Multiple sequence alignment - TraesCS6D01G338700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G338700 chr6D 100.000 6759 0 0 1 6759 438811638 438804880 0.000000e+00 12482.0
1 TraesCS6D01G338700 chr6D 91.304 621 34 8 5883 6493 438461508 438460898 0.000000e+00 830.0
2 TraesCS6D01G338700 chr6D 82.168 286 29 13 4138 4411 438557993 438557718 6.820000e-55 226.0
3 TraesCS6D01G338700 chr6D 89.744 78 3 1 3900 3977 438558192 438558120 2.010000e-15 95.3
4 TraesCS6D01G338700 chr6A 88.537 4702 259 107 2102 6609 587568442 587563827 0.000000e+00 5439.0
5 TraesCS6D01G338700 chr6A 89.333 1650 92 41 99 1694 587570850 587569231 0.000000e+00 1995.0
6 TraesCS6D01G338700 chr6A 83.734 873 99 22 4684 5526 587761299 587762158 0.000000e+00 785.0
7 TraesCS6D01G338700 chr6A 82.946 645 68 22 5075 5689 587699842 587700474 1.660000e-150 544.0
8 TraesCS6D01G338700 chr6A 84.871 542 60 14 4518 5046 587699317 587699849 1.670000e-145 527.0
9 TraesCS6D01G338700 chr6A 87.609 460 28 7 6034 6493 586878180 586877750 2.180000e-139 507.0
10 TraesCS6D01G338700 chr6A 88.578 429 32 10 5602 6018 587762206 587762629 7.820000e-139 505.0
11 TraesCS6D01G338700 chr6A 80.606 660 73 29 4191 4821 586879089 586878456 6.180000e-125 459.0
12 TraesCS6D01G338700 chr6A 90.288 278 15 8 5789 6062 586878459 586878190 3.000000e-93 353.0
13 TraesCS6D01G338700 chr6A 92.889 225 6 3 1685 1902 587569192 587568971 1.090000e-82 318.0
14 TraesCS6D01G338700 chr6A 96.711 152 5 0 6608 6759 19885819 19885970 3.130000e-63 254.0
15 TraesCS6D01G338700 chr6A 96.078 153 6 0 6607 6759 41988140 41988292 4.050000e-62 250.0
16 TraesCS6D01G338700 chr6A 92.647 136 10 0 4035 4170 586898032 586897897 5.350000e-46 196.0
17 TraesCS6D01G338700 chr6A 89.773 88 5 4 5762 5846 587700520 587700606 7.170000e-20 110.0
18 TraesCS6D01G338700 chr6B 90.348 3243 175 60 3228 6380 663843455 663840261 0.000000e+00 4128.0
19 TraesCS6D01G338700 chr6B 88.796 1919 94 52 167 2045 663846416 663844579 0.000000e+00 2241.0
20 TraesCS6D01G338700 chr6B 84.381 1018 67 49 2113 3073 663844551 663843569 0.000000e+00 915.0
21 TraesCS6D01G338700 chr6B 77.221 1655 185 97 4108 5683 664027584 664029125 0.000000e+00 791.0
22 TraesCS6D01G338700 chr6B 84.419 706 77 18 4860 5544 664001609 664002302 0.000000e+00 664.0
23 TraesCS6D01G338700 chr6B 88.743 533 47 8 5963 6493 663801023 663800502 2.060000e-179 640.0
24 TraesCS6D01G338700 chr6B 88.591 149 16 1 6462 6609 663800494 663800346 5.390000e-41 180.0
25 TraesCS6D01G338700 chr6B 89.630 135 11 2 3840 3974 664027355 664027486 1.170000e-37 169.0
26 TraesCS6D01G338700 chr7A 97.368 152 4 0 6608 6759 6486675 6486826 6.720000e-65 259.0
27 TraesCS6D01G338700 chr7A 97.368 152 4 0 6608 6759 408591925 408592076 6.720000e-65 259.0
28 TraesCS6D01G338700 chr7A 82.286 175 23 5 1135 1305 581035309 581035479 1.960000e-30 145.0
29 TraesCS6D01G338700 chr5A 96.711 152 5 0 6608 6759 12031137 12030986 3.130000e-63 254.0
30 TraesCS6D01G338700 chr2D 96.732 153 4 1 6607 6759 10309547 10309396 3.130000e-63 254.0
31 TraesCS6D01G338700 chr2D 96.026 151 6 0 6609 6759 587201003 587201153 5.240000e-61 246.0
32 TraesCS6D01G338700 chr5D 95.425 153 6 1 6608 6759 537169517 537169365 6.770000e-60 243.0
33 TraesCS6D01G338700 chr4B 95.973 149 6 0 6609 6757 339482865 339483013 6.770000e-60 243.0
34 TraesCS6D01G338700 chr3D 83.626 171 20 6 1135 1301 156210862 156211028 3.260000e-33 154.0
35 TraesCS6D01G338700 chr3B 83.041 171 21 6 1135 1301 225319778 225319612 1.520000e-31 148.0
36 TraesCS6D01G338700 chr3A 82.456 171 22 6 1135 1301 175844826 175844992 7.070000e-30 143.0
37 TraesCS6D01G338700 chr1D 91.781 73 5 1 26 98 74958850 74958921 4.310000e-17 100.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G338700 chr6D 438804880 438811638 6758 True 12482.000000 12482 100.000000 1 6759 1 chr6D.!!$R2 6758
1 TraesCS6D01G338700 chr6D 438460898 438461508 610 True 830.000000 830 91.304000 5883 6493 1 chr6D.!!$R1 610
2 TraesCS6D01G338700 chr6A 587563827 587570850 7023 True 2584.000000 5439 90.253000 99 6609 3 chr6A.!!$R3 6510
3 TraesCS6D01G338700 chr6A 587761299 587762629 1330 False 645.000000 785 86.156000 4684 6018 2 chr6A.!!$F4 1334
4 TraesCS6D01G338700 chr6A 586877750 586879089 1339 True 439.666667 507 86.167667 4191 6493 3 chr6A.!!$R2 2302
5 TraesCS6D01G338700 chr6A 587699317 587700606 1289 False 393.666667 544 85.863333 4518 5846 3 chr6A.!!$F3 1328
6 TraesCS6D01G338700 chr6B 663840261 663846416 6155 True 2428.000000 4128 87.841667 167 6380 3 chr6B.!!$R2 6213
7 TraesCS6D01G338700 chr6B 664001609 664002302 693 False 664.000000 664 84.419000 4860 5544 1 chr6B.!!$F1 684
8 TraesCS6D01G338700 chr6B 664027355 664029125 1770 False 480.000000 791 83.425500 3840 5683 2 chr6B.!!$F2 1843
9 TraesCS6D01G338700 chr6B 663800346 663801023 677 True 410.000000 640 88.667000 5963 6609 2 chr6B.!!$R1 646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
216 221 0.034477 ACCCATCAACGGAACCCATC 60.034 55.0 0.00 0.00 0.00 3.51 F
539 571 0.467384 TCAATCTCTAGCCAGCCAGC 59.533 55.0 0.00 0.00 0.00 4.85 F
2064 2206 0.411452 AGCTTGAGGGGAGAGAGTCA 59.589 55.0 0.00 0.00 0.00 3.41 F
3151 3761 0.107897 TATGCAGTTGGGCCACTACG 60.108 55.0 5.23 0.65 0.00 3.51 F
3279 3892 0.112412 GGTGGCCTTTTCCTCCTTGA 59.888 55.0 3.32 0.00 36.94 3.02 F
4184 4908 0.106066 TCCATTGCATAGCCCTTGGG 60.106 55.0 0.32 0.32 0.00 4.12 F
5194 6023 0.892755 TCCGTTCTTGCTATGACCGT 59.107 50.0 0.00 0.00 0.00 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1290 1358 0.250209 TGGTTTGCTTACCGCCGTTA 60.250 50.0 3.83 0.00 41.28 3.18 R
2094 2582 0.252239 TCAGTCTGCCTGGCCTCTAA 60.252 55.0 17.53 0.00 41.83 2.10 R
3314 3927 0.305009 GCGTCGATCGATCACTCTCA 59.695 55.0 22.50 0.00 42.86 3.27 R
4182 4906 0.040499 TTTACATGACCCCAAGCCCC 59.960 55.0 0.00 0.00 0.00 5.80 R
5140 5957 0.183492 TGAAACTGAACCTGCAGGCT 59.817 50.0 33.06 22.25 40.20 4.58 R
5644 6534 0.249699 TCACCGACGCAAATGTCAGT 60.250 50.0 0.00 0.00 38.84 3.41 R
6662 7707 0.034477 CCTTGTAATCCTGGCCGGTT 60.034 55.0 11.58 1.23 0.00 4.44 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.249638 CACCCATCTGAAAATTAGGGGA 57.750 45.455 1.94 0.00 40.64 4.81
22 23 4.210331 CACCCATCTGAAAATTAGGGGAG 58.790 47.826 1.94 0.00 40.64 4.30
23 24 3.205282 ACCCATCTGAAAATTAGGGGAGG 59.795 47.826 1.94 0.00 40.64 4.30
24 25 3.437052 CCCATCTGAAAATTAGGGGAGGG 60.437 52.174 0.00 0.00 36.14 4.30
25 26 3.437052 CCATCTGAAAATTAGGGGAGGGG 60.437 52.174 0.00 0.00 0.00 4.79
26 27 2.214201 TCTGAAAATTAGGGGAGGGGG 58.786 52.381 0.00 0.00 0.00 5.40
40 41 3.434039 GGGGGAGGGGCATGTTTA 58.566 61.111 0.00 0.00 0.00 2.01
41 42 1.230212 GGGGGAGGGGCATGTTTAG 59.770 63.158 0.00 0.00 0.00 1.85
