Multiple sequence alignment - TraesCS6D01G339200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G339200 chr6D 100.000 5846 0 0 1 5846 438896242 438890397 0.000000e+00 10796.0
1 TraesCS6D01G339200 chr6D 92.075 265 19 1 4285 4547 376379566 376379302 7.150000e-99 372.0
2 TraesCS6D01G339200 chr6D 84.887 311 33 9 5376 5673 412832636 412832327 9.520000e-78 302.0
3 TraesCS6D01G339200 chr6B 88.700 2062 166 35 575 2608 664221256 664219234 0.000000e+00 2455.0
4 TraesCS6D01G339200 chr6B 89.412 1700 104 28 2630 4287 664219255 664217590 0.000000e+00 2073.0
5 TraesCS6D01G339200 chr6B 88.235 595 32 15 4545 5135 664217591 664217031 0.000000e+00 676.0
6 TraesCS6D01G339200 chr6B 90.870 230 14 5 1 227 664221936 664221711 9.520000e-78 302.0
7 TraesCS6D01G339200 chr6B 88.211 246 25 2 5430 5673 664216697 664216454 2.060000e-74 291.0
8 TraesCS6D01G339200 chr6B 82.445 319 41 9 5366 5673 91852799 91852485 1.250000e-66 265.0
9 TraesCS6D01G339200 chr6B 90.395 177 15 2 5670 5844 664215188 664215012 1.270000e-56 231.0
10 TraesCS6D01G339200 chr6B 87.692 130 8 6 159 286 664221706 664221583 1.700000e-30 145.0
11 TraesCS6D01G339200 chr6A 90.277 1913 133 22 680 2584 587781959 587780092 0.000000e+00 2453.0
12 TraesCS6D01G339200 chr6A 90.421 1733 101 21 2606 4287 587780103 587778385 0.000000e+00 2220.0
13 TraesCS6D01G339200 chr6A 89.950 597 34 13 4545 5135 587778386 587777810 0.000000e+00 747.0
14 TraesCS6D01G339200 chr6A 92.664 259 17 1 4285 4541 505243328 505243586 7.150000e-99 372.0
15 TraesCS6D01G339200 chr6A 80.392 357 34 20 254 580 587782537 587782187 7.570000e-59 239.0
16 TraesCS6D01G339200 chr6A 93.233 133 5 2 1 132 587788711 587788582 5.980000e-45 193.0
17 TraesCS6D01G339200 chr6A 90.476 126 6 3 126 250 587782767 587782647 1.690000e-35 161.0
18 TraesCS6D01G339200 chr6A 87.931 58 3 2 5152 5205 587777762 587777705 1.360000e-06 65.8
19 TraesCS6D01G339200 chr5D 89.391 1018 85 8 2607 3622 439305377 439306373 0.000000e+00 1260.0
20 TraesCS6D01G339200 chr5D 87.131 474 42 11 2120 2582 439304920 439305385 2.410000e-143 520.0
21 TraesCS6D01G339200 chr1D 79.034 725 97 34 2659 3353 96702612 96701913 4.160000e-121 446.0
22 TraesCS6D01G339200 chr1D 92.771 83 6 0 3464 3546 96701814 96701732 2.860000e-23 121.0
23 TraesCS6D01G339200 chr2B 93.985 266 14 1 4282 4545 198355837 198356102 9.120000e-108 401.0
24 TraesCS6D01G339200 chr1A 94.253 261 13 1 4283 4541 510614372 510614632 1.180000e-106 398.0
25 TraesCS6D01G339200 chr1A 93.208 265 16 1 4285 4547 169651929 169652193 7.100000e-104 388.0
26 TraesCS6D01G339200 chr1A 90.614 277 22 3 4281 4553 499193061 499193337 1.200000e-96 364.0
27 TraesCS6D01G339200 chr1A 90.816 98 8 1 3464 3560 91412124 91412027 4.750000e-26 130.0
28 TraesCS6D01G339200 chr2A 93.561 264 15 1 4286 4547 766580734 766580471 5.490000e-105 392.0
29 TraesCS6D01G339200 chr4D 92.884 267 16 2 4285 4548 444245122 444245388 9.190000e-103 385.0
30 TraesCS6D01G339200 chr7D 93.411 258 15 1 4292 4547 580714455 580714198 1.190000e-101 381.0
31 TraesCS6D01G339200 chr1B 79.291 536 81 22 2656 3170 156686104 156686630 1.210000e-91 348.0
32 TraesCS6D01G339200 chr1B 84.762 210 22 6 2122 2331 566726769 566726570 9.930000e-48 202.0
33 TraesCS6D01G339200 chr3B 83.686 331 39 13 5361 5683 45274302 45273979 1.230000e-76 298.0
34 TraesCS6D01G339200 chr3B 83.388 307 36 13 5385 5683 45266881 45266582 2.680000e-68 270.0
35 TraesCS6D01G339200 chr3B 83.036 112 16 3 3509 3618 357683605 357683495 1.340000e-16 99.0
36 TraesCS6D01G339200 chrUn 83.838 297 35 11 5385 5673 380277406 380277697 2.680000e-68 270.0
37 TraesCS6D01G339200 chr3A 81.571 331 41 13 5363 5683 6239880 6240200 7.520000e-64 255.0
38 TraesCS6D01G339200 chr3A 80.997 321 43 13 5363 5673 3966971 3967283 7.570000e-59 239.0
39 TraesCS6D01G339200 chr3A 82.609 115 17 3 3506 3618 748417058 748417171 1.340000e-16 99.0
40 TraesCS6D01G339200 chr5A 81.646 316 44 12 5365 5672 108281911 108282220 3.500000e-62 250.0
41 TraesCS6D01G339200 chr5B 84.404 218 26 6 3034 3250 203374947 203375157 2.140000e-49 207.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G339200 chr6D 438890397 438896242 5845 True 10796.000000 10796 100.000000 1 5846 1 chr6D.!!$R3 5845
1 TraesCS6D01G339200 chr6B 664215012 664221936 6924 True 881.857143 2455 89.073571 1 5844 7 chr6B.!!$R2 5843
2 TraesCS6D01G339200 chr6A 587777705 587782767 5062 True 980.966667 2453 88.241167 126 5205 6 chr6A.!!$R2 5079
3 TraesCS6D01G339200 chr5D 439304920 439306373 1453 False 890.000000 1260 88.261000 2120 3622 2 chr5D.!!$F1 1502
4 TraesCS6D01G339200 chr1D 96701732 96702612 880 True 283.500000 446 85.902500 2659 3546 2 chr1D.!!$R1 887
5 TraesCS6D01G339200 chr1B 156686104 156686630 526 False 348.000000 348 79.291000 2656 3170 1 chr1B.!!$F1 514

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
350 540 0.249657 GGACCAGCGGCTCTATTGAG 60.250 60.000 0.0 0.0 42.96 3.02 F
699 1064 0.304098 TACGTGGGCGAAAACAAACG 59.696 50.000 0.0 0.0 42.00 3.60 F
1768 2165 0.033228 AGTATCTGCTCTGGCGATGC 59.967 55.000 0.0 0.0 42.25 3.91 F
2191 2588 0.474854 TGTTGTCCTTGCCTCCCCTA 60.475 55.000 0.0 0.0 0.00 3.53 F
2248 2645 1.202371 CGGCAATCGCTTCTGGTACTA 60.202 52.381 0.0 0.0 38.60 1.82 F
3425 3897 1.342819 GTTTGCCCACTGGTTTGCATA 59.657 47.619 0.0 0.0 33.08 3.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1425 1811 0.321346 TGAAGCAAGCGTCCTGATCA 59.679 50.000 5.57 0.00 0.00 2.92 R
2197 2594 0.402121 AGCTTGAACCCTTCCTGGAC 59.598 55.000 0.00 0.00 38.35 4.02 R
3030 3470 0.610174 TTGTAGCCTCCACTGCAGAG 59.390 55.000 23.35 13.32 33.65 3.35 R
3187 3627 0.753262 AACAGAGAGGTTGCTCGTGT 59.247 50.000 0.00 0.00 39.87 4.49 R
3588 4061 1.341852 ACAGCAATTGTCAATGCAGCA 59.658 42.857 16.92 0.00 44.95 4.41 R
5377 5957 0.516877 CGTTTGAGCTCGGATGCAAA 59.483 50.000 9.64 0.26 34.99 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 53 6.295719 AGGGAAAGAAGTTCGTACATACAT 57.704 37.500 0.00 0.00 37.08 2.29
114 118 6.704050 ACAAATTTTGTAAATGGTTCCTTCCG 59.296 34.615 12.98 0.00 43.27 4.30
120 124 2.845363 AATGGTTCCTTCCGTACGTT 57.155 45.000 15.21 0.00 0.00 3.99
123 127 3.025287 TGGTTCCTTCCGTACGTTTAC 57.975 47.619 15.21 3.42 0.00 2.01
138 142 8.434661 CCGTACGTTTACAACTATGTACATTTT 58.565 33.333 14.77 5.15 41.64 1.82
181 186 5.959527 CGATGTGATGTAACATTGTTAGTGC 59.040 40.000 9.49 3.20 40.87 4.40
219 224 7.624344 GCAGTCAGAAACAGTCCATATTTACAC 60.624 40.741 0.00 0.00 0.00 2.90
263 441 3.760684 GTGCAACTTGGATCAAATCTCCT 59.239 43.478 0.00 0.00 33.69 3.69
275 455 3.384789 TCAAATCTCCTGATCCGTCGAAT 59.615 43.478 0.00 0.00 31.51 3.34
295 485 3.814005 TCAGCCTAGTAATTCCGTTCC 57.186 47.619 0.00 0.00 0.00 3.62
297 487 3.773119 TCAGCCTAGTAATTCCGTTCCTT 59.227 43.478 0.00 0.00 0.00 3.36
298 488 3.871594 CAGCCTAGTAATTCCGTTCCTTG 59.128 47.826 0.00 0.00 0.00 3.61
321 511 5.088739 GGTCATGCACATTTTCTTTCGTAG 58.911 41.667 0.00 0.00 0.00 3.51
346 536 0.478942 TCTAGGACCAGCGGCTCTAT 59.521 55.000 0.00 0.00 0.00 1.98
348 538 1.000283 CTAGGACCAGCGGCTCTATTG 60.000 57.143 0.00 0.00 0.00 1.90
349 539 0.687757 AGGACCAGCGGCTCTATTGA 60.688 55.000 0.00 0.00 0.00 2.57
350 540 0.249657 GGACCAGCGGCTCTATTGAG 60.250 60.000 0.00 0.00 42.96 3.02
353 543 1.293924 CCAGCGGCTCTATTGAGTTG 58.706 55.000 0.00 0.51 42.13 3.16
357 547 2.159170 AGCGGCTCTATTGAGTTGACTC 60.159 50.000 0.00 4.20 42.13 3.36
366 556 7.588488 GCTCTATTGAGTTGACTCTCGTATTAC 59.412 40.741 12.00 0.00 43.25 1.89
369 559 3.027710 GAGTTGACTCTCGTATTACGCG 58.972 50.000 3.53 3.53 39.81 6.01
386 576 2.419324 ACGCGGTGAAGTTTAAACAACA 59.581 40.909 20.06 15.27 0.00 3.33
404 594 1.000283 ACACCTCTCAGCTCTTTCGTG 60.000 52.381 0.00 0.00 0.00 4.35
411 601 5.188327 TCTCAGCTCTTTCGTGGTATATG 57.812 43.478 0.00 0.00 0.00 1.78
437 627 5.596836 ATCTTTGCAAACTTTGACCAAGA 57.403 34.783 8.05 8.72 36.21 3.02
438 628 5.596836 TCTTTGCAAACTTTGACCAAGAT 57.403 34.783 8.05 0.00 36.21 2.40
439 629 5.350633 TCTTTGCAAACTTTGACCAAGATG 58.649 37.500 8.05 0.00 36.21 2.90
440 630 4.998671 TTGCAAACTTTGACCAAGATGA 57.001 36.364 5.65 0.00 36.21 2.92
441 631 5.534207 TTGCAAACTTTGACCAAGATGAT 57.466 34.783 5.65 0.00 36.21 2.45
446 638 6.971184 GCAAACTTTGACCAAGATGATCATAG 59.029 38.462 8.54 1.44 36.21 2.23
495 713 9.419297 ACATCATGAAGCATATTTTCATATTGC 57.581 29.630 0.00 0.00 41.91 3.56
502 720 8.955061 AAGCATATTTTCATATTGCGTATGTC 57.045 30.769 8.30 0.00 40.87 3.06
516 737 3.706698 CGTATGTCTGGTACTGTGGATG 58.293 50.000 0.00 0.00 0.00 3.51
564 786 6.479660 TGGTCAAATTTGCAAAGATTGACTTC 59.520 34.615 38.71 31.47 42.35 3.01
605 865 5.004726 GGCTGTTTTTAAAATGCGCTCATAG 59.995 40.000 9.73 0.00 31.46 2.23
606 866 5.572896 GCTGTTTTTAAAATGCGCTCATAGT 59.427 36.000 9.73 0.00 31.46 2.12
608 868 7.359181 GCTGTTTTTAAAATGCGCTCATAGTTT 60.359 33.333 9.73 2.18 31.46 2.66
609 869 8.359060 TGTTTTTAAAATGCGCTCATAGTTTT 57.641 26.923 9.73 8.81 31.46 2.43
678 938 7.280205 ACTTACGCCAGGTCTAAAAATAATCTG 59.720 37.037 0.00 0.00 0.00 2.90
685 1050 7.254455 CCAGGTCTAAAAATAATCTGCTACGTG 60.254 40.741 0.00 0.00 0.00 4.49
699 1064 0.304098 TACGTGGGCGAAAACAAACG 59.696 50.000 0.00 0.00 42.00 3.60
700 1065 1.352404 CGTGGGCGAAAACAAACGA 59.648 52.632 0.00 0.00 41.33 3.85
749 1114 3.626670 TCGCTCTTTCCCGTAAAACAAAA 59.373 39.130 0.00 0.00 0.00 2.44
817 1188 1.051812 CCTCCACGCTATCCATCCTT 58.948 55.000 0.00 0.00 0.00 3.36
818 1189 2.248248 CCTCCACGCTATCCATCCTTA 58.752 52.381 0.00 0.00 0.00 2.69
819 1190 2.232452 CCTCCACGCTATCCATCCTTAG 59.768 54.545 0.00 0.00 0.00 2.18
842 1215 0.940519 TAGTCCGGCGACAAACAACG 60.941 55.000 9.30 0.00 41.87 4.10
860 1233 4.785453 CTGCCCGCCCTCTCAACC 62.785 72.222 0.00 0.00 0.00 3.77
893 1266 2.308039 GCAACACGTCTCACCGACC 61.308 63.158 0.00 0.00 39.56 4.79
922 1296 2.121506 ACCACCATGACCCCACCT 60.122 61.111 0.00 0.00 0.00 4.00
934 1308 3.644606 CCACCTGCCAGCCTCAGT 61.645 66.667 0.00 0.00 0.00 3.41
935 1309 2.433446 CACCTGCCAGCCTCAGTT 59.567 61.111 0.00 0.00 0.00 3.16
937 1311 0.392193 CACCTGCCAGCCTCAGTTAG 60.392 60.000 0.00 0.00 0.00 2.34
941 1315 1.153549 GCCAGCCTCAGTTAGACGG 60.154 63.158 0.00 0.00 0.00 4.79
946 1320 1.591703 CCTCAGTTAGACGGCTGCA 59.408 57.895 0.00 0.00 33.09 4.41
951 1325 3.307906 TTAGACGGCTGCACGGGT 61.308 61.111 0.00 0.80 38.39 5.28
954 1328 2.825075 TAGACGGCTGCACGGGTAGA 62.825 60.000 7.06 0.00 38.39 2.59
958 1332 2.663196 GCTGCACGGGTAGACCTT 59.337 61.111 7.06 0.00 36.97 3.50
1008 1382 4.530857 CGGGGGAGGATGACGCAC 62.531 72.222 0.00 0.00 0.00 5.34
1139 1519 4.899239 CGCATCCACCTCCGCCTC 62.899 72.222 0.00 0.00 0.00 4.70
1140 1520 4.554036 GCATCCACCTCCGCCTCC 62.554 72.222 0.00 0.00 0.00 4.30
1141 1521 4.227134 CATCCACCTCCGCCTCCG 62.227 72.222 0.00 0.00 0.00 4.63
1246 1626 1.739196 TCGTCTCATCCGTCGTCGT 60.739 57.895 0.71 0.00 35.01 4.34
1247 1627 1.296722 CGTCTCATCCGTCGTCGTC 60.297 63.158 0.71 0.00 35.01 4.20
1248 1628 1.296722 GTCTCATCCGTCGTCGTCG 60.297 63.158 4.87 4.87 38.55 5.12
1383 1763 3.462678 GTCGAGCTCCCCCAGGTC 61.463 72.222 8.47 0.00 44.98 3.85
1384 1764 4.779733 TCGAGCTCCCCCAGGTCC 62.780 72.222 8.47 0.00 45.57 4.46
1425 1811 0.042448 GTTTTCGTGCGAGCGAGTTT 60.042 50.000 0.00 0.00 42.10 2.66
1447 1833 0.601046 TCAGGACGCTTGCTTCAGTG 60.601 55.000 1.76 0.00 0.00 3.66
1503 1889 1.543941 GCCGCGAGTCGATTGATCTG 61.544 60.000 18.61 0.00 41.67 2.90
1515 1901 5.746245 GTCGATTGATCTGGTCTAGACTTTG 59.254 44.000 21.88 12.22 38.49 2.77
1517 1903 3.895232 TGATCTGGTCTAGACTTTGGC 57.105 47.619 21.88 10.03 38.49 4.52
1591 1977 1.880027 GGAAAATCACTTGGACGCTGT 59.120 47.619 0.00 0.00 0.00 4.40
1593 1979 3.500680 GGAAAATCACTTGGACGCTGTTA 59.499 43.478 0.00 0.00 0.00 2.41
1594 1980 4.156008 GGAAAATCACTTGGACGCTGTTAT 59.844 41.667 0.00 0.00 0.00 1.89
1600 1986 2.424601 ACTTGGACGCTGTTATACGCTA 59.575 45.455 0.00 0.00 0.00 4.26
1645 2042 1.320555 CTTACAGTTGTCGCGAATCCG 59.679 52.381 12.06 0.68 39.16 4.18
1653 2050 1.278238 GTCGCGAATCCGTTGATCTT 58.722 50.000 12.06 0.00 38.24 2.40
1654 2051 2.159352 TGTCGCGAATCCGTTGATCTTA 60.159 45.455 12.06 0.00 38.24 2.10
1729 2126 5.885912 GCTTAGTGTTCTCCCATGGAAAATA 59.114 40.000 15.22 0.00 0.00 1.40
1730 2127 6.377146 GCTTAGTGTTCTCCCATGGAAAATAA 59.623 38.462 15.22 0.00 0.00 1.40
1768 2165 0.033228 AGTATCTGCTCTGGCGATGC 59.967 55.000 0.00 0.00 42.25 3.91
1825 2222 5.269189 TGTGTATCTTCCATGTCCTGTAGA 58.731 41.667 0.00 0.00 0.00 2.59
1836 2233 4.623932 TGTCCTGTAGATTGCTTTCACT 57.376 40.909 0.00 0.00 0.00 3.41
2067 2464 2.361737 GGCTTCAAGAGGGTGGCC 60.362 66.667 0.00 0.00 0.00 5.36
2190 2587 1.774217 TGTTGTCCTTGCCTCCCCT 60.774 57.895 0.00 0.00 0.00 4.79
2191 2588 0.474854 TGTTGTCCTTGCCTCCCCTA 60.475 55.000 0.00 0.00 0.00 3.53
2248 2645 1.202371 CGGCAATCGCTTCTGGTACTA 60.202 52.381 0.00 0.00 38.60 1.82
2251 2648 2.603560 GCAATCGCTTCTGGTACTACAC 59.396 50.000 0.00 0.00 34.30 2.90
2254 2651 5.736492 GCAATCGCTTCTGGTACTACACTAT 60.736 44.000 0.00 0.00 34.30 2.12
2255 2652 6.514541 GCAATCGCTTCTGGTACTACACTATA 60.515 42.308 0.00 0.00 34.30 1.31
2257 2654 5.678583 TCGCTTCTGGTACTACACTATACT 58.321 41.667 0.00 0.00 0.00 2.12
2258 2655 5.757320 TCGCTTCTGGTACTACACTATACTC 59.243 44.000 0.00 0.00 0.00 2.59
2259 2656 5.526479 CGCTTCTGGTACTACACTATACTCA 59.474 44.000 0.00 0.00 0.00 3.41
2331 2739 3.708403 TGATGCTGGATTGTCTTCTGT 57.292 42.857 0.00 0.00 0.00 3.41
2332 2740 4.025040 TGATGCTGGATTGTCTTCTGTT 57.975 40.909 0.00 0.00 0.00 3.16
2459 2867 2.091852 GTTCAGAGCTGGACCAGAAG 57.908 55.000 26.25 10.70 32.93 2.85
2584 2992 9.367160 TCAATCACAGAGTTCATAGATACCATA 57.633 33.333 0.00 0.00 0.00 2.74
2604 3012 8.481492 ACCATAATTTATCATTGCAATCCTGA 57.519 30.769 9.53 6.30 0.00 3.86
2605 3013 8.362639 ACCATAATTTATCATTGCAATCCTGAC 58.637 33.333 9.53 0.00 0.00 3.51
2606 3014 8.361889 CCATAATTTATCATTGCAATCCTGACA 58.638 33.333 9.53 0.00 0.00 3.58
2607 3015 9.923143 CATAATTTATCATTGCAATCCTGACAT 57.077 29.630 9.53 0.00 0.00 3.06
2610 3018 8.929260 ATTTATCATTGCAATCCTGACATAGA 57.071 30.769 9.53 0.63 0.00 1.98
2611 3019 8.929260 TTTATCATTGCAATCCTGACATAGAT 57.071 30.769 9.53 8.47 0.00 1.98
2613 3021 7.918536 ATCATTGCAATCCTGACATAGATAC 57.081 36.000 9.53 0.00 0.00 2.24
2614 3022 6.233434 TCATTGCAATCCTGACATAGATACC 58.767 40.000 9.53 0.00 0.00 2.73
2615 3023 4.257267 TGCAATCCTGACATAGATACCG 57.743 45.455 0.00 0.00 0.00 4.02
2616 3024 3.641436 TGCAATCCTGACATAGATACCGT 59.359 43.478 0.00 0.00 0.00 4.83
2617 3025 4.100963 TGCAATCCTGACATAGATACCGTT 59.899 41.667 0.00 0.00 0.00 4.44
2618 3026 5.303333 TGCAATCCTGACATAGATACCGTTA 59.697 40.000 0.00 0.00 0.00 3.18
2619 3027 6.183360 TGCAATCCTGACATAGATACCGTTAA 60.183 38.462 0.00 0.00 0.00 2.01
2620 3028 6.366332 GCAATCCTGACATAGATACCGTTAAG 59.634 42.308 0.00 0.00 0.00 1.85
2702 3110 4.082354 AGGCATCAAAGATTGCTTCTGAAC 60.082 41.667 0.00 0.00 38.88 3.18
2902 3310 4.096382 ACTTTTGACAGGTTTGTACAGCTG 59.904 41.667 13.48 13.48 45.99 4.24
2935 3360 6.499234 TGTGAGTTATTACAGTACTGCGTA 57.501 37.500 22.90 10.17 0.00 4.42
2954 3379 9.935241 ACTGCGTAGATATTTCATCTTCAATAT 57.065 29.630 7.78 0.00 0.00 1.28
2956 3381 8.659491 TGCGTAGATATTTCATCTTCAATATGC 58.341 33.333 0.00 0.00 0.00 3.14
2957 3382 8.119226 GCGTAGATATTTCATCTTCAATATGCC 58.881 37.037 0.00 0.00 0.00 4.40
2958 3383 9.376075 CGTAGATATTTCATCTTCAATATGCCT 57.624 33.333 0.00 0.00 0.00 4.75
3013 3453 9.988350 AATAATTGATGACTGCTAAACTTAACG 57.012 29.630 0.00 0.00 0.00 3.18
3030 3470 3.471495 AACGCTCGATTCACCAATTTC 57.529 42.857 0.00 0.00 0.00 2.17
3149 3589 3.574354 AAAGCTTTGGCCCAAATCAAA 57.426 38.095 11.80 0.00 39.73 2.69
3187 3627 8.921205 AGAGGTACTTCAGTTTTCAGTTACTTA 58.079 33.333 7.82 0.00 41.55 2.24
3190 3630 8.546244 GGTACTTCAGTTTTCAGTTACTTACAC 58.454 37.037 0.00 0.00 0.00 2.90
3202 3642 2.726832 ACTTACACGAGCAACCTCTC 57.273 50.000 0.00 0.00 35.90 3.20
3326 3779 3.695830 TTTGACTGCTTCTAACGGGAT 57.304 42.857 0.00 0.00 0.00 3.85
3350 3803 8.862325 ATGACAATTGAGGTATGTTTCTTGTA 57.138 30.769 13.59 0.00 0.00 2.41
3421 3893 3.665544 CAGTTTGCCCACTGGTTTG 57.334 52.632 4.74 0.00 40.60 2.93
3425 3897 1.342819 GTTTGCCCACTGGTTTGCATA 59.657 47.619 0.00 0.00 33.08 3.14
3432 3904 2.360483 CCACTGGTTTGCATACAACACA 59.640 45.455 9.57 1.25 34.87 3.72
3433 3905 3.005684 CCACTGGTTTGCATACAACACAT 59.994 43.478 9.57 0.00 34.87 3.21
3594 4067 5.963176 TCTGTTCATAGAATTTTGCTGCA 57.037 34.783 0.00 0.00 0.00 4.41
3600 4073 6.270156 TCATAGAATTTTGCTGCATTGACA 57.730 33.333 1.84 0.00 0.00 3.58
3639 4112 8.316640 ACTTTAAGCGGAATATCAATCAGATC 57.683 34.615 0.00 0.00 38.19 2.75
3645 4118 7.445121 AGCGGAATATCAATCAGATCTTGTTA 58.555 34.615 0.00 0.00 38.19 2.41
3668 4141 9.529325 GTTATTGTAGTTGTAGTGCTGATATGA 57.471 33.333 0.00 0.00 0.00 2.15
3682 4161 3.995048 CTGATATGATGCTGTAGTGCTGG 59.005 47.826 0.00 0.00 0.00 4.85
3688 4167 4.588899 TGATGCTGTAGTGCTGGTAAAAT 58.411 39.130 0.00 0.00 0.00 1.82
3692 4171 4.215399 TGCTGTAGTGCTGGTAAAATTCAC 59.785 41.667 0.00 0.00 0.00 3.18
3702 4181 6.183360 TGCTGGTAAAATTCACATCCTTGTTT 60.183 34.615 0.00 0.00 32.34 2.83
3714 4194 5.301045 CACATCCTTGTTTAGCATCATGGAT 59.699 40.000 0.00 0.00 44.10 3.41
3716 4196 7.176165 CACATCCTTGTTTAGCATCATGGATAT 59.824 37.037 10.64 0.42 42.59 1.63
3819 4309 6.585702 GCATTGCACTACATGACATAAACAAA 59.414 34.615 3.15 0.00 0.00 2.83
3820 4310 7.116090 GCATTGCACTACATGACATAAACAAAA 59.884 33.333 3.15 0.00 0.00 2.44
3903 4400 8.920509 TTAGTTTGCTTTGAACTTTTTACTCC 57.079 30.769 0.00 0.00 38.28 3.85
3904 4401 7.170393 AGTTTGCTTTGAACTTTTTACTCCT 57.830 32.000 0.00 0.00 33.76 3.69
3906 4403 7.545615 AGTTTGCTTTGAACTTTTTACTCCTTG 59.454 33.333 0.00 0.00 33.76 3.61
3919 4416 3.356529 ACTCCTTGGCCTTATGACTTG 57.643 47.619 3.32 0.00 0.00 3.16
3922 4419 2.843730 TCCTTGGCCTTATGACTTGCTA 59.156 45.455 3.32 0.00 0.00 3.49
3933 4430 9.442047 GCCTTATGACTTGCTATAATTATGACT 57.558 33.333 8.28 0.00 0.00 3.41
4023 4521 8.635765 TGGTAAGCTCAAACAAATATTCTCTT 57.364 30.769 0.00 0.00 0.00 2.85
4024 4522 8.730680 TGGTAAGCTCAAACAAATATTCTCTTC 58.269 33.333 0.00 0.00 0.00 2.87
4025 4523 8.951243 GGTAAGCTCAAACAAATATTCTCTTCT 58.049 33.333 0.00 0.00 0.00 2.85
4026 4524 9.980780 GTAAGCTCAAACAAATATTCTCTTCTC 57.019 33.333 0.00 0.00 0.00 2.87
4027 4525 8.627208 AAGCTCAAACAAATATTCTCTTCTCA 57.373 30.769 0.00 0.00 0.00 3.27
4028 4526 8.266392 AGCTCAAACAAATATTCTCTTCTCAG 57.734 34.615 0.00 0.00 0.00 3.35
4030 4528 7.383102 TCAAACAAATATTCTCTTCTCAGCC 57.617 36.000 0.00 0.00 0.00 4.85
4032 4530 7.448161 TCAAACAAATATTCTCTTCTCAGCCAA 59.552 33.333 0.00 0.00 0.00 4.52
4061 4575 7.348274 TCCAAGATGGAAATAGTGGAGTATTCT 59.652 37.037 0.00 0.00 45.00 2.40
4063 4577 7.682787 AGATGGAAATAGTGGAGTATTCTGT 57.317 36.000 0.00 0.00 0.00 3.41
4250 4764 4.608774 ACCGGTGGTCGACAGGGA 62.609 66.667 18.91 0.00 43.87 4.20
4290 4804 2.769893 TGTTCCTTAAACAGGTACGCC 58.230 47.619 0.00 0.00 44.32 5.68
4291 4805 2.079158 GTTCCTTAAACAGGTACGCCC 58.921 52.381 0.00 0.00 44.37 6.13
4292 4806 4.830971 TGTTCCTTAAACAGGTACGCCCT 61.831 47.826 0.00 0.00 44.32 5.19
4293 4807 1.551883 TCCTTAAACAGGTACGCCCTC 59.448 52.381 0.00 0.00 43.86 4.30
4294 4808 1.406477 CCTTAAACAGGTACGCCCTCC 60.406 57.143 0.00 0.00 43.86 4.30
4295 4809 0.247185 TTAAACAGGTACGCCCTCCG 59.753 55.000 0.00 0.00 43.86 4.63
4308 4822 3.868835 CGCCCTCCGTTTTTATTTATCG 58.131 45.455 0.00 0.00 0.00 2.92
4309 4823 3.624900 GCCCTCCGTTTTTATTTATCGC 58.375 45.455 0.00 0.00 0.00 4.58
4310 4824 3.847105 GCCCTCCGTTTTTATTTATCGCG 60.847 47.826 0.00 0.00 0.00 5.87
4311 4825 3.310501 CCCTCCGTTTTTATTTATCGCGT 59.689 43.478 5.77 0.00 0.00 6.01
4312 4826 4.507388 CCCTCCGTTTTTATTTATCGCGTA 59.493 41.667 5.77 0.00 0.00 4.42
4313 4827 5.178067 CCCTCCGTTTTTATTTATCGCGTAT 59.822 40.000 5.77 0.65 0.00 3.06
4314 4828 6.293027 CCCTCCGTTTTTATTTATCGCGTATT 60.293 38.462 5.77 0.00 0.00 1.89
4315 4829 7.095691 CCCTCCGTTTTTATTTATCGCGTATTA 60.096 37.037 5.77 0.00 0.00 0.98
4316 4830 7.948363 CCTCCGTTTTTATTTATCGCGTATTAG 59.052 37.037 5.77 0.00 0.00 1.73
4317 4831 7.282916 TCCGTTTTTATTTATCGCGTATTAGC 58.717 34.615 5.77 0.00 0.00 3.09
4318 4832 7.169645 TCCGTTTTTATTTATCGCGTATTAGCT 59.830 33.333 5.77 0.00 34.40 3.32
4319 4833 7.795272 CCGTTTTTATTTATCGCGTATTAGCTT 59.205 33.333 5.77 0.00 34.40 3.74
4320 4834 9.150653 CGTTTTTATTTATCGCGTATTAGCTTT 57.849 29.630 5.77 0.00 34.40 3.51
4322 4836 8.996988 TTTTATTTATCGCGTATTAGCTTTGG 57.003 30.769 5.77 0.00 34.40 3.28
4323 4837 7.718272 TTATTTATCGCGTATTAGCTTTGGT 57.282 32.000 5.77 0.00 34.40 3.67
4324 4838 5.646467 TTTATCGCGTATTAGCTTTGGTC 57.354 39.130 5.77 0.00 34.40 4.02
4325 4839 2.658373 TCGCGTATTAGCTTTGGTCA 57.342 45.000 5.77 0.00 34.40 4.02
4326 4840 2.962125 TCGCGTATTAGCTTTGGTCAA 58.038 42.857 5.77 0.00 34.40 3.18
4327 4841 3.327626 TCGCGTATTAGCTTTGGTCAAA 58.672 40.909 5.77 0.00 34.40 2.69
4340 4854 5.890334 CTTTGGTCAAAGTCAAGCTTTACA 58.110 37.500 13.07 0.00 44.95 2.41
4341 4855 5.906113 TTGGTCAAAGTCAAGCTTTACAA 57.094 34.783 13.07 0.00 44.95 2.41
4342 4856 5.906113 TGGTCAAAGTCAAGCTTTACAAA 57.094 34.783 13.07 0.00 44.95 2.83
4343 4857 6.463995 TGGTCAAAGTCAAGCTTTACAAAT 57.536 33.333 13.07 0.00 44.95 2.32
4344 4858 6.872920 TGGTCAAAGTCAAGCTTTACAAATT 58.127 32.000 13.07 2.76 44.95 1.82
4345 4859 7.327214 TGGTCAAAGTCAAGCTTTACAAATTT 58.673 30.769 13.07 2.67 44.95 1.82
4346 4860 7.821846 TGGTCAAAGTCAAGCTTTACAAATTTT 59.178 29.630 13.07 2.34 44.95 1.82
4347 4861 8.116136 GGTCAAAGTCAAGCTTTACAAATTTTG 58.884 33.333 13.07 13.14 44.95 2.44
4348 4862 8.868916 GTCAAAGTCAAGCTTTACAAATTTTGA 58.131 29.630 15.81 16.09 44.95 2.69
4349 4863 8.868916 TCAAAGTCAAGCTTTACAAATTTTGAC 58.131 29.630 15.81 16.10 44.95 3.18
4350 4864 7.770801 AAGTCAAGCTTTACAAATTTTGACC 57.229 32.000 15.81 0.01 39.43 4.02
4351 4865 6.872920 AGTCAAGCTTTACAAATTTTGACCA 58.127 32.000 15.81 0.00 39.43 4.02
4352 4866 7.327214 AGTCAAGCTTTACAAATTTTGACCAA 58.673 30.769 15.81 4.27 39.43 3.67
4353 4867 7.821846 AGTCAAGCTTTACAAATTTTGACCAAA 59.178 29.630 15.81 10.72 39.43 3.28
4354 4868 8.611757 GTCAAGCTTTACAAATTTTGACCAAAT 58.388 29.630 15.81 0.00 36.35 2.32
4355 4869 9.171877 TCAAGCTTTACAAATTTTGACCAAATT 57.828 25.926 15.81 1.83 45.50 1.82
4397 4911 9.593134 TGGCAAATACAATAACAAATCAATACC 57.407 29.630 0.00 0.00 0.00 2.73
4398 4912 9.593134 GGCAAATACAATAACAAATCAATACCA 57.407 29.630 0.00 0.00 0.00 3.25
4427 4941 6.951062 TTCATTGTTGAATGTACTTCCACA 57.049 33.333 0.00 1.71 40.09 4.17
4428 4942 7.523293 TTCATTGTTGAATGTACTTCCACAT 57.477 32.000 10.54 0.00 38.77 3.21
4429 4943 7.144722 TCATTGTTGAATGTACTTCCACATC 57.855 36.000 10.54 0.00 38.77 3.06
4430 4944 6.714356 TCATTGTTGAATGTACTTCCACATCA 59.286 34.615 10.54 0.00 38.77 3.07
4431 4945 7.394077 TCATTGTTGAATGTACTTCCACATCAT 59.606 33.333 10.54 3.59 38.77 2.45
4432 4946 8.676401 CATTGTTGAATGTACTTCCACATCATA 58.324 33.333 10.54 1.32 38.77 2.15
4433 4947 8.806429 TTGTTGAATGTACTTCCACATCATAT 57.194 30.769 10.54 0.00 38.77 1.78
4434 4948 9.898152 TTGTTGAATGTACTTCCACATCATATA 57.102 29.630 10.54 0.00 38.77 0.86
4435 4949 9.546428 TGTTGAATGTACTTCCACATCATATAG 57.454 33.333 0.00 0.00 38.19 1.31
4436 4950 9.764363 GTTGAATGTACTTCCACATCATATAGA 57.236 33.333 0.00 0.00 38.19 1.98
4484 4998 8.974060 TTCTGTTCTATAAACTTGGTCAAACT 57.026 30.769 0.00 0.00 0.00 2.66
4485 4999 8.974060 TCTGTTCTATAAACTTGGTCAAACTT 57.026 30.769 0.00 0.00 0.00 2.66
4486 5000 9.403583 TCTGTTCTATAAACTTGGTCAAACTTT 57.596 29.630 0.00 0.00 0.00 2.66
4519 5033 6.503616 GACTTCAGTCAACTCTAATATGCG 57.496 41.667 1.86 0.00 44.18 4.73
4520 5034 5.352284 ACTTCAGTCAACTCTAATATGCGG 58.648 41.667 0.00 0.00 0.00 5.69
4521 5035 5.127194 ACTTCAGTCAACTCTAATATGCGGA 59.873 40.000 0.00 0.00 0.00 5.54
4522 5036 5.188327 TCAGTCAACTCTAATATGCGGAG 57.812 43.478 0.00 0.00 0.00 4.63
4523 5037 4.645136 TCAGTCAACTCTAATATGCGGAGT 59.355 41.667 0.00 0.00 41.37 3.85
4524 5038 5.826208 TCAGTCAACTCTAATATGCGGAGTA 59.174 40.000 6.10 0.00 39.09 2.59
4525 5039 6.320418 TCAGTCAACTCTAATATGCGGAGTAA 59.680 38.462 6.10 0.00 39.09 2.24
4526 5040 6.978659 CAGTCAACTCTAATATGCGGAGTAAA 59.021 38.462 6.10 0.00 39.09 2.01
4527 5041 7.653713 CAGTCAACTCTAATATGCGGAGTAAAT 59.346 37.037 6.10 0.00 39.09 1.40
4528 5042 8.857098 AGTCAACTCTAATATGCGGAGTAAATA 58.143 33.333 6.10 0.00 39.09 1.40
4529 5043 9.472361 GTCAACTCTAATATGCGGAGTAAATAA 57.528 33.333 6.10 0.00 39.09 1.40
4538 5052 5.873179 TGCGGAGTAAATAAAAACAGAGG 57.127 39.130 0.00 0.00 0.00 3.69
4539 5053 4.698304 TGCGGAGTAAATAAAAACAGAGGG 59.302 41.667 0.00 0.00 0.00 4.30
4540 5054 4.939439 GCGGAGTAAATAAAAACAGAGGGA 59.061 41.667 0.00 0.00 0.00 4.20
4541 5055 5.413523 GCGGAGTAAATAAAAACAGAGGGAA 59.586 40.000 0.00 0.00 0.00 3.97
4542 5056 6.095021 GCGGAGTAAATAAAAACAGAGGGAAT 59.905 38.462 0.00 0.00 0.00 3.01
4543 5057 7.281549 GCGGAGTAAATAAAAACAGAGGGAATA 59.718 37.037 0.00 0.00 0.00 1.75
4581 5095 4.767409 GGCATTCTCAGTCCCTTAAAAACT 59.233 41.667 0.00 0.00 0.00 2.66
4598 5112 2.708386 ACTGTCGAGCTCACAAGTAC 57.292 50.000 15.40 2.28 0.00 2.73
4602 5116 4.459685 ACTGTCGAGCTCACAAGTACTAAT 59.540 41.667 15.40 0.00 0.00 1.73
4603 5117 5.646793 ACTGTCGAGCTCACAAGTACTAATA 59.353 40.000 15.40 0.00 0.00 0.98
4604 5118 6.150641 ACTGTCGAGCTCACAAGTACTAATAA 59.849 38.462 15.40 0.00 0.00 1.40
4607 5121 6.805271 GTCGAGCTCACAAGTACTAATAAACA 59.195 38.462 15.40 0.00 0.00 2.83
4647 5161 4.986034 TGCATTGAAAAAGAGAGTTGCATG 59.014 37.500 0.00 0.00 34.24 4.06
4653 5167 5.827797 TGAAAAAGAGAGTTGCATGGTACTT 59.172 36.000 0.00 0.00 0.00 2.24
4654 5168 5.948992 AAAAGAGAGTTGCATGGTACTTC 57.051 39.130 0.00 0.00 0.00 3.01
4655 5169 4.899352 AAGAGAGTTGCATGGTACTTCT 57.101 40.909 0.00 0.00 0.00 2.85
4663 5177 5.127356 AGTTGCATGGTACTTCTACTAGGTC 59.873 44.000 0.00 0.00 0.00 3.85
4682 5196 1.202330 CCAGTCTTCCTCTGGCAGAT 58.798 55.000 19.11 0.00 44.46 2.90
4810 5324 2.818274 GATTCGGCGTGTCCACCC 60.818 66.667 6.85 0.00 34.01 4.61
4849 5366 5.434408 TCAAGAACTCATCATCCTGAATGG 58.566 41.667 0.00 0.00 35.94 3.16
4881 5398 5.893255 CCCTGATTTCCATTGGTTCTGATAA 59.107 40.000 1.86 0.00 0.00 1.75
4882 5399 6.183360 CCCTGATTTCCATTGGTTCTGATAAC 60.183 42.308 1.86 0.00 0.00 1.89
4884 5401 7.093814 CCTGATTTCCATTGGTTCTGATAACAA 60.094 37.037 1.86 0.00 0.00 2.83
4885 5402 7.601856 TGATTTCCATTGGTTCTGATAACAAC 58.398 34.615 1.86 0.00 0.00 3.32
4886 5403 5.621197 TTCCATTGGTTCTGATAACAACG 57.379 39.130 1.86 0.00 0.00 4.10
4888 5405 3.427503 CCATTGGTTCTGATAACAACGCC 60.428 47.826 0.00 0.00 0.00 5.68
4889 5406 2.552599 TGGTTCTGATAACAACGCCA 57.447 45.000 0.00 0.00 0.00 5.69
4890 5407 2.422597 TGGTTCTGATAACAACGCCAG 58.577 47.619 0.00 0.00 0.00 4.85
4893 5410 3.585862 GTTCTGATAACAACGCCAGAGA 58.414 45.455 0.00 0.00 37.04 3.10
4895 5412 3.849911 TCTGATAACAACGCCAGAGAAG 58.150 45.455 0.00 0.00 32.51 2.85
4897 5414 2.565391 TGATAACAACGCCAGAGAAGGA 59.435 45.455 0.00 0.00 0.00 3.36
4898 5415 3.007506 TGATAACAACGCCAGAGAAGGAA 59.992 43.478 0.00 0.00 0.00 3.36
4899 5416 1.884235 AACAACGCCAGAGAAGGAAG 58.116 50.000 0.00 0.00 0.00 3.46
4900 5417 1.048601 ACAACGCCAGAGAAGGAAGA 58.951 50.000 0.00 0.00 0.00 2.87
4901 5418 1.416401 ACAACGCCAGAGAAGGAAGAA 59.584 47.619 0.00 0.00 0.00 2.52
4904 5421 3.208747 ACGCCAGAGAAGGAAGAAAAA 57.791 42.857 0.00 0.00 0.00 1.94
4906 5423 2.878406 CGCCAGAGAAGGAAGAAAAACA 59.122 45.455 0.00 0.00 0.00 2.83
4912 5429 4.819088 AGAGAAGGAAGAAAAACAGAGTGC 59.181 41.667 0.00 0.00 0.00 4.40
4985 5502 1.273606 CTGGCGTATGGACTATGGAGG 59.726 57.143 0.00 0.00 0.00 4.30
5028 5545 7.004555 AGGGTTTCATGGAGGAAAATAAAAC 57.995 36.000 0.00 0.00 38.41 2.43
5029 5546 6.556874 AGGGTTTCATGGAGGAAAATAAAACA 59.443 34.615 0.00 0.00 38.41 2.83
5030 5547 6.873605 GGGTTTCATGGAGGAAAATAAAACAG 59.126 38.462 0.00 0.00 38.41 3.16
5031 5548 7.256154 GGGTTTCATGGAGGAAAATAAAACAGA 60.256 37.037 0.00 0.00 38.41 3.41
5032 5549 8.147704 GGTTTCATGGAGGAAAATAAAACAGAA 58.852 33.333 0.00 0.00 38.41 3.02
5033 5550 9.710900 GTTTCATGGAGGAAAATAAAACAGAAT 57.289 29.630 0.00 0.00 38.41 2.40
5103 5620 3.115554 GTTTTCATGTTGTGCCTGTGAC 58.884 45.455 0.00 0.00 0.00 3.67
5108 5626 1.526917 GTTGTGCCTGTGACTGGCT 60.527 57.895 29.37 0.00 46.43 4.75
5117 5635 0.529773 TGTGACTGGCTCGTGTTGTC 60.530 55.000 0.00 0.00 0.00 3.18
5123 5641 2.288579 ACTGGCTCGTGTTGTCGAATTA 60.289 45.455 0.00 0.00 39.34 1.40
5135 5653 3.567530 TGTCGAATTATGTCGTGTCGTT 58.432 40.909 0.00 0.00 41.80 3.85
5136 5654 3.982701 TGTCGAATTATGTCGTGTCGTTT 59.017 39.130 0.00 0.00 41.80 3.60
5137 5655 4.445052 TGTCGAATTATGTCGTGTCGTTTT 59.555 37.500 0.00 0.00 41.80 2.43
5138 5656 4.774549 GTCGAATTATGTCGTGTCGTTTTG 59.225 41.667 0.00 0.00 41.80 2.44
5139 5657 4.079028 CGAATTATGTCGTGTCGTTTTGG 58.921 43.478 0.00 0.00 36.26 3.28
5140 5658 2.953640 TTATGTCGTGTCGTTTTGGC 57.046 45.000 0.00 0.00 0.00 4.52
5141 5659 2.157834 TATGTCGTGTCGTTTTGGCT 57.842 45.000 0.00 0.00 0.00 4.75
5142 5660 0.865769 ATGTCGTGTCGTTTTGGCTC 59.134 50.000 0.00 0.00 0.00 4.70
5143 5661 1.200839 GTCGTGTCGTTTTGGCTCG 59.799 57.895 0.00 0.00 0.00 5.03
5145 5663 1.083657 CGTGTCGTTTTGGCTCGTG 60.084 57.895 0.00 0.00 0.00 4.35
5146 5664 1.758319 CGTGTCGTTTTGGCTCGTGT 61.758 55.000 0.00 0.00 0.00 4.49
5149 5667 0.653636 GTCGTTTTGGCTCGTGTTGA 59.346 50.000 0.00 0.00 0.00 3.18
5150 5668 1.062880 GTCGTTTTGGCTCGTGTTGAA 59.937 47.619 0.00 0.00 0.00 2.69
5194 5747 0.398318 AGCACCACTGAGAAGAACCC 59.602 55.000 0.00 0.00 0.00 4.11
5223 5801 9.099454 GTAGATTTAGATTTGTTGGACCAGTAG 57.901 37.037 0.00 0.00 0.00 2.57
5229 5807 6.126409 AGATTTGTTGGACCAGTAGTTTTGA 58.874 36.000 0.00 0.00 0.00 2.69
5234 5812 3.674997 TGGACCAGTAGTTTTGATGCTC 58.325 45.455 0.00 0.00 0.00 4.26
5251 5829 1.798813 GCTCGGTTCAGTTGGTAGTTG 59.201 52.381 0.00 0.00 0.00 3.16
5253 5831 1.764134 TCGGTTCAGTTGGTAGTTGGT 59.236 47.619 0.00 0.00 0.00 3.67
5260 5838 5.571784 TCAGTTGGTAGTTGGTAGTATCG 57.428 43.478 0.00 0.00 0.00 2.92
5276 5854 1.790755 ATCGTCTGCACAAGCGTTTA 58.209 45.000 0.00 0.00 46.23 2.01
5277 5855 1.136690 TCGTCTGCACAAGCGTTTAG 58.863 50.000 0.00 0.00 46.23 1.85
5278 5856 1.136690 CGTCTGCACAAGCGTTTAGA 58.863 50.000 0.00 0.00 46.23 2.10
5279 5857 1.726791 CGTCTGCACAAGCGTTTAGAT 59.273 47.619 0.00 0.00 46.23 1.98
5281 5859 3.722082 CGTCTGCACAAGCGTTTAGATTC 60.722 47.826 0.00 0.00 46.23 2.52
5282 5860 3.433615 GTCTGCACAAGCGTTTAGATTCT 59.566 43.478 0.00 0.00 46.23 2.40
5283 5861 3.433274 TCTGCACAAGCGTTTAGATTCTG 59.567 43.478 0.00 0.00 46.23 3.02
5284 5862 3.138304 TGCACAAGCGTTTAGATTCTGT 58.862 40.909 0.00 0.00 46.23 3.41
5285 5863 3.563808 TGCACAAGCGTTTAGATTCTGTT 59.436 39.130 0.00 0.00 46.23 3.16
5286 5864 4.151798 GCACAAGCGTTTAGATTCTGTTC 58.848 43.478 0.00 0.00 0.00 3.18
5287 5865 4.712763 CACAAGCGTTTAGATTCTGTTCC 58.287 43.478 0.00 0.00 0.00 3.62
5297 5876 7.464178 CGTTTAGATTCTGTTCCGAATGGTTAG 60.464 40.741 0.00 0.00 33.96 2.34
5300 5879 2.542550 TCTGTTCCGAATGGTTAGGGA 58.457 47.619 0.00 0.00 36.30 4.20
5301 5880 3.112263 TCTGTTCCGAATGGTTAGGGAT 58.888 45.455 0.00 0.00 36.30 3.85
5338 5918 4.301072 TGGAGATGGAGTTAAAACCCTG 57.699 45.455 0.00 0.00 0.00 4.45
5342 5922 5.538813 GGAGATGGAGTTAAAACCCTGTTTT 59.461 40.000 9.60 9.60 0.00 2.43
5349 5929 6.127281 GGAGTTAAAACCCTGTTTTGGAAAGA 60.127 38.462 13.62 0.00 0.00 2.52
5350 5930 6.636705 AGTTAAAACCCTGTTTTGGAAAGAC 58.363 36.000 13.62 4.83 0.00 3.01
5351 5931 3.793797 AAACCCTGTTTTGGAAAGACG 57.206 42.857 0.00 0.00 0.00 4.18
5352 5932 1.687563 ACCCTGTTTTGGAAAGACGG 58.312 50.000 0.00 0.00 0.00 4.79
5353 5933 1.213430 ACCCTGTTTTGGAAAGACGGA 59.787 47.619 0.00 0.00 0.00 4.69
5354 5934 2.158519 ACCCTGTTTTGGAAAGACGGAT 60.159 45.455 0.00 0.00 0.00 4.18
5355 5935 2.228822 CCCTGTTTTGGAAAGACGGATG 59.771 50.000 0.00 0.00 0.00 3.51
5356 5936 2.228822 CCTGTTTTGGAAAGACGGATGG 59.771 50.000 0.00 0.00 0.00 3.51
5357 5937 3.146066 CTGTTTTGGAAAGACGGATGGA 58.854 45.455 0.00 0.00 0.00 3.41
5358 5938 3.758554 CTGTTTTGGAAAGACGGATGGAT 59.241 43.478 0.00 0.00 0.00 3.41
5359 5939 3.756434 TGTTTTGGAAAGACGGATGGATC 59.244 43.478 0.00 0.00 0.00 3.36
5360 5940 3.712016 TTTGGAAAGACGGATGGATCA 57.288 42.857 0.00 0.00 0.00 2.92
5361 5941 3.712016 TTGGAAAGACGGATGGATCAA 57.288 42.857 0.00 0.00 0.00 2.57
5362 5942 3.931907 TGGAAAGACGGATGGATCAAT 57.068 42.857 0.00 0.00 0.00 2.57
5363 5943 5.366482 TTGGAAAGACGGATGGATCAATA 57.634 39.130 0.00 0.00 0.00 1.90
5364 5944 5.567037 TGGAAAGACGGATGGATCAATAT 57.433 39.130 0.00 0.00 0.00 1.28
5365 5945 5.308014 TGGAAAGACGGATGGATCAATATG 58.692 41.667 0.00 0.00 0.00 1.78
5366 5946 4.697352 GGAAAGACGGATGGATCAATATGG 59.303 45.833 0.00 0.00 0.00 2.74
5367 5947 5.513094 GGAAAGACGGATGGATCAATATGGA 60.513 44.000 0.00 0.00 0.00 3.41
5368 5948 5.768980 AAGACGGATGGATCAATATGGAT 57.231 39.130 0.00 0.00 0.00 3.41
5369 5949 5.095145 AGACGGATGGATCAATATGGATG 57.905 43.478 0.00 0.00 0.00 3.51
5370 5950 4.533707 AGACGGATGGATCAATATGGATGT 59.466 41.667 0.00 0.00 0.00 3.06
5371 5951 4.582869 ACGGATGGATCAATATGGATGTG 58.417 43.478 0.00 0.00 0.00 3.21
5372 5952 3.943381 CGGATGGATCAATATGGATGTGG 59.057 47.826 0.00 0.00 0.00 4.17
5373 5953 4.323715 CGGATGGATCAATATGGATGTGGA 60.324 45.833 0.00 0.00 0.00 4.02
5374 5954 5.191426 GGATGGATCAATATGGATGTGGAG 58.809 45.833 0.00 0.00 0.00 3.86
5375 5955 5.280882 GGATGGATCAATATGGATGTGGAGT 60.281 44.000 0.00 0.00 0.00 3.85
5376 5956 6.070021 GGATGGATCAATATGGATGTGGAGTA 60.070 42.308 0.00 0.00 0.00 2.59
5377 5957 6.957853 TGGATCAATATGGATGTGGAGTAT 57.042 37.500 0.00 0.00 0.00 2.12
5378 5958 7.333779 TGGATCAATATGGATGTGGAGTATT 57.666 36.000 0.00 0.00 0.00 1.89
5381 5961 6.882610 TCAATATGGATGTGGAGTATTTGC 57.117 37.500 0.00 0.00 0.00 3.68
5384 5964 7.175467 TCAATATGGATGTGGAGTATTTGCATC 59.825 37.037 0.00 0.00 36.25 3.91
5387 5967 3.466836 GATGTGGAGTATTTGCATCCGA 58.533 45.455 0.00 0.00 35.78 4.55
5395 5975 2.927553 ATTTGCATCCGAGCTCAAAC 57.072 45.000 15.40 0.00 32.17 2.93
5409 5989 0.934496 TCAAACGCTCTTGGTGAACG 59.066 50.000 0.00 0.00 39.84 3.95
5418 5998 3.424433 GCTCTTGGTGAACGGTAAAATCG 60.424 47.826 0.00 0.00 0.00 3.34
5419 5999 3.068560 TCTTGGTGAACGGTAAAATCGG 58.931 45.455 0.00 0.00 0.00 4.18
5420 6000 1.810959 TGGTGAACGGTAAAATCGGG 58.189 50.000 0.00 0.00 0.00 5.14
5421 6001 1.089112 GGTGAACGGTAAAATCGGGG 58.911 55.000 0.00 0.00 0.00 5.73
5424 6017 2.813172 GTGAACGGTAAAATCGGGGAAA 59.187 45.455 0.00 0.00 0.00 3.13
5426 6019 3.252944 TGAACGGTAAAATCGGGGAAAAC 59.747 43.478 0.00 0.00 0.00 2.43
5428 6021 2.815503 ACGGTAAAATCGGGGAAAACAG 59.184 45.455 0.00 0.00 0.00 3.16
5434 6027 7.208777 GGTAAAATCGGGGAAAACAGTAAAAA 58.791 34.615 0.00 0.00 0.00 1.94
5488 6081 5.047872 TGACAAATGTTCTATGTGCTTGCAT 60.048 36.000 0.00 0.00 0.00 3.96
5489 6082 5.786311 ACAAATGTTCTATGTGCTTGCATT 58.214 33.333 0.00 0.00 0.00 3.56
5490 6083 6.225318 ACAAATGTTCTATGTGCTTGCATTT 58.775 32.000 0.00 0.00 36.06 2.32
5491 6084 7.377398 ACAAATGTTCTATGTGCTTGCATTTA 58.623 30.769 0.00 0.00 34.57 1.40
5497 6090 9.734620 TGTTCTATGTGCTTGCATTTATTTATC 57.265 29.630 0.00 0.00 0.00 1.75
5503 6096 8.410030 TGTGCTTGCATTTATTTATCATGAAC 57.590 30.769 0.00 0.00 0.00 3.18
5519 6114 3.040147 TGAACGAACATTCCTGAGTCC 57.960 47.619 0.00 0.00 0.00 3.85
5523 6118 1.276421 CGAACATTCCTGAGTCCTGGT 59.724 52.381 0.00 0.00 33.58 4.00
5620 6215 7.376866 GCCATGACTTATACAAATGTCATTTCG 59.623 37.037 7.87 6.94 44.62 3.46
5624 6219 9.161629 TGACTTATACAAATGTCATTTCGTGAT 57.838 29.630 7.87 2.80 39.48 3.06
5639 6234 4.326413 TCGTGATGAAAATCTTGAAGCG 57.674 40.909 0.00 0.00 0.00 4.68
5663 6258 7.112984 GCGTAGAAAACATTTGTCAAAGGTTAG 59.887 37.037 24.12 14.09 43.69 2.34
5666 6261 6.756542 AGAAAACATTTGTCAAAGGTTAGCAC 59.243 34.615 24.12 16.23 43.69 4.40
5692 7556 4.510038 AAGCTCACAATTGATGGTTGAC 57.490 40.909 13.59 0.86 0.00 3.18
5700 7564 8.815141 TCACAATTGATGGTTGACTTTAAATG 57.185 30.769 13.59 0.00 0.00 2.32
5723 7587 3.366719 GTTGCTGCAAGACTTCACTTTC 58.633 45.455 16.53 0.00 34.07 2.62
5787 7651 7.649533 TCTGGTATTTACACCTCGAAGAATA 57.350 36.000 0.00 0.00 39.50 1.75
5793 7657 9.754382 GTATTTACACCTCGAAGAATATACCAA 57.246 33.333 0.00 0.00 34.09 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 0.529337 CCTATGGACAGTGAGCAGCG 60.529 60.000 0.00 0.00 0.00 5.18
79 83 5.957910 TTACAAAATTTGTTTGTCGCCAG 57.042 34.783 16.99 0.00 42.22 4.85
82 86 6.710611 ACCATTTACAAAATTTGTTTGTCGC 58.289 32.000 16.99 0.00 42.22 5.19
88 92 7.225734 CGGAAGGAACCATTTACAAAATTTGTT 59.774 33.333 16.99 0.00 42.22 2.83
120 124 9.290988 ACACATGGAAAATGTACATAGTTGTAA 57.709 29.630 9.21 0.00 39.96 2.41
123 127 6.960992 CGACACATGGAAAATGTACATAGTTG 59.039 38.462 9.21 4.50 0.00 3.16
138 142 1.790755 GTACAACAGCGACACATGGA 58.209 50.000 0.00 0.00 0.00 3.41
179 184 5.977489 TCTGACTGCTTAGTTTAGTAGCA 57.023 39.130 0.00 0.00 42.22 3.49
180 185 6.645415 TGTTTCTGACTGCTTAGTTTAGTAGC 59.355 38.462 0.00 0.00 31.84 3.58
181 186 7.868415 ACTGTTTCTGACTGCTTAGTTTAGTAG 59.132 37.037 0.00 0.00 34.47 2.57
239 311 4.159135 GGAGATTTGATCCAAGTTGCACAT 59.841 41.667 0.00 0.00 36.79 3.21
254 326 2.871182 TCGACGGATCAGGAGATTTG 57.129 50.000 0.00 0.00 33.72 2.32
263 441 1.609072 CTAGGCTGATTCGACGGATCA 59.391 52.381 17.72 17.72 0.00 2.92
268 448 3.982058 GGAATTACTAGGCTGATTCGACG 59.018 47.826 0.00 0.00 31.03 5.12
275 455 3.371965 AGGAACGGAATTACTAGGCTGA 58.628 45.455 0.00 0.00 25.01 4.26
295 485 4.383649 CGAAAGAAAATGTGCATGACCAAG 59.616 41.667 0.00 0.00 0.00 3.61
297 487 3.317711 ACGAAAGAAAATGTGCATGACCA 59.682 39.130 0.00 0.00 0.00 4.02
298 488 3.900941 ACGAAAGAAAATGTGCATGACC 58.099 40.909 0.00 0.00 0.00 4.02
321 511 1.365633 CGCTGGTCCTAGATGCTCC 59.634 63.158 0.00 0.00 0.00 4.70
346 536 4.409570 GCGTAATACGAGAGTCAACTCAA 58.590 43.478 17.71 0.00 46.05 3.02
348 538 3.027710 CGCGTAATACGAGAGTCAACTC 58.972 50.000 17.71 1.79 46.05 3.01
349 539 2.223203 CCGCGTAATACGAGAGTCAACT 60.223 50.000 17.71 0.00 46.05 3.16
350 540 2.107178 CCGCGTAATACGAGAGTCAAC 58.893 52.381 17.71 0.00 46.05 3.18
353 543 1.328680 TCACCGCGTAATACGAGAGTC 59.671 52.381 17.71 0.00 46.05 3.36
357 547 2.184385 ACTTCACCGCGTAATACGAG 57.816 50.000 17.71 13.45 46.05 4.18
366 556 2.779471 GTGTTGTTTAAACTTCACCGCG 59.221 45.455 23.08 0.00 32.03 6.46
369 559 5.355910 TGAGAGGTGTTGTTTAAACTTCACC 59.644 40.000 32.89 32.89 44.82 4.02
386 576 0.605589 CCACGAAAGAGCTGAGAGGT 59.394 55.000 0.00 0.00 0.00 3.85
404 594 8.863049 CAAAGTTTGCAAAGATTGACATATACC 58.137 33.333 23.09 5.16 0.00 2.73
411 601 5.108517 TGGTCAAAGTTTGCAAAGATTGAC 58.891 37.500 35.03 35.03 40.42 3.18
441 631 9.350951 TCTGGACGTAGATATTTTTCTCTATGA 57.649 33.333 5.95 0.00 35.48 2.15
446 638 9.915629 ATGTATCTGGACGTAGATATTTTTCTC 57.084 33.333 10.47 0.00 40.64 2.87
461 653 7.918536 AATATGCTTCATGATGTATCTGGAC 57.081 36.000 14.12 0.00 0.00 4.02
495 713 3.706698 CATCCACAGTACCAGACATACG 58.293 50.000 0.00 0.00 0.00 3.06
502 720 7.094634 GGAAATTATATGCATCCACAGTACCAG 60.095 40.741 0.19 0.00 0.00 4.00
516 737 9.343539 ACCAAGTTTAGAGAGGAAATTATATGC 57.656 33.333 0.00 0.00 0.00 3.14
564 786 8.891671 AAAACAGCCTGCATAAATATTTATGG 57.108 30.769 33.72 24.39 46.27 2.74
574 796 5.119898 CGCATTTTAAAAACAGCCTGCATAA 59.880 36.000 17.47 0.00 0.00 1.90
578 800 2.411418 GCGCATTTTAAAAACAGCCTGC 60.411 45.455 0.30 8.14 0.00 4.85
579 801 3.059166 AGCGCATTTTAAAAACAGCCTG 58.941 40.909 11.47 0.00 0.00 4.85
580 802 3.243704 TGAGCGCATTTTAAAAACAGCCT 60.244 39.130 11.47 8.74 0.00 4.58
581 803 3.056304 TGAGCGCATTTTAAAAACAGCC 58.944 40.909 11.47 5.83 0.00 4.85
618 878 2.425312 TGACTCTCGCTCTCTCCATTTC 59.575 50.000 0.00 0.00 0.00 2.17
634 894 2.152830 AGTGAGAGTACCGTGTGACTC 58.847 52.381 0.00 0.00 42.06 3.36
678 938 0.308376 TTTGTTTTCGCCCACGTAGC 59.692 50.000 0.00 0.00 41.18 3.58
685 1050 1.711824 CGAAATCGTTTGTTTTCGCCC 59.288 47.619 5.06 0.00 45.05 6.13
726 1091 2.409975 TGTTTTACGGGAAAGAGCGAG 58.590 47.619 0.00 0.00 0.00 5.03
749 1114 3.888930 TCTTTTCATTGGCTCCGTTCTTT 59.111 39.130 0.00 0.00 0.00 2.52
765 1136 2.356069 GGAATGGATGGAGCGTCTTTTC 59.644 50.000 0.00 0.00 0.00 2.29
875 1248 3.231501 GTCGGTGAGACGTGTTGC 58.768 61.111 0.00 0.00 40.43 4.17
911 1284 4.052518 GCTGGCAGGTGGGGTCAT 62.053 66.667 17.64 0.00 0.00 3.06
922 1296 1.591703 CGTCTAACTGAGGCTGGCA 59.408 57.895 3.38 0.00 0.00 4.92
934 1308 1.940883 CTACCCGTGCAGCCGTCTAA 61.941 60.000 0.00 0.00 0.00 2.10
935 1309 2.361483 TACCCGTGCAGCCGTCTA 60.361 61.111 0.00 0.00 0.00 2.59
937 1311 3.755628 TCTACCCGTGCAGCCGTC 61.756 66.667 0.00 0.00 0.00 4.79
941 1315 1.448013 GAAGGTCTACCCGTGCAGC 60.448 63.158 0.00 0.00 38.74 5.25
946 1320 2.674380 ACGCGAAGGTCTACCCGT 60.674 61.111 15.93 0.00 38.74 5.28
994 1368 2.782222 TAGCGTGCGTCATCCTCCC 61.782 63.158 0.00 0.00 0.00 4.30
995 1369 1.589196 GTAGCGTGCGTCATCCTCC 60.589 63.158 0.00 0.00 0.00 4.30
1031 1405 2.675772 GTCGGGTCGGTCTCCAGT 60.676 66.667 0.00 0.00 0.00 4.00
1032 1406 3.450115 GGTCGGGTCGGTCTCCAG 61.450 72.222 0.00 0.00 0.00 3.86
1036 1410 4.437587 ATCGGGTCGGGTCGGTCT 62.438 66.667 0.00 0.00 0.00 3.85
1037 1411 3.897320 GATCGGGTCGGGTCGGTC 61.897 72.222 0.00 0.00 0.00 4.79
1078 1452 1.038280 GGGGCGAGGTATATATCGGG 58.962 60.000 7.63 0.00 39.31 5.14
1400 1780 1.860078 CTCGCACGAAAACAGGGAC 59.140 57.895 0.00 0.00 0.00 4.46
1425 1811 0.321346 TGAAGCAAGCGTCCTGATCA 59.679 50.000 5.57 0.00 0.00 2.92
1468 1854 1.439679 CGGCAACTGAAAGGACTACC 58.560 55.000 0.00 0.00 39.30 3.18
1503 1889 3.944015 TCGTACTAGCCAAAGTCTAGACC 59.056 47.826 19.38 3.64 37.53 3.85
1515 1901 0.860618 CGTCAGCGTTCGTACTAGCC 60.861 60.000 0.00 0.00 0.00 3.93
1517 1903 1.851295 GCTCGTCAGCGTTCGTACTAG 60.851 57.143 0.00 0.00 35.39 2.57
1591 1977 9.212641 CCTACTACTACTGATGTTAGCGTATAA 57.787 37.037 0.00 0.00 0.00 0.98
1593 1979 7.448420 TCCTACTACTACTGATGTTAGCGTAT 58.552 38.462 0.00 0.00 0.00 3.06
1594 1980 6.820335 TCCTACTACTACTGATGTTAGCGTA 58.180 40.000 0.00 0.00 0.00 4.42
1600 1986 7.127647 AGGACTACTCCTACTACTACTGATGTT 59.872 40.741 0.00 0.00 46.16 2.71
1670 2067 3.062639 AGCAGTTCATCAGCGTTTATTCG 59.937 43.478 0.00 0.00 33.71 3.34
1679 2076 2.402305 CCGATCTAGCAGTTCATCAGC 58.598 52.381 0.00 0.00 0.00 4.26
1748 2145 1.934399 GCATCGCCAGAGCAGATACTC 60.934 57.143 0.00 0.00 39.83 2.59
1825 2222 4.098914 TGTCCTTACCAGTGAAAGCAAT 57.901 40.909 0.00 0.00 0.00 3.56
1836 2233 3.181479 CGGAGAATTCGATGTCCTTACCA 60.181 47.826 9.17 0.00 42.19 3.25
2197 2594 0.402121 AGCTTGAACCCTTCCTGGAC 59.598 55.000 0.00 0.00 38.35 4.02
2288 2686 6.543465 TCAAGTCAATGCCTTCCATAACTATG 59.457 38.462 0.00 0.00 32.67 2.23
2303 2701 4.398358 AGACAATCCAGCATCAAGTCAATG 59.602 41.667 0.00 0.00 0.00 2.82
2304 2712 4.597004 AGACAATCCAGCATCAAGTCAAT 58.403 39.130 0.00 0.00 0.00 2.57
2331 2739 5.226396 CACGGTTCCTGCAATTCAAATAAA 58.774 37.500 0.00 0.00 0.00 1.40
2332 2740 4.804108 CACGGTTCCTGCAATTCAAATAA 58.196 39.130 0.00 0.00 0.00 1.40
2459 2867 8.443953 AGGAAAGATCATTCACATACTTAAGC 57.556 34.615 12.40 0.00 0.00 3.09
2584 2992 9.358406 TCTATGTCAGGATTGCAATGATAAATT 57.642 29.630 18.59 0.00 0.00 1.82
2587 2995 9.440773 GTATCTATGTCAGGATTGCAATGATAA 57.559 33.333 18.59 3.20 0.00 1.75
2588 2996 8.043113 GGTATCTATGTCAGGATTGCAATGATA 58.957 37.037 18.59 8.57 0.00 2.15
2589 2997 6.883217 GGTATCTATGTCAGGATTGCAATGAT 59.117 38.462 18.59 11.88 0.00 2.45
2590 2998 6.233434 GGTATCTATGTCAGGATTGCAATGA 58.767 40.000 18.59 6.92 0.00 2.57
2591 2999 5.121298 CGGTATCTATGTCAGGATTGCAATG 59.879 44.000 18.59 4.15 0.00 2.82
2592 3000 5.221722 ACGGTATCTATGTCAGGATTGCAAT 60.222 40.000 12.83 12.83 0.00 3.56
2593 3001 4.100963 ACGGTATCTATGTCAGGATTGCAA 59.899 41.667 0.00 0.00 0.00 4.08
2594 3002 3.641436 ACGGTATCTATGTCAGGATTGCA 59.359 43.478 0.00 0.00 0.00 4.08
2595 3003 4.258702 ACGGTATCTATGTCAGGATTGC 57.741 45.455 0.00 0.00 0.00 3.56
2596 3004 7.658261 TCTTAACGGTATCTATGTCAGGATTG 58.342 38.462 0.00 0.00 0.00 2.67
2597 3005 7.834881 TCTTAACGGTATCTATGTCAGGATT 57.165 36.000 0.00 0.00 0.00 3.01
2598 3006 7.451877 ACATCTTAACGGTATCTATGTCAGGAT 59.548 37.037 0.00 0.00 0.00 3.24
2599 3007 6.776116 ACATCTTAACGGTATCTATGTCAGGA 59.224 38.462 0.00 0.00 0.00 3.86
2600 3008 6.982852 ACATCTTAACGGTATCTATGTCAGG 58.017 40.000 0.00 0.00 0.00 3.86
2601 3009 8.873215 AAACATCTTAACGGTATCTATGTCAG 57.127 34.615 4.05 0.00 0.00 3.51
2628 3036 6.041637 AGCATGTCAGGATTGCAATGATAAAT 59.958 34.615 18.59 3.03 38.84 1.40
2932 3357 9.376075 AGGCATATTGAAGATGAAATATCTACG 57.624 33.333 3.66 0.00 28.65 3.51
2935 3360 9.584008 ACAAGGCATATTGAAGATGAAATATCT 57.416 29.630 3.66 0.00 34.20 1.98
2954 3379 0.983467 TCTACCAGCATGACAAGGCA 59.017 50.000 0.00 0.00 39.69 4.75
2955 3380 2.113860 TTCTACCAGCATGACAAGGC 57.886 50.000 0.00 0.00 39.69 4.35
2956 3381 2.357009 GCATTCTACCAGCATGACAAGG 59.643 50.000 0.00 0.00 39.69 3.61
2957 3382 3.011818 TGCATTCTACCAGCATGACAAG 58.988 45.455 0.00 0.00 39.69 3.16
2958 3383 3.011818 CTGCATTCTACCAGCATGACAA 58.988 45.455 0.00 0.00 39.69 3.18
3006 3446 2.736144 TGGTGAATCGAGCGTTAAGT 57.264 45.000 0.00 0.00 0.00 2.24
3013 3453 3.486542 GCAGAGAAATTGGTGAATCGAGC 60.487 47.826 0.00 0.00 0.00 5.03
3030 3470 0.610174 TTGTAGCCTCCACTGCAGAG 59.390 55.000 23.35 13.32 33.65 3.35
3187 3627 0.753262 AACAGAGAGGTTGCTCGTGT 59.247 50.000 0.00 0.00 39.87 4.49
3190 3630 3.430218 CACTAAAACAGAGAGGTTGCTCG 59.570 47.826 0.00 0.00 39.87 5.03
3229 3682 7.054124 ACAATAAAGTGAACCTGTGAGAAAGA 58.946 34.615 0.00 0.00 0.00 2.52
3326 3779 8.684386 TTACAAGAAACATACCTCAATTGTCA 57.316 30.769 5.13 0.00 32.38 3.58
3421 3893 7.063191 TGTGCAAATGAATAATGTGTTGTATGC 59.937 33.333 0.00 0.00 0.00 3.14
3425 3897 7.966246 AATGTGCAAATGAATAATGTGTTGT 57.034 28.000 0.00 0.00 0.00 3.32
3582 4054 4.849383 GCAATTGTCAATGCAGCAAAATTC 59.151 37.500 7.40 0.00 42.12 2.17
3588 4061 1.341852 ACAGCAATTGTCAATGCAGCA 59.658 42.857 16.92 0.00 44.95 4.41
3600 4073 6.016610 TCCGCTTAAAGTTTTCTACAGCAATT 60.017 34.615 0.00 0.00 0.00 2.32
3639 4112 7.652300 TCAGCACTACAACTACAATAACAAG 57.348 36.000 0.00 0.00 0.00 3.16
3645 4118 7.172190 GCATCATATCAGCACTACAACTACAAT 59.828 37.037 0.00 0.00 0.00 2.71
3657 4130 3.186001 GCACTACAGCATCATATCAGCAC 59.814 47.826 0.00 0.00 0.00 4.40
3668 4141 5.009631 TGAATTTTACCAGCACTACAGCAT 58.990 37.500 0.00 0.00 36.85 3.79
3682 4161 8.986477 ATGCTAAACAAGGATGTGAATTTTAC 57.014 30.769 0.00 0.00 40.46 2.01
3688 4167 5.125900 CCATGATGCTAAACAAGGATGTGAA 59.874 40.000 0.00 0.00 40.46 3.18
3692 4171 7.698506 ATATCCATGATGCTAAACAAGGATG 57.301 36.000 12.18 0.00 42.15 3.51
3716 4196 8.742777 TCTAAGTAGACCGAGCAAATAAAGTAA 58.257 33.333 0.00 0.00 0.00 2.24
3901 4398 1.635487 AGCAAGTCATAAGGCCAAGGA 59.365 47.619 5.01 0.00 0.00 3.36
3903 4400 7.516198 AATTATAGCAAGTCATAAGGCCAAG 57.484 36.000 5.01 0.00 0.00 3.61
3904 4401 9.013229 CATAATTATAGCAAGTCATAAGGCCAA 57.987 33.333 5.01 0.00 0.00 4.52
3906 4403 8.669243 GTCATAATTATAGCAAGTCATAAGGCC 58.331 37.037 0.00 0.00 0.00 5.19
4019 4516 2.847327 TGGAAGTTGGCTGAGAAGAG 57.153 50.000 0.00 0.00 0.00 2.85
4023 4521 2.290514 CCATCTTGGAAGTTGGCTGAGA 60.291 50.000 4.00 0.00 40.96 3.27
4024 4522 2.089980 CCATCTTGGAAGTTGGCTGAG 58.910 52.381 4.00 0.00 40.96 3.35
4025 4523 1.704628 TCCATCTTGGAAGTTGGCTGA 59.295 47.619 10.51 0.00 45.00 4.26
4026 4524 2.205022 TCCATCTTGGAAGTTGGCTG 57.795 50.000 10.51 0.00 45.00 4.85
4061 4575 6.538945 TGTCCATTAGTATGCAAGACTACA 57.461 37.500 10.52 6.11 0.00 2.74
4063 4577 7.069950 AGACATGTCCATTAGTATGCAAGACTA 59.930 37.037 22.21 7.56 0.00 2.59
4250 4764 4.479993 GCAGCGGTGATGGAGCCT 62.480 66.667 20.69 0.00 0.00 4.58
4285 4799 4.507388 CGATAAATAAAAACGGAGGGCGTA 59.493 41.667 0.00 0.00 0.00 4.42
4286 4800 3.310501 CGATAAATAAAAACGGAGGGCGT 59.689 43.478 0.00 0.00 0.00 5.68
4287 4801 3.847105 GCGATAAATAAAAACGGAGGGCG 60.847 47.826 0.00 0.00 0.00 6.13
4288 4802 3.624900 GCGATAAATAAAAACGGAGGGC 58.375 45.455 0.00 0.00 0.00 5.19
4289 4803 3.310501 ACGCGATAAATAAAAACGGAGGG 59.689 43.478 15.93 0.00 0.00 4.30
4290 4804 4.525411 ACGCGATAAATAAAAACGGAGG 57.475 40.909 15.93 0.00 0.00 4.30
4291 4805 7.473411 GCTAATACGCGATAAATAAAAACGGAG 59.527 37.037 15.93 0.00 0.00 4.63
4292 4806 7.169645 AGCTAATACGCGATAAATAAAAACGGA 59.830 33.333 15.93 0.00 34.40 4.69
4293 4807 7.285788 AGCTAATACGCGATAAATAAAAACGG 58.714 34.615 15.93 0.00 34.40 4.44
4294 4808 8.689737 AAGCTAATACGCGATAAATAAAAACG 57.310 30.769 15.93 0.00 34.40 3.60
4296 4810 9.440784 CCAAAGCTAATACGCGATAAATAAAAA 57.559 29.630 15.93 0.00 34.40 1.94
4297 4811 8.614346 ACCAAAGCTAATACGCGATAAATAAAA 58.386 29.630 15.93 0.00 34.40 1.52
4298 4812 8.145316 ACCAAAGCTAATACGCGATAAATAAA 57.855 30.769 15.93 0.00 34.40 1.40
4299 4813 7.438757 TGACCAAAGCTAATACGCGATAAATAA 59.561 33.333 15.93 0.00 34.40 1.40
4300 4814 6.924612 TGACCAAAGCTAATACGCGATAAATA 59.075 34.615 15.93 0.00 34.40 1.40
4301 4815 5.756347 TGACCAAAGCTAATACGCGATAAAT 59.244 36.000 15.93 0.00 34.40 1.40
4302 4816 5.110598 TGACCAAAGCTAATACGCGATAAA 58.889 37.500 15.93 0.00 34.40 1.40
4303 4817 4.684877 TGACCAAAGCTAATACGCGATAA 58.315 39.130 15.93 0.00 34.40 1.75
4304 4818 4.310357 TGACCAAAGCTAATACGCGATA 57.690 40.909 15.93 1.22 34.40 2.92
4305 4819 3.173668 TGACCAAAGCTAATACGCGAT 57.826 42.857 15.93 0.13 34.40 4.58
4306 4820 2.658373 TGACCAAAGCTAATACGCGA 57.342 45.000 15.93 0.00 34.40 5.87
4307 4821 3.670203 CTTTGACCAAAGCTAATACGCG 58.330 45.455 3.53 3.53 40.94 6.01
4326 4840 7.327214 TGGTCAAAATTTGTAAAGCTTGACTT 58.673 30.769 15.19 0.00 40.12 3.01
4327 4841 6.872920 TGGTCAAAATTTGTAAAGCTTGACT 58.127 32.000 15.19 0.00 40.12 3.41
4328 4842 7.532682 TTGGTCAAAATTTGTAAAGCTTGAC 57.467 32.000 7.04 7.04 39.84 3.18
4329 4843 8.729805 ATTTGGTCAAAATTTGTAAAGCTTGA 57.270 26.923 0.00 0.00 34.72 3.02
4371 4885 9.593134 GGTATTGATTTGTTATTGTATTTGCCA 57.407 29.630 0.00 0.00 0.00 4.92
4372 4886 9.593134 TGGTATTGATTTGTTATTGTATTTGCC 57.407 29.630 0.00 0.00 0.00 4.52
4404 4918 6.951062 TGTGGAAGTACATTCAACAATGAA 57.049 33.333 10.88 0.00 46.75 2.57
4410 4924 9.764363 TCTATATGATGTGGAAGTACATTCAAC 57.236 33.333 0.00 0.95 41.15 3.18
4458 4972 9.574516 AGTTTGACCAAGTTTATAGAACAGAAT 57.425 29.630 0.00 0.00 0.00 2.40
4459 4973 8.974060 AGTTTGACCAAGTTTATAGAACAGAA 57.026 30.769 0.00 0.00 0.00 3.02
4460 4974 8.974060 AAGTTTGACCAAGTTTATAGAACAGA 57.026 30.769 0.00 0.00 0.00 3.41
4467 4981 9.856162 ACTTCCTAAAGTTTGACCAAGTTTATA 57.144 29.630 0.00 0.00 43.28 0.98
4468 4982 8.762481 ACTTCCTAAAGTTTGACCAAGTTTAT 57.238 30.769 0.00 0.00 43.28 1.40
4496 5010 5.460419 CCGCATATTAGAGTTGACTGAAGTC 59.540 44.000 3.41 3.41 44.97 3.01
4497 5011 5.127194 TCCGCATATTAGAGTTGACTGAAGT 59.873 40.000 0.00 0.00 0.00 3.01
4498 5012 5.592054 TCCGCATATTAGAGTTGACTGAAG 58.408 41.667 0.00 0.00 0.00 3.02
4499 5013 5.127194 ACTCCGCATATTAGAGTTGACTGAA 59.873 40.000 0.00 0.00 37.60 3.02
4500 5014 4.645136 ACTCCGCATATTAGAGTTGACTGA 59.355 41.667 0.00 0.00 37.60 3.41
4501 5015 4.938080 ACTCCGCATATTAGAGTTGACTG 58.062 43.478 0.00 0.00 37.60 3.51
4502 5016 6.710597 TTACTCCGCATATTAGAGTTGACT 57.289 37.500 4.78 0.00 41.09 3.41
4503 5017 7.948278 ATTTACTCCGCATATTAGAGTTGAC 57.052 36.000 4.78 0.00 41.09 3.18
4512 5026 8.621286 CCTCTGTTTTTATTTACTCCGCATATT 58.379 33.333 0.00 0.00 0.00 1.28
4513 5027 7.228706 CCCTCTGTTTTTATTTACTCCGCATAT 59.771 37.037 0.00 0.00 0.00 1.78
4514 5028 6.540914 CCCTCTGTTTTTATTTACTCCGCATA 59.459 38.462 0.00 0.00 0.00 3.14
4515 5029 5.357032 CCCTCTGTTTTTATTTACTCCGCAT 59.643 40.000 0.00 0.00 0.00 4.73
4516 5030 4.698304 CCCTCTGTTTTTATTTACTCCGCA 59.302 41.667 0.00 0.00 0.00 5.69
4517 5031 4.939439 TCCCTCTGTTTTTATTTACTCCGC 59.061 41.667 0.00 0.00 0.00 5.54
4518 5032 7.625828 ATTCCCTCTGTTTTTATTTACTCCG 57.374 36.000 0.00 0.00 0.00 4.63
4528 5042 9.732130 GAGATGCTATATATTCCCTCTGTTTTT 57.268 33.333 0.00 0.00 0.00 1.94
4529 5043 9.110382 AGAGATGCTATATATTCCCTCTGTTTT 57.890 33.333 0.00 0.00 0.00 2.43
4530 5044 8.677870 AGAGATGCTATATATTCCCTCTGTTT 57.322 34.615 0.00 0.00 0.00 2.83
4531 5045 8.677870 AAGAGATGCTATATATTCCCTCTGTT 57.322 34.615 0.00 0.00 31.03 3.16
4532 5046 8.538701 CAAAGAGATGCTATATATTCCCTCTGT 58.461 37.037 0.00 0.00 31.03 3.41
4533 5047 7.986320 CCAAAGAGATGCTATATATTCCCTCTG 59.014 40.741 0.00 0.00 31.03 3.35
4534 5048 7.365473 GCCAAAGAGATGCTATATATTCCCTCT 60.365 40.741 0.00 0.00 0.00 3.69
4535 5049 6.765512 GCCAAAGAGATGCTATATATTCCCTC 59.234 42.308 0.00 0.00 0.00 4.30
4536 5050 6.216251 TGCCAAAGAGATGCTATATATTCCCT 59.784 38.462 0.00 0.00 0.00 4.20
4537 5051 6.418101 TGCCAAAGAGATGCTATATATTCCC 58.582 40.000 0.00 0.00 0.00 3.97
4538 5052 8.517062 AATGCCAAAGAGATGCTATATATTCC 57.483 34.615 0.00 0.00 0.00 3.01
4539 5053 9.393512 AGAATGCCAAAGAGATGCTATATATTC 57.606 33.333 0.00 0.00 0.00 1.75
4540 5054 9.393512 GAGAATGCCAAAGAGATGCTATATATT 57.606 33.333 0.00 0.00 0.00 1.28
4541 5055 8.546322 TGAGAATGCCAAAGAGATGCTATATAT 58.454 33.333 0.00 0.00 0.00 0.86
4542 5056 7.910584 TGAGAATGCCAAAGAGATGCTATATA 58.089 34.615 0.00 0.00 0.00 0.86
4543 5057 6.776744 TGAGAATGCCAAAGAGATGCTATAT 58.223 36.000 0.00 0.00 0.00 0.86
4581 5095 6.505044 TTATTAGTACTTGTGAGCTCGACA 57.495 37.500 9.64 11.64 0.00 4.35
4598 5112 9.206870 ACAAATGTGGATGCTTTTGTTTATTAG 57.793 29.630 7.37 0.00 41.07 1.73
4602 5116 5.236047 GCACAAATGTGGATGCTTTTGTTTA 59.764 36.000 14.85 0.00 45.72 2.01
4603 5117 4.035441 GCACAAATGTGGATGCTTTTGTTT 59.965 37.500 14.85 0.00 45.72 2.83
4604 5118 3.560896 GCACAAATGTGGATGCTTTTGTT 59.439 39.130 14.85 0.00 45.72 2.83
4607 5121 3.472283 TGCACAAATGTGGATGCTTTT 57.528 38.095 14.85 0.00 45.72 2.27
4647 5161 5.114764 AGACTGGACCTAGTAGAAGTACC 57.885 47.826 0.00 0.00 0.00 3.34
4653 5167 4.080243 CAGAGGAAGACTGGACCTAGTAGA 60.080 50.000 0.00 0.00 33.89 2.59
4654 5168 4.204012 CAGAGGAAGACTGGACCTAGTAG 58.796 52.174 0.00 0.00 33.89 2.57
4655 5169 4.237976 CAGAGGAAGACTGGACCTAGTA 57.762 50.000 0.00 0.00 33.89 1.82
4682 5196 6.045318 GCAAGCATATTAGAGTTCTGTCAGA 58.955 40.000 0.00 0.00 0.00 3.27
4810 5324 2.055689 TTGAGCACCCACTCCACCAG 62.056 60.000 0.00 0.00 35.72 4.00
4824 5338 4.134379 TCAGGATGATGAGTTCTTGAGC 57.866 45.455 0.00 0.00 42.56 4.26
4881 5398 1.048601 TCTTCCTTCTCTGGCGTTGT 58.951 50.000 0.00 0.00 0.00 3.32
4882 5399 2.169832 TTCTTCCTTCTCTGGCGTTG 57.830 50.000 0.00 0.00 0.00 4.10
4884 5401 2.879026 GTTTTTCTTCCTTCTCTGGCGT 59.121 45.455 0.00 0.00 0.00 5.68
4885 5402 2.878406 TGTTTTTCTTCCTTCTCTGGCG 59.122 45.455 0.00 0.00 0.00 5.69
4886 5403 4.137543 TCTGTTTTTCTTCCTTCTCTGGC 58.862 43.478 0.00 0.00 0.00 4.85
4888 5405 5.277731 GCACTCTGTTTTTCTTCCTTCTCTG 60.278 44.000 0.00 0.00 0.00 3.35
4889 5406 4.819088 GCACTCTGTTTTTCTTCCTTCTCT 59.181 41.667 0.00 0.00 0.00 3.10
4890 5407 4.819088 AGCACTCTGTTTTTCTTCCTTCTC 59.181 41.667 0.00 0.00 0.00 2.87
4893 5410 4.907879 CAGCACTCTGTTTTTCTTCCTT 57.092 40.909 0.00 0.00 35.61 3.36
4906 5423 5.008331 ACAATCATGAATGAACAGCACTCT 58.992 37.500 17.65 0.00 40.69 3.24
4912 5429 5.066893 CCCTGGTACAATCATGAATGAACAG 59.933 44.000 17.65 18.16 40.69 3.16
4920 5437 5.825532 TCATTTTCCCTGGTACAATCATGA 58.174 37.500 0.00 0.00 38.70 3.07
4921 5438 6.528537 TTCATTTTCCCTGGTACAATCATG 57.471 37.500 0.00 0.00 38.70 3.07
4922 5439 6.098695 CCATTCATTTTCCCTGGTACAATCAT 59.901 38.462 0.00 0.00 38.70 2.45
4923 5440 5.421693 CCATTCATTTTCCCTGGTACAATCA 59.578 40.000 0.00 0.00 38.70 2.57
4924 5441 5.656416 TCCATTCATTTTCCCTGGTACAATC 59.344 40.000 0.00 0.00 38.70 2.67
4925 5442 5.588845 TCCATTCATTTTCCCTGGTACAAT 58.411 37.500 0.00 0.00 38.70 2.71
4926 5443 5.004361 TCCATTCATTTTCCCTGGTACAA 57.996 39.130 0.00 0.00 38.70 2.41
4985 5502 3.055747 CCCTTCCTTATTCTATCGCTCCC 60.056 52.174 0.00 0.00 0.00 4.30
5028 5545 5.178252 AGTGTTCAACGACATTCTGATTCTG 59.822 40.000 0.00 0.00 0.00 3.02
5029 5546 5.300752 AGTGTTCAACGACATTCTGATTCT 58.699 37.500 0.00 0.00 0.00 2.40
5030 5547 5.597813 AGTGTTCAACGACATTCTGATTC 57.402 39.130 0.00 0.00 0.00 2.52
5031 5548 5.049405 GGAAGTGTTCAACGACATTCTGATT 60.049 40.000 0.00 0.00 0.00 2.57
5032 5549 4.452455 GGAAGTGTTCAACGACATTCTGAT 59.548 41.667 0.00 0.00 0.00 2.90
5033 5550 3.807622 GGAAGTGTTCAACGACATTCTGA 59.192 43.478 0.00 0.00 0.00 3.27
5103 5620 1.148310 AATTCGACAACACGAGCCAG 58.852 50.000 0.00 0.00 43.04 4.85
5108 5626 3.362534 CACGACATAATTCGACAACACGA 59.637 43.478 0.00 0.00 41.78 4.35
5117 5635 4.079028 CCAAAACGACACGACATAATTCG 58.921 43.478 0.00 0.00 44.87 3.34
5123 5641 0.865769 GAGCCAAAACGACACGACAT 59.134 50.000 0.00 0.00 0.00 3.06
5135 5653 3.081061 AGCATATTCAACACGAGCCAAA 58.919 40.909 0.00 0.00 0.00 3.28
5136 5654 2.710377 AGCATATTCAACACGAGCCAA 58.290 42.857 0.00 0.00 0.00 4.52
5137 5655 2.401583 AGCATATTCAACACGAGCCA 57.598 45.000 0.00 0.00 0.00 4.75
5138 5656 3.364366 GCATAGCATATTCAACACGAGCC 60.364 47.826 0.00 0.00 0.00 4.70
5139 5657 3.662713 CGCATAGCATATTCAACACGAGC 60.663 47.826 0.00 0.00 0.00 5.03
5140 5658 3.735746 TCGCATAGCATATTCAACACGAG 59.264 43.478 0.00 0.00 0.00 4.18
5141 5659 3.712187 TCGCATAGCATATTCAACACGA 58.288 40.909 0.00 0.00 0.00 4.35
5142 5660 4.652175 ATCGCATAGCATATTCAACACG 57.348 40.909 0.00 0.00 0.00 4.49
5143 5661 5.149273 CCAATCGCATAGCATATTCAACAC 58.851 41.667 0.00 0.00 0.00 3.32
5145 5663 5.149273 CACCAATCGCATAGCATATTCAAC 58.851 41.667 0.00 0.00 0.00 3.18
5146 5664 4.320421 GCACCAATCGCATAGCATATTCAA 60.320 41.667 0.00 0.00 0.00 2.69
5149 5667 3.415212 AGCACCAATCGCATAGCATATT 58.585 40.909 0.00 0.00 0.00 1.28
5150 5668 3.063510 AGCACCAATCGCATAGCATAT 57.936 42.857 0.00 0.00 0.00 1.78
5180 5733 3.082548 TCTACTCGGGTTCTTCTCAGTG 58.917 50.000 0.00 0.00 0.00 3.66
5181 5734 3.436577 TCTACTCGGGTTCTTCTCAGT 57.563 47.619 0.00 0.00 0.00 3.41
5194 5747 6.816640 TGGTCCAACAAATCTAAATCTACTCG 59.183 38.462 0.00 0.00 0.00 4.18
5223 5801 3.300009 CAACTGAACCGAGCATCAAAAC 58.700 45.455 0.00 0.00 33.17 2.43
5229 5807 1.623811 ACTACCAACTGAACCGAGCAT 59.376 47.619 0.00 0.00 0.00 3.79
5234 5812 2.249844 ACCAACTACCAACTGAACCG 57.750 50.000 0.00 0.00 0.00 4.44
5251 5829 2.194271 GCTTGTGCAGACGATACTACC 58.806 52.381 0.00 0.00 39.41 3.18
5253 5831 1.471287 ACGCTTGTGCAGACGATACTA 59.529 47.619 0.74 0.00 39.64 1.82
5260 5838 3.433615 AGAATCTAAACGCTTGTGCAGAC 59.566 43.478 0.00 0.00 39.64 3.51
5276 5854 4.384208 CCCTAACCATTCGGAACAGAATCT 60.384 45.833 0.00 0.00 38.66 2.40
5277 5855 3.877508 CCCTAACCATTCGGAACAGAATC 59.122 47.826 0.00 0.00 38.66 2.52
5278 5856 3.521937 TCCCTAACCATTCGGAACAGAAT 59.478 43.478 0.00 0.00 41.12 2.40
5279 5857 2.907696 TCCCTAACCATTCGGAACAGAA 59.092 45.455 0.00 0.00 35.59 3.02
5281 5859 3.467803 GATCCCTAACCATTCGGAACAG 58.532 50.000 0.00 0.00 35.59 3.16
5282 5860 2.171870 GGATCCCTAACCATTCGGAACA 59.828 50.000 0.00 0.00 35.59 3.18
5283 5861 2.171870 TGGATCCCTAACCATTCGGAAC 59.828 50.000 9.90 0.00 35.59 3.62
5284 5862 2.171870 GTGGATCCCTAACCATTCGGAA 59.828 50.000 9.90 0.00 38.48 4.30
5285 5863 1.766496 GTGGATCCCTAACCATTCGGA 59.234 52.381 9.90 0.00 38.48 4.55
5286 5864 1.488812 TGTGGATCCCTAACCATTCGG 59.511 52.381 9.90 0.00 38.48 4.30
5287 5865 3.141398 CATGTGGATCCCTAACCATTCG 58.859 50.000 9.90 0.00 38.48 3.34
5338 5918 3.756434 TGATCCATCCGTCTTTCCAAAAC 59.244 43.478 0.00 0.00 0.00 2.43
5342 5922 3.931907 ATTGATCCATCCGTCTTTCCA 57.068 42.857 0.00 0.00 0.00 3.53
5349 5929 4.566278 CCACATCCATATTGATCCATCCGT 60.566 45.833 0.00 0.00 0.00 4.69
5350 5930 3.943381 CCACATCCATATTGATCCATCCG 59.057 47.826 0.00 0.00 0.00 4.18
5351 5931 5.183530 TCCACATCCATATTGATCCATCC 57.816 43.478 0.00 0.00 0.00 3.51
5352 5932 5.813383 ACTCCACATCCATATTGATCCATC 58.187 41.667 0.00 0.00 0.00 3.51
5353 5933 5.855338 ACTCCACATCCATATTGATCCAT 57.145 39.130 0.00 0.00 0.00 3.41
5354 5934 6.957853 ATACTCCACATCCATATTGATCCA 57.042 37.500 0.00 0.00 0.00 3.41
5355 5935 7.362401 GCAAATACTCCACATCCATATTGATCC 60.362 40.741 0.00 0.00 0.00 3.36
5356 5936 7.175467 TGCAAATACTCCACATCCATATTGATC 59.825 37.037 0.00 0.00 0.00 2.92
5357 5937 7.005902 TGCAAATACTCCACATCCATATTGAT 58.994 34.615 0.00 0.00 0.00 2.57
5358 5938 6.363882 TGCAAATACTCCACATCCATATTGA 58.636 36.000 0.00 0.00 0.00 2.57
5359 5939 6.638096 TGCAAATACTCCACATCCATATTG 57.362 37.500 0.00 0.00 0.00 1.90
5360 5940 7.458409 GATGCAAATACTCCACATCCATATT 57.542 36.000 0.00 0.00 32.76 1.28
5366 5946 3.466836 TCGGATGCAAATACTCCACATC 58.533 45.455 4.26 0.00 37.09 3.06
5367 5947 3.470709 CTCGGATGCAAATACTCCACAT 58.529 45.455 4.26 0.00 0.00 3.21
5368 5948 2.905075 CTCGGATGCAAATACTCCACA 58.095 47.619 4.26 0.00 0.00 4.17
5369 5949 1.599542 GCTCGGATGCAAATACTCCAC 59.400 52.381 4.26 0.00 0.00 4.02
5370 5950 1.486310 AGCTCGGATGCAAATACTCCA 59.514 47.619 4.26 0.00 34.99 3.86
5371 5951 2.139118 GAGCTCGGATGCAAATACTCC 58.861 52.381 0.00 0.00 34.99 3.85
5372 5952 2.826428 TGAGCTCGGATGCAAATACTC 58.174 47.619 9.64 0.00 34.99 2.59
5373 5953 2.988010 TGAGCTCGGATGCAAATACT 57.012 45.000 9.64 0.00 34.99 2.12
5374 5954 3.685058 GTTTGAGCTCGGATGCAAATAC 58.315 45.455 9.64 0.00 33.43 1.89
5375 5955 2.351418 CGTTTGAGCTCGGATGCAAATA 59.649 45.455 9.64 0.00 33.43 1.40
5376 5956 1.131126 CGTTTGAGCTCGGATGCAAAT 59.869 47.619 9.64 0.00 33.43 2.32
5377 5957 0.516877 CGTTTGAGCTCGGATGCAAA 59.483 50.000 9.64 0.26 34.99 3.68
5378 5958 1.911293 GCGTTTGAGCTCGGATGCAA 61.911 55.000 21.67 4.18 34.99 4.08
5381 5961 4.192000 AGCGTTTGAGCTCGGATG 57.808 55.556 9.64 6.61 45.67 3.51
5400 5980 2.152830 CCCGATTTTACCGTTCACCAA 58.847 47.619 0.00 0.00 0.00 3.67
5403 5983 2.097680 TCCCCGATTTTACCGTTCAC 57.902 50.000 0.00 0.00 0.00 3.18
5409 5989 5.963176 TTACTGTTTTCCCCGATTTTACC 57.037 39.130 0.00 0.00 0.00 2.85
5441 6034 8.508062 GTCAAAGGTTACCACAAAAACAATTTT 58.492 29.630 3.51 0.00 39.30 1.82
5442 6035 7.661847 TGTCAAAGGTTACCACAAAAACAATTT 59.338 29.630 3.51 0.00 0.00 1.82
5489 6082 9.389755 TCAGGAATGTTCGTTCATGATAAATAA 57.610 29.630 15.06 0.00 42.07 1.40
5490 6083 8.956533 TCAGGAATGTTCGTTCATGATAAATA 57.043 30.769 15.06 0.00 42.07 1.40
5491 6084 7.554118 ACTCAGGAATGTTCGTTCATGATAAAT 59.446 33.333 17.99 6.32 44.72 1.40
5497 6090 3.372206 GGACTCAGGAATGTTCGTTCATG 59.628 47.826 11.56 11.56 40.27 3.07
5503 6096 1.276421 ACCAGGACTCAGGAATGTTCG 59.724 52.381 0.00 0.00 0.00 3.95
5592 6187 5.423886 TGACATTTGTATAAGTCATGGCGA 58.576 37.500 0.00 0.00 36.20 5.54
5593 6188 5.733226 TGACATTTGTATAAGTCATGGCG 57.267 39.130 0.00 0.00 36.20 5.69
5604 6199 9.859427 ATTTTCATCACGAAATGACATTTGTAT 57.141 25.926 18.00 3.66 43.12 2.29
5605 6200 9.340695 GATTTTCATCACGAAATGACATTTGTA 57.659 29.630 18.00 1.52 43.12 2.41
5608 6203 8.918658 CAAGATTTTCATCACGAAATGACATTT 58.081 29.630 13.24 13.24 43.12 2.32
5620 6215 6.408858 TCTACGCTTCAAGATTTTCATCAC 57.591 37.500 0.00 0.00 0.00 3.06
5624 6219 7.022055 TGTTTTCTACGCTTCAAGATTTTCA 57.978 32.000 0.00 0.00 0.00 2.69
5631 6226 6.198687 TGACAAATGTTTTCTACGCTTCAAG 58.801 36.000 0.00 0.00 0.00 3.02
5639 6234 7.918562 TGCTAACCTTTGACAAATGTTTTCTAC 59.081 33.333 21.56 10.87 32.64 2.59
5679 7543 7.315066 ACCCATTTAAAGTCAACCATCAATT 57.685 32.000 0.00 0.00 0.00 2.32
5684 7548 4.592778 AGCAACCCATTTAAAGTCAACCAT 59.407 37.500 0.00 0.00 0.00 3.55
5686 7550 4.306600 CAGCAACCCATTTAAAGTCAACC 58.693 43.478 0.00 0.00 0.00 3.77
5692 7556 3.989817 GTCTTGCAGCAACCCATTTAAAG 59.010 43.478 2.83 0.00 0.00 1.85
5700 7564 0.312102 GTGAAGTCTTGCAGCAACCC 59.688 55.000 2.83 0.00 0.00 4.11
5723 7587 1.270826 ACATCAGCCGTAGATGGATCG 59.729 52.381 11.89 0.00 45.49 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.