.000 0.00 0.00 0.00 4.30
2171 2242 5.185454 AGCTTCATACAATCAAATCACCGA 58.815 37.500 0.00 0.00 0.00 4.69
2172 2243 5.490139 AGCTTCATACAATCAAATCACCG 57.510 39.130 0.00 0.00 0.00 4.94
2173 2244 6.127647 TGGAAGCTTCATACAATCAAATCACC 60.128 38.462 27.02 5.43 0.00 4.02
2174 2245 6.855836 TGGAAGCTTCATACAATCAAATCAC 58.144 36.000 27.02 5.17 0.00 3.06
2175 2246 7.339976 TGATGGAAGCTTCATACAATCAAATCA 59.660 33.333 27.02 12.26 0.00 2.57
2176 2247 7.709947 TGATGGAAGCTTCATACAATCAAATC 58.290 34.615 27.02 10.11 0.00 2.17
2177 2248 7.649533 TGATGGAAGCTTCATACAATCAAAT 57.350 32.000 27.02 1.08 0.00 2.32
2178 2249 7.649533 ATGATGGAAGCTTCATACAATCAAA 57.350 32.000 27.02 7.99 30.93 2.69
2179 2250 7.339976 TCAATGATGGAAGCTTCATACAATCAA 59.660 33.333 27.02 10.17 32.40 2.57
2180 2251 6.829811 TCAATGATGGAAGCTTCATACAATCA 59.170 34.615 27.02 23.02 32.40 2.57
2181 2252 7.268199 TCAATGATGGAAGCTTCATACAATC 57.732 36.000 27.02 19.09 32.40 2.67
2182 2253 7.649533 TTCAATGATGGAAGCTTCATACAAT 57.350 32.000 27.02 13.26 32.40 2.71
2183 2254 7.649533 ATTCAATGATGGAAGCTTCATACAA 57.350 32.000 27.02 9.36 32.40 2.41
2184 2255 7.649533 AATTCAATGATGGAAGCTTCATACA 57.350 32.000 27.02 21.05 32.40 2.29
2268 2339 8.988934 GCCACGTATATTCAAAATATCTTCTGA 58.011 33.333 0.00 0.00 0.00 3.27
2269 2340 8.773645 TGCCACGTATATTCAAAATATCTTCTG 58.226 33.333 0.00 0.00 0.00 3.02
2270 2341 8.902540 TGCCACGTATATTCAAAATATCTTCT 57.097 30.769 0.00 0.00 0.00 2.85
2274 2345 9.472995 CGTTATGCCACGTATATTCAAAATATC 57.527 33.333 0.00 0.00 35.34 1.63
2288 2359 5.007921 AAGTTTTCTTTACGTTATGCCACGT 59.992 36.000 10.26 10.26 41.97 4.49
2289 2360 5.025986 AGTTTTCTTTACGTTATGCCACG 57.974 39.130 0.00 0.00 46.04 4.94
2290 2361 6.665465 AGAAGTTTTCTTTACGTTATGCCAC 58.335 36.000 0.00 0.00 40.61 5.01
2291 2362 6.870971 AGAAGTTTTCTTTACGTTATGCCA 57.129 33.333 0.00 0.00 40.61 4.92
2306 2377 9.199982 CACTCAATATGCATGAAAAGAAGTTTT 57.800 29.630 10.16 0.00 38.65 2.43
2307 2378 7.816031 CCACTCAATATGCATGAAAAGAAGTTT 59.184 33.333 10.16 0.00 0.00 2.66
2308 2379 7.177216 TCCACTCAATATGCATGAAAAGAAGTT 59.823 33.333 10.16 0.00 0.00 2.66
2309 2380 6.660521 TCCACTCAATATGCATGAAAAGAAGT 59.339 34.615 10.16 1.03 0.00 3.01
2310 2381 6.971184 GTCCACTCAATATGCATGAAAAGAAG 59.029 38.462 10.16 0.40 0.00 2.85
2311 2382 6.127647 GGTCCACTCAATATGCATGAAAAGAA 60.128 38.462 10.16 0.00 0.00 2.52
2312 2383 5.357878 GGTCCACTCAATATGCATGAAAAGA 59.642 40.000 10.16 0.00 0.00 2.52
2313 2384 5.359009 AGGTCCACTCAATATGCATGAAAAG 59.641 40.000 10.16 4.52 0.00 2.27
2314 2385 5.263599 AGGTCCACTCAATATGCATGAAAA 58.736 37.500 10.16 0.00 0.00 2.29
2315 2386 4.858850 AGGTCCACTCAATATGCATGAAA 58.141 39.130 10.16 0.00 0.00 2.69
2316 2387 4.508551 AGGTCCACTCAATATGCATGAA 57.491 40.909 10.16 0.00 0.00 2.57
2317 2388 4.508551 AAGGTCCACTCAATATGCATGA 57.491 40.909 10.16 0.00 0.00 3.07
2318 2389 4.202080 CCAAAGGTCCACTCAATATGCATG 60.202 45.833 10.16 0.00 0.00 4.06
2319 2390 3.956199 CCAAAGGTCCACTCAATATGCAT 59.044 43.478 3.79 3.79 0.00 3.96
2320 2391 3.245229 ACCAAAGGTCCACTCAATATGCA 60.245 43.478 0.00 0.00 0.00 3.96
2321 2392 3.129287 CACCAAAGGTCCACTCAATATGC 59.871 47.826 0.00 0.00 31.02 3.14
2322 2393 4.156556 CACACCAAAGGTCCACTCAATATG 59.843 45.833 0.00 0.00 31.02 1.78
2323 2394 4.335416 CACACCAAAGGTCCACTCAATAT 58.665 43.478 0.00 0.00 31.02 1.28
2324 2395 3.497763 CCACACCAAAGGTCCACTCAATA 60.498 47.826 0.00 0.00 31.02 1.90
2325 2396 2.586425 CACACCAAAGGTCCACTCAAT 58.414 47.619 0.00 0.00 31.02 2.57
2326 2397 1.409521 CCACACCAAAGGTCCACTCAA 60.410 52.381 0.00 0.00 31.02 3.02
2327 2398 0.182537 CCACACCAAAGGTCCACTCA 59.817 55.000 0.00 0.00 31.02 3.41
2328 2399 0.182775 ACCACACCAAAGGTCCACTC 59.817 55.000 0.00 0.00 31.02 3.51
2329 2400 0.106719 CACCACACCAAAGGTCCACT 60.107 55.000 0.00 0.00 35.52 4.00
2330 2401 0.106918 TCACCACACCAAAGGTCCAC 60.107 55.000 0.00 0.00 35.52 4.02
2331 2402 0.106918 GTCACCACACCAAAGGTCCA 60.107 55.000 0.00 0.00 35.52 4.02
2332 2403 0.106918 TGTCACCACACCAAAGGTCC 60.107 55.000 0.00 0.00 35.52 4.46
2333 2404 1.981256 ATGTCACCACACCAAAGGTC 58.019 50.000 0.00 0.00 35.52 3.85
2334 2405 3.181434 ACATATGTCACCACACCAAAGGT 60.181 43.478 1.41 0.00 39.10 3.50
2335 2406 3.191162 CACATATGTCACCACACCAAAGG 59.809 47.826 5.07 0.00 34.48 3.11
2336 2407 4.071423 TCACATATGTCACCACACCAAAG 58.929 43.478 5.07 0.00 34.48 2.77
2337 2408 4.092116 TCACATATGTCACCACACCAAA 57.908 40.909 5.07 0.00 34.48 3.28
2338 2409 3.778954 TCACATATGTCACCACACCAA 57.221 42.857 5.07 0.00 34.48 3.67
2339 2410 3.608796 CATCACATATGTCACCACACCA 58.391 45.455 5.07 0.00 34.48 4.17
2340 2411 2.945008 CCATCACATATGTCACCACACC 59.055 50.000 5.07 0.00 34.48 4.16
2341 2412 2.945008 CCCATCACATATGTCACCACAC 59.055 50.000 5.07 0.00 34.48 3.82
2342 2413 2.092484 CCCCATCACATATGTCACCACA 60.092 50.000 5.07 0.00 36.78 4.17
2343 2414 2.092429 ACCCCATCACATATGTCACCAC 60.092 50.000 5.07 0.00 0.00 4.16
2344 2415 2.204463 ACCCCATCACATATGTCACCA 58.796 47.619 5.07 0.00 0.00 4.17
2345 2416 4.431416 TTACCCCATCACATATGTCACC 57.569 45.455 5.07 0.00 0.00 4.02
2346 2417 6.119536 TCTTTTACCCCATCACATATGTCAC 58.880 40.000 5.07 0.00 0.00 3.67
2347 2418 6.320434 TCTTTTACCCCATCACATATGTCA 57.680 37.500 5.07 0.00 0.00 3.58
2348 2419 6.772716 ACATCTTTTACCCCATCACATATGTC 59.227 38.462 5.07 0.00 0.00 3.06
2349 2420 6.547141 CACATCTTTTACCCCATCACATATGT 59.453 38.462 1.41 1.41 0.00 2.29
2350 2421 6.515531 GCACATCTTTTACCCCATCACATATG 60.516 42.308 0.00 0.00 0.00 1.78
2351 2422 5.536161 GCACATCTTTTACCCCATCACATAT 59.464 40.000 0.00 0.00 0.00 1.78
2352 2423 4.887071 GCACATCTTTTACCCCATCACATA 59.113 41.667 0.00 0.00 0.00 2.29
2353 2424 3.701040 GCACATCTTTTACCCCATCACAT 59.299 43.478 0.00 0.00 0.00 3.21
2354 2425 3.088532 GCACATCTTTTACCCCATCACA 58.911 45.455 0.00 0.00 0.00 3.58
2355 2426 3.088532 TGCACATCTTTTACCCCATCAC 58.911 45.455 0.00 0.00 0.00 3.06
2356 2427 3.448093 TGCACATCTTTTACCCCATCA 57.552 42.857 0.00 0.00 0.00 3.07
2357 2428 3.953612 TCATGCACATCTTTTACCCCATC 59.046 43.478 0.00 0.00 0.00 3.51
2358 2429 3.956199 CTCATGCACATCTTTTACCCCAT 59.044 43.478 0.00 0.00 0.00 4.00
2359 2430 3.010027 TCTCATGCACATCTTTTACCCCA 59.990 43.478 0.00 0.00 0.00 4.96
2360 2431 3.620488 TCTCATGCACATCTTTTACCCC 58.380 45.455 0.00 0.00 0.00 4.95
2361 2432 4.883585 TGATCTCATGCACATCTTTTACCC 59.116 41.667 0.00 0.00 0.00 3.69
2362 2433 6.094603 AGTTGATCTCATGCACATCTTTTACC 59.905 38.462 0.00 0.00 0.00 2.85
2363 2434 7.081526 AGTTGATCTCATGCACATCTTTTAC 57.918 36.000 0.00 0.00 0.00 2.01
2364 2435 8.791327 TTAGTTGATCTCATGCACATCTTTTA 57.209 30.769 0.00 0.00 0.00 1.52
2365 2436 7.692460 TTAGTTGATCTCATGCACATCTTTT 57.308 32.000 0.00 0.00 0.00 2.27
2366 2437 7.876936 ATTAGTTGATCTCATGCACATCTTT 57.123 32.000 0.00 0.00 0.00 2.52
2367 2438 8.969260 TTATTAGTTGATCTCATGCACATCTT 57.031 30.769 0.00 0.00 0.00 2.40
2368 2439 9.000486 CATTATTAGTTGATCTCATGCACATCT 58.000 33.333 0.00 0.00 0.00 2.90
2369 2440 8.996271 TCATTATTAGTTGATCTCATGCACATC 58.004 33.333 0.00 0.00 0.00 3.06
2370 2441 8.913487 TCATTATTAGTTGATCTCATGCACAT 57.087 30.769 0.00 0.00 0.00 3.21
2371 2442 8.735692 TTCATTATTAGTTGATCTCATGCACA 57.264 30.769 0.00 0.00 0.00 4.57
2389 2460 9.715121 ACATGCATGAGAAAAAGTTTTCATTAT 57.285 25.926 32.75 0.22 46.81 1.28
2391 2462 9.199982 CTACATGCATGAGAAAAAGTTTTCATT 57.800 29.630 32.75 6.71 46.81 2.57
2392 2463 8.362639 ACTACATGCATGAGAAAAAGTTTTCAT 58.637 29.630 32.75 7.09 46.81 2.57
2393 2464 7.648908 CACTACATGCATGAGAAAAAGTTTTCA 59.351 33.333 32.75 0.00 46.81 2.69
2394 2465 7.115378 CCACTACATGCATGAGAAAAAGTTTTC 59.885 37.037 32.75 8.21 45.22 2.29
2395 2466 6.925165 CCACTACATGCATGAGAAAAAGTTTT 59.075 34.615 32.75 8.41 0.00 2.43
2396 2467 6.040842 ACCACTACATGCATGAGAAAAAGTTT 59.959 34.615 32.75 8.94 0.00 2.66
2397 2468 5.536161 ACCACTACATGCATGAGAAAAAGTT 59.464 36.000 32.75 9.69 0.00 2.66
2398 2469 5.048504 CACCACTACATGCATGAGAAAAAGT 60.049 40.000 32.75 19.62 0.00 2.66
2399 2470 5.396484 CACCACTACATGCATGAGAAAAAG 58.604 41.667 32.75 19.06 0.00 2.27
2400 2471 4.218200 CCACCACTACATGCATGAGAAAAA 59.782 41.667 32.75 9.54 0.00 1.94
2401 2472 3.758023 CCACCACTACATGCATGAGAAAA 59.242 43.478 32.75 11.19 0.00 2.29
2402 2473 3.346315 CCACCACTACATGCATGAGAAA 58.654 45.455 32.75 13.52 0.00 2.52
2403 2474 2.356022 CCCACCACTACATGCATGAGAA 60.356 50.000 32.75 15.89 0.00 2.87
2404 2475 1.210234 CCCACCACTACATGCATGAGA 59.790 52.381 32.75 18.18 0.00 3.27
2405 2476 1.671979 CCCACCACTACATGCATGAG 58.328 55.000 32.75 24.46 0.00 2.90
2406 2477 0.394216 GCCCACCACTACATGCATGA 60.394 55.000 32.75 15.12 0.00 3.07
2407 2478 1.386525 GGCCCACCACTACATGCATG 61.387 60.000 25.09 25.09 35.26 4.06
2408 2479 1.076777 GGCCCACCACTACATGCAT 60.077 57.895 0.00 0.00 35.26 3.96
2409 2480 1.788518 AAGGCCCACCACTACATGCA 61.789 55.000 0.00 0.00 39.06 3.96
2410 2481 0.611896 AAAGGCCCACCACTACATGC 60.612 55.000 0.00 0.00 39.06 4.06
2411 2482 1.176527 CAAAGGCCCACCACTACATG 58.823 55.000 0.00 0.00 39.06 3.21
2412 2483 1.072266 TCAAAGGCCCACCACTACAT 58.928 50.000 0.00 0.00 39.06 2.29
2413 2484 1.072266 ATCAAAGGCCCACCACTACA 58.928 50.000 0.00 0.00 39.06 2.74
2414 2485 1.004277 TCATCAAAGGCCCACCACTAC 59.996 52.381 0.00 0.00 39.06 2.73
2415 2486 1.281867 CTCATCAAAGGCCCACCACTA 59.718 52.381 0.00 0.00 39.06 2.74
2416 2487 0.038744 CTCATCAAAGGCCCACCACT 59.961 55.000 0.00 0.00 39.06 4.00
2417 2488 0.967380 CCTCATCAAAGGCCCACCAC 60.967 60.000 0.00 0.00 39.06 4.16
2418 2489 1.383799 CCTCATCAAAGGCCCACCA 59.616 57.895 0.00 0.00 39.06 4.17
2419 2490 0.967380 CACCTCATCAAAGGCCCACC 60.967 60.000 0.00 0.00 40.34 4.61
2420 2491 0.967380 CCACCTCATCAAAGGCCCAC 60.967 60.000 0.00 0.00 40.34 4.61
2421 2492 1.383799 CCACCTCATCAAAGGCCCA 59.616 57.895 0.00 0.00 40.34 5.36
2422 2493 2.054453 GCCACCTCATCAAAGGCCC 61.054 63.158 0.00 0.00 40.34 5.80
2423 2494 0.685458 ATGCCACCTCATCAAAGGCC 60.685 55.000 0.00 0.00 44.60 5.19
2424 2495 0.458669 CATGCCACCTCATCAAAGGC 59.541 55.000 0.00 0.00 45.41 4.35
2425 2496 1.475280 CACATGCCACCTCATCAAAGG 59.525 52.381 0.00 0.00 42.55 3.11
2426 2497 2.094906 CACACATGCCACCTCATCAAAG 60.095 50.000 0.00 0.00 0.00 2.77
2427 2498 1.887854 CACACATGCCACCTCATCAAA 59.112 47.619 0.00 0.00 0.00 2.69
2428 2499 1.536940 CACACATGCCACCTCATCAA 58.463 50.000 0.00 0.00 0.00 2.57
2429 2500 0.961857 GCACACATGCCACCTCATCA 60.962 55.000 0.00 0.00 46.97 3.07
2430 2501 1.805254 GCACACATGCCACCTCATC 59.195 57.895 0.00 0.00 46.97 2.92
2431 2502 4.007457 GCACACATGCCACCTCAT 57.993 55.556 0.00 0.00 46.97 2.90
2441 2512 7.056006 TCCTATTTATCTCAACATGCACACAT 58.944 34.615 0.00 0.00 36.79 3.21
2442 2513 6.413892 TCCTATTTATCTCAACATGCACACA 58.586 36.000 0.00 0.00 0.00 3.72
2443 2514 6.925610 TCCTATTTATCTCAACATGCACAC 57.074 37.500 0.00 0.00 0.00 3.82
2444 2515 8.432013 ACTATCCTATTTATCTCAACATGCACA 58.568 33.333 0.00 0.00 0.00 4.57
2445 2516 8.715998 CACTATCCTATTTATCTCAACATGCAC 58.284 37.037 0.00 0.00 0.00 4.57
2446 2517 7.879677 CCACTATCCTATTTATCTCAACATGCA 59.120 37.037 0.00 0.00 0.00 3.96
2447 2518 7.335422 CCCACTATCCTATTTATCTCAACATGC 59.665 40.741 0.00 0.00 0.00 4.06
2448 2519 7.826252 CCCCACTATCCTATTTATCTCAACATG 59.174 40.741 0.00 0.00 0.00 3.21
2449 2520 7.739444 TCCCCACTATCCTATTTATCTCAACAT 59.261 37.037 0.00 0.00 0.00 2.71
2450 2521 7.079700 TCCCCACTATCCTATTTATCTCAACA 58.920 38.462 0.00 0.00 0.00 3.33
2451 2522 7.554959 TCCCCACTATCCTATTTATCTCAAC 57.445 40.000 0.00 0.00 0.00 3.18
2452 2523 7.961431 TGATCCCCACTATCCTATTTATCTCAA 59.039 37.037 0.00 0.00 0.00 3.02
2453 2524 7.487338 TGATCCCCACTATCCTATTTATCTCA 58.513 38.462 0.00 0.00 0.00 3.27
2454 2525 7.979786 TGATCCCCACTATCCTATTTATCTC 57.020 40.000 0.00 0.00 0.00 2.75
2455 2526 7.964293 AGTTGATCCCCACTATCCTATTTATCT 59.036 37.037 0.00 0.00 0.00 1.98
2456 2527 8.152023 AGTTGATCCCCACTATCCTATTTATC 57.848 38.462 0.00 0.00 0.00 1.75
2457 2528 8.525729 AAGTTGATCCCCACTATCCTATTTAT 57.474 34.615 0.00 0.00 0.00 1.40
2458 2529 7.794683 AGAAGTTGATCCCCACTATCCTATTTA 59.205 37.037 0.00 0.00 0.00 1.40
2459 2530 6.621514 AGAAGTTGATCCCCACTATCCTATTT 59.378 38.462 0.00 0.00 0.00 1.40
2460 2531 6.153924 AGAAGTTGATCCCCACTATCCTATT 58.846 40.000 0.00 0.00 0.00 1.73
2461 2532 5.731924 AGAAGTTGATCCCCACTATCCTAT 58.268 41.667 0.00 0.00 0.00 2.57
2462 2533 5.157770 AGAAGTTGATCCCCACTATCCTA 57.842 43.478 0.00 0.00 0.00 2.94
2463 2534 4.014273 AGAAGTTGATCCCCACTATCCT 57.986 45.455 0.00 0.00 0.00 3.24
2464 2535 4.779993 AAGAAGTTGATCCCCACTATCC 57.220 45.455 0.00 0.00 0.00 2.59
2465 2536 6.831976 ACATAAGAAGTTGATCCCCACTATC 58.168 40.000 0.00 0.00 0.00 2.08
2466 2537 6.831664 ACATAAGAAGTTGATCCCCACTAT 57.168 37.500 0.00 0.00 0.00 2.12
2467 2538 7.931015 ATACATAAGAAGTTGATCCCCACTA 57.069 36.000 0.00 0.00 0.00 2.74
2468 2539 6.831664 ATACATAAGAAGTTGATCCCCACT 57.168 37.500 0.00 0.00 0.00 4.00
2469 2540 9.877178 CTATATACATAAGAAGTTGATCCCCAC 57.123 37.037 0.00 0.00 0.00 4.61
2470 2541 9.046846 CCTATATACATAAGAAGTTGATCCCCA 57.953 37.037 0.00 0.00 0.00 4.96
2471 2542 9.268282 TCCTATATACATAAGAAGTTGATCCCC 57.732 37.037 0.00 0.00 0.00 4.81
2479 2550 9.298250 ACGTGTCATCCTATATACATAAGAAGT 57.702 33.333 0.00 0.00 0.00 3.01
2482 2553 9.729281 TGTACGTGTCATCCTATATACATAAGA 57.271 33.333 0.00 0.00 0.00 2.10
2486 2557 9.020731 TGATTGTACGTGTCATCCTATATACAT 57.979 33.333 0.00 0.00 0.00 2.29
2487 2558 8.398878 TGATTGTACGTGTCATCCTATATACA 57.601 34.615 0.00 0.00 0.00 2.29
2488 2559 9.856488 ATTGATTGTACGTGTCATCCTATATAC 57.144 33.333 0.00 0.00 0.00 1.47
2489 2560 9.855021 CATTGATTGTACGTGTCATCCTATATA 57.145 33.333 0.00 0.00 0.00 0.86
2492 2563 5.466728 GCATTGATTGTACGTGTCATCCTAT 59.533 40.000 0.00 0.00 0.00 2.57
2495 2566 3.373748 TGCATTGATTGTACGTGTCATCC 59.626 43.478 0.00 0.00 0.00 3.51
2503 2574 6.291067 ACTATCACATGCATTGATTGTACG 57.709 37.500 23.31 13.71 37.57 3.67
2552 2623 8.521176 CCATCCGTTACTTATGCTTACTAGTAT 58.479 37.037 2.79 0.00 0.00 2.12
2553 2624 7.720957 TCCATCCGTTACTTATGCTTACTAGTA 59.279 37.037 0.00 0.00 0.00 1.82
2554 2625 6.548622 TCCATCCGTTACTTATGCTTACTAGT 59.451 38.462 0.00 0.00 0.00 2.57
2555 2626 6.978338 TCCATCCGTTACTTATGCTTACTAG 58.022 40.000 0.00 0.00 0.00 2.57
2607 2679 9.831737 ATCACTCAAGAAAAATTTCTCAATACG 57.168 29.630 8.74 0.00 46.22 3.06
2622 2694 8.467598 GCCTATATACGGATAATCACTCAAGAA 58.532 37.037 0.00 0.00 0.00 2.52
2625 2697 7.068348 GGAGCCTATATACGGATAATCACTCAA 59.932 40.741 11.15 0.00 0.00 3.02
2627 2699 6.773685 AGGAGCCTATATACGGATAATCACTC 59.226 42.308 0.00 0.00 0.00 3.51
2628 2700 6.674573 AGGAGCCTATATACGGATAATCACT 58.325 40.000 0.00 0.00 0.00 3.41
2636 2708 3.853207 ACCAAAGGAGCCTATATACGGA 58.147 45.455 0.00 0.00 0.00 4.69
2680 2752 6.156256 GGCCTATTCCTTTGTTTTCCCTATTT 59.844 38.462 0.00 0.00 0.00 1.40
2687 2759 5.722021 TTCTGGCCTATTCCTTTGTTTTC 57.278 39.130 3.32 0.00 0.00 2.29
2756 2828 7.451255 TCAATTCCTATGAACCAAACACTCAAT 59.549 33.333 0.00 0.00 32.13 2.57
2790 2865 9.927668 ATTTGACCATGTTTATTAGGTTTCTTG 57.072 29.630 0.00 0.00 33.77 3.02
2822 2897 7.171653 TGACTATACATTTTCATGTGGGTTGA 58.828 34.615 0.00 0.00 43.92 3.18
2846 2924 8.627208 AACCTTAGTGGCATGATAATATTCTG 57.373 34.615 0.00 0.00 40.22 3.02
2927 3006 7.505585 AGTTTCAAAGGAATAACACAGGAATCA 59.494 33.333 0.00 0.00 31.93 2.57
2928 3007 7.809806 CAGTTTCAAAGGAATAACACAGGAATC 59.190 37.037 0.00 0.00 31.93 2.52
3063 3142 4.022413 ACTTCTTAGGGCTCTTTTGGTC 57.978 45.455 0.00 0.00 0.00 4.02
3152 3231 9.617975 CACTTCTAAATCATCTTCTTTTTCCAC 57.382 33.333 0.00 0.00 0.00 4.02
3183 3332 6.042638 TGGTTTTGTTGGAGAATTTGAACA 57.957 33.333 0.00 0.00 0.00 3.18
3399 3548 5.279708 GCATACATTCACAGGAGGTAGCTAT 60.280 44.000 0.00 0.00 0.00 2.97
3585 3743 4.373116 GAGTCAGGCGCGTCCCAA 62.373 66.667 7.31 0.00 34.51 4.12
3605 3763 0.681733 TCTTCTGGGCACTCTGTGAC 59.318 55.000 1.52 0.00 41.56 3.67
3619 3777 4.620803 CGGCGGCCACTATATTAATCTTCT 60.621 45.833 20.71 0.00 0.00 2.85
3620 3778 3.617263 CGGCGGCCACTATATTAATCTTC 59.383 47.826 20.71 0.00 0.00 2.87
3687 3845 3.071206 ATCGGGCAGTCGCAGAGT 61.071 61.111 0.00 0.00 43.53 3.24
3714 3872 2.752238 CCCCGTCTCAGTCTCGCT 60.752 66.667 0.00 0.00 0.00 4.93
3717 3875 1.474879 CTTCTTCCCCGTCTCAGTCTC 59.525 57.143 0.00 0.00 0.00 3.36
3732 3890 3.140144 TCTCCCACACCCAATTTCTTCTT 59.860 43.478 0.00 0.00 0.00 2.52
3755 3914 1.652012 CGACACCGGCAACAACATT 59.348 52.632 0.00 0.00 0.00 2.71
3771 3930 0.981277 GTCTCCTCCCCCAAATCCGA 60.981 60.000 0.00 0.00 0.00 4.55
3800 3959 1.071605 CAGGAGACGCTGCTTTACAC 58.928 55.000 0.00 0.00 27.15 2.90
3817 3976 2.739932 CGTCAAATAGGAGCTCCCACAG 60.740 54.545 29.54 15.43 37.41 3.66
3845 4004 3.005554 CAGCAGATCCAGAATTTGACGT 58.994 45.455 0.00 0.00 0.00 4.34
3875 4034 1.890894 GACTGGTTAGCCGCTCTCA 59.109 57.895 0.00 0.00 37.67 3.27
3895 4054 1.210478 AGTCAGCAACACTTGTCAGGT 59.790 47.619 0.00 0.00 0.00 4.00
3961 4120 6.810676 GGAAACTGTGTAGGTTACTAGCTTAC 59.189 42.308 0.00 0.00 32.89 2.34
4015 4174 5.586243 GCATGACACTACATACATGTTCCTT 59.414 40.000 2.30 0.00 41.97 3.36
4079 4238 4.964593 AGTTACCGGAACATTACACACTT 58.035 39.130 9.46 0.00 40.86 3.16
4087 4246 5.672421 ACTAGCTAAGTTACCGGAACATT 57.328 39.130 9.46 7.42 40.86 2.71
4119 4278 8.150945 GGCACATATTTAATGAAGAGAGAGGTA 58.849 37.037 0.00 0.00 0.00 3.08
4160 4319 4.973168 AGTAACATCACACACTCCAACAT 58.027 39.130 0.00 0.00 0.00 2.71
4162 4321 4.992381 GAGTAACATCACACACTCCAAC 57.008 45.455 0.00 0.00 32.93 3.77
4191 4350 1.303561 GCTGGTCACAATGGGCAGA 60.304 57.895 0.00 0.00 0.00 4.26
4212 4371 9.014297 CCAGATTTTCCATTGTAGTTAGTTCTT 57.986 33.333 0.00 0.00 0.00 2.52
4214 4373 7.628580 GCCCAGATTTTCCATTGTAGTTAGTTC 60.629 40.741 0.00 0.00 0.00 3.01
4215 4374 6.152831 GCCCAGATTTTCCATTGTAGTTAGTT 59.847 38.462 0.00 0.00 0.00 2.24
4216 4375 5.652452 GCCCAGATTTTCCATTGTAGTTAGT 59.348 40.000 0.00 0.00 0.00 2.24
4218 5100 5.575157 TGCCCAGATTTTCCATTGTAGTTA 58.425 37.500 0.00 0.00 0.00 2.24
4221 5103 6.718454 AGATATGCCCAGATTTTCCATTGTAG 59.282 38.462 0.00 0.00 0.00 2.74
4225 5107 4.836736 CCAGATATGCCCAGATTTTCCATT 59.163 41.667 0.00 0.00 0.00 3.16
4229 5111 6.469782 TTTTCCAGATATGCCCAGATTTTC 57.530 37.500 0.00 0.00 0.00 2.29
4230 5112 6.872585 TTTTTCCAGATATGCCCAGATTTT 57.127 33.333 0.00 0.00 0.00 1.82
4263 5269 4.456535 TGTCTTCACAATTTCGAGGGAAA 58.543 39.130 0.00 0.00 45.60 3.13
4265 5271 3.762407 TGTCTTCACAATTTCGAGGGA 57.238 42.857 0.00 0.00 0.00 4.20
4266 5272 5.156355 CAAATGTCTTCACAATTTCGAGGG 58.844 41.667 0.00 0.00 35.64 4.30
4299 5305 7.924103 ATTGTCCAATTTTCAAACGTTACTC 57.076 32.000 0.00 0.00 0.00 2.59
4300 5306 7.762159 ACAATTGTCCAATTTTCAAACGTTACT 59.238 29.630 4.92 0.00 38.84 2.24
4301 5307 7.901002 ACAATTGTCCAATTTTCAAACGTTAC 58.099 30.769 4.92 0.00 38.84 2.50
4302 5308 8.480643 AACAATTGTCCAATTTTCAAACGTTA 57.519 26.923 12.39 0.00 38.84 3.18
4303 5309 6.976636 ACAATTGTCCAATTTTCAAACGTT 57.023 29.167 4.92 0.00 38.84 3.99
4305 5311 7.459486 TCAAACAATTGTCCAATTTTCAAACG 58.541 30.769 12.39 0.00 38.84 3.60
4306 5312 9.786105 ATTCAAACAATTGTCCAATTTTCAAAC 57.214 25.926 12.39 0.00 38.84 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.