42 43 1.580994 GGGGGAGGGGCATGTTTAGT 61.581 60.000 0.00 0.00 0.00 2.24
43 44 0.335019 GGGGAGGGGCATGTTTAGTT 59.665 55.000 0.00 0.00 0.00 2.24
44 45 1.474330 GGGAGGGGCATGTTTAGTTG 58.526 55.000 0.00 0.00 0.00 3.16
45 46 1.474330 GGAGGGGCATGTTTAGTTGG 58.526 55.000 0.00 0.00 0.00 3.77
46 47 1.272480 GGAGGGGCATGTTTAGTTGGT 60.272 52.381 0.00 0.00 0.00 3.67
47 48 2.525368 GAGGGGCATGTTTAGTTGGTT 58.475 47.619 0.00 0.00 0.00 3.67
48 49 3.562609 GGAGGGGCATGTTTAGTTGGTTA 60.563 47.826 0.00 0.00 0.00 2.85
49 50 3.694566 GAGGGGCATGTTTAGTTGGTTAG 59.305 47.826 0.00 0.00 0.00 2.34
50 51 3.332485 AGGGGCATGTTTAGTTGGTTAGA 59.668 43.478 0.00 0.00 0.00 2.10
51 52 4.083565 GGGGCATGTTTAGTTGGTTAGAA 58.916 43.478 0.00 0.00 0.00 2.10
52 53 4.525100 GGGGCATGTTTAGTTGGTTAGAAA 59.475 41.667 0.00 0.00 0.00 2.52
53 54 5.336451 GGGGCATGTTTAGTTGGTTAGAAAG 60.336 44.000 0.00 0.00 0.00 2.62
54 55 5.336451 GGGCATGTTTAGTTGGTTAGAAAGG 60.336 44.000 0.00 0.00 0.00 3.11
55 56 5.475564 GGCATGTTTAGTTGGTTAGAAAGGA 59.524 40.000 0.00 0.00 0.00 3.36
56 57 6.349363 GGCATGTTTAGTTGGTTAGAAAGGAG 60.349 42.308 0.00 0.00 0.00 3.69
57 58 6.206829 GCATGTTTAGTTGGTTAGAAAGGAGT 59.793 38.462 0.00 0.00 0.00 3.85
58 59 7.573283 GCATGTTTAGTTGGTTAGAAAGGAGTC 60.573 40.741 0.00 0.00 0.00 3.36
59 60 7.133133 TGTTTAGTTGGTTAGAAAGGAGTCT 57.867 36.000 0.00 0.00 0.00 3.24
60 61 6.990349 TGTTTAGTTGGTTAGAAAGGAGTCTG 59.010 38.462 0.00 0.00 0.00 3.51
61 62 6.742559 TTAGTTGGTTAGAAAGGAGTCTGT 57.257 37.500 0.00 0.00 0.00 3.41
62 63 7.844493 TTAGTTGGTTAGAAAGGAGTCTGTA 57.156 36.000 0.00 0.00 0.00 2.74
63 64 6.347859 AGTTGGTTAGAAAGGAGTCTGTAG 57.652 41.667 0.00 0.00 0.00 2.74
64 65 6.075984 AGTTGGTTAGAAAGGAGTCTGTAGA 58.924 40.000 0.00 0.00 0.00 2.59
65 66 6.553852 AGTTGGTTAGAAAGGAGTCTGTAGAA 59.446 38.462 0.00 0.00 0.00 2.10
66 67 6.591750 TGGTTAGAAAGGAGTCTGTAGAAG 57.408 41.667 0.00 0.00 0.00 2.85
67 68 5.047235 TGGTTAGAAAGGAGTCTGTAGAAGC 60.047 44.000 0.00 0.00 0.00 3.86
68 69 5.412640 GTTAGAAAGGAGTCTGTAGAAGCC 58.587 45.833 0.00 0.00 0.00 4.35
69 70 3.785364 AGAAAGGAGTCTGTAGAAGCCT 58.215 45.455 0.00 0.00 33.07 4.58
70 71 3.513515 AGAAAGGAGTCTGTAGAAGCCTG 59.486 47.826 5.01 0.00 32.37 4.85
71 72 2.614134 AGGAGTCTGTAGAAGCCTGT 57.386 50.000 3.75 0.00 31.27 4.00
72 73 3.741245 AGGAGTCTGTAGAAGCCTGTA 57.259 47.619 3.75 0.00 31.27 2.74
73 74 4.258457 AGGAGTCTGTAGAAGCCTGTAT 57.742 45.455 3.75 0.00 31.27 2.29
74 75 3.957497 AGGAGTCTGTAGAAGCCTGTATG 59.043 47.826 3.75 0.00 31.27 2.39
75 76 3.954904 GGAGTCTGTAGAAGCCTGTATGA 59.045 47.826 0.00 0.00 0.00 2.15
76 77 4.202070 GGAGTCTGTAGAAGCCTGTATGAC 60.202 50.000 0.00 0.00 0.00 3.06
77 78 3.702045 AGTCTGTAGAAGCCTGTATGACC 59.298 47.826 0.00 0.00 0.00 4.02
78 79 3.031736 TCTGTAGAAGCCTGTATGACCC 58.968 50.000 0.00 0.00 0.00 4.46
79 80 2.103263 CTGTAGAAGCCTGTATGACCCC 59.897 54.545 0.00 0.00 0.00 4.95
80 81 1.068741 GTAGAAGCCTGTATGACCCCG 59.931 57.143 0.00 0.00 0.00 5.73
81 82 0.617820 AGAAGCCTGTATGACCCCGT 60.618 55.000 0.00 0.00 0.00 5.28
82 83 1.117150 GAAGCCTGTATGACCCCGTA 58.883 55.000 0.00 0.00 0.00 4.02
83 84 0.828677 AAGCCTGTATGACCCCGTAC 59.171 55.000 0.00 0.00 35.77 3.67
84 85 1.066918 GCCTGTATGACCCCGTACG 59.933 63.158 8.69 8.69 37.54 3.67
85 86 1.669999 GCCTGTATGACCCCGTACGT 61.670 60.000 15.21 0.00 37.54 3.57
86 87 0.383231 CCTGTATGACCCCGTACGTC 59.617 60.000 15.21 5.96 37.54 4.34
87 88 1.386533 CTGTATGACCCCGTACGTCT 58.613 55.000 15.21 0.00 37.54 4.18
88 89 2.564771 CTGTATGACCCCGTACGTCTA 58.435 52.381 15.21 0.00 37.54 2.59
89 90 2.547211 CTGTATGACCCCGTACGTCTAG 59.453 54.545 15.21 2.08 37.54 2.43
90 91 1.265365 GTATGACCCCGTACGTCTAGC 59.735 57.143 15.21 0.13 0.00 3.42
91 92 0.394762 ATGACCCCGTACGTCTAGCA 60.395 55.000 15.21 6.06 0.00 3.49
92 93 0.394762 TGACCCCGTACGTCTAGCAT 60.395 55.000 15.21 0.00 0.00 3.79
93 94 0.743097 GACCCCGTACGTCTAGCATT 59.257 55.000 15.21 0.00 0.00 3.56
94 95 0.743097 ACCCCGTACGTCTAGCATTC 59.257 55.000 15.21 0.00 0.00 2.67
95 96 1.030457 CCCCGTACGTCTAGCATTCT 58.970 55.000 15.21 0.00 0.00 2.40
96 97 1.407979 CCCCGTACGTCTAGCATTCTT 59.592 52.381 15.21 0.00 0.00 2.52
97 98 2.460918 CCCGTACGTCTAGCATTCTTG 58.539 52.381 15.21 0.00 0.00 3.02
111 112 8.543774 TCTAGCATTCTTGGAGAGAAAATTACT 58.456 33.333 0.00 0.00 46.90 2.24
162 163 8.487028 AGTAGGTTTTTGTAGCTCTAGCATTAT 58.513 33.333 4.54 0.00 45.16 1.28
206 211 1.551883 ACGTACCTACCACCCATCAAC 59.448 52.381 0.00 0.00 0.00 3.18
212 217 0.325602 TACCACCCATCAACGGAACC 59.674 55.000 0.00 0.00 0.00 3.62
214 219 1.074072 CACCCATCAACGGAACCCA 59.926 57.895 0.00 0.00 0.00 4.51
216 221 0.034477 ACCCATCAACGGAACCCATC 60.034 55.000 0.00 0.00 0.00 3.51
266 273 2.872245 CAAGGGTTAGTGTGTCACTGTG 59.128 50.000 11.92 0.17 45.01 3.66
267 274 2.116238 AGGGTTAGTGTGTCACTGTGT 58.884 47.619 7.79 0.00 45.01 3.72
303 316 3.504520 TGACTTTTATTTCGCTTGTCCCC 59.495 43.478 0.00 0.00 0.00 4.81
305 318 2.588464 TTTATTTCGCTTGTCCCCCA 57.412 45.000 0.00 0.00 0.00 4.96
322 335 2.225727 CCCCACAGAAAGCTCGTAAAAC 59.774 50.000 0.00 0.00 0.00 2.43
332 345 3.400255 AGCTCGTAAAACCTTTCCACTC 58.600 45.455 0.00 0.00 0.00 3.51
420 433 4.572909 CACTCATCAACAGTGAGGAATCA 58.427 43.478 0.00 0.00 43.57 2.57
474 491 2.519063 CACCAGTGCAGTGCCCAA 60.519 61.111 16.47 0.00 0.00 4.12
535 567 1.804372 CGTGGTCAATCTCTAGCCAGC 60.804 57.143 0.00 0.00 0.00 4.85
536 568 0.833287 TGGTCAATCTCTAGCCAGCC 59.167 55.000 0.00 0.00 0.00 4.85
537 569 0.833287 GGTCAATCTCTAGCCAGCCA 59.167 55.000 0.00 0.00 0.00 4.75
538 570 1.202627 GGTCAATCTCTAGCCAGCCAG 60.203 57.143 0.00 0.00 0.00 4.85
539 571 0.467384 TCAATCTCTAGCCAGCCAGC 59.533 55.000 0.00 0.00 0.00 4.85
540 572 0.534652 CAATCTCTAGCCAGCCAGCC 60.535 60.000 0.00 0.00 0.00 4.85
541 573 0.693767 AATCTCTAGCCAGCCAGCCT 60.694 55.000 0.00 0.00 0.00 4.58
572 604 3.453465 GTCTCAAGCGACGCACTC 58.547 61.111 23.70 2.34 0.00 3.51
581 613 1.351012 CGACGCACTCTACGTAGGG 59.649 63.158 21.05 21.05 45.24 3.53
582 614 1.726265 GACGCACTCTACGTAGGGG 59.274 63.158 25.77 17.64 45.24 4.79
583 615 1.001641 ACGCACTCTACGTAGGGGT 60.002 57.895 25.77 18.24 43.02 4.95
1290 1358 2.685380 CCCCTCGTCCTCTGGCTT 60.685 66.667 0.00 0.00 0.00 4.35
1326 1399 5.120674 GCAAACCAAGCACATTCCTTAATTC 59.879 40.000 0.00 0.00 0.00 2.17
1339 1412 6.677781 TTCCTTAATTCCTTCGTATGCTTG 57.322 37.500 0.00 0.00 0.00 4.01
1340 1413 5.741011 TCCTTAATTCCTTCGTATGCTTGT 58.259 37.500 0.00 0.00 0.00 3.16
1341 1414 5.815740 TCCTTAATTCCTTCGTATGCTTGTC 59.184 40.000 0.00 0.00 0.00 3.18
1342 1415 5.007724 CCTTAATTCCTTCGTATGCTTGTCC 59.992 44.000 0.00 0.00 0.00 4.02
1343 1416 2.396590 TTCCTTCGTATGCTTGTCCC 57.603 50.000 0.00 0.00 0.00 4.46
1344 1417 1.271856 TCCTTCGTATGCTTGTCCCA 58.728 50.000 0.00 0.00 0.00 4.37
1345 1418 1.837439 TCCTTCGTATGCTTGTCCCAT 59.163 47.619 0.00 0.00 0.00 4.00
1346 1419 1.942657 CCTTCGTATGCTTGTCCCATG 59.057 52.381 0.00 0.00 0.00 3.66
1347 1420 2.419990 CCTTCGTATGCTTGTCCCATGA 60.420 50.000 0.00 0.00 0.00 3.07
1348 1421 3.470709 CTTCGTATGCTTGTCCCATGAT 58.529 45.455 0.00 0.00 0.00 2.45
1349 1422 3.558931 TCGTATGCTTGTCCCATGATT 57.441 42.857 0.00 0.00 0.00 2.57
1350 1423 3.884895 TCGTATGCTTGTCCCATGATTT 58.115 40.909 0.00 0.00 0.00 2.17
1351 1424 3.876914 TCGTATGCTTGTCCCATGATTTC 59.123 43.478 0.00 0.00 0.00 2.17
1386 1465 6.036735 TCACTGTGTGCTTGTTTAGTTTAGTC 59.963 38.462 7.79 0.00 32.98 2.59
1475 1562 1.342496 GTCTCCCGATCATGATGAGCA 59.658 52.381 14.30 1.98 31.10 4.26
1543 1630 3.540367 TTCCGGGGCTTTCGACACC 62.540 63.158 0.00 0.00 0.00 4.16
1600 1687 1.349688 TGGGTAGCCACAGTAACCAAG 59.650 52.381 10.27 0.00 34.12 3.61
1627 1714 1.138568 CCCATGATTCTCCTCTGCCT 58.861 55.000 0.00 0.00 0.00 4.75
1631 1718 1.786937 TGATTCTCCTCTGCCTCTCC 58.213 55.000 0.00 0.00 0.00 3.71
1638 1725 1.988107 TCCTCTGCCTCTCCAACAAAT 59.012 47.619 0.00 0.00 0.00 2.32
1639 1726 2.376518 TCCTCTGCCTCTCCAACAAATT 59.623 45.455 0.00 0.00 0.00 1.82
1697 1831 1.682323 TGCATTGCACACACACAGATT 59.318 42.857 7.38 0.00 31.71 2.40
1723 1857 1.971167 GCAAGATCCAACGGCCACA 60.971 57.895 2.24 0.00 0.00 4.17
1749 1883 6.641314 AGTGTACGAACTGAAACTTGACATAG 59.359 38.462 0.00 0.00 0.00 2.23
1800 1934 1.145803 GTGAAGGACAACGTACTGGC 58.854 55.000 0.00 0.00 0.00 4.85
1803 1937 0.606604 AAGGACAACGTACTGGCGAT 59.393 50.000 0.00 0.00 35.59 4.58
1804 1938 0.606604 AGGACAACGTACTGGCGATT 59.393 50.000 0.00 0.00 35.59 3.34
1838 1973 2.033602 AGTTTGGGGCGGCTGTAC 59.966 61.111 9.56 2.46 0.00 2.90
1905 2047 0.460635 GGCGGGTAGTAAATGTGCGA 60.461 55.000 0.00 0.00 0.00 5.10
1950 2092 1.227089 ACGAGCATGGATCGCAGTC 60.227 57.895 3.59 0.00 45.69 3.51
1956 2098 0.807275 CATGGATCGCAGTCGCAGAA 60.807 55.000 0.00 0.00 39.69 3.02
1957 2099 0.807667 ATGGATCGCAGTCGCAGAAC 60.808 55.000 0.00 0.00 39.69 3.01
1959 2101 3.131661 GATCGCAGTCGCAGAACGC 62.132 63.158 0.00 0.00 43.23 4.84
1960 2102 3.914605 ATCGCAGTCGCAGAACGCA 62.915 57.895 0.00 0.00 42.60 5.24
1961 2103 4.126390 CGCAGTCGCAGAACGCAG 62.126 66.667 0.00 0.00 42.60 5.18
1962 2104 3.782244 GCAGTCGCAGAACGCAGG 61.782 66.667 0.00 0.00 42.60 4.85
1963 2105 3.114616 CAGTCGCAGAACGCAGGG 61.115 66.667 0.00 0.00 42.60 4.45
1964 2106 3.616721 AGTCGCAGAACGCAGGGT 61.617 61.111 0.00 0.00 42.60 4.34
1965 2107 3.414700 GTCGCAGAACGCAGGGTG 61.415 66.667 0.00 0.00 42.60 4.61
2011 2153 4.507710 ACATGCATGACAAGTTCTATCGT 58.492 39.130 32.75 2.07 0.00 3.73
2012 2154 5.660460 ACATGCATGACAAGTTCTATCGTA 58.340 37.500 32.75 0.00 0.00 3.43
2013 2155 5.520288 ACATGCATGACAAGTTCTATCGTAC 59.480 40.000 32.75 0.00 0.00 3.67
2033 2175 5.570589 CGTACTACTACGTTTTGCTTAGCTT 59.429 40.000 5.60 0.00 40.83 3.74
2055 2197 5.920193 TTTTTGATATGAAGCTTGAGGGG 57.080 39.130 2.10 0.00 0.00 4.79
2058 2200 3.657610 TGATATGAAGCTTGAGGGGAGA 58.342 45.455 2.10 0.00 0.00 3.71
2059 2201 3.645212 TGATATGAAGCTTGAGGGGAGAG 59.355 47.826 2.10 0.00 0.00 3.20
2060 2202 2.260639 ATGAAGCTTGAGGGGAGAGA 57.739 50.000 2.10 0.00 0.00 3.10
2062 2204 1.203237 TGAAGCTTGAGGGGAGAGAGT 60.203 52.381 2.10 0.00 0.00 3.24
2063 2205 1.480545 GAAGCTTGAGGGGAGAGAGTC 59.519 57.143 2.10 0.00 0.00 3.36
2064 2206 0.411452 AGCTTGAGGGGAGAGAGTCA 59.589 55.000 0.00 0.00 0.00 3.41
2075 2563 3.545703 GGAGAGAGTCAGAGAGAGAAGG 58.454 54.545 0.00 0.00 0.00 3.46
2082 2570 6.122277 AGAGTCAGAGAGAGAAGGAACATAG 58.878 44.000 0.00 0.00 0.00 2.23
2083 2571 6.069673 AGAGTCAGAGAGAGAAGGAACATAGA 60.070 42.308 0.00 0.00 0.00 1.98
2087 2575 5.598005 CAGAGAGAGAAGGAACATAGACCAT 59.402 44.000 0.00 0.00 0.00 3.55
2088 2576 6.098124 CAGAGAGAGAAGGAACATAGACCATT 59.902 42.308 0.00 0.00 0.00 3.16
2089 2577 7.286546 CAGAGAGAGAAGGAACATAGACCATTA 59.713 40.741 0.00 0.00 0.00 1.90
2090 2578 7.505585 AGAGAGAGAAGGAACATAGACCATTAG 59.494 40.741 0.00 0.00 0.00 1.73
2091 2579 6.553100 AGAGAGAAGGAACATAGACCATTAGG 59.447 42.308 0.00 0.00 42.21 2.69
2092 2580 5.071115 AGAGAAGGAACATAGACCATTAGGC 59.929 44.000 0.00 0.00 39.06 3.93
2093 2581 4.721776 AGAAGGAACATAGACCATTAGGCA 59.278 41.667 0.00 0.00 39.06 4.75
2094 2582 5.370880 AGAAGGAACATAGACCATTAGGCAT 59.629 40.000 0.00 0.00 39.06 4.40
2095 2583 5.653255 AGGAACATAGACCATTAGGCATT 57.347 39.130 0.00 0.00 39.06 3.56
2096 2584 6.763715 AGGAACATAGACCATTAGGCATTA 57.236 37.500 0.00 0.00 39.06 1.90
2097 2585 6.773638 AGGAACATAGACCATTAGGCATTAG 58.226 40.000 0.00 0.00 39.06 1.73
2098 2586 6.558775 AGGAACATAGACCATTAGGCATTAGA 59.441 38.462 0.00 0.00 39.06 2.10
2099 2587 6.876257 GGAACATAGACCATTAGGCATTAGAG 59.124 42.308 0.00 0.00 39.06 2.43
2100 2588 6.365970 ACATAGACCATTAGGCATTAGAGG 57.634 41.667 0.00 0.00 39.06 3.69
2101 2589 3.778954 AGACCATTAGGCATTAGAGGC 57.221 47.619 0.00 0.00 39.06 4.70
2185 2674 3.295973 GGCAATAAATAAGCCCACCTCA 58.704 45.455 0.00 0.00 42.58 3.86
2187 2676 4.207165 GCAATAAATAAGCCCACCTCAGA 58.793 43.478 0.00 0.00 0.00 3.27
2188 2677 4.276926 GCAATAAATAAGCCCACCTCAGAG 59.723 45.833 0.00 0.00 0.00 3.35
2189 2678 5.440610 CAATAAATAAGCCCACCTCAGAGT 58.559 41.667 0.00 0.00 0.00 3.24
2191 2680 4.762289 AAATAAGCCCACCTCAGAGTAG 57.238 45.455 0.00 0.00 0.00 2.57
2192 2681 1.486211 TAAGCCCACCTCAGAGTAGC 58.514 55.000 0.00 0.00 0.00 3.58
2199 2700 2.159170 CCACCTCAGAGTAGCTTACTGC 60.159 54.545 0.00 0.00 39.59 4.40
2203 2704 3.133721 CCTCAGAGTAGCTTACTGCCATT 59.866 47.826 0.00 0.00 44.23 3.16
2210 2711 4.938226 AGTAGCTTACTGCCATTTCTGAAC 59.062 41.667 0.00 0.00 44.23 3.18
2235 2736 4.246458 GGTCTTCAGTATCTTGGTCACAC 58.754 47.826 0.00 0.00 0.00 3.82
2244 2750 2.101209 CTTGGTCACACGCACGTTCC 62.101 60.000 0.00 0.00 0.00 3.62
2245 2751 2.586635 GGTCACACGCACGTTCCA 60.587 61.111 0.00 0.00 0.00 3.53
2250 2756 1.996898 TCACACGCACGTTCCATTATC 59.003 47.619 0.00 0.00 0.00 1.75
2255 2761 1.255342 CGCACGTTCCATTATCAGTCG 59.745 52.381 0.00 0.00 0.00 4.18
2271 2777 5.422666 TCAGTCGTAAACAACTCGTCTTA 57.577 39.130 0.00 0.00 0.00 2.10
2301 2809 3.755628 CCCACTGCCTGCACATGC 61.756 66.667 0.00 0.00 42.50 4.06
2304 2812 1.651240 CCACTGCCTGCACATGCTAC 61.651 60.000 5.31 0.00 42.66 3.58
2316 2824 4.745116 TGCTACCGCAGAGAGAGT 57.255 55.556 0.00 0.00 42.25 3.24
2318 2826 0.528017 TGCTACCGCAGAGAGAGTTG 59.472 55.000 0.00 0.00 42.25 3.16
2320 2828 1.468395 GCTACCGCAGAGAGAGTTGTC 60.468 57.143 0.00 0.00 35.78 3.18
2321 2829 1.133407 CTACCGCAGAGAGAGTTGTCC 59.867 57.143 0.00 0.00 0.00 4.02
2368 2876 4.113354 GTGTTTAGCCTCTCCTAATCACG 58.887 47.826 7.14 0.00 37.82 4.35
2370 2878 1.329256 TAGCCTCTCCTAATCACGCC 58.671 55.000 0.00 0.00 0.00 5.68
2377 2885 2.125310 CTAATCACGCCGCCACCA 60.125 61.111 0.00 0.00 0.00 4.17
2393 2901 1.876799 CACCACTGCGTACAAAATCCA 59.123 47.619 0.00 0.00 0.00 3.41
2474 3008 2.666190 TGTCCTGCGCTGCTGAAC 60.666 61.111 9.73 4.80 0.00 3.18
2498 3032 3.822735 GAGTACCACACTACACTACACCA 59.177 47.826 0.00 0.00 37.72 4.17
2499 3033 3.571401 AGTACCACACTACACTACACCAC 59.429 47.826 0.00 0.00 34.98 4.16
2500 3034 2.390696 ACCACACTACACTACACCACA 58.609 47.619 0.00 0.00 0.00 4.17
2501 3035 2.101917 ACCACACTACACTACACCACAC 59.898 50.000 0.00 0.00 0.00 3.82
2502 3036 2.547218 CCACACTACACTACACCACACC 60.547 54.545 0.00 0.00 0.00 4.16
2592 3137 2.329690 CCGTCCAGAGCTCGATCG 59.670 66.667 9.36 9.36 0.00 3.69
2611 3156 4.247380 GCCGGAGCCTGATCCCTG 62.247 72.222 5.05 0.00 35.82 4.45
2615 3160 1.117749 CGGAGCCTGATCCCTGATGA 61.118 60.000 0.00 0.00 35.82 2.92
2640 3191 2.107141 CCGTCCTTGGAGATCCGC 59.893 66.667 0.00 0.00 39.43 5.54
2642 3193 2.586357 GTCCTTGGAGATCCGCGC 60.586 66.667 0.00 0.00 39.43 6.86
2643 3194 4.207281 TCCTTGGAGATCCGCGCG 62.207 66.667 25.67 25.67 39.43 6.86
2680 3231 1.375098 GGCTGCTTCCTCATGTGAGC 61.375 60.000 4.48 0.00 40.75 4.26
2684 3244 1.281899 GCTTCCTCATGTGAGCGTAC 58.718 55.000 4.48 0.00 40.75 3.67
2690 3250 0.879090 TCATGTGAGCGTACGTGACT 59.121 50.000 17.90 5.27 40.60 3.41
2692 3252 0.109272 ATGTGAGCGTACGTGACTGG 60.109 55.000 17.90 0.00 0.00 4.00
2696 3256 2.355363 GCGTACGTGACTGGTGCA 60.355 61.111 17.90 0.00 0.00 4.57
2697 3257 1.736645 GCGTACGTGACTGGTGCAT 60.737 57.895 17.90 0.00 0.00 3.96
2698 3258 1.955529 GCGTACGTGACTGGTGCATG 61.956 60.000 17.90 0.00 0.00 4.06
2699 3259 1.787847 GTACGTGACTGGTGCATGC 59.212 57.895 11.82 11.82 0.00 4.06
2700 3260 1.736282 TACGTGACTGGTGCATGCG 60.736 57.895 14.09 0.35 0.00 4.73
2718 3283 4.575973 ATGCGATGCAGGGAGGGC 62.576 66.667 0.00 0.00 43.65 5.19
2777 3342 2.078849 TGATGAGCTACGTTGTGGTG 57.921 50.000 0.00 0.00 0.00 4.17
2815 3381 1.136085 CGGCAGATACGTGTTTGGTTG 60.136 52.381 0.00 0.00 0.00 3.77
2816 3382 1.199097 GGCAGATACGTGTTTGGTTGG 59.801 52.381 0.00 0.00 0.00 3.77
2817 3383 1.877443 GCAGATACGTGTTTGGTTGGT 59.123 47.619 0.00 0.00 0.00 3.67
2818 3384 2.292292 GCAGATACGTGTTTGGTTGGTT 59.708 45.455 0.00 0.00 0.00 3.67
2819 3385 3.851838 GCAGATACGTGTTTGGTTGGTTG 60.852 47.826 0.00 0.00 0.00 3.77
2820 3386 2.292292 AGATACGTGTTTGGTTGGTTGC 59.708 45.455 0.00 0.00 0.00 4.17
2821 3387 0.377554 TACGTGTTTGGTTGGTTGCG 59.622 50.000 0.00 0.00 0.00 4.85
2822 3388 1.306642 ACGTGTTTGGTTGGTTGCGA 61.307 50.000 0.00 0.00 0.00 5.10
2823 3389 0.591236 CGTGTTTGGTTGGTTGCGAG 60.591 55.000 0.00 0.00 0.00 5.03
2824 3390 0.869880 GTGTTTGGTTGGTTGCGAGC 60.870 55.000 0.00 0.00 0.00 5.03
2825 3391 1.657181 GTTTGGTTGGTTGCGAGCG 60.657 57.895 0.00 0.00 0.00 5.03
2895 3462 3.305516 GCCAGGCCACCACCTTTG 61.306 66.667 5.01 0.00 38.26 2.77
2896 3463 2.198426 CCAGGCCACCACCTTTGT 59.802 61.111 5.01 0.00 38.26 2.83
2898 3465 1.048160 CCAGGCCACCACCTTTGTTT 61.048 55.000 5.01 0.00 38.26 2.83
2899 3466 0.389025 CAGGCCACCACCTTTGTTTC 59.611 55.000 5.01 0.00 38.26 2.78
2900 3467 0.759060 AGGCCACCACCTTTGTTTCC 60.759 55.000 5.01 0.00 36.28 3.13
2902 3469 0.673985 GCCACCACCTTTGTTTCCTC 59.326 55.000 0.00 0.00 0.00 3.71
2903 3470 1.328279 CCACCACCTTTGTTTCCTCC 58.672 55.000 0.00 0.00 0.00 4.30
2904 3471 1.410932 CCACCACCTTTGTTTCCTCCA 60.411 52.381 0.00 0.00 0.00 3.86
2905 3472 1.956477 CACCACCTTTGTTTCCTCCAG 59.044 52.381 0.00 0.00 0.00 3.86
2909 3476 3.023832 CACCTTTGTTTCCTCCAGTGTT 58.976 45.455 0.00 0.00 0.00 3.32
2910 3477 3.023832 ACCTTTGTTTCCTCCAGTGTTG 58.976 45.455 0.00 0.00 0.00 3.33
2915 3482 6.350612 CCTTTGTTTCCTCCAGTGTTGTTTTA 60.351 38.462 0.00 0.00 0.00 1.52
2928 3495 3.003793 TGTTGTTTTACGCTGCATGCTAA 59.996 39.130 20.33 6.12 40.11 3.09
2929 3496 4.165779 GTTGTTTTACGCTGCATGCTAAT 58.834 39.130 20.33 4.43 40.11 1.73
2930 3497 4.014847 TGTTTTACGCTGCATGCTAATC 57.985 40.909 20.33 4.23 40.11 1.75
3039 3639 0.770557 AGGGGCTAGACACCAAACCA 60.771 55.000 0.00 0.00 0.00 3.67
3040 3640 0.322546 GGGGCTAGACACCAAACCAG 60.323 60.000 0.00 0.00 0.00 4.00
3073 3673 1.377202 ACTGCCGCATACCACCAAG 60.377 57.895 0.00 0.00 0.00 3.61
3076 3676 2.120909 GCCGCATACCACCAAGCAT 61.121 57.895 0.00 0.00 0.00 3.79
3106 3706 2.760634 ACAAGGATGTGCGATGTGTA 57.239 45.000 0.00 0.00 38.69 2.90
3114 3715 2.345876 TGTGCGATGTGTAGTCATTGG 58.654 47.619 0.00 0.00 31.79 3.16
3116 3717 1.277842 TGCGATGTGTAGTCATTGGGT 59.722 47.619 0.00 0.00 31.79 4.51
3149 3759 1.285280 AGTATGCAGTTGGGCCACTA 58.715 50.000 5.23 0.00 0.00 2.74
3150 3760 1.065418 AGTATGCAGTTGGGCCACTAC 60.065 52.381 5.23 2.01 0.00 2.73
3151 3761 0.107897 TATGCAGTTGGGCCACTACG 60.108 55.000 5.23 0.65 0.00 3.51
3152 3762 2.032071 GCAGTTGGGCCACTACGT 59.968 61.111 5.23 0.00 0.00 3.57
3153 3763 1.294138 GCAGTTGGGCCACTACGTA 59.706 57.895 5.23 0.00 0.00 3.57
3247 3857 4.899687 CGCGTGCATGCAGATGGC 62.900 66.667 29.23 20.01 45.13 4.40
3279 3892 0.112412 GGTGGCCTTTTCCTCCTTGA 59.888 55.000 3.32 0.00 36.94 3.02
3286 3899 2.494059 CTTTTCCTCCTTGAACGCAGA 58.506 47.619 0.00 0.00 0.00 4.26
3300 3913 3.135457 CAGACGCATGGCATGGCA 61.135 61.111 27.48 25.52 0.00 4.92
3329 3942 2.598673 CGAGTGTGAGAGTGATCGATCG 60.599 54.545 20.03 9.36 32.13 3.69
3473 4119 2.742053 GGATACGCTTTGCTTGTCTGAA 59.258 45.455 0.00 0.00 0.00 3.02
3506 4155 8.638629 AAGAAGCATATCTTATCCGTAGTAGT 57.361 34.615 0.00 0.00 37.88 2.73
3507 4156 9.736414 AAGAAGCATATCTTATCCGTAGTAGTA 57.264 33.333 0.00 0.00 37.88 1.82
3509 4158 9.381033 GAAGCATATCTTATCCGTAGTAGTAGA 57.619 37.037 0.00 0.00 34.56 2.59
3511 4160 9.332502 AGCATATCTTATCCGTAGTAGTAGATG 57.667 37.037 0.00 0.00 0.00 2.90
3512 4161 9.111613 GCATATCTTATCCGTAGTAGTAGATGT 57.888 37.037 0.00 0.00 0.00 3.06
3560 4216 4.267928 CGTAAGCACTAGACCATTTACTGC 59.732 45.833 0.00 0.00 0.00 4.40
3757 4427 3.057736 ACTTGCTGCATCATGACAACTTC 60.058 43.478 1.84 0.00 0.00 3.01
3761 4431 3.672511 GCTGCATCATGACAACTTCCTTG 60.673 47.826 0.00 0.00 35.77 3.61
3855 4537 7.686438 TGCAGTTCTCTGAATAATTTTGCTA 57.314 32.000 0.00 0.00 43.76 3.49
3877 4559 2.284995 GGACCTGGGTGCTCCTCT 60.285 66.667 4.53 0.00 36.20 3.69
3985 4681 1.023502 GAGGTGAGTCGCTAGTACCC 58.976 60.000 3.25 0.00 31.80 3.69
4032 4728 1.373497 CGGCACAGGTGACTCACTC 60.373 63.158 9.08 0.00 40.21 3.51
4048 4767 8.064814 GTGACTCACTCAACTAACTGAATTTTC 58.935 37.037 1.58 0.00 0.00 2.29
4087 4806 1.842052 ACCTTCTCTTCCTCGAGTCC 58.158 55.000 12.31 0.00 32.83 3.85
4172 4896 1.594331 GACCGGTAATCCTCCATTGC 58.406 55.000 7.34 0.00 0.00 3.56
4178 4902 3.084786 GGTAATCCTCCATTGCATAGCC 58.915 50.000 0.00 0.00 0.00 3.93
4179 4903 2.299326 AATCCTCCATTGCATAGCCC 57.701 50.000 0.00 0.00 0.00 5.19
4180 4904 1.453633 ATCCTCCATTGCATAGCCCT 58.546 50.000 0.00 0.00 0.00 5.19
4181 4905 1.225373 TCCTCCATTGCATAGCCCTT 58.775 50.000 0.00 0.00 0.00 3.95
4182 4906 1.133699 TCCTCCATTGCATAGCCCTTG 60.134 52.381 0.00 0.00 0.00 3.61
4183 4907 1.325355 CTCCATTGCATAGCCCTTGG 58.675 55.000 0.00 0.00 0.00 3.61
4184 4908 0.106066 TCCATTGCATAGCCCTTGGG 60.106 55.000 0.32 0.32 0.00 4.12
4237 4966 6.711277 TGTAATCTAGAGGTTTTGATGTGCT 58.289 36.000 0.00 0.00 0.00 4.40
4406 5151 4.207891 TCCATAGTTCTCTGGCTTTCAC 57.792 45.455 0.20 0.00 32.30 3.18
4426 5177 2.893489 ACAGCACCAGGAGAAAAATTCC 59.107 45.455 0.00 0.00 34.83 3.01
4427 5178 2.892852 CAGCACCAGGAGAAAAATTCCA 59.107 45.455 0.00 0.00 37.18 3.53
4441 5195 7.433680 AGAAAAATTCCAATAACTGTCACACC 58.566 34.615 0.00 0.00 0.00 4.16
4468 5222 6.306199 CACCATGATAGGAATAATGACCCAA 58.694 40.000 0.00 0.00 0.00 4.12
4490 5251 8.576442 CCCAACTGAAAAAGTACTTACATTCAT 58.424 33.333 21.79 12.06 38.56 2.57
4644 5415 4.154737 CACTCAAAAGCAGCTACAGCATTA 59.845 41.667 0.00 0.00 45.16 1.90
4681 5454 2.315925 TCGCACTGAATCTTCCATCC 57.684 50.000 0.00 0.00 0.00 3.51
4687 5461 4.741342 CACTGAATCTTCCATCCTTTTGC 58.259 43.478 0.00 0.00 0.00 3.68
4703 5483 4.340263 CTTTTGCTGATCGTGATGATGTG 58.660 43.478 0.00 0.00 37.47 3.21
4790 5586 1.141665 CACGCCATGATCTCCGACA 59.858 57.895 0.00 0.00 0.00 4.35
4846 5642 2.733593 AGCGCCAACGTCTCGAAC 60.734 61.111 2.29 0.00 42.83 3.95
4948 5753 3.063084 GCCACCTCCGACTCGTCT 61.063 66.667 0.00 0.00 0.00 4.18
5140 5957 1.580658 AGGATCCCCTACAGATGGACA 59.419 52.381 8.55 0.00 42.15 4.02
5164 5993 3.144506 CTGCAGGTTCAGTTTCAGACAT 58.855 45.455 5.57 0.00 0.00 3.06
5185 6014 5.179555 ACATACTTTTCTTCTCCGTTCTTGC 59.820 40.000 0.00 0.00 0.00 4.01
5190 6019 4.801330 TTCTTCTCCGTTCTTGCTATGA 57.199 40.909 0.00 0.00 0.00 2.15
5192 6021 2.961526 TCTCCGTTCTTGCTATGACC 57.038 50.000 0.00 0.00 0.00 4.02
5194 6023 0.892755 TCCGTTCTTGCTATGACCGT 59.107 50.000 0.00 0.00 0.00 4.83
5197 6034 1.726853 GTTCTTGCTATGACCGTGCT 58.273 50.000 0.00 0.00 0.00 4.40
5557 6437 3.392285 AGGTACTCATGATGCCATTGCTA 59.608 43.478 0.00 0.00 38.71 3.49
5597 6487 1.746220 ACAACAAAGCGGCACTGTAAA 59.254 42.857 1.45 0.00 0.00 2.01
5644 6534 2.832129 GTGGTCTGAGGTGTATGAAGGA 59.168 50.000 0.00 0.00 0.00 3.36
5683 6573 4.175337 GGCGCAGGGCATGAGGTA 62.175 66.667 10.83 0.00 46.16 3.08
5765 6708 0.811281 GCCCAAATCCTGAAGGTTCG 59.189 55.000 0.00 0.00 36.34 3.95
6127 7125 9.865321 ATGAACACCAAGAAAATTTCTCATATG 57.135 29.630 8.86 7.91 39.61 1.78
6128 7126 8.306038 TGAACACCAAGAAAATTTCTCATATGG 58.694 33.333 17.86 17.86 39.61 2.74
6129 7127 7.781324 ACACCAAGAAAATTTCTCATATGGT 57.219 32.000 18.89 18.89 44.12 3.55
6445 7453 3.462021 GCAGCATATCTTCTTCTTCGGT 58.538 45.455 0.00 0.00 0.00 4.69
6592 7637 1.476891 GGGCGGGGAAAAGAGAAAATC 59.523 52.381 0.00 0.00 0.00 2.17
6601 7646 5.465051 GGAAAAGAGAAAATCCACTTCAGC 58.535 41.667 0.00 0.00 32.08 4.26
6609 7654 0.693049 ATCCACTTCAGCCTCCGTTT 59.307 50.000 0.00 0.00 0.00 3.60
6610 7655 0.472471 TCCACTTCAGCCTCCGTTTT 59.528 50.000 0.00 0.00 0.00 2.43
6611 7656 1.133915 TCCACTTCAGCCTCCGTTTTT 60.134 47.619 0.00 0.00 0.00 1.94
6630 7675 3.708563 TTTTTGGAACGAAGGCTCAAG 57.291 42.857 0.00 0.00 0.00 3.02
6631 7676 2.631160 TTTGGAACGAAGGCTCAAGA 57.369 45.000 0.00 0.00 0.00 3.02
6632 7677 2.631160 TTGGAACGAAGGCTCAAGAA 57.369 45.000 0.00 0.00 0.00 2.52
6633 7678 2.169832 TGGAACGAAGGCTCAAGAAG 57.830 50.000 0.00 0.00 0.00 2.85
6634 7679 1.691976 TGGAACGAAGGCTCAAGAAGA 59.308 47.619 0.00 0.00 0.00 2.87
6642 7687 2.985456 CTCAAGAAGAGCCCGGCT 59.015 61.111 13.16 13.16 43.88 5.52
6643 7688 1.298014 CTCAAGAAGAGCCCGGCTT 59.702 57.895 14.70 0.00 39.88 4.35
6644 7689 0.322008 CTCAAGAAGAGCCCGGCTTT 60.322 55.000 14.70 4.65 39.88 3.51
6645 7690 0.606401 TCAAGAAGAGCCCGGCTTTG 60.606 55.000 14.70 13.91 39.88 2.77
6646 7691 0.606401 CAAGAAGAGCCCGGCTTTGA 60.606 55.000 14.70 0.00 39.88 2.69
6647 7692 0.110486 AAGAAGAGCCCGGCTTTGAA 59.890 50.000 14.70 0.00 39.88 2.69
6648 7693 0.329596 AGAAGAGCCCGGCTTTGAAT 59.670 50.000 14.70 0.00 39.88 2.57
6649 7694 1.177401 GAAGAGCCCGGCTTTGAATT 58.823 50.000 14.70 4.04 39.88 2.17
6650 7695 2.026262 AGAAGAGCCCGGCTTTGAATTA 60.026 45.455 14.70 0.00 39.88 1.40
6651 7696 2.507407 AGAGCCCGGCTTTGAATTAA 57.493 45.000 14.70 0.00 39.88 1.40
6652 7697 2.092323 AGAGCCCGGCTTTGAATTAAC 58.908 47.619 14.70 0.00 39.88 2.01
6653 7698 1.816224 GAGCCCGGCTTTGAATTAACA 59.184 47.619 14.70 0.00 39.88 2.41
6654 7699 2.230266 GAGCCCGGCTTTGAATTAACAA 59.770 45.455 14.70 0.00 39.88 2.83
6655 7700 2.630580 AGCCCGGCTTTGAATTAACAAA 59.369 40.909 5.94 0.00 33.89 2.83
6668 7713 6.791303 TGAATTAACAAAGATATCAACCGGC 58.209 36.000 0.00 0.00 0.00 6.13
6669 7714 5.767816 ATTAACAAAGATATCAACCGGCC 57.232 39.130 0.00 0.00 0.00 6.13
6670 7715 2.799126 ACAAAGATATCAACCGGCCA 57.201 45.000 0.00 0.00 0.00 5.36
6671 7716 2.643551 ACAAAGATATCAACCGGCCAG 58.356 47.619 0.00 0.00 0.00 4.85
6673 7718 1.507140 AAGATATCAACCGGCCAGGA 58.493 50.000 18.74 3.02 45.00 3.86
6674 7719 1.734655 AGATATCAACCGGCCAGGAT 58.265 50.000 18.74 10.02 45.00 3.24
6675 7720 2.057922 AGATATCAACCGGCCAGGATT 58.942 47.619 18.74 7.79 45.00 3.01
6676 7721 3.248024 AGATATCAACCGGCCAGGATTA 58.752 45.455 18.74 1.01 45.00 1.75
6677 7722 2.922740 TATCAACCGGCCAGGATTAC 57.077 50.000 18.74 0.00 45.00 1.89
6678 7723 0.916086 ATCAACCGGCCAGGATTACA 59.084 50.000 18.74 0.75 45.00 2.41
6679 7724 0.693622 TCAACCGGCCAGGATTACAA 59.306 50.000 18.74 0.00 45.00 2.41
6680 7725 1.094785 CAACCGGCCAGGATTACAAG 58.905 55.000 18.74 0.00 45.00 3.16
6681 7726 0.034477 AACCGGCCAGGATTACAAGG 60.034 55.000 18.74 2.64 45.00 3.61
6682 7727 0.912487 ACCGGCCAGGATTACAAGGA 60.912 55.000 18.74 0.00 45.00 3.36
6683 7728 0.463833 CCGGCCAGGATTACAAGGAC 60.464 60.000 2.24 0.00 45.00 3.85
6684 7729 0.251916 CGGCCAGGATTACAAGGACA 59.748 55.000 2.24 0.00 0.00 4.02
6685 7730 1.339631 CGGCCAGGATTACAAGGACAA 60.340 52.381 2.24 0.00 0.00 3.18
6686 7731 2.092323 GGCCAGGATTACAAGGACAAC 58.908 52.381 0.00 0.00 0.00 3.32
6687 7732 2.092323 GCCAGGATTACAAGGACAACC 58.908 52.381 0.00 0.00 0.00 3.77
6688 7733 2.356135 CCAGGATTACAAGGACAACCG 58.644 52.381 0.00 0.00 41.83 4.44
6689 7734 1.737793 CAGGATTACAAGGACAACCGC 59.262 52.381 0.00 0.00 41.83 5.68
6690 7735 1.628846 AGGATTACAAGGACAACCGCT 59.371 47.619 0.00 0.00 41.83 5.52
6691 7736 2.039879 AGGATTACAAGGACAACCGCTT 59.960 45.455 0.00 0.00 41.83 4.68
6692 7737 3.262405 AGGATTACAAGGACAACCGCTTA 59.738 43.478 0.00 0.00 41.83 3.09
6693 7738 3.373130 GGATTACAAGGACAACCGCTTAC 59.627 47.826 0.00 0.00 41.83 2.34
6694 7739 3.472283 TTACAAGGACAACCGCTTACA 57.528 42.857 0.00 0.00 41.83 2.41
6695 7740 2.335316 ACAAGGACAACCGCTTACAA 57.665 45.000 0.00 0.00 41.83 2.41
6696 7741 1.944709 ACAAGGACAACCGCTTACAAC 59.055 47.619 0.00 0.00 41.83 3.32
6697 7742 1.070175 CAAGGACAACCGCTTACAACG 60.070 52.381 0.00 0.00 41.83 4.10
6698 7743 1.205820 GGACAACCGCTTACAACGC 59.794 57.895 0.00 0.00 0.00 4.84
6699 7744 1.500512 GGACAACCGCTTACAACGCA 61.501 55.000 0.00 0.00 0.00 5.24
6700 7745 0.305313 GACAACCGCTTACAACGCAA 59.695 50.000 0.00 0.00 0.00 4.85
6701 7746 0.733729 ACAACCGCTTACAACGCAAA 59.266 45.000 0.00 0.00 0.00 3.68
6702 7747 1.268335 ACAACCGCTTACAACGCAAAG 60.268 47.619 0.00 0.00 0.00 2.77
6703 7748 1.003331 CAACCGCTTACAACGCAAAGA 60.003 47.619 0.00 0.00 0.00 2.52
6704 7749 1.301423 ACCGCTTACAACGCAAAGAA 58.699 45.000 0.00 0.00 0.00 2.52
6705 7750 1.671845 ACCGCTTACAACGCAAAGAAA 59.328 42.857 0.00 0.00 0.00 2.52
6706 7751 2.097791 ACCGCTTACAACGCAAAGAAAA 59.902 40.909 0.00 0.00 0.00 2.29
6707 7752 2.719046 CCGCTTACAACGCAAAGAAAAG 59.281 45.455 0.00 0.00 0.00 2.27
6708 7753 2.719046 CGCTTACAACGCAAAGAAAAGG 59.281 45.455 0.00 0.00 0.00 3.11
6709 7754 3.547214 CGCTTACAACGCAAAGAAAAGGA 60.547 43.478 0.00 0.00 0.00 3.36
6710 7755 4.356289 GCTTACAACGCAAAGAAAAGGAA 58.644 39.130 0.00 0.00 0.00 3.36
6711 7756 4.801516 GCTTACAACGCAAAGAAAAGGAAA 59.198 37.500 0.00 0.00 0.00 3.13
6712 7757 5.276207 GCTTACAACGCAAAGAAAAGGAAAC 60.276 40.000 0.00 0.00 0.00 2.78
6713 7758 3.517602 ACAACGCAAAGAAAAGGAAACC 58.482 40.909 0.00 0.00 0.00 3.27
6714 7759 2.485266 ACGCAAAGAAAAGGAAACCG 57.515 45.000 0.00 0.00 0.00 4.44
6715 7760 2.018515 ACGCAAAGAAAAGGAAACCGA 58.981 42.857 0.00 0.00 0.00 4.69
6716 7761 2.032924 ACGCAAAGAAAAGGAAACCGAG 59.967 45.455 0.00 0.00 0.00 4.63
6717 7762 2.394708 GCAAAGAAAAGGAAACCGAGC 58.605 47.619 0.00 0.00 0.00 5.03
6718 7763 2.650608 CAAAGAAAAGGAAACCGAGCG 58.349 47.619 0.00 0.00 0.00 5.03
6719 7764 2.249844 AAGAAAAGGAAACCGAGCGA 57.750 45.000 0.00 0.00 0.00 4.93
6720 7765 1.509703 AGAAAAGGAAACCGAGCGAC 58.490 50.000 0.00 0.00 0.00 5.19
6721 7766 0.163146 GAAAAGGAAACCGAGCGACG 59.837 55.000 0.00 0.00 42.18 5.12
6730 7775 4.303853 CGAGCGACGGATACAAGG 57.696 61.111 0.00 0.00 38.46 3.61
6731 7776 1.725665 CGAGCGACGGATACAAGGA 59.274 57.895 0.00 0.00 38.46 3.36
6732 7777 0.099968 CGAGCGACGGATACAAGGAA 59.900 55.000 0.00 0.00 38.46 3.36
6733 7778 1.557651 GAGCGACGGATACAAGGAAC 58.442 55.000 0.00 0.00 0.00 3.62
6734 7779 4.392644 CGAGCGACGGATACAAGGAACT 62.393 54.545 0.00 0.00 38.47 3.01
6735 7780 1.134560 AGCGACGGATACAAGGAACTC 59.865 52.381 0.00 0.00 38.49 3.01
6736 7781 1.135199 GCGACGGATACAAGGAACTCA 60.135 52.381 0.00 0.00 38.49 3.41
6737 7782 2.673043 GCGACGGATACAAGGAACTCAA 60.673 50.000 0.00 0.00 38.49 3.02
6738 7783 3.179830 CGACGGATACAAGGAACTCAAG 58.820 50.000 0.00 0.00 38.49 3.02
6739 7784 2.930682 GACGGATACAAGGAACTCAAGC 59.069 50.000 0.00 0.00 38.49 4.01
6740 7785 2.301870 ACGGATACAAGGAACTCAAGCA 59.698 45.455 0.00 0.00 38.49 3.91
6741 7786 3.244422 ACGGATACAAGGAACTCAAGCAA 60.244 43.478 0.00 0.00 38.49 3.91
6742 7787 3.751175 CGGATACAAGGAACTCAAGCAAA 59.249 43.478 0.00 0.00 38.49 3.68
6743 7788 4.215399 CGGATACAAGGAACTCAAGCAAAA 59.785 41.667 0.00 0.00 38.49 2.44
6744 7789 5.461526 GGATACAAGGAACTCAAGCAAAAC 58.538 41.667 0.00 0.00 38.49 2.43
6745 7790 5.009610 GGATACAAGGAACTCAAGCAAAACA 59.990 40.000 0.00 0.00 38.49 2.83
6746 7791 4.799564 ACAAGGAACTCAAGCAAAACAA 57.200 36.364 0.00 0.00 38.49 2.83
6747 7792 4.494484 ACAAGGAACTCAAGCAAAACAAC 58.506 39.130 0.00 0.00 38.49 3.32
6748 7793 4.220602 ACAAGGAACTCAAGCAAAACAACT 59.779 37.500 0.00 0.00 38.49 3.16
6749 7794 4.639135 AGGAACTCAAGCAAAACAACTC 57.361 40.909 0.00 0.00 0.00 3.01
6750 7795 4.016444 AGGAACTCAAGCAAAACAACTCA 58.984 39.130 0.00 0.00 0.00 3.41
6751 7796 4.462483 AGGAACTCAAGCAAAACAACTCAA 59.538 37.500 0.00 0.00 0.00 3.02
6752 7797 4.800471 GGAACTCAAGCAAAACAACTCAAG 59.200 41.667 0.00 0.00 0.00 3.02
6753 7798 4.376340 ACTCAAGCAAAACAACTCAAGG 57.624 40.909 0.00 0.00 0.00 3.61
6754 7799 3.118542 CTCAAGCAAAACAACTCAAGGC 58.881 45.455 0.00 0.00 0.00 4.35
6755 7800 2.495270 TCAAGCAAAACAACTCAAGGCA 59.505 40.909 0.00 0.00 0.00 4.75
6756 7801 2.861935 CAAGCAAAACAACTCAAGGCAG 59.138 45.455 0.00 0.00 0.00 4.85
6757 7802 1.202452 AGCAAAACAACTCAAGGCAGC 60.202 47.619 0.00 0.00 0.00 5.25
6758 7803 1.471327 GCAAAACAACTCAAGGCAGCA 60.471 47.619 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.210331 CTCCCCTAATTTTCAGATGGGTG 58.790 47.826 0.00 0.00 33.13 4.61
1 2 3.205282 CCTCCCCTAATTTTCAGATGGGT 59.795 47.826 0.00 0.00 33.13 4.51
2 3 3.437052 CCCTCCCCTAATTTTCAGATGGG 60.437 52.174 0.00 0.00 34.68 4.00
6 7 2.214201 CCCCCTCCCCTAATTTTCAGA 58.786 52.381 0.00 0.00 0.00 3.27
7 8 2.755952 CCCCCTCCCCTAATTTTCAG 57.244 55.000 0.00 0.00 0.00 3.02
23 24 1.230212 CTAAACATGCCCCTCCCCC 59.770 63.158 0.00 0.00 0.00 5.40
24 25 0.335019 AACTAAACATGCCCCTCCCC 59.665 55.000 0.00 0.00 0.00 4.81
25 26 1.474330 CAACTAAACATGCCCCTCCC 58.526 55.000 0.00 0.00 0.00 4.30
26 27 1.272480 ACCAACTAAACATGCCCCTCC 60.272 52.381 0.00 0.00 0.00 4.30
27 28 2.215942 ACCAACTAAACATGCCCCTC 57.784 50.000 0.00 0.00 0.00 4.30
28 29 2.694616 AACCAACTAAACATGCCCCT 57.305 45.000 0.00 0.00 0.00 4.79
29 30 3.692690 TCTAACCAACTAAACATGCCCC 58.307 45.455 0.00 0.00 0.00 5.80
30 31 5.336451 CCTTTCTAACCAACTAAACATGCCC 60.336 44.000 0.00 0.00 0.00 5.36
31 32 5.475564 TCCTTTCTAACCAACTAAACATGCC 59.524 40.000 0.00 0.00 0.00 4.40
32 33 6.206829 ACTCCTTTCTAACCAACTAAACATGC 59.793 38.462 0.00 0.00 0.00 4.06
33 34 7.661847 AGACTCCTTTCTAACCAACTAAACATG 59.338 37.037 0.00 0.00 0.00 3.21
34 35 7.661847 CAGACTCCTTTCTAACCAACTAAACAT 59.338 37.037 0.00 0.00 0.00 2.71
35 36 6.990349 CAGACTCCTTTCTAACCAACTAAACA 59.010 38.462 0.00 0.00 0.00 2.83
36 37 6.990939 ACAGACTCCTTTCTAACCAACTAAAC 59.009 38.462 0.00 0.00 0.00 2.01
37 38 7.133133 ACAGACTCCTTTCTAACCAACTAAA 57.867 36.000 0.00 0.00 0.00 1.85
38 39 6.742559 ACAGACTCCTTTCTAACCAACTAA 57.257 37.500 0.00 0.00 0.00 2.24
39 40 7.236529 TCTACAGACTCCTTTCTAACCAACTA 58.763 38.462 0.00 0.00 0.00 2.24
40 41 6.075984 TCTACAGACTCCTTTCTAACCAACT 58.924 40.000 0.00 0.00 0.00 3.16
41 42 6.342338 TCTACAGACTCCTTTCTAACCAAC 57.658 41.667 0.00 0.00 0.00 3.77
42 43 6.518537 GCTTCTACAGACTCCTTTCTAACCAA 60.519 42.308 0.00 0.00 0.00 3.67
43 44 5.047235 GCTTCTACAGACTCCTTTCTAACCA 60.047 44.000 0.00 0.00 0.00 3.67
44 45 5.412640 GCTTCTACAGACTCCTTTCTAACC 58.587 45.833 0.00 0.00 0.00 2.85
45 46 5.186215 AGGCTTCTACAGACTCCTTTCTAAC 59.814 44.000 0.00 0.00 34.67 2.34
46 47 5.186021 CAGGCTTCTACAGACTCCTTTCTAA 59.814 44.000 0.00 0.00 34.67 2.10
47 48 4.707448 CAGGCTTCTACAGACTCCTTTCTA 59.293 45.833 0.00 0.00 34.67 2.10
48 49 3.513515 CAGGCTTCTACAGACTCCTTTCT 59.486 47.826 0.00 0.00 34.67 2.52
49 50 3.259625 ACAGGCTTCTACAGACTCCTTTC 59.740 47.826 0.00 0.00 34.67 2.62
50 51 3.243724 ACAGGCTTCTACAGACTCCTTT 58.756 45.455 0.00 0.00 34.67 3.11
51 52 2.896039 ACAGGCTTCTACAGACTCCTT 58.104 47.619 0.00 0.00 34.67 3.36
52 53 2.614134 ACAGGCTTCTACAGACTCCT 57.386 50.000 0.00 0.00 34.67 3.69
53 54 3.954904 TCATACAGGCTTCTACAGACTCC 59.045 47.826 0.00 0.00 34.67 3.85
54 55 4.202070 GGTCATACAGGCTTCTACAGACTC 60.202 50.000 0.00 0.00 34.67 3.36
55 56 3.702045 GGTCATACAGGCTTCTACAGACT 59.298 47.826 0.00 0.00 44.82 3.24
56 57 3.181474 GGGTCATACAGGCTTCTACAGAC 60.181 52.174 0.00 0.00 0.00 3.51
57 58 3.031736 GGGTCATACAGGCTTCTACAGA 58.968 50.000 0.00 0.00 0.00 3.41
58 59 2.103263 GGGGTCATACAGGCTTCTACAG 59.897 54.545 0.00 0.00 0.00 2.74
59 60 2.116238 GGGGTCATACAGGCTTCTACA 58.884 52.381 0.00 0.00 0.00 2.74
60 61 1.068741 CGGGGTCATACAGGCTTCTAC 59.931 57.143 0.00 0.00 0.00 2.59
61 62 1.342674 ACGGGGTCATACAGGCTTCTA 60.343 52.381 0.00 0.00 0.00 2.10
62 63 0.617820 ACGGGGTCATACAGGCTTCT 60.618 55.000 0.00 0.00 0.00 2.85
63 64 1.117150 TACGGGGTCATACAGGCTTC 58.883 55.000 0.00 0.00 0.00 3.86
64 65 0.828677 GTACGGGGTCATACAGGCTT 59.171 55.000 0.00 0.00 0.00 4.35
65 66 1.389609 CGTACGGGGTCATACAGGCT 61.390 60.000 7.57 0.00 0.00 4.58
66 67 1.066918 CGTACGGGGTCATACAGGC 59.933 63.158 7.57 0.00 0.00 4.85
67 68 0.383231 GACGTACGGGGTCATACAGG 59.617 60.000 21.06 0.00 34.56 4.00
68 69 1.386533 AGACGTACGGGGTCATACAG 58.613 55.000 21.06 0.00 36.87 2.74
69 70 2.564771 CTAGACGTACGGGGTCATACA 58.435 52.381 21.06 0.00 36.87 2.29
70 71 1.265365 GCTAGACGTACGGGGTCATAC 59.735 57.143 21.06 0.00 36.87 2.39
71 72 1.134128 TGCTAGACGTACGGGGTCATA 60.134 52.381 21.06 2.14 36.87 2.15
72 73 0.394762 TGCTAGACGTACGGGGTCAT 60.395 55.000 21.06 0.00 36.87 3.06
73 74 0.394762 ATGCTAGACGTACGGGGTCA 60.395 55.000 21.06 10.67 36.87 4.02
74 75 0.743097 AATGCTAGACGTACGGGGTC 59.257 55.000 21.06 8.28 34.62 4.46
75 76 0.743097 GAATGCTAGACGTACGGGGT 59.257 55.000 21.06 5.86 0.00 4.95
76 77 1.030457 AGAATGCTAGACGTACGGGG 58.970 55.000 21.06 7.38 0.00 5.73
77 78 2.460918 CAAGAATGCTAGACGTACGGG 58.539 52.381 21.06 7.74 0.00 5.28
78 79 2.098607 TCCAAGAATGCTAGACGTACGG 59.901 50.000 21.06 2.24 0.00 4.02
79 80 3.064958 TCTCCAAGAATGCTAGACGTACG 59.935 47.826 15.01 15.01 0.00 3.67
80 81 4.335874 TCTCTCCAAGAATGCTAGACGTAC 59.664 45.833 0.00 0.00 0.00 3.67
81 82 4.524053 TCTCTCCAAGAATGCTAGACGTA 58.476 43.478 0.00 0.00 0.00 3.57
82 83 3.357203 TCTCTCCAAGAATGCTAGACGT 58.643 45.455 0.00 0.00 0.00 4.34
83 84 4.377839 TTCTCTCCAAGAATGCTAGACG 57.622 45.455 0.00 0.00 39.12 4.18
84 85 7.622893 AATTTTCTCTCCAAGAATGCTAGAC 57.377 36.000 0.00 0.00 43.50 2.59
85 86 8.543774 AGTAATTTTCTCTCCAAGAATGCTAGA 58.456 33.333 0.00 0.00 43.50 2.43
86 87 8.729805 AGTAATTTTCTCTCCAAGAATGCTAG 57.270 34.615 0.00 0.00 43.50 3.42
87 88 9.520515 AAAGTAATTTTCTCTCCAAGAATGCTA 57.479 29.630 0.00 0.00 43.50 3.49
88 89 8.302438 CAAAGTAATTTTCTCTCCAAGAATGCT 58.698 33.333 0.00 0.00 43.50 3.79
89 90 8.299570 TCAAAGTAATTTTCTCTCCAAGAATGC 58.700 33.333 0.00 0.00 43.50 3.56
93 94 8.850156 CCTTTCAAAGTAATTTTCTCTCCAAGA 58.150 33.333 0.00 0.00 0.00 3.02
94 95 8.633561 ACCTTTCAAAGTAATTTTCTCTCCAAG 58.366 33.333 0.00 0.00 0.00 3.61
95 96 8.533569 ACCTTTCAAAGTAATTTTCTCTCCAA 57.466 30.769 0.00 0.00 0.00 3.53
96 97 8.533569 AACCTTTCAAAGTAATTTTCTCTCCA 57.466 30.769 0.00 0.00 0.00 3.86
138 139 9.109393 CAATAATGCTAGAGCTACAAAAACCTA 57.891 33.333 2.72 0.00 42.66 3.08
139 140 7.829211 TCAATAATGCTAGAGCTACAAAAACCT 59.171 33.333 2.72 0.00 42.66 3.50
140 141 7.910683 GTCAATAATGCTAGAGCTACAAAAACC 59.089 37.037 2.72 0.00 42.66 3.27
162 163 4.589675 GGGTGGTTGGCCGGTCAA 62.590 66.667 19.68 19.68 37.67 3.18
180 181 1.153958 GTGGTAGGTACGTGGCGTC 60.154 63.158 0.00 0.00 41.54 5.19
206 211 0.171007 GCACAACATGATGGGTTCCG 59.829 55.000 7.10 0.00 0.00 4.30
212 217 1.129251 GACGAGTGCACAACATGATGG 59.871 52.381 21.04 0.00 0.00 3.51
214 219 1.002430 AGGACGAGTGCACAACATGAT 59.998 47.619 21.04 0.00 0.00 2.45
216 221 1.726791 GTAGGACGAGTGCACAACATG 59.273 52.381 21.04 5.95 0.00 3.21
267 274 3.610040 AAAGTCACTGTGTCTGTGTGA 57.390 42.857 8.27 0.00 38.24 3.58
303 316 3.139077 AGGTTTTACGAGCTTTCTGTGG 58.861 45.455 0.00 0.00 0.00 4.17
322 335 3.343941 TGGGATTTACGAGTGGAAAGG 57.656 47.619 0.00 0.00 0.00 3.11
332 345 0.947244 GGCTGCAGATGGGATTTACG 59.053 55.000 20.43 0.00 0.00 3.18
366 379 1.600957 CTCCATGCGCTATGAAACAGG 59.399 52.381 17.72 4.13 39.21 4.00
468 485 1.207488 ACTCCAGCTACCATTGGGCA 61.207 55.000 7.78 0.00 37.90 5.36
471 488 1.742761 CACACTCCAGCTACCATTGG 58.257 55.000 0.00 0.00 35.74 3.16
474 491 0.692476 TTGCACACTCCAGCTACCAT 59.308 50.000 0.00 0.00 0.00 3.55
562 594 1.297451 CCTACGTAGAGTGCGTCGC 60.297 63.158 24.15 11.10 42.85 5.19
564 596 1.028868 ACCCCTACGTAGAGTGCGTC 61.029 60.000 24.15 0.00 42.85 5.19
566 598 1.602311 ATACCCCTACGTAGAGTGCG 58.398 55.000 24.15 6.49 0.00 5.34
581 613 1.066152 GTCGACGACCTTGGGTATACC 59.934 57.143 17.25 13.99 35.25 2.73
582 614 1.268234 CGTCGACGACCTTGGGTATAC 60.268 57.143 33.35 0.00 43.02 1.47
583 615 1.016627 CGTCGACGACCTTGGGTATA 58.983 55.000 33.35 0.00 43.02 1.47
890 939 2.284150 CGCAGTGGTATTTATCGTGGTG 59.716 50.000 0.00 0.00 0.00 4.17
893 942 1.260561 GGCGCAGTGGTATTTATCGTG 59.739 52.381 10.83 0.00 0.00 4.35
1173 1241 2.879462 CCGGAGTACTGCGCGAAC 60.879 66.667 28.98 1.09 43.20 3.95
1290 1358 0.250209 TGGTTTGCTTACCGCCGTTA 60.250 50.000 3.83 0.00 41.28 3.18
1307 1375 5.654497 GAAGGAATTAAGGAATGTGCTTGG 58.346 41.667 0.00 0.00 0.00 3.61
1326 1399 3.853104 TGGGACAAGCATACGAAGG 57.147 52.632 0.00 0.00 31.92 3.46
1339 1412 2.691409 TCCAGACGAAATCATGGGAC 57.309 50.000 0.00 0.00 33.45 4.46
1340 1413 3.712016 TTTCCAGACGAAATCATGGGA 57.288 42.857 0.00 0.00 35.49 4.37
1348 1421 3.559655 CACACAGTGATTTCCAGACGAAA 59.440 43.478 7.81 0.00 44.49 3.46
1349 1422 3.130633 CACACAGTGATTTCCAGACGAA 58.869 45.455 7.81 0.00 35.23 3.85
1350 1423 2.754472 CACACAGTGATTTCCAGACGA 58.246 47.619 7.81 0.00 35.23 4.20
1351 1424 1.195448 GCACACAGTGATTTCCAGACG 59.805 52.381 7.81 0.00 35.23 4.18
1386 1465 3.312828 CGTGAGAGTGAGTGAAGAAAGG 58.687 50.000 0.00 0.00 0.00 3.11
1475 1562 1.479323 TGGCGAAAGTAAGCGTAGGAT 59.521 47.619 0.00 0.00 0.00 3.24
1600 1687 1.697284 GAGAATCATGGGGCTTTCCC 58.303 55.000 0.00 0.00 46.30 3.97
1638 1725 8.480501 GGTTGGACTTGGAGTAGTATATTGTAA 58.519 37.037 0.00 0.00 0.00 2.41
1639 1726 7.842743 AGGTTGGACTTGGAGTAGTATATTGTA 59.157 37.037 0.00 0.00 0.00 2.41
1681 1768 6.625873 TTACATTAATCTGTGTGTGTGCAA 57.374 33.333 0.00 0.00 0.00 4.08
1682 1769 5.334802 GCTTACATTAATCTGTGTGTGTGCA 60.335 40.000 0.00 0.00 0.00 4.57
1683 1770 5.088739 GCTTACATTAATCTGTGTGTGTGC 58.911 41.667 0.00 0.00 0.00 4.57
1697 1831 3.625764 GCCGTTGGATCTTGCTTACATTA 59.374 43.478 0.00 0.00 0.00 1.90
1723 1857 5.172934 TGTCAAGTTTCAGTTCGTACACTT 58.827 37.500 0.00 0.00 0.00 3.16
1749 1883 3.911137 GCCAAGCTAGCCTGGAAC 58.089 61.111 32.37 14.39 0.00 3.62
1892 2034 1.746787 TCCTCGCTCGCACATTTACTA 59.253 47.619 0.00 0.00 0.00 1.82
1905 2047 1.439228 CATCGGTCATGTCCTCGCT 59.561 57.895 7.41 0.00 0.00 4.93
2011 2153 7.951530 AAAAGCTAAGCAAAACGTAGTAGTA 57.048 32.000 0.00 0.00 45.00 1.82
2012 2154 6.856135 AAAAGCTAAGCAAAACGTAGTAGT 57.144 33.333 0.00 0.00 45.00 2.73
2033 2175 5.579047 TCCCCTCAAGCTTCATATCAAAAA 58.421 37.500 0.00 0.00 0.00 1.94
2041 2183 2.117865 CTCTCTCCCCTCAAGCTTCAT 58.882 52.381 0.00 0.00 0.00 2.57
2045 2187 0.411452 TGACTCTCTCCCCTCAAGCT 59.589 55.000 0.00 0.00 0.00 3.74
2046 2188 0.823460 CTGACTCTCTCCCCTCAAGC 59.177 60.000 0.00 0.00 0.00 4.01
2047 2189 2.025416 TCTCTGACTCTCTCCCCTCAAG 60.025 54.545 0.00 0.00 0.00 3.02
2048 2190 1.996291 TCTCTGACTCTCTCCCCTCAA 59.004 52.381 0.00 0.00 0.00 3.02
2049 2191 1.563879 CTCTCTGACTCTCTCCCCTCA 59.436 57.143 0.00 0.00 0.00 3.86
2050 2192 1.843851 TCTCTCTGACTCTCTCCCCTC 59.156 57.143 0.00 0.00 0.00 4.30
2052 2194 1.843851 TCTCTCTCTGACTCTCTCCCC 59.156 57.143 0.00 0.00 0.00 4.81
2053 2195 3.545703 CTTCTCTCTCTGACTCTCTCCC 58.454 54.545 0.00 0.00 0.00 4.30
2054 2196 3.199946 TCCTTCTCTCTCTGACTCTCTCC 59.800 52.174 0.00 0.00 0.00 3.71
2055 2197 4.487714 TCCTTCTCTCTCTGACTCTCTC 57.512 50.000 0.00 0.00 0.00 3.20
2058 2200 4.380843 TGTTCCTTCTCTCTCTGACTCT 57.619 45.455 0.00 0.00 0.00 3.24
2059 2201 6.038271 GTCTATGTTCCTTCTCTCTCTGACTC 59.962 46.154 0.00 0.00 0.00 3.36
2060 2202 5.885912 GTCTATGTTCCTTCTCTCTCTGACT 59.114 44.000 0.00 0.00 0.00 3.41
2062 2204 5.197451 GGTCTATGTTCCTTCTCTCTCTGA 58.803 45.833 0.00 0.00 0.00 3.27
2063 2205 4.952957 TGGTCTATGTTCCTTCTCTCTCTG 59.047 45.833 0.00 0.00 0.00 3.35
2064 2206 5.199982 TGGTCTATGTTCCTTCTCTCTCT 57.800 43.478 0.00 0.00 0.00 3.10
2075 2563 6.876257 CCTCTAATGCCTAATGGTCTATGTTC 59.124 42.308 0.00 0.00 35.27 3.18
2082 2570 2.784347 GGCCTCTAATGCCTAATGGTC 58.216 52.381 0.00 0.00 45.70 4.02
2083 2571 2.959465 GGCCTCTAATGCCTAATGGT 57.041 50.000 0.00 0.00 45.70 3.55
2091 2579 0.817229 GTCTGCCTGGCCTCTAATGC 60.817 60.000 17.53 0.00 0.00 3.56
2092 2580 0.835941 AGTCTGCCTGGCCTCTAATG 59.164 55.000 17.53 0.00 0.00 1.90
2093 2581 0.835941 CAGTCTGCCTGGCCTCTAAT 59.164 55.000 17.53 0.00 37.54 1.73
2094 2582 0.252239 TCAGTCTGCCTGGCCTCTAA 60.252 55.000 17.53 0.00 41.83 2.10
2095 2583 0.972983 GTCAGTCTGCCTGGCCTCTA 60.973 60.000 17.53 0.00 40.04 2.43
2096 2584 2.121385 TCAGTCTGCCTGGCCTCT 59.879 61.111 17.53 8.80 41.83 3.69
2097 2585 2.116983 TTGTCAGTCTGCCTGGCCTC 62.117 60.000 17.53 6.48 45.61 4.70
2098 2586 1.495579 ATTGTCAGTCTGCCTGGCCT 61.496 55.000 17.53 2.78 45.61 5.19
2099 2587 1.001641 ATTGTCAGTCTGCCTGGCC 60.002 57.895 17.53 0.00 45.61 5.36
2100 2588 1.310933 CCATTGTCAGTCTGCCTGGC 61.311 60.000 12.87 12.87 46.41 4.85
2101 2589 1.310933 GCCATTGTCAGTCTGCCTGG 61.311 60.000 0.00 0.74 41.83 4.45
2102 2590 0.322277 AGCCATTGTCAGTCTGCCTG 60.322 55.000 0.00 0.00 42.97 4.85
2103 2591 0.322277 CAGCCATTGTCAGTCTGCCT 60.322 55.000 0.00 0.00 0.00 4.75
2164 2653 3.295973 TGAGGTGGGCTTATTTATTGCC 58.704 45.455 0.00 0.00 45.42 4.52
2185 2674 4.467795 TCAGAAATGGCAGTAAGCTACTCT 59.532 41.667 0.00 0.00 44.79 3.24
2187 2676 4.826274 TCAGAAATGGCAGTAAGCTACT 57.174 40.909 0.00 0.00 44.79 2.57
2188 2677 4.201724 CGTTCAGAAATGGCAGTAAGCTAC 60.202 45.833 0.00 0.00 44.79 3.58
2189 2678 3.932710 CGTTCAGAAATGGCAGTAAGCTA 59.067 43.478 0.00 0.00 44.79 3.32
2191 2680 2.484264 ACGTTCAGAAATGGCAGTAAGC 59.516 45.455 0.00 0.00 44.65 3.09
2192 2681 3.120199 CCACGTTCAGAAATGGCAGTAAG 60.120 47.826 0.00 0.00 0.00 2.34
2199 2700 3.138304 TGAAGACCACGTTCAGAAATGG 58.862 45.455 11.68 11.68 38.26 3.16
2210 2711 3.056821 TGACCAAGATACTGAAGACCACG 60.057 47.826 0.00 0.00 0.00 4.94
2235 2736 1.255342 CGACTGATAATGGAACGTGCG 59.745 52.381 0.00 0.00 0.00 5.34
2244 2750 6.527023 AGACGAGTTGTTTACGACTGATAATG 59.473 38.462 7.49 0.00 40.54 1.90
2245 2751 6.618811 AGACGAGTTGTTTACGACTGATAAT 58.381 36.000 7.49 0.00 40.54 1.28
2250 2756 4.971830 TGTAAGACGAGTTGTTTACGACTG 59.028 41.667 7.49 3.58 40.54 3.51
2271 2777 4.081087 CAGGCAGTGGGTACTTACTTATGT 60.081 45.833 0.00 0.00 34.07 2.29
2301 2809 1.133407 GGACAACTCTCTCTGCGGTAG 59.867 57.143 0.00 0.00 0.00 3.18
2304 2812 1.464734 TAGGACAACTCTCTCTGCGG 58.535 55.000 0.00 0.00 0.00 5.69
2313 2821 1.373570 GCAGGTGCATAGGACAACTC 58.626 55.000 0.00 0.00 41.59 3.01
2314 2822 3.558674 GCAGGTGCATAGGACAACT 57.441 52.632 0.00 0.00 41.59 3.16
2377 2885 3.613910 GCCATTTGGATTTTGTACGCAGT 60.614 43.478 0.00 0.00 41.08 4.40
2381 2889 4.438744 GGAGAGCCATTTGGATTTTGTACG 60.439 45.833 0.00 0.00 37.39 3.67
2393 2901 1.078143 GCCGTCTGGAGAGCCATTT 60.078 57.895 0.00 0.00 44.91 2.32
2474 3008 3.076621 TGTAGTGTAGTGTGGTACTCCG 58.923 50.000 0.00 0.00 40.89 4.63
2500 3034 4.969196 CTGTCGCGCAGGTGTGGT 62.969 66.667 18.78 0.00 41.42 4.16
2607 3152 0.255890 ACGGGGTTCATTCATCAGGG 59.744 55.000 0.00 0.00 0.00 4.45
2609 3154 1.210478 AGGACGGGGTTCATTCATCAG 59.790 52.381 0.00 0.00 0.00 2.90
2610 3155 1.285280 AGGACGGGGTTCATTCATCA 58.715 50.000 0.00 0.00 0.00 3.07
2611 3156 2.017049 CAAGGACGGGGTTCATTCATC 58.983 52.381 0.00 0.00 0.00 2.92
2615 3160 0.328258 CTCCAAGGACGGGGTTCATT 59.672 55.000 0.00 0.00 0.00 2.57
2640 3191 1.592669 CCCTGTGGCTAAGATCGCG 60.593 63.158 0.00 0.00 0.00 5.87
2680 3231 1.955529 GCATGCACCAGTCACGTACG 61.956 60.000 14.21 15.01 0.00 3.67
2684 3244 2.102438 ATCGCATGCACCAGTCACG 61.102 57.895 19.57 0.00 0.00 4.35
2696 3256 2.976350 CCCTGCATCGCATCGCAT 60.976 61.111 0.00 0.00 38.13 4.73
2697 3257 4.159901 TCCCTGCATCGCATCGCA 62.160 61.111 0.00 0.00 38.13 5.10
2698 3258 3.344215 CTCCCTGCATCGCATCGC 61.344 66.667 0.00 0.00 38.13 4.58
2699 3259 2.664185 CCTCCCTGCATCGCATCG 60.664 66.667 0.00 0.00 38.13 3.84
2700 3260 2.281345 CCCTCCCTGCATCGCATC 60.281 66.667 0.00 0.00 38.13 3.91
2741 3306 0.911769 TCATTTCGTCCATGGCTCCT 59.088 50.000 6.96 0.00 0.00 3.69
2742 3307 1.605710 CATCATTTCGTCCATGGCTCC 59.394 52.381 6.96 0.00 0.00 4.70
2743 3308 2.547211 CTCATCATTTCGTCCATGGCTC 59.453 50.000 6.96 1.49 0.00 4.70
2744 3309 2.569059 CTCATCATTTCGTCCATGGCT 58.431 47.619 6.96 0.00 0.00 4.75
2804 3369 0.591236 CTCGCAACCAACCAAACACG 60.591 55.000 0.00 0.00 0.00 4.49
2879 3446 1.048160 AAACAAAGGTGGTGGCCTGG 61.048 55.000 3.32 0.00 39.17 4.45
2895 3462 4.594136 CGTAAAACAACACTGGAGGAAAC 58.406 43.478 0.00 0.00 0.00 2.78
2896 3463 3.065648 GCGTAAAACAACACTGGAGGAAA 59.934 43.478 0.00 0.00 0.00 3.13
2898 3465 2.158871 AGCGTAAAACAACACTGGAGGA 60.159 45.455 0.00 0.00 0.00 3.71
2899 3466 2.032030 CAGCGTAAAