Multiple sequence alignment - TraesCS6D01G340600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G340600 chr6D 100.000 4572 0 0 1 4572 439799289 439794718 0.000000e+00 8444.0
1 TraesCS6D01G340600 chr6B 94.208 1692 81 10 1990 3669 664823489 664821803 0.000000e+00 2566.0
2 TraesCS6D01G340600 chr6B 96.249 853 26 4 3697 4548 664821627 664820780 0.000000e+00 1393.0
3 TraesCS6D01G340600 chr6B 89.270 932 55 13 446 1358 664828089 664827184 0.000000e+00 1125.0
4 TraesCS6D01G340600 chr6B 92.667 600 38 4 1397 1991 664827181 664826583 0.000000e+00 859.0
5 TraesCS6D01G340600 chr6B 75.506 1086 208 41 787 1842 78572197 78573254 3.200000e-131 479.0
6 TraesCS6D01G340600 chr6B 82.677 508 69 14 2254 2753 78573665 78574161 2.530000e-117 433.0
7 TraesCS6D01G340600 chr6B 91.870 123 6 2 261 382 664828211 664828092 7.870000e-38 169.0
8 TraesCS6D01G340600 chr6B 100.000 31 0 0 4542 4572 664749854 664749824 1.780000e-04 58.4
9 TraesCS6D01G340600 chrUn 81.603 549 81 15 2254 2794 112384351 112383815 1.950000e-118 436.0
10 TraesCS6D01G340600 chr3D 74.864 553 126 12 2215 2760 585981966 585982512 5.910000e-59 239.0
11 TraesCS6D01G340600 chr3B 74.317 549 128 12 2252 2791 782663194 782663738 2.140000e-53 220.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G340600 chr6D 439794718 439799289 4571 True 8444.0 8444 100.0000 1 4572 1 chr6D.!!$R1 4571
1 TraesCS6D01G340600 chr6B 664820780 664828211 7431 True 1222.4 2566 92.8528 261 4548 5 chr6B.!!$R2 4287
2 TraesCS6D01G340600 chr6B 78572197 78574161 1964 False 456.0 479 79.0915 787 2753 2 chr6B.!!$F1 1966
3 TraesCS6D01G340600 chrUn 112383815 112384351 536 True 436.0 436 81.6030 2254 2794 1 chrUn.!!$R1 540
4 TraesCS6D01G340600 chr3D 585981966 585982512 546 False 239.0 239 74.8640 2215 2760 1 chr3D.!!$F1 545
5 TraesCS6D01G340600 chr3B 782663194 782663738 544 False 220.0 220 74.3170 2252 2791 1 chr3B.!!$F1 539

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
991 1017 0.032540 GTGGCAAGCTTTTGGAGTGG 59.967 55.000 0.0 0.0 0.00 4.00 F
993 1019 1.741525 GCAAGCTTTTGGAGTGGCA 59.258 52.632 0.0 0.0 0.00 4.92 F
2378 5574 1.450312 GATCTCAGTGCAACGGGGG 60.450 63.158 0.0 0.0 45.86 5.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2305 5501 2.157834 TTAATATAGCACGTGCCCCG 57.842 50.00 35.51 0.22 43.38 5.73 R
2889 6106 5.568620 AGGAAACAACCTATCAACTCTGT 57.431 39.13 0.00 0.00 38.65 3.41 R
4371 7754 0.610232 GCCATGGTCAACTCCTGCTT 60.610 55.00 14.67 0.00 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.966762 AATTGCAAAGGGCTGGTCG 59.033 52.632 1.71 0.00 45.15 4.79
19 20 1.535204 AATTGCAAAGGGCTGGTCGG 61.535 55.000 1.71 0.00 45.15 4.79
20 21 2.713531 ATTGCAAAGGGCTGGTCGGT 62.714 55.000 1.71 0.00 45.15 4.69
21 22 2.058125 TTGCAAAGGGCTGGTCGGTA 62.058 55.000 0.00 0.00 45.15 4.02
22 23 1.077716 GCAAAGGGCTGGTCGGTAT 60.078 57.895 0.00 0.00 40.25 2.73
23 24 1.376609 GCAAAGGGCTGGTCGGTATG 61.377 60.000 0.00 0.00 40.25 2.39
24 25 1.077716 AAAGGGCTGGTCGGTATGC 60.078 57.895 0.00 0.00 0.00 3.14
25 26 1.562672 AAAGGGCTGGTCGGTATGCT 61.563 55.000 0.00 0.00 0.00 3.79
26 27 0.689745 AAGGGCTGGTCGGTATGCTA 60.690 55.000 0.00 0.00 0.00 3.49
27 28 0.689745 AGGGCTGGTCGGTATGCTAA 60.690 55.000 0.00 0.00 0.00 3.09
28 29 0.179468 GGGCTGGTCGGTATGCTAAA 59.821 55.000 0.00 0.00 0.00 1.85
29 30 1.296727 GGCTGGTCGGTATGCTAAAC 58.703 55.000 0.00 0.00 0.00 2.01
30 31 0.928229 GCTGGTCGGTATGCTAAACG 59.072 55.000 0.00 0.00 0.00 3.60
31 32 1.567504 CTGGTCGGTATGCTAAACGG 58.432 55.000 0.00 0.00 0.00 4.44
32 33 0.460635 TGGTCGGTATGCTAAACGGC 60.461 55.000 0.00 0.00 0.00 5.68
33 34 0.179092 GGTCGGTATGCTAAACGGCT 60.179 55.000 1.19 0.00 0.00 5.52
34 35 1.206523 GTCGGTATGCTAAACGGCTC 58.793 55.000 0.00 0.00 0.00 4.70
35 36 0.103572 TCGGTATGCTAAACGGCTCC 59.896 55.000 0.00 0.00 0.00 4.70
36 37 0.179094 CGGTATGCTAAACGGCTCCA 60.179 55.000 0.00 0.00 0.00 3.86
37 38 1.583054 GGTATGCTAAACGGCTCCAG 58.417 55.000 0.00 0.00 0.00 3.86
38 39 1.583054 GTATGCTAAACGGCTCCAGG 58.417 55.000 0.00 0.00 0.00 4.45
39 40 1.138266 GTATGCTAAACGGCTCCAGGA 59.862 52.381 0.00 0.00 0.00 3.86
40 41 0.179000 ATGCTAAACGGCTCCAGGAG 59.821 55.000 12.81 12.81 0.00 3.69
41 42 1.153349 GCTAAACGGCTCCAGGAGG 60.153 63.158 18.83 4.87 0.00 4.30
42 43 1.614241 GCTAAACGGCTCCAGGAGGA 61.614 60.000 18.83 0.00 43.21 3.71
43 44 0.902531 CTAAACGGCTCCAGGAGGAA 59.097 55.000 18.83 0.00 45.19 3.36
44 45 0.611714 TAAACGGCTCCAGGAGGAAC 59.388 55.000 18.83 1.12 45.19 3.62
45 46 2.125766 AAACGGCTCCAGGAGGAACC 62.126 60.000 18.83 9.88 45.19 3.62
54 55 4.029472 GGAGGAACCTGTCGGCTA 57.971 61.111 0.00 0.00 35.41 3.93
55 56 2.517609 GGAGGAACCTGTCGGCTAT 58.482 57.895 0.00 0.00 35.41 2.97
56 57 0.831307 GGAGGAACCTGTCGGCTATT 59.169 55.000 0.00 0.00 35.41 1.73
57 58 2.037144 GGAGGAACCTGTCGGCTATTA 58.963 52.381 0.00 0.00 35.41 0.98
58 59 2.036089 GGAGGAACCTGTCGGCTATTAG 59.964 54.545 0.00 0.00 35.41 1.73
59 60 2.957006 GAGGAACCTGTCGGCTATTAGA 59.043 50.000 0.00 0.00 0.00 2.10
60 61 2.694109 AGGAACCTGTCGGCTATTAGAC 59.306 50.000 0.00 0.00 37.85 2.59
61 62 2.223994 GGAACCTGTCGGCTATTAGACC 60.224 54.545 0.00 0.00 36.61 3.85
67 68 2.121645 CGGCTATTAGACCGGTGGT 58.878 57.895 14.63 0.17 45.74 4.16
68 69 0.462789 CGGCTATTAGACCGGTGGTT 59.537 55.000 14.63 0.00 45.74 3.67
69 70 1.805120 CGGCTATTAGACCGGTGGTTG 60.805 57.143 14.63 0.00 45.74 3.77
70 71 1.483415 GGCTATTAGACCGGTGGTTGA 59.517 52.381 14.63 0.00 35.25 3.18
71 72 2.093341 GGCTATTAGACCGGTGGTTGAA 60.093 50.000 14.63 0.00 35.25 2.69
72 73 3.195661 GCTATTAGACCGGTGGTTGAAG 58.804 50.000 14.63 3.19 35.25 3.02
73 74 3.118884 GCTATTAGACCGGTGGTTGAAGA 60.119 47.826 14.63 0.00 35.25 2.87
74 75 4.443034 GCTATTAGACCGGTGGTTGAAGAT 60.443 45.833 14.63 0.00 35.25 2.40
75 76 3.328382 TTAGACCGGTGGTTGAAGATG 57.672 47.619 14.63 0.00 35.25 2.90
76 77 1.056660 AGACCGGTGGTTGAAGATGT 58.943 50.000 14.63 0.00 35.25 3.06
77 78 1.420138 AGACCGGTGGTTGAAGATGTT 59.580 47.619 14.63 0.00 35.25 2.71
78 79 2.635915 AGACCGGTGGTTGAAGATGTTA 59.364 45.455 14.63 0.00 35.25 2.41
79 80 3.071892 AGACCGGTGGTTGAAGATGTTAA 59.928 43.478 14.63 0.00 35.25 2.01
80 81 3.816523 GACCGGTGGTTGAAGATGTTAAA 59.183 43.478 14.63 0.00 35.25 1.52
81 82 4.403734 ACCGGTGGTTGAAGATGTTAAAT 58.596 39.130 6.12 0.00 27.29 1.40
82 83 4.457949 ACCGGTGGTTGAAGATGTTAAATC 59.542 41.667 6.12 0.00 27.29 2.17
83 84 4.700213 CCGGTGGTTGAAGATGTTAAATCT 59.300 41.667 0.00 0.00 0.00 2.40
84 85 5.183140 CCGGTGGTTGAAGATGTTAAATCTT 59.817 40.000 0.00 0.00 40.72 2.40
85 86 6.294508 CCGGTGGTTGAAGATGTTAAATCTTT 60.295 38.462 0.00 0.00 38.38 2.52
86 87 6.582295 CGGTGGTTGAAGATGTTAAATCTTTG 59.418 38.462 0.00 0.00 38.38 2.77
87 88 6.366061 GGTGGTTGAAGATGTTAAATCTTTGC 59.634 38.462 0.00 0.00 38.38 3.68
88 89 7.147976 GTGGTTGAAGATGTTAAATCTTTGCT 58.852 34.615 0.00 0.00 38.38 3.91
89 90 7.327032 GTGGTTGAAGATGTTAAATCTTTGCTC 59.673 37.037 0.00 0.00 38.38 4.26
90 91 6.808704 GGTTGAAGATGTTAAATCTTTGCTCC 59.191 38.462 0.00 0.00 38.38 4.70
91 92 6.182039 TGAAGATGTTAAATCTTTGCTCCG 57.818 37.500 0.00 0.00 38.38 4.63
92 93 5.123820 TGAAGATGTTAAATCTTTGCTCCGG 59.876 40.000 0.00 0.00 38.38 5.14
93 94 4.843728 AGATGTTAAATCTTTGCTCCGGA 58.156 39.130 2.93 2.93 0.00 5.14
94 95 4.636206 AGATGTTAAATCTTTGCTCCGGAC 59.364 41.667 0.00 0.00 0.00 4.79
95 96 3.745799 TGTTAAATCTTTGCTCCGGACA 58.254 40.909 0.00 0.46 0.00 4.02
96 97 3.500680 TGTTAAATCTTTGCTCCGGACAC 59.499 43.478 0.00 0.00 0.00 3.67
97 98 1.156736 AAATCTTTGCTCCGGACACG 58.843 50.000 0.00 0.00 40.55 4.49
107 108 3.374402 CGGACACGGCAGGAGTCT 61.374 66.667 10.44 0.00 36.18 3.24
108 109 2.574399 GGACACGGCAGGAGTCTC 59.426 66.667 10.44 0.00 32.98 3.36
109 110 2.276116 GGACACGGCAGGAGTCTCA 61.276 63.158 1.47 0.00 32.98 3.27
110 111 1.214062 GACACGGCAGGAGTCTCAG 59.786 63.158 1.47 0.00 0.00 3.35
111 112 2.219325 GACACGGCAGGAGTCTCAGG 62.219 65.000 1.47 0.00 0.00 3.86
112 113 2.118513 ACGGCAGGAGTCTCAGGT 59.881 61.111 1.47 0.00 0.00 4.00
113 114 1.979693 ACGGCAGGAGTCTCAGGTC 60.980 63.158 1.47 0.00 0.00 3.85
114 115 1.979155 CGGCAGGAGTCTCAGGTCA 60.979 63.158 1.47 0.00 0.00 4.02
115 116 1.536073 CGGCAGGAGTCTCAGGTCAA 61.536 60.000 1.47 0.00 0.00 3.18
116 117 0.687354 GGCAGGAGTCTCAGGTCAAA 59.313 55.000 1.47 0.00 0.00 2.69
117 118 1.280421 GGCAGGAGTCTCAGGTCAAAT 59.720 52.381 1.47 0.00 0.00 2.32
118 119 2.354259 GCAGGAGTCTCAGGTCAAATG 58.646 52.381 1.47 0.00 0.00 2.32
119 120 2.938756 GCAGGAGTCTCAGGTCAAATGG 60.939 54.545 1.47 0.00 0.00 3.16
120 121 1.912043 AGGAGTCTCAGGTCAAATGGG 59.088 52.381 1.47 0.00 0.00 4.00
121 122 1.630878 GGAGTCTCAGGTCAAATGGGT 59.369 52.381 1.47 0.00 0.00 4.51
122 123 2.616510 GGAGTCTCAGGTCAAATGGGTG 60.617 54.545 1.47 0.00 0.00 4.61
123 124 1.168714 GTCTCAGGTCAAATGGGTGC 58.831 55.000 0.00 0.00 0.00 5.01
124 125 0.770499 TCTCAGGTCAAATGGGTGCA 59.230 50.000 0.00 0.00 0.00 4.57
125 126 1.144708 TCTCAGGTCAAATGGGTGCAA 59.855 47.619 0.00 0.00 0.00 4.08
126 127 1.270550 CTCAGGTCAAATGGGTGCAAC 59.729 52.381 0.00 0.00 0.00 4.17
127 128 0.039256 CAGGTCAAATGGGTGCAACG 60.039 55.000 0.00 0.00 38.12 4.10
128 129 0.467290 AGGTCAAATGGGTGCAACGT 60.467 50.000 0.00 0.00 38.12 3.99
129 130 0.387565 GGTCAAATGGGTGCAACGTT 59.612 50.000 0.00 0.00 38.12 3.99
130 131 1.601914 GGTCAAATGGGTGCAACGTTC 60.602 52.381 0.00 0.00 38.12 3.95
131 132 0.671251 TCAAATGGGTGCAACGTTCC 59.329 50.000 0.00 0.00 38.12 3.62
132 133 0.662970 CAAATGGGTGCAACGTTCCG 60.663 55.000 0.00 0.00 38.12 4.30
133 134 2.414840 AAATGGGTGCAACGTTCCGC 62.415 55.000 0.00 0.00 38.12 5.54
136 137 3.587933 GGTGCAACGTTCCGCCAA 61.588 61.111 16.95 0.00 38.12 4.52
137 138 2.642700 GTGCAACGTTCCGCCAAT 59.357 55.556 0.00 0.00 0.00 3.16
138 139 1.729131 GTGCAACGTTCCGCCAATG 60.729 57.895 0.00 0.00 0.00 2.82
139 140 1.894282 TGCAACGTTCCGCCAATGA 60.894 52.632 0.00 0.00 0.00 2.57
140 141 1.284408 GCAACGTTCCGCCAATGAA 59.716 52.632 0.00 0.00 0.00 2.57
141 142 0.729140 GCAACGTTCCGCCAATGAAG 60.729 55.000 0.00 0.00 0.00 3.02
142 143 0.729140 CAACGTTCCGCCAATGAAGC 60.729 55.000 0.00 0.00 0.00 3.86
143 144 0.889186 AACGTTCCGCCAATGAAGCT 60.889 50.000 0.00 0.00 0.00 3.74
144 145 1.135315 CGTTCCGCCAATGAAGCTG 59.865 57.895 0.00 0.00 0.00 4.24
145 146 1.577328 CGTTCCGCCAATGAAGCTGT 61.577 55.000 0.00 0.00 0.00 4.40
146 147 0.598065 GTTCCGCCAATGAAGCTGTT 59.402 50.000 0.00 0.00 0.00 3.16
147 148 0.881118 TTCCGCCAATGAAGCTGTTC 59.119 50.000 0.00 0.00 0.00 3.18
148 149 0.250684 TCCGCCAATGAAGCTGTTCA 60.251 50.000 0.00 0.00 46.81 3.18
161 162 7.076842 TGAAGCTGTTCATATCTTAGCAAAC 57.923 36.000 0.00 0.00 37.79 2.93
162 163 6.654582 TGAAGCTGTTCATATCTTAGCAAACA 59.345 34.615 0.00 0.00 37.79 2.83
163 164 7.174772 TGAAGCTGTTCATATCTTAGCAAACAA 59.825 33.333 0.00 0.00 37.79 2.83
164 165 7.452880 AGCTGTTCATATCTTAGCAAACAAA 57.547 32.000 0.00 0.00 36.87 2.83
165 166 7.533426 AGCTGTTCATATCTTAGCAAACAAAG 58.467 34.615 0.00 0.00 36.87 2.77
166 167 6.749118 GCTGTTCATATCTTAGCAAACAAAGG 59.251 38.462 0.00 0.00 34.64 3.11
167 168 7.156876 TGTTCATATCTTAGCAAACAAAGGG 57.843 36.000 0.00 0.00 0.00 3.95
168 169 6.719370 TGTTCATATCTTAGCAAACAAAGGGT 59.281 34.615 0.00 0.00 0.00 4.34
169 170 6.757897 TCATATCTTAGCAAACAAAGGGTG 57.242 37.500 0.00 0.00 0.00 4.61
170 171 6.245408 TCATATCTTAGCAAACAAAGGGTGT 58.755 36.000 0.00 0.00 44.64 4.16
186 187 3.282831 GGTGTTACTGAACAACCATGC 57.717 47.619 0.00 0.00 45.97 4.06
187 188 2.621055 GGTGTTACTGAACAACCATGCA 59.379 45.455 0.00 0.00 45.97 3.96
188 189 3.067461 GGTGTTACTGAACAACCATGCAA 59.933 43.478 0.00 0.00 45.97 4.08
189 190 4.261994 GGTGTTACTGAACAACCATGCAAT 60.262 41.667 0.00 0.00 45.97 3.56
190 191 5.288804 GTGTTACTGAACAACCATGCAATT 58.711 37.500 0.00 0.00 46.99 2.32
191 192 5.752955 GTGTTACTGAACAACCATGCAATTT 59.247 36.000 0.00 0.00 46.99 1.82
192 193 6.257630 GTGTTACTGAACAACCATGCAATTTT 59.742 34.615 0.00 0.00 46.99 1.82
193 194 6.820656 TGTTACTGAACAACCATGCAATTTTT 59.179 30.769 0.00 0.00 42.66 1.94
216 217 2.028925 GCGGGGTGCAAAGTTTGG 59.971 61.111 17.11 0.70 45.45 3.28
217 218 2.791868 GCGGGGTGCAAAGTTTGGT 61.792 57.895 17.11 0.00 45.45 3.67
218 219 1.819905 CGGGGTGCAAAGTTTGGTT 59.180 52.632 17.11 0.00 0.00 3.67
219 220 0.176910 CGGGGTGCAAAGTTTGGTTT 59.823 50.000 17.11 0.00 0.00 3.27
220 221 1.804746 CGGGGTGCAAAGTTTGGTTTC 60.805 52.381 17.11 1.18 0.00 2.78
221 222 1.208293 GGGGTGCAAAGTTTGGTTTCA 59.792 47.619 17.11 3.83 0.00 2.69
222 223 2.549926 GGGTGCAAAGTTTGGTTTCAG 58.450 47.619 17.11 0.00 0.00 3.02
223 224 2.549926 GGTGCAAAGTTTGGTTTCAGG 58.450 47.619 17.11 0.00 0.00 3.86
224 225 2.093711 GGTGCAAAGTTTGGTTTCAGGT 60.094 45.455 17.11 0.00 0.00 4.00
225 226 3.186909 GTGCAAAGTTTGGTTTCAGGTC 58.813 45.455 17.11 0.00 0.00 3.85
226 227 2.167487 TGCAAAGTTTGGTTTCAGGTCC 59.833 45.455 17.11 0.00 0.00 4.46
227 228 2.483013 GCAAAGTTTGGTTTCAGGTCCC 60.483 50.000 17.11 0.00 0.00 4.46
228 229 3.031013 CAAAGTTTGGTTTCAGGTCCCT 58.969 45.455 7.78 0.00 0.00 4.20
229 230 2.658807 AGTTTGGTTTCAGGTCCCTC 57.341 50.000 0.00 0.00 0.00 4.30
230 231 1.145119 AGTTTGGTTTCAGGTCCCTCC 59.855 52.381 0.00 0.00 0.00 4.30
231 232 0.109723 TTTGGTTTCAGGTCCCTCCG 59.890 55.000 0.00 0.00 41.99 4.63
232 233 1.774894 TTGGTTTCAGGTCCCTCCGG 61.775 60.000 0.00 0.00 41.99 5.14
233 234 1.916777 GGTTTCAGGTCCCTCCGGA 60.917 63.158 2.93 2.93 41.99 5.14
245 246 4.748277 TCCCTCCGGACTGTATTTTAAG 57.252 45.455 0.00 0.00 31.13 1.85
246 247 3.118519 TCCCTCCGGACTGTATTTTAAGC 60.119 47.826 0.00 0.00 31.13 3.09
247 248 3.203716 CCTCCGGACTGTATTTTAAGCC 58.796 50.000 0.00 0.00 0.00 4.35
248 249 3.118371 CCTCCGGACTGTATTTTAAGCCT 60.118 47.826 0.00 0.00 0.00 4.58
249 250 4.514401 CTCCGGACTGTATTTTAAGCCTT 58.486 43.478 0.00 0.00 0.00 4.35
250 251 4.258543 TCCGGACTGTATTTTAAGCCTTG 58.741 43.478 0.00 0.00 0.00 3.61
251 252 4.007659 CCGGACTGTATTTTAAGCCTTGT 58.992 43.478 0.00 0.00 0.00 3.16
252 253 5.046448 TCCGGACTGTATTTTAAGCCTTGTA 60.046 40.000 0.00 0.00 0.00 2.41
253 254 5.820947 CCGGACTGTATTTTAAGCCTTGTAT 59.179 40.000 0.00 0.00 0.00 2.29
254 255 6.018180 CCGGACTGTATTTTAAGCCTTGTATC 60.018 42.308 0.00 0.00 0.00 2.24
255 256 6.292168 CGGACTGTATTTTAAGCCTTGTATCG 60.292 42.308 0.00 0.00 0.00 2.92
256 257 6.537660 GGACTGTATTTTAAGCCTTGTATCGT 59.462 38.462 0.00 0.00 0.00 3.73
257 258 7.254353 GGACTGTATTTTAAGCCTTGTATCGTC 60.254 40.741 0.00 0.00 0.00 4.20
258 259 6.255020 ACTGTATTTTAAGCCTTGTATCGTCG 59.745 38.462 0.00 0.00 0.00 5.12
259 260 5.521010 TGTATTTTAAGCCTTGTATCGTCGG 59.479 40.000 0.00 0.00 0.00 4.79
260 261 3.872511 TTTAAGCCTTGTATCGTCGGA 57.127 42.857 0.00 0.00 0.00 4.55
261 262 3.872511 TTAAGCCTTGTATCGTCGGAA 57.127 42.857 0.00 0.00 0.00 4.30
262 263 2.754946 AAGCCTTGTATCGTCGGAAA 57.245 45.000 0.00 0.00 0.00 3.13
263 264 2.981859 AGCCTTGTATCGTCGGAAAT 57.018 45.000 0.00 0.00 0.00 2.17
264 265 3.261981 AGCCTTGTATCGTCGGAAATT 57.738 42.857 0.00 0.00 0.00 1.82
265 266 3.195661 AGCCTTGTATCGTCGGAAATTC 58.804 45.455 0.00 0.00 0.00 2.17
266 267 2.287103 GCCTTGTATCGTCGGAAATTCC 59.713 50.000 0.99 0.99 0.00 3.01
344 346 6.364568 AAAAGGTTACGTAGGTCTACCATT 57.635 37.500 14.24 7.01 38.89 3.16
357 359 7.462571 AGGTCTACCATTTTTGGTATTGAAC 57.537 36.000 5.39 3.89 42.85 3.18
360 362 8.674607 GGTCTACCATTTTTGGTATTGAACTAG 58.325 37.037 5.39 0.00 42.85 2.57
361 363 9.227777 GTCTACCATTTTTGGTATTGAACTAGT 57.772 33.333 5.39 0.00 42.85 2.57
362 364 9.226606 TCTACCATTTTTGGTATTGAACTAGTG 57.773 33.333 5.39 0.00 42.85 2.74
386 388 4.996122 TGGAAACACATTTTGCATCATTCC 59.004 37.500 0.00 0.00 35.50 3.01
387 389 5.221682 TGGAAACACATTTTGCATCATTCCT 60.222 36.000 0.00 0.00 35.85 3.36
388 390 5.702209 GGAAACACATTTTGCATCATTCCTT 59.298 36.000 0.00 0.00 32.89 3.36
389 391 6.873076 GGAAACACATTTTGCATCATTCCTTA 59.127 34.615 0.00 0.00 32.89 2.69
390 392 7.387397 GGAAACACATTTTGCATCATTCCTTAA 59.613 33.333 0.00 0.00 32.89 1.85
391 393 8.674263 AAACACATTTTGCATCATTCCTTAAA 57.326 26.923 0.00 0.00 0.00 1.52
392 394 8.674263 AACACATTTTGCATCATTCCTTAAAA 57.326 26.923 0.00 0.00 0.00 1.52
393 395 8.851541 ACACATTTTGCATCATTCCTTAAAAT 57.148 26.923 0.00 0.00 0.00 1.82
394 396 8.938906 ACACATTTTGCATCATTCCTTAAAATC 58.061 29.630 0.00 0.00 0.00 2.17
395 397 8.392612 CACATTTTGCATCATTCCTTAAAATCC 58.607 33.333 0.00 0.00 0.00 3.01
396 398 7.278424 ACATTTTGCATCATTCCTTAAAATCCG 59.722 33.333 0.00 0.00 0.00 4.18
397 399 4.916983 TGCATCATTCCTTAAAATCCGG 57.083 40.909 0.00 0.00 0.00 5.14
398 400 4.531854 TGCATCATTCCTTAAAATCCGGA 58.468 39.130 6.61 6.61 0.00 5.14
399 401 4.952957 TGCATCATTCCTTAAAATCCGGAA 59.047 37.500 9.01 0.00 40.75 4.30
400 402 5.598005 TGCATCATTCCTTAAAATCCGGAAT 59.402 36.000 9.01 0.00 45.76 3.01
401 403 6.775142 TGCATCATTCCTTAAAATCCGGAATA 59.225 34.615 9.01 0.00 43.68 1.75
402 404 7.286546 TGCATCATTCCTTAAAATCCGGAATAA 59.713 33.333 9.01 7.88 43.68 1.40
403 405 8.141268 GCATCATTCCTTAAAATCCGGAATAAA 58.859 33.333 9.01 0.00 43.68 1.40
407 409 9.816354 CATTCCTTAAAATCCGGAATAAATTGT 57.184 29.630 9.01 0.00 43.68 2.71
419 421 9.537192 TCCGGAATAAATTGTATATATAAGCGG 57.463 33.333 0.00 0.00 0.00 5.52
420 422 9.537192 CCGGAATAAATTGTATATATAAGCGGA 57.463 33.333 0.00 0.00 0.00 5.54
429 431 9.765795 ATTGTATATATAAGCGGATTCTTAGGC 57.234 33.333 0.00 0.00 32.66 3.93
430 432 7.723324 TGTATATATAAGCGGATTCTTAGGCC 58.277 38.462 0.00 0.00 32.66 5.19
431 433 6.808321 ATATATAAGCGGATTCTTAGGCCA 57.192 37.500 5.01 0.00 32.66 5.36
432 434 5.700402 ATATAAGCGGATTCTTAGGCCAT 57.300 39.130 5.01 0.00 32.66 4.40
433 435 6.808321 ATATAAGCGGATTCTTAGGCCATA 57.192 37.500 5.01 0.00 32.66 2.74
434 436 3.857157 AAGCGGATTCTTAGGCCATAA 57.143 42.857 5.01 0.00 0.00 1.90
435 437 3.857157 AGCGGATTCTTAGGCCATAAA 57.143 42.857 5.01 0.00 0.00 1.40
436 438 4.373156 AGCGGATTCTTAGGCCATAAAT 57.627 40.909 5.01 0.00 0.00 1.40
437 439 4.729868 AGCGGATTCTTAGGCCATAAATT 58.270 39.130 5.01 0.00 0.00 1.82
438 440 4.520492 AGCGGATTCTTAGGCCATAAATTG 59.480 41.667 5.01 0.00 0.00 2.32
478 480 2.346766 TTGCGTGGCATGGAATATCT 57.653 45.000 9.77 0.00 38.76 1.98
515 517 7.153217 TCCTTAAAATCCGAAATCAGTTTCC 57.847 36.000 0.00 0.00 40.49 3.13
546 548 4.702831 TGGAAAAGTTGAAAGCAAATCCC 58.297 39.130 0.00 0.00 35.42 3.85
577 579 9.482627 AATTAGCGTTGATTGGTTTCAATTTTA 57.517 25.926 0.00 0.00 43.08 1.52
596 598 1.743252 GAAACTCCTCAGGCAGCGG 60.743 63.158 0.00 0.00 0.00 5.52
597 599 3.909086 AAACTCCTCAGGCAGCGGC 62.909 63.158 0.00 0.00 40.13 6.53
607 609 4.473643 GCAGCGGCCAACCATATA 57.526 55.556 2.24 0.00 34.57 0.86
608 610 1.949257 GCAGCGGCCAACCATATAC 59.051 57.895 2.24 0.00 34.57 1.47
609 611 0.535102 GCAGCGGCCAACCATATACT 60.535 55.000 2.24 0.00 34.57 2.12
610 612 1.270625 GCAGCGGCCAACCATATACTA 60.271 52.381 2.24 0.00 34.57 1.82
611 613 2.808933 GCAGCGGCCAACCATATACTAA 60.809 50.000 2.24 0.00 34.57 2.24
612 614 3.674997 CAGCGGCCAACCATATACTAAT 58.325 45.455 2.24 0.00 34.57 1.73
613 615 3.684788 CAGCGGCCAACCATATACTAATC 59.315 47.826 2.24 0.00 34.57 1.75
614 616 3.583086 AGCGGCCAACCATATACTAATCT 59.417 43.478 2.24 0.00 34.57 2.40
615 617 4.775780 AGCGGCCAACCATATACTAATCTA 59.224 41.667 2.24 0.00 34.57 1.98
616 618 5.247564 AGCGGCCAACCATATACTAATCTAA 59.752 40.000 2.24 0.00 34.57 2.10
617 619 5.350640 GCGGCCAACCATATACTAATCTAAC 59.649 44.000 2.24 0.00 34.57 2.34
618 620 5.575606 CGGCCAACCATATACTAATCTAACG 59.424 44.000 2.24 0.00 34.57 3.18
647 650 0.671251 GCTCTCATCCTACGGTCAGG 59.329 60.000 0.00 0.00 37.00 3.86
662 665 3.319405 CGGTCAGGCAGTACTCTGATATT 59.681 47.826 15.21 0.00 43.76 1.28
663 666 4.519350 CGGTCAGGCAGTACTCTGATATTA 59.481 45.833 15.21 0.00 43.76 0.98
664 667 5.184096 CGGTCAGGCAGTACTCTGATATTAT 59.816 44.000 15.21 0.00 43.76 1.28
669 672 6.892456 CAGGCAGTACTCTGATATTATCCCTA 59.108 42.308 5.81 0.00 43.76 3.53
689 692 6.155737 TCCCTAGCGGTCCCTAATAAATATTC 59.844 42.308 0.00 0.00 0.00 1.75
720 734 6.598064 TGCCATAGATATGATTCATGCTTCTG 59.402 38.462 9.46 7.61 35.75 3.02
723 737 9.397280 CCATAGATATGATTCATGCTTCTGATT 57.603 33.333 9.46 0.00 35.75 2.57
745 759 4.260985 TCATCGCATGTATTTCAAGGTGT 58.739 39.130 0.00 0.00 0.00 4.16
747 761 4.678509 TCGCATGTATTTCAAGGTGTTC 57.321 40.909 0.00 0.00 0.00 3.18
754 768 6.312399 TGTATTTCAAGGTGTTCATGTGTC 57.688 37.500 0.00 0.00 0.00 3.67
769 783 8.238631 TGTTCATGTGTCATGAAAATATGTCAG 58.761 33.333 21.40 0.00 39.43 3.51
963 985 7.769272 TCAAATTGACAATTCAAGTTTCCAC 57.231 32.000 13.68 0.00 45.44 4.02
964 986 6.475076 TCAAATTGACAATTCAAGTTTCCACG 59.525 34.615 13.68 0.00 45.44 4.94
970 996 6.142818 ACAATTCAAGTTTCCACGATGAAA 57.857 33.333 0.00 0.00 37.25 2.69
972 998 4.829064 TTCAAGTTTCCACGATGAAAGG 57.171 40.909 0.00 0.00 35.04 3.11
991 1017 0.032540 GTGGCAAGCTTTTGGAGTGG 59.967 55.000 0.00 0.00 0.00 4.00
993 1019 1.741525 GCAAGCTTTTGGAGTGGCA 59.258 52.632 0.00 0.00 0.00 4.92
1022 1048 7.015974 TCTCATGTCATATCTTGTTCTAGCCAT 59.984 37.037 0.00 0.00 0.00 4.40
1084 1110 6.668541 ATATTGACCAGATTCGACAAGTTG 57.331 37.500 0.00 0.00 0.00 3.16
1095 1121 9.907576 CAGATTCGACAAGTTGATAAAACTATC 57.092 33.333 10.54 2.05 0.00 2.08
1196 1228 8.993121 TCTAACAAGAAGATGAATCAAACAGAC 58.007 33.333 0.00 0.00 0.00 3.51
1218 1250 4.022603 CGGATGGAGGAGATGTCTATGAT 58.977 47.826 0.00 0.00 0.00 2.45
1223 1255 4.202295 TGGAGGAGATGTCTATGATTGCAC 60.202 45.833 0.00 0.00 0.00 4.57
1327 1360 5.780793 AGATTTATAATCGTAGTGGGGCTCT 59.219 40.000 0.00 0.00 0.00 4.09
1335 1368 3.117776 TCGTAGTGGGGCTCTTACTGATA 60.118 47.826 4.58 0.00 0.00 2.15
1352 1385 9.778741 CTTACTGATATAGCTTTATGTTTGGGA 57.221 33.333 1.01 0.00 0.00 4.37
1370 1403 9.104965 TGTTTGGGAACATAGACGAATATTAAG 57.895 33.333 0.00 0.00 40.71 1.85
1586 1625 3.146066 CAAGTTCCTTTCCGAATGGACA 58.854 45.455 13.91 5.05 46.45 4.02
1693 1732 4.693283 TCGTAACAATAGAAGGGAGCATG 58.307 43.478 0.00 0.00 0.00 4.06
1716 1758 3.894759 AGCAGGACACAATATTGATGCT 58.105 40.909 22.16 21.03 37.91 3.79
1748 1790 4.929146 AGTTTAAGCAACTAGGGGTGAT 57.071 40.909 0.00 0.00 44.56 3.06
1910 1998 7.970061 TCATACTTAAATGATGCTTTGCAAGAC 59.030 33.333 0.00 0.00 43.62 3.01
1911 1999 5.156355 ACTTAAATGATGCTTTGCAAGACG 58.844 37.500 0.00 0.00 43.62 4.18
1933 2021 6.223852 ACGAAATATATGGATGTGAGTCACC 58.776 40.000 20.43 6.06 32.73 4.02
1946 2034 6.767524 TGTGAGTCACCAAAACAATAAACT 57.232 33.333 20.43 0.00 32.73 2.66
1961 2049 7.230849 ACAATAAACTGAGCAATCCATTCAA 57.769 32.000 0.00 0.00 0.00 2.69
1967 2055 6.630444 ACTGAGCAATCCATTCAATATCAC 57.370 37.500 0.00 0.00 0.00 3.06
1969 2057 6.776116 ACTGAGCAATCCATTCAATATCACAT 59.224 34.615 0.00 0.00 0.00 3.21
1971 2059 8.694581 TGAGCAATCCATTCAATATCACATAA 57.305 30.769 0.00 0.00 0.00 1.90
2011 5197 9.143631 GGACATCCTTATTTGAAATTTTGAGTG 57.856 33.333 0.00 0.00 0.00 3.51
2078 5265 6.520792 AAATAATAACCTGCGTATCGACAC 57.479 37.500 0.00 0.00 0.00 3.67
2094 5281 3.119459 TCGACACTCTTTCCAGTCTATGC 60.119 47.826 0.00 0.00 0.00 3.14
2183 5370 6.490040 TCTTTTTGTACTGGCAGCTTTAAGAT 59.510 34.615 15.89 0.00 0.00 2.40
2378 5574 1.450312 GATCTCAGTGCAACGGGGG 60.450 63.158 0.00 0.00 45.86 5.40
2405 5604 5.972327 AATTGATAATGGGCCAAATGGAA 57.028 34.783 11.89 1.22 37.39 3.53
2769 5984 4.762289 AGGTATTCCCTTGTGCTTCTAG 57.238 45.455 0.00 0.00 42.73 2.43
2828 6045 7.585286 ATGCACAAACATGAATTTACATCAC 57.415 32.000 0.00 0.00 0.00 3.06
2829 6046 6.510536 TGCACAAACATGAATTTACATCACA 58.489 32.000 0.00 0.00 0.00 3.58
2924 6141 5.104735 AGGTTGTTTCCTATCATCTCACTCC 60.105 44.000 0.00 0.00 35.87 3.85
2998 6215 5.750352 ACTGAACTTCCCGGTTAGAATTA 57.250 39.130 0.00 0.00 0.00 1.40
2999 6216 6.309389 ACTGAACTTCCCGGTTAGAATTAT 57.691 37.500 0.00 0.00 0.00 1.28
3079 6299 6.382570 ACTGATTTCTAGTCCTTGCTATGAGT 59.617 38.462 0.00 0.00 0.00 3.41
3139 6359 5.907207 AGTATAATAGCCTCGTATGCATGG 58.093 41.667 10.16 2.51 0.00 3.66
3164 6384 8.945057 GGAAATTTTACACCATTGTATGCAATT 58.055 29.630 6.26 0.00 42.91 2.32
3205 6425 9.513906 TCATGTTCTGAATTTTATTAGGACACA 57.486 29.630 0.00 0.00 31.88 3.72
3241 6461 1.843206 TGGGTAGCATATGGTGAAGCA 59.157 47.619 17.58 0.00 0.00 3.91
3382 6602 2.290960 GGGTAGTGGACATTTTGCCTCT 60.291 50.000 0.00 0.00 33.10 3.69
3424 6644 7.039882 CAGCTTTCATAAAGAGCATCCAAATT 58.960 34.615 3.63 0.00 41.02 1.82
3547 6767 6.607004 AAGGAGGGTATGCATATGTACTAC 57.393 41.667 10.16 6.83 0.00 2.73
3600 6820 8.690840 GTGTAATCAAACTGCAATAAAGTTGTC 58.309 33.333 0.00 0.00 37.90 3.18
3608 6828 8.848474 AACTGCAATAAAGTTGTCACTATACT 57.152 30.769 0.00 0.00 36.52 2.12
3617 6837 5.700846 AGTTGTCACTATACTGTCGAGTTG 58.299 41.667 0.00 0.00 33.21 3.16
3627 6847 9.298250 ACTATACTGTCGAGTTGGACATATATT 57.702 33.333 0.00 0.00 45.23 1.28
3687 7069 8.868522 TGGATGTTTGATTTTTGATACTCTCT 57.131 30.769 0.00 0.00 0.00 3.10
3688 7070 8.950210 TGGATGTTTGATTTTTGATACTCTCTC 58.050 33.333 0.00 0.00 0.00 3.20
3689 7071 9.171877 GGATGTTTGATTTTTGATACTCTCTCT 57.828 33.333 0.00 0.00 0.00 3.10
3691 7073 9.956640 ATGTTTGATTTTTGATACTCTCTCTCT 57.043 29.630 0.00 0.00 0.00 3.10
3692 7074 9.429359 TGTTTGATTTTTGATACTCTCTCTCTC 57.571 33.333 0.00 0.00 0.00 3.20
3693 7075 9.651913 GTTTGATTTTTGATACTCTCTCTCTCT 57.348 33.333 0.00 0.00 0.00 3.10
3694 7076 9.868277 TTTGATTTTTGATACTCTCTCTCTCTC 57.132 33.333 0.00 0.00 0.00 3.20
3695 7077 8.821686 TGATTTTTGATACTCTCTCTCTCTCT 57.178 34.615 0.00 0.00 0.00 3.10
3776 7158 3.252458 ACTGCTTGCTTACCTTTTAACCG 59.748 43.478 0.00 0.00 0.00 4.44
3801 7183 5.059161 TGCATATCCTCTCAATGTAACAGC 58.941 41.667 0.00 0.00 0.00 4.40
3840 7222 0.175760 TAACCGCTGCATGTCCTCTC 59.824 55.000 0.00 0.00 0.00 3.20
3851 7233 3.243839 GCATGTCCTCTCAATCTCTCTCC 60.244 52.174 0.00 0.00 0.00 3.71
3852 7234 2.649190 TGTCCTCTCAATCTCTCTCCG 58.351 52.381 0.00 0.00 0.00 4.63
3860 7242 0.173708 AATCTCTCTCCGTTCGGTGC 59.826 55.000 11.04 0.00 0.00 5.01
3921 7303 0.948623 TCCACATGTATATGCGCGCC 60.949 55.000 30.77 13.48 37.85 6.53
3925 7307 1.070615 ATGTATATGCGCGCCCACA 59.929 52.632 30.77 24.86 0.00 4.17
3979 7362 3.194116 GGCAGATCAAAATCCACACACAT 59.806 43.478 0.00 0.00 31.78 3.21
4012 7395 0.955178 ACCGGATCTATCTGCAGTCG 59.045 55.000 14.67 3.49 31.76 4.18
4013 7396 0.242286 CCGGATCTATCTGCAGTCGG 59.758 60.000 14.67 12.16 31.76 4.79
4020 7403 2.094700 TCTATCTGCAGTCGGAACACAC 60.095 50.000 14.67 0.00 0.00 3.82
4022 7405 2.279851 TGCAGTCGGAACACACGG 60.280 61.111 0.00 0.00 0.00 4.94
4059 7442 1.762957 ACACGAGCAGGGCTATAACAT 59.237 47.619 0.00 0.00 39.88 2.71
4109 7492 2.472934 GCGGGTCGCGTTTGTTAG 59.527 61.111 5.77 0.00 44.55 2.34
4276 7659 6.704493 GGCCATAGAGATCGTAAATTTGTGTA 59.296 38.462 0.00 0.00 0.00 2.90
4300 7683 5.959618 AACCTTTAGCTGTGACAATAACC 57.040 39.130 0.00 0.00 0.00 2.85
4305 7688 6.640907 CCTTTAGCTGTGACAATAACCAAAAC 59.359 38.462 0.00 0.00 0.00 2.43
4317 7700 9.836076 GACAATAACCAAAACTTTGTACTATCC 57.164 33.333 0.00 0.00 36.45 2.59
4371 7754 3.138098 TGATGCCAACCTATAGCATTCCA 59.862 43.478 0.00 0.00 46.81 3.53
4389 7772 1.171308 CAAGCAGGAGTTGACCATGG 58.829 55.000 11.19 11.19 0.00 3.66
4402 7785 0.469917 ACCATGGCCTTCGTATCCTG 59.530 55.000 13.04 0.00 0.00 3.86
4403 7786 0.250467 CCATGGCCTTCGTATCCTGG 60.250 60.000 3.32 0.00 0.00 4.45
4548 7931 3.264450 AGATGGGAATGAGGAAGAACGTT 59.736 43.478 0.00 0.00 0.00 3.99
4549 7932 3.053831 TGGGAATGAGGAAGAACGTTC 57.946 47.619 20.71 20.71 0.00 3.95
4550 7933 2.000447 GGGAATGAGGAAGAACGTTCG 59.000 52.381 21.87 0.00 34.18 3.95
4551 7934 2.353406 GGGAATGAGGAAGAACGTTCGA 60.353 50.000 21.87 4.43 34.18 3.71
4552 7935 2.666994 GGAATGAGGAAGAACGTTCGAC 59.333 50.000 21.87 18.31 34.18 4.20
4553 7936 3.314553 GAATGAGGAAGAACGTTCGACA 58.685 45.455 21.87 17.26 0.00 4.35
4554 7937 2.875087 TGAGGAAGAACGTTCGACAA 57.125 45.000 21.87 5.15 0.00 3.18
4555 7938 3.167921 TGAGGAAGAACGTTCGACAAA 57.832 42.857 21.87 5.68 0.00 2.83
4556 7939 3.120792 TGAGGAAGAACGTTCGACAAAG 58.879 45.455 21.87 0.00 0.00 2.77
4557 7940 2.475487 GAGGAAGAACGTTCGACAAAGG 59.525 50.000 21.87 0.00 0.00 3.11
4558 7941 2.101917 AGGAAGAACGTTCGACAAAGGA 59.898 45.455 21.87 0.00 0.00 3.36
4559 7942 2.475487 GGAAGAACGTTCGACAAAGGAG 59.525 50.000 21.87 0.00 0.00 3.69
4560 7943 2.884894 AGAACGTTCGACAAAGGAGT 57.115 45.000 21.87 0.00 0.00 3.85
4561 7944 2.740452 AGAACGTTCGACAAAGGAGTC 58.260 47.619 21.87 0.00 35.19 3.36
4562 7945 2.361438 AGAACGTTCGACAAAGGAGTCT 59.639 45.455 21.87 0.00 36.38 3.24
4563 7946 2.135664 ACGTTCGACAAAGGAGTCTG 57.864 50.000 0.00 0.00 36.38 3.51
4564 7947 1.679680 ACGTTCGACAAAGGAGTCTGA 59.320 47.619 0.00 0.00 36.38 3.27
4565 7948 2.052157 CGTTCGACAAAGGAGTCTGAC 58.948 52.381 0.00 0.00 36.38 3.51
4566 7949 2.405172 GTTCGACAAAGGAGTCTGACC 58.595 52.381 3.76 0.00 36.38 4.02
4567 7950 1.996798 TCGACAAAGGAGTCTGACCT 58.003 50.000 3.76 0.00 39.69 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 1.077716 ATACCGACCAGCCCTTTGC 60.078 57.895 0.00 0.00 41.71 3.68
6 7 1.077716 GCATACCGACCAGCCCTTT 60.078 57.895 0.00 0.00 0.00 3.11
7 8 0.689745 TAGCATACCGACCAGCCCTT 60.690 55.000 0.00 0.00 0.00 3.95
8 9 0.689745 TTAGCATACCGACCAGCCCT 60.690 55.000 0.00 0.00 0.00 5.19
9 10 0.179468 TTTAGCATACCGACCAGCCC 59.821 55.000 0.00 0.00 0.00 5.19
10 11 1.296727 GTTTAGCATACCGACCAGCC 58.703 55.000 0.00 0.00 0.00 4.85
11 12 0.928229 CGTTTAGCATACCGACCAGC 59.072 55.000 0.00 0.00 0.00 4.85
12 13 1.567504 CCGTTTAGCATACCGACCAG 58.432 55.000 0.00 0.00 0.00 4.00
14 15 0.179092 AGCCGTTTAGCATACCGACC 60.179 55.000 0.00 0.00 34.23 4.79
15 16 1.206523 GAGCCGTTTAGCATACCGAC 58.793 55.000 0.00 0.00 34.23 4.79
16 17 0.103572 GGAGCCGTTTAGCATACCGA 59.896 55.000 0.00 0.00 34.23 4.69
17 18 0.179094 TGGAGCCGTTTAGCATACCG 60.179 55.000 0.00 0.00 34.23 4.02
18 19 1.583054 CTGGAGCCGTTTAGCATACC 58.417 55.000 0.00 0.00 34.23 2.73
19 20 1.138266 TCCTGGAGCCGTTTAGCATAC 59.862 52.381 0.00 0.00 34.23 2.39
20 21 1.412710 CTCCTGGAGCCGTTTAGCATA 59.587 52.381 11.42 0.00 34.23 3.14
21 22 0.179000 CTCCTGGAGCCGTTTAGCAT 59.821 55.000 11.42 0.00 34.23 3.79
22 23 1.596934 CTCCTGGAGCCGTTTAGCA 59.403 57.895 11.42 0.00 34.23 3.49
23 24 1.153349 CCTCCTGGAGCCGTTTAGC 60.153 63.158 18.51 0.00 34.57 3.09
24 25 0.902531 TTCCTCCTGGAGCCGTTTAG 59.097 55.000 18.51 2.93 44.24 1.85
25 26 0.611714 GTTCCTCCTGGAGCCGTTTA 59.388 55.000 18.51 0.00 44.24 2.01
26 27 1.375326 GTTCCTCCTGGAGCCGTTT 59.625 57.895 18.51 0.00 44.24 3.60
27 28 3.069778 GTTCCTCCTGGAGCCGTT 58.930 61.111 18.51 0.00 44.24 4.44
37 38 0.831307 AATAGCCGACAGGTTCCTCC 59.169 55.000 0.00 0.00 40.50 4.30
38 39 2.957006 TCTAATAGCCGACAGGTTCCTC 59.043 50.000 0.00 0.00 40.50 3.71
39 40 2.694109 GTCTAATAGCCGACAGGTTCCT 59.306 50.000 0.00 0.00 40.50 3.36
40 41 2.223994 GGTCTAATAGCCGACAGGTTCC 60.224 54.545 0.00 0.00 40.50 3.62
41 42 3.095102 GGTCTAATAGCCGACAGGTTC 57.905 52.381 0.00 0.00 40.50 3.62
49 50 0.462789 AACCACCGGTCTAATAGCCG 59.537 55.000 2.59 13.56 46.80 5.52
50 51 1.483415 TCAACCACCGGTCTAATAGCC 59.517 52.381 2.59 0.00 33.12 3.93
51 52 2.973694 TCAACCACCGGTCTAATAGC 57.026 50.000 2.59 0.00 33.12 2.97
52 53 4.730949 TCTTCAACCACCGGTCTAATAG 57.269 45.455 2.59 0.00 33.12 1.73
53 54 4.468510 ACATCTTCAACCACCGGTCTAATA 59.531 41.667 2.59 0.00 33.12 0.98
54 55 3.263425 ACATCTTCAACCACCGGTCTAAT 59.737 43.478 2.59 0.00 33.12 1.73
55 56 2.635915 ACATCTTCAACCACCGGTCTAA 59.364 45.455 2.59 0.00 33.12 2.10
56 57 2.253610 ACATCTTCAACCACCGGTCTA 58.746 47.619 2.59 0.00 33.12 2.59
57 58 1.056660 ACATCTTCAACCACCGGTCT 58.943 50.000 2.59 0.00 33.12 3.85
58 59 1.892209 AACATCTTCAACCACCGGTC 58.108 50.000 2.59 0.00 33.12 4.79
59 60 3.495434 TTAACATCTTCAACCACCGGT 57.505 42.857 0.00 0.00 37.65 5.28
60 61 4.700213 AGATTTAACATCTTCAACCACCGG 59.300 41.667 0.00 0.00 0.00 5.28
61 62 5.880054 AGATTTAACATCTTCAACCACCG 57.120 39.130 0.00 0.00 0.00 4.94
62 63 6.366061 GCAAAGATTTAACATCTTCAACCACC 59.634 38.462 11.05 0.00 37.38 4.61
63 64 7.147976 AGCAAAGATTTAACATCTTCAACCAC 58.852 34.615 11.05 0.00 37.38 4.16
64 65 7.288810 AGCAAAGATTTAACATCTTCAACCA 57.711 32.000 11.05 0.00 37.38 3.67
65 66 6.808704 GGAGCAAAGATTTAACATCTTCAACC 59.191 38.462 11.05 9.45 37.38 3.77
66 67 6.524586 CGGAGCAAAGATTTAACATCTTCAAC 59.475 38.462 11.05 6.39 37.38 3.18
67 68 6.349280 CCGGAGCAAAGATTTAACATCTTCAA 60.349 38.462 0.00 0.00 37.38 2.69
68 69 5.123820 CCGGAGCAAAGATTTAACATCTTCA 59.876 40.000 0.00 0.00 37.38 3.02
69 70 5.354234 TCCGGAGCAAAGATTTAACATCTTC 59.646 40.000 0.00 3.78 37.38 2.87
70 71 5.123979 GTCCGGAGCAAAGATTTAACATCTT 59.876 40.000 3.06 6.92 39.82 2.40
71 72 4.636206 GTCCGGAGCAAAGATTTAACATCT 59.364 41.667 3.06 0.00 0.00 2.90
72 73 4.394920 TGTCCGGAGCAAAGATTTAACATC 59.605 41.667 3.06 0.00 0.00 3.06
73 74 4.156008 GTGTCCGGAGCAAAGATTTAACAT 59.844 41.667 3.06 0.00 0.00 2.71
74 75 3.500680 GTGTCCGGAGCAAAGATTTAACA 59.499 43.478 3.06 0.00 0.00 2.41
75 76 3.424433 CGTGTCCGGAGCAAAGATTTAAC 60.424 47.826 3.06 0.00 0.00 2.01
76 77 2.739913 CGTGTCCGGAGCAAAGATTTAA 59.260 45.455 3.06 0.00 0.00 1.52
77 78 2.343101 CGTGTCCGGAGCAAAGATTTA 58.657 47.619 3.06 0.00 0.00 1.40
78 79 1.156736 CGTGTCCGGAGCAAAGATTT 58.843 50.000 3.06 0.00 0.00 2.17
79 80 2.840974 CGTGTCCGGAGCAAAGATT 58.159 52.632 3.06 0.00 0.00 2.40
80 81 4.598257 CGTGTCCGGAGCAAAGAT 57.402 55.556 3.06 0.00 0.00 2.40
90 91 3.343788 GAGACTCCTGCCGTGTCCG 62.344 68.421 0.00 0.00 35.92 4.79
91 92 2.219325 CTGAGACTCCTGCCGTGTCC 62.219 65.000 0.00 0.00 35.92 4.02
92 93 1.214062 CTGAGACTCCTGCCGTGTC 59.786 63.158 0.00 0.00 35.60 3.67
93 94 2.279069 CCTGAGACTCCTGCCGTGT 61.279 63.158 0.00 0.00 0.00 4.49
94 95 2.219325 GACCTGAGACTCCTGCCGTG 62.219 65.000 0.00 0.00 0.00 4.94
95 96 1.979693 GACCTGAGACTCCTGCCGT 60.980 63.158 0.00 0.00 0.00 5.68
96 97 1.536073 TTGACCTGAGACTCCTGCCG 61.536 60.000 0.00 0.00 0.00 5.69
97 98 0.687354 TTTGACCTGAGACTCCTGCC 59.313 55.000 0.00 0.00 0.00 4.85
98 99 2.354259 CATTTGACCTGAGACTCCTGC 58.646 52.381 0.00 0.00 0.00 4.85
99 100 2.355513 CCCATTTGACCTGAGACTCCTG 60.356 54.545 0.00 0.00 0.00 3.86
100 101 1.912043 CCCATTTGACCTGAGACTCCT 59.088 52.381 0.00 0.00 0.00 3.69
101 102 1.630878 ACCCATTTGACCTGAGACTCC 59.369 52.381 0.00 0.00 0.00 3.85
102 103 2.704572 CACCCATTTGACCTGAGACTC 58.295 52.381 0.00 0.00 0.00 3.36
103 104 1.271597 GCACCCATTTGACCTGAGACT 60.272 52.381 0.00 0.00 0.00 3.24
104 105 1.168714 GCACCCATTTGACCTGAGAC 58.831 55.000 0.00 0.00 0.00 3.36
105 106 0.770499 TGCACCCATTTGACCTGAGA 59.230 50.000 0.00 0.00 0.00 3.27
106 107 1.270550 GTTGCACCCATTTGACCTGAG 59.729 52.381 0.00 0.00 0.00 3.35
107 108 1.327303 GTTGCACCCATTTGACCTGA 58.673 50.000 0.00 0.00 0.00 3.86
108 109 0.039256 CGTTGCACCCATTTGACCTG 60.039 55.000 0.00 0.00 0.00 4.00
109 110 0.467290 ACGTTGCACCCATTTGACCT 60.467 50.000 0.00 0.00 0.00 3.85
110 111 0.387565 AACGTTGCACCCATTTGACC 59.612 50.000 0.00 0.00 0.00 4.02
111 112 1.601914 GGAACGTTGCACCCATTTGAC 60.602 52.381 15.52 0.00 0.00 3.18
112 113 0.671251 GGAACGTTGCACCCATTTGA 59.329 50.000 15.52 0.00 0.00 2.69
113 114 3.193471 GGAACGTTGCACCCATTTG 57.807 52.632 15.52 0.00 0.00 2.32
127 128 0.598065 AACAGCTTCATTGGCGGAAC 59.402 50.000 0.00 0.00 34.52 3.62
128 129 0.881118 GAACAGCTTCATTGGCGGAA 59.119 50.000 0.00 0.00 34.52 4.30
129 130 0.250684 TGAACAGCTTCATTGGCGGA 60.251 50.000 0.00 0.00 31.00 5.54
130 131 0.813184 ATGAACAGCTTCATTGGCGG 59.187 50.000 0.00 0.00 43.48 6.13
131 132 3.562973 AGATATGAACAGCTTCATTGGCG 59.437 43.478 6.23 0.00 43.48 5.69
132 133 5.511234 AAGATATGAACAGCTTCATTGGC 57.489 39.130 6.23 0.00 43.48 4.52
133 134 6.261603 TGCTAAGATATGAACAGCTTCATTGG 59.738 38.462 6.23 0.00 43.48 3.16
134 135 7.255491 TGCTAAGATATGAACAGCTTCATTG 57.745 36.000 6.23 0.00 43.48 2.82
135 136 7.870509 TTGCTAAGATATGAACAGCTTCATT 57.129 32.000 6.23 0.00 43.48 2.57
136 137 7.337689 TGTTTGCTAAGATATGAACAGCTTCAT 59.662 33.333 6.18 6.18 46.84 2.57
137 138 6.654582 TGTTTGCTAAGATATGAACAGCTTCA 59.345 34.615 0.00 0.00 40.77 3.02
138 139 7.076842 TGTTTGCTAAGATATGAACAGCTTC 57.923 36.000 0.00 0.00 33.38 3.86
139 140 7.452880 TTGTTTGCTAAGATATGAACAGCTT 57.547 32.000 0.00 0.00 33.38 3.74
140 141 7.362401 CCTTTGTTTGCTAAGATATGAACAGCT 60.362 37.037 0.00 0.00 33.38 4.24
141 142 6.749118 CCTTTGTTTGCTAAGATATGAACAGC 59.251 38.462 0.00 0.00 30.76 4.40
142 143 7.094205 ACCCTTTGTTTGCTAAGATATGAACAG 60.094 37.037 0.00 0.00 30.76 3.16
143 144 6.719370 ACCCTTTGTTTGCTAAGATATGAACA 59.281 34.615 0.00 0.00 30.76 3.18
144 145 7.029563 CACCCTTTGTTTGCTAAGATATGAAC 58.970 38.462 0.00 0.00 30.76 3.18
145 146 6.719370 ACACCCTTTGTTTGCTAAGATATGAA 59.281 34.615 0.00 0.00 33.09 2.57
146 147 6.245408 ACACCCTTTGTTTGCTAAGATATGA 58.755 36.000 0.00 0.00 33.09 2.15
147 148 6.515272 ACACCCTTTGTTTGCTAAGATATG 57.485 37.500 0.00 0.00 33.09 1.78
159 160 6.273941 TGGTTGTTCAGTAACACCCTTTGTT 61.274 40.000 6.43 0.00 45.78 2.83
160 161 3.697542 GGTTGTTCAGTAACACCCTTTGT 59.302 43.478 0.00 0.00 45.18 2.83
161 162 3.697045 TGGTTGTTCAGTAACACCCTTTG 59.303 43.478 6.43 0.00 45.78 2.77
162 163 3.970842 TGGTTGTTCAGTAACACCCTTT 58.029 40.909 6.43 0.00 45.78 3.11
163 164 3.655615 TGGTTGTTCAGTAACACCCTT 57.344 42.857 6.43 0.00 45.78 3.95
164 165 3.486383 CATGGTTGTTCAGTAACACCCT 58.514 45.455 6.43 0.00 45.78 4.34
165 166 2.030274 GCATGGTTGTTCAGTAACACCC 60.030 50.000 0.00 0.00 45.79 4.61
166 167 2.621055 TGCATGGTTGTTCAGTAACACC 59.379 45.455 0.00 0.00 45.18 4.16
167 168 3.980646 TGCATGGTTGTTCAGTAACAC 57.019 42.857 0.00 0.00 45.18 3.32
168 169 5.528043 AATTGCATGGTTGTTCAGTAACA 57.472 34.783 0.00 0.00 43.85 2.41
169 170 6.843069 AAAATTGCATGGTTGTTCAGTAAC 57.157 33.333 0.00 0.00 36.07 2.50
199 200 2.028925 CCAAACTTTGCACCCCGC 59.971 61.111 0.00 0.00 42.89 6.13
200 201 0.176910 AAACCAAACTTTGCACCCCG 59.823 50.000 0.00 0.00 0.00 5.73
201 202 1.208293 TGAAACCAAACTTTGCACCCC 59.792 47.619 0.00 0.00 0.00 4.95
202 203 2.549926 CTGAAACCAAACTTTGCACCC 58.450 47.619 0.00 0.00 0.00 4.61
203 204 2.093711 ACCTGAAACCAAACTTTGCACC 60.094 45.455 0.00 0.00 0.00 5.01
204 205 3.186909 GACCTGAAACCAAACTTTGCAC 58.813 45.455 0.00 0.00 0.00 4.57
205 206 2.167487 GGACCTGAAACCAAACTTTGCA 59.833 45.455 0.00 0.00 0.00 4.08
206 207 2.483013 GGGACCTGAAACCAAACTTTGC 60.483 50.000 0.00 0.00 0.00 3.68
207 208 3.031013 AGGGACCTGAAACCAAACTTTG 58.969 45.455 0.00 0.00 0.00 2.77
208 209 3.296854 GAGGGACCTGAAACCAAACTTT 58.703 45.455 0.00 0.00 0.00 2.66
209 210 2.424379 GGAGGGACCTGAAACCAAACTT 60.424 50.000 0.00 0.00 35.41 2.66
210 211 1.145119 GGAGGGACCTGAAACCAAACT 59.855 52.381 0.00 0.00 35.41 2.66
211 212 1.617322 GGAGGGACCTGAAACCAAAC 58.383 55.000 0.00 0.00 35.41 2.93
212 213 0.109723 CGGAGGGACCTGAAACCAAA 59.890 55.000 0.00 0.00 36.31 3.28
213 214 1.758592 CGGAGGGACCTGAAACCAA 59.241 57.895 0.00 0.00 36.31 3.67
214 215 3.478780 CGGAGGGACCTGAAACCA 58.521 61.111 0.00 0.00 36.31 3.67
227 228 4.138487 AGGCTTAAAATACAGTCCGGAG 57.862 45.455 3.06 0.00 0.00 4.63
228 229 4.258543 CAAGGCTTAAAATACAGTCCGGA 58.741 43.478 0.00 0.00 0.00 5.14
229 230 4.007659 ACAAGGCTTAAAATACAGTCCGG 58.992 43.478 0.00 0.00 0.00 5.14
230 231 6.292168 CGATACAAGGCTTAAAATACAGTCCG 60.292 42.308 0.00 0.00 0.00 4.79
231 232 6.537660 ACGATACAAGGCTTAAAATACAGTCC 59.462 38.462 0.00 0.00 0.00 3.85
232 233 7.514747 CGACGATACAAGGCTTAAAATACAGTC 60.515 40.741 0.00 2.28 0.00 3.51
233 234 6.255020 CGACGATACAAGGCTTAAAATACAGT 59.745 38.462 0.00 0.00 0.00 3.55
234 235 6.292168 CCGACGATACAAGGCTTAAAATACAG 60.292 42.308 0.00 0.00 0.00 2.74
235 236 5.521010 CCGACGATACAAGGCTTAAAATACA 59.479 40.000 0.00 0.00 0.00 2.29
236 237 5.750067 TCCGACGATACAAGGCTTAAAATAC 59.250 40.000 0.00 0.00 0.00 1.89
237 238 5.904941 TCCGACGATACAAGGCTTAAAATA 58.095 37.500 0.00 0.00 0.00 1.40
238 239 4.761975 TCCGACGATACAAGGCTTAAAAT 58.238 39.130 0.00 0.00 0.00 1.82
239 240 4.191033 TCCGACGATACAAGGCTTAAAA 57.809 40.909 0.00 0.00 0.00 1.52
240 241 3.872511 TCCGACGATACAAGGCTTAAA 57.127 42.857 0.00 0.00 0.00 1.52
241 242 3.872511 TTCCGACGATACAAGGCTTAA 57.127 42.857 0.00 0.00 0.00 1.85
242 243 3.872511 TTTCCGACGATACAAGGCTTA 57.127 42.857 0.00 0.00 0.00 3.09
243 244 2.754946 TTTCCGACGATACAAGGCTT 57.245 45.000 0.00 0.00 0.00 4.35
244 245 2.981859 ATTTCCGACGATACAAGGCT 57.018 45.000 0.00 0.00 0.00 4.58
245 246 2.287103 GGAATTTCCGACGATACAAGGC 59.713 50.000 0.00 0.00 0.00 4.35
246 247 3.527533 TGGAATTTCCGACGATACAAGG 58.472 45.455 10.79 0.00 40.17 3.61
247 248 5.121768 AGTTTGGAATTTCCGACGATACAAG 59.878 40.000 10.79 0.00 40.17 3.16
248 249 4.998672 AGTTTGGAATTTCCGACGATACAA 59.001 37.500 10.79 0.00 40.17 2.41
249 250 4.571919 AGTTTGGAATTTCCGACGATACA 58.428 39.130 10.79 0.00 40.17 2.29
250 251 6.839820 ATAGTTTGGAATTTCCGACGATAC 57.160 37.500 10.79 4.35 40.17 2.24
252 253 9.151471 CATATATAGTTTGGAATTTCCGACGAT 57.849 33.333 10.79 14.06 40.17 3.73
253 254 8.145767 ACATATATAGTTTGGAATTTCCGACGA 58.854 33.333 10.79 8.56 40.17 4.20
254 255 8.306680 ACATATATAGTTTGGAATTTCCGACG 57.693 34.615 10.79 0.00 40.17 5.12
255 256 9.878599 CAACATATATAGTTTGGAATTTCCGAC 57.121 33.333 10.79 11.33 40.17 4.79
256 257 9.839817 TCAACATATATAGTTTGGAATTTCCGA 57.160 29.630 10.79 6.11 40.17 4.55
344 346 7.339721 TGTTTCCACACTAGTTCAATACCAAAA 59.660 33.333 0.00 0.00 0.00 2.44
362 364 5.106987 GGAATGATGCAAAATGTGTTTCCAC 60.107 40.000 0.00 0.00 42.19 4.02
371 373 7.254522 CCGGATTTTAAGGAATGATGCAAAATG 60.255 37.037 0.00 0.00 0.00 2.32
393 395 9.537192 CCGCTTATATATACAATTTATTCCGGA 57.463 33.333 0.00 0.00 0.00 5.14
394 396 9.537192 TCCGCTTATATATACAATTTATTCCGG 57.463 33.333 0.00 0.00 0.00 5.14
403 405 9.765795 GCCTAAGAATCCGCTTATATATACAAT 57.234 33.333 0.00 0.00 30.56 2.71
404 406 8.202137 GGCCTAAGAATCCGCTTATATATACAA 58.798 37.037 0.00 0.00 30.56 2.41
405 407 7.343574 TGGCCTAAGAATCCGCTTATATATACA 59.656 37.037 3.32 0.00 30.56 2.29
406 408 7.723324 TGGCCTAAGAATCCGCTTATATATAC 58.277 38.462 3.32 0.00 30.56 1.47
407 409 7.907841 TGGCCTAAGAATCCGCTTATATATA 57.092 36.000 3.32 0.00 30.56 0.86
408 410 6.808321 TGGCCTAAGAATCCGCTTATATAT 57.192 37.500 3.32 0.00 30.56 0.86
409 411 6.808321 ATGGCCTAAGAATCCGCTTATATA 57.192 37.500 3.32 0.00 30.56 0.86
410 412 5.700402 ATGGCCTAAGAATCCGCTTATAT 57.300 39.130 3.32 0.00 30.56 0.86
411 413 6.614694 TTATGGCCTAAGAATCCGCTTATA 57.385 37.500 3.32 0.00 30.56 0.98
412 414 5.499004 TTATGGCCTAAGAATCCGCTTAT 57.501 39.130 3.32 0.00 30.56 1.73
413 415 4.967084 TTATGGCCTAAGAATCCGCTTA 57.033 40.909 3.32 0.00 0.00 3.09
414 416 3.857157 TTATGGCCTAAGAATCCGCTT 57.143 42.857 3.32 0.00 0.00 4.68
415 417 3.857157 TTTATGGCCTAAGAATCCGCT 57.143 42.857 3.32 0.00 0.00 5.52
416 418 4.321230 CCAATTTATGGCCTAAGAATCCGC 60.321 45.833 3.32 0.00 43.80 5.54
417 419 5.376854 CCAATTTATGGCCTAAGAATCCG 57.623 43.478 3.32 0.00 43.80 4.18
430 432 8.415553 TGCTTCCTTATTGTCATCCAATTTATG 58.584 33.333 0.00 0.00 41.01 1.90
431 433 8.537728 TGCTTCCTTATTGTCATCCAATTTAT 57.462 30.769 0.00 0.00 41.01 1.40
432 434 7.953005 TGCTTCCTTATTGTCATCCAATTTA 57.047 32.000 0.00 0.00 41.01 1.40
433 435 6.855763 TGCTTCCTTATTGTCATCCAATTT 57.144 33.333 0.00 0.00 41.01 1.82
434 436 6.855763 TTGCTTCCTTATTGTCATCCAATT 57.144 33.333 0.00 0.00 41.01 2.32
435 437 6.855763 TTTGCTTCCTTATTGTCATCCAAT 57.144 33.333 0.00 0.00 45.68 3.16
436 438 6.855763 ATTTGCTTCCTTATTGTCATCCAA 57.144 33.333 0.00 0.00 37.49 3.53
437 439 6.632909 CAATTTGCTTCCTTATTGTCATCCA 58.367 36.000 0.00 0.00 0.00 3.41
438 440 5.521372 GCAATTTGCTTCCTTATTGTCATCC 59.479 40.000 14.11 0.00 40.96 3.51
439 441 5.230726 CGCAATTTGCTTCCTTATTGTCATC 59.769 40.000 18.57 0.00 42.25 2.92
440 442 5.104374 CGCAATTTGCTTCCTTATTGTCAT 58.896 37.500 18.57 0.00 42.25 3.06
441 443 4.022416 ACGCAATTTGCTTCCTTATTGTCA 60.022 37.500 18.57 0.00 42.25 3.58
442 444 4.324402 CACGCAATTTGCTTCCTTATTGTC 59.676 41.667 18.57 0.00 42.25 3.18
443 445 4.236935 CACGCAATTTGCTTCCTTATTGT 58.763 39.130 18.57 3.72 42.25 2.71
444 446 3.613737 CCACGCAATTTGCTTCCTTATTG 59.386 43.478 18.57 3.12 42.25 1.90
454 456 0.669932 TTCCATGCCACGCAATTTGC 60.670 50.000 11.42 11.42 43.62 3.68
577 579 1.294780 CGCTGCCTGAGGAGTTTCT 59.705 57.895 0.65 0.00 0.00 2.52
596 598 5.350640 GCCGTTAGATTAGTATATGGTTGGC 59.649 44.000 0.00 0.00 0.00 4.52
597 599 6.698380 AGCCGTTAGATTAGTATATGGTTGG 58.302 40.000 0.00 0.00 0.00 3.77
598 600 8.603242 AAAGCCGTTAGATTAGTATATGGTTG 57.397 34.615 0.00 0.00 0.00 3.77
599 601 7.876582 GGAAAGCCGTTAGATTAGTATATGGTT 59.123 37.037 0.00 0.00 0.00 3.67
600 602 7.015877 TGGAAAGCCGTTAGATTAGTATATGGT 59.984 37.037 0.00 0.00 36.79 3.55
601 603 7.383687 TGGAAAGCCGTTAGATTAGTATATGG 58.616 38.462 0.00 0.00 36.79 2.74
602 604 8.873830 CATGGAAAGCCGTTAGATTAGTATATG 58.126 37.037 0.00 0.00 36.79 1.78
603 605 7.549488 GCATGGAAAGCCGTTAGATTAGTATAT 59.451 37.037 0.00 0.00 36.79 0.86
604 606 6.872020 GCATGGAAAGCCGTTAGATTAGTATA 59.128 38.462 0.00 0.00 36.79 1.47
605 607 5.701290 GCATGGAAAGCCGTTAGATTAGTAT 59.299 40.000 0.00 0.00 36.79 2.12
606 608 5.054477 GCATGGAAAGCCGTTAGATTAGTA 58.946 41.667 0.00 0.00 36.79 1.82
607 609 3.877508 GCATGGAAAGCCGTTAGATTAGT 59.122 43.478 0.00 0.00 36.79 2.24
608 610 4.130118 AGCATGGAAAGCCGTTAGATTAG 58.870 43.478 0.00 0.00 36.79 1.73
609 611 4.127171 GAGCATGGAAAGCCGTTAGATTA 58.873 43.478 0.00 0.00 36.79 1.75
610 612 2.945668 GAGCATGGAAAGCCGTTAGATT 59.054 45.455 0.00 0.00 36.79 2.40
611 613 2.171448 AGAGCATGGAAAGCCGTTAGAT 59.829 45.455 0.00 0.00 36.79 1.98
612 614 1.555075 AGAGCATGGAAAGCCGTTAGA 59.445 47.619 0.00 0.00 36.79 2.10
613 615 1.936547 GAGAGCATGGAAAGCCGTTAG 59.063 52.381 0.00 0.00 36.79 2.34
614 616 1.277842 TGAGAGCATGGAAAGCCGTTA 59.722 47.619 0.00 0.00 36.79 3.18
615 617 0.036732 TGAGAGCATGGAAAGCCGTT 59.963 50.000 0.00 0.00 36.79 4.44
616 618 0.254178 ATGAGAGCATGGAAAGCCGT 59.746 50.000 0.00 0.00 36.79 5.68
617 619 0.942962 GATGAGAGCATGGAAAGCCG 59.057 55.000 0.00 0.00 34.11 5.52
618 620 1.133853 AGGATGAGAGCATGGAAAGCC 60.134 52.381 0.00 0.00 34.11 4.35
647 650 6.459024 CGCTAGGGATAATATCAGAGTACTGC 60.459 46.154 0.00 0.00 43.17 4.40
662 665 4.680278 TTATTAGGGACCGCTAGGGATA 57.320 45.455 8.65 0.00 43.47 2.59
663 666 3.555117 TTATTAGGGACCGCTAGGGAT 57.445 47.619 8.65 0.00 43.47 3.85
664 667 3.333313 TTTATTAGGGACCGCTAGGGA 57.667 47.619 8.65 0.00 43.47 4.20
669 672 9.975218 AATTATGAATATTTATTAGGGACCGCT 57.025 29.630 0.00 0.00 0.00 5.52
689 692 9.678941 GCATGAATCATATCTATGGCAATTATG 57.321 33.333 0.00 0.00 34.50 1.90
720 734 5.911280 CACCTTGAAATACATGCGATGAATC 59.089 40.000 0.00 0.00 0.00 2.52
723 737 4.260985 ACACCTTGAAATACATGCGATGA 58.739 39.130 0.00 0.00 0.00 2.92
745 759 8.339344 ACTGACATATTTTCATGACACATGAA 57.661 30.769 18.95 18.95 36.37 2.57
747 761 7.754625 TGACTGACATATTTTCATGACACATG 58.245 34.615 0.00 5.51 0.00 3.21
769 783 9.722056 AGAATATTTCTGACGCATTTAAATGAC 57.278 29.630 28.33 18.60 38.91 3.06
829 843 6.554982 TGGCCTAAGAATCCGCTGATATATAT 59.445 38.462 3.32 0.00 0.00 0.86
837 851 2.839486 TATGGCCTAAGAATCCGCTG 57.161 50.000 3.32 0.00 0.00 5.18
880 899 7.681939 TTTCGAGCCTATCACAAATTTAACT 57.318 32.000 0.00 0.00 0.00 2.24
961 983 0.109597 GCTTGCCACCTTTCATCGTG 60.110 55.000 0.00 0.00 0.00 4.35
962 984 0.250901 AGCTTGCCACCTTTCATCGT 60.251 50.000 0.00 0.00 0.00 3.73
963 985 0.883833 AAGCTTGCCACCTTTCATCG 59.116 50.000 0.00 0.00 0.00 3.84
964 986 3.062042 CAAAAGCTTGCCACCTTTCATC 58.938 45.455 0.00 0.00 31.34 2.92
970 996 0.106015 ACTCCAAAAGCTTGCCACCT 60.106 50.000 0.00 0.00 0.00 4.00
972 998 0.032540 CCACTCCAAAAGCTTGCCAC 59.967 55.000 0.00 0.00 0.00 5.01
991 1017 6.538021 AGAACAAGATATGACATGAGAAGTGC 59.462 38.462 0.00 0.00 0.00 4.40
993 1019 7.925483 GCTAGAACAAGATATGACATGAGAAGT 59.075 37.037 0.00 0.00 0.00 3.01
1022 1048 7.175797 TGTAGTTCTTACATCTTCTCCTCTGA 58.824 38.462 0.00 0.00 37.35 3.27
1167 1196 9.288576 TGTTTGATTCATCTTCTTGTTAGACAT 57.711 29.630 0.00 0.00 0.00 3.06
1196 1228 3.425659 TCATAGACATCTCCTCCATCCG 58.574 50.000 0.00 0.00 0.00 4.18
1218 1250 4.022935 GGTTGAAGATTCACATCAGTGCAA 60.023 41.667 0.00 0.00 45.49 4.08
1223 1255 4.008330 AGCTGGTTGAAGATTCACATCAG 58.992 43.478 10.86 10.86 36.83 2.90
1299 1331 6.295462 GCCCCACTACGATTATAAATCTACCA 60.295 42.308 0.00 0.00 0.00 3.25
1320 1353 5.491323 AAAGCTATATCAGTAAGAGCCCC 57.509 43.478 0.00 0.00 33.50 5.80
1483 1517 4.744795 ATGATTCTCGCAACTAGAAGGT 57.255 40.909 0.00 0.00 36.46 3.50
1540 1578 6.071952 GGCTCCATCTATTTGACAAGAAAACA 60.072 38.462 0.00 0.00 0.00 2.83
1586 1625 9.880157 CATTTAGGAATGGAGATTTGACATTTT 57.120 29.630 0.00 0.00 39.17 1.82
1636 1675 2.023673 TCCAATTGGGCATTCGATGAC 58.976 47.619 24.29 0.00 37.65 3.06
1693 1732 4.818546 AGCATCAATATTGTGTCCTGCTAC 59.181 41.667 14.97 0.00 0.00 3.58
1888 1956 5.048782 TCGTCTTGCAAAGCATCATTTAAGT 60.049 36.000 0.00 0.00 45.70 2.24
1910 1998 6.223120 TGGTGACTCACATCCATATATTTCG 58.777 40.000 11.34 0.00 35.86 3.46
1911 1999 8.450578 TTTGGTGACTCACATCCATATATTTC 57.549 34.615 11.34 0.00 35.86 2.17
1933 2021 7.894376 ATGGATTGCTCAGTTTATTGTTTTG 57.106 32.000 0.00 0.00 0.00 2.44
1946 2034 8.694581 TTATGTGATATTGAATGGATTGCTCA 57.305 30.769 0.00 0.00 0.00 4.26
1961 2049 9.866655 TCCTTTGCTCCTAAATTTATGTGATAT 57.133 29.630 0.00 0.00 0.00 1.63
1967 2055 7.286316 AGGATGTCCTTTGCTCCTAAATTTATG 59.714 37.037 0.00 0.00 46.09 1.90
1969 2057 6.731467 AGGATGTCCTTTGCTCCTAAATTTA 58.269 36.000 0.00 0.00 46.09 1.40
1971 2059 5.198602 AGGATGTCCTTTGCTCCTAAATT 57.801 39.130 0.00 0.00 46.09 1.82
2053 5240 8.086522 AGTGTCGATACGCAGGTTATTATTTAT 58.913 33.333 6.66 0.00 38.65 1.40
2068 5255 3.127203 AGACTGGAAAGAGTGTCGATACG 59.873 47.826 6.66 0.00 34.92 3.06
2078 5265 4.686972 TCATTCGCATAGACTGGAAAGAG 58.313 43.478 0.00 0.00 31.26 2.85
2120 5307 4.401925 CCTTCAAGAGGTTTTGGAGACAT 58.598 43.478 0.00 0.00 39.75 3.06
2257 5452 4.385199 CCTGCCACCTACAATCCAGAATAA 60.385 45.833 0.00 0.00 0.00 1.40
2305 5501 2.157834 TTAATATAGCACGTGCCCCG 57.842 50.000 35.51 0.22 43.38 5.73
2321 5517 7.531857 TCACCTTTGGCTCATAAACATTTAA 57.468 32.000 0.00 0.00 0.00 1.52
2378 5574 6.038492 CCATTTGGCCCATTATCAATTTGAAC 59.962 38.462 0.00 0.00 0.00 3.18
2575 5787 7.334921 TGGCACACATGTTTACTATAGGTTAAC 59.665 37.037 4.43 0.00 37.78 2.01
2885 6102 8.164070 AGGAAACAACCTATCAACTCTGTTTAT 58.836 33.333 0.00 0.00 37.18 1.40
2889 6106 5.568620 AGGAAACAACCTATCAACTCTGT 57.431 39.130 0.00 0.00 38.65 3.41
2998 6215 6.100404 TGCCAGAATCAAAAGTGCTTTAAT 57.900 33.333 0.00 0.00 31.63 1.40
2999 6216 5.528043 TGCCAGAATCAAAAGTGCTTTAA 57.472 34.783 0.00 0.00 31.63 1.52
3055 6275 6.815089 ACTCATAGCAAGGACTAGAAATCAG 58.185 40.000 0.00 0.00 0.00 2.90
3066 6286 7.769044 GTCATAACCTTTTACTCATAGCAAGGA 59.231 37.037 3.26 0.00 37.93 3.36
3079 6299 9.638239 GCATGAATTTCTTGTCATAACCTTTTA 57.362 29.630 12.33 0.00 33.15 1.52
3129 6349 5.645624 TGGTGTAAAATTTCCATGCATACG 58.354 37.500 0.00 0.00 0.00 3.06
3164 6384 9.733556 TTCAGAACATGAAAGTAAAGGCTATAA 57.266 29.630 0.00 0.00 45.00 0.98
3205 6425 4.280929 GCTACCCACCAATTCTTTGTCTTT 59.719 41.667 0.00 0.00 0.00 2.52
3241 6461 5.044476 TGGCCAATATCCGATGGGTATATTT 60.044 40.000 0.61 0.00 37.19 1.40
3370 6590 3.228188 TGTCCTTCAGAGGCAAAATGT 57.772 42.857 0.00 0.00 43.21 2.71
3382 6602 1.250328 CTGCTTTGCCATGTCCTTCA 58.750 50.000 0.00 0.00 0.00 3.02
3446 6666 5.346281 CGACTCTGTTCTCATTTGGAGTAAC 59.654 44.000 0.00 0.00 44.40 2.50
3547 6767 1.338389 ACGAAATTACCTGGTCCACCG 60.338 52.381 0.63 4.86 39.43 4.94
3600 6820 4.696899 TGTCCAACTCGACAGTATAGTG 57.303 45.455 6.00 6.00 37.85 2.74
3608 6828 8.913487 TCTAGTAATATATGTCCAACTCGACA 57.087 34.615 0.00 0.00 46.36 4.35
3617 6837 7.969508 GCGAGGTCTTTCTAGTAATATATGTCC 59.030 40.741 0.00 0.00 0.00 4.02
3627 6847 1.456296 TGCGCGAGGTCTTTCTAGTA 58.544 50.000 12.10 0.00 0.00 1.82
3669 6889 9.253832 AGAGAGAGAGAGAGTATCAAAAATCAA 57.746 33.333 0.00 0.00 37.82 2.57
3682 7064 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3683 7065 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3684 7066 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3685 7067 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
3686 7068 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
3687 7069 5.136068 AGAGAGAGAGAGAGAGAGAGAGA 57.864 47.826 0.00 0.00 0.00 3.10
3688 7070 4.892345 TGAGAGAGAGAGAGAGAGAGAGAG 59.108 50.000 0.00 0.00 0.00 3.20
3689 7071 4.871822 TGAGAGAGAGAGAGAGAGAGAGA 58.128 47.826 0.00 0.00 0.00 3.10
3690 7072 5.128499 ACTTGAGAGAGAGAGAGAGAGAGAG 59.872 48.000 0.00 0.00 0.00 3.20
3691 7073 5.026121 ACTTGAGAGAGAGAGAGAGAGAGA 58.974 45.833 0.00 0.00 0.00 3.10
3692 7074 5.350504 ACTTGAGAGAGAGAGAGAGAGAG 57.649 47.826 0.00 0.00 0.00 3.20
3693 7075 5.491070 CAACTTGAGAGAGAGAGAGAGAGA 58.509 45.833 0.00 0.00 0.00 3.10
3694 7076 4.095483 GCAACTTGAGAGAGAGAGAGAGAG 59.905 50.000 0.00 0.00 0.00 3.20
3695 7077 4.009675 GCAACTTGAGAGAGAGAGAGAGA 58.990 47.826 0.00 0.00 0.00 3.10
3776 7158 5.059161 TGTTACATTGAGAGGATATGCAGC 58.941 41.667 0.00 0.00 0.00 5.25
3801 7183 7.080099 CGGTTAAAAATGGAGATGATATGCAG 58.920 38.462 0.00 0.00 0.00 4.41
3840 7222 1.914634 CACCGAACGGAGAGAGATTG 58.085 55.000 20.14 1.28 38.96 2.67
3851 7233 2.748461 TCTTTTGAAAGCACCGAACG 57.252 45.000 0.00 0.00 35.99 3.95
3921 7303 5.404466 AATTTGATTGGGTATGTGTGTGG 57.596 39.130 0.00 0.00 0.00 4.17
3925 7307 4.946646 AGGGAATTTGATTGGGTATGTGT 58.053 39.130 0.00 0.00 0.00 3.72
3969 7351 4.617253 ACTAGTTTGCTATGTGTGTGGA 57.383 40.909 0.00 0.00 0.00 4.02
3979 7362 4.275810 AGATCCGGTGTACTAGTTTGCTA 58.724 43.478 0.00 0.00 0.00 3.49
4012 7395 3.670377 GGGCTTGCCGTGTGTTCC 61.670 66.667 5.49 0.00 0.00 3.62
4013 7396 2.268076 ATGGGCTTGCCGTGTGTTC 61.268 57.895 5.49 0.00 0.00 3.18
4020 7403 1.321805 TGGATTTCATGGGCTTGCCG 61.322 55.000 5.49 0.00 0.00 5.69
4022 7405 0.896923 TGTGGATTTCATGGGCTTGC 59.103 50.000 0.00 0.00 0.00 4.01
4094 7477 1.458445 GAGAACTAACAAACGCGACCC 59.542 52.381 15.93 0.00 0.00 4.46
4109 7492 4.440880 CCTCATCACATCCTTGAGAGAAC 58.559 47.826 0.90 0.00 39.36 3.01
4164 7547 8.306038 ACAAATGTGATAATACTTGTGTTGCAT 58.694 29.630 0.00 0.00 0.00 3.96
4276 7659 6.322712 TGGTTATTGTCACAGCTAAAGGTTTT 59.677 34.615 0.00 0.00 0.00 2.43
4300 7683 8.752766 TTCTACGAGGATAGTACAAAGTTTTG 57.247 34.615 3.17 3.17 43.62 2.44
4317 7700 9.937175 AACTTCTTTTGAGAAAATTTCTACGAG 57.063 29.630 8.38 5.16 40.87 4.18
4371 7754 0.610232 GCCATGGTCAACTCCTGCTT 60.610 55.000 14.67 0.00 0.00 3.91
4389 7772 1.603172 CGACATCCAGGATACGAAGGC 60.603 57.143 18.08 1.59 46.39 4.35
4402 7785 1.365633 CTAGGCAGCCTCGACATCC 59.634 63.158 20.38 0.00 34.61 3.51
4403 7786 1.300542 GCTAGGCAGCCTCGACATC 60.301 63.158 20.38 0.00 42.37 3.06
4530 7913 2.000447 CGAACGTTCTTCCTCATTCCC 59.000 52.381 24.80 0.00 0.00 3.97
4536 7919 2.475487 CCTTTGTCGAACGTTCTTCCTC 59.525 50.000 24.80 11.20 0.00 3.71
4548 7931 1.996798 AGGTCAGACTCCTTTGTCGA 58.003 50.000 0.00 0.00 41.47 4.20
4549 7932 2.821991 AAGGTCAGACTCCTTTGTCG 57.178 50.000 0.00 0.00 41.86 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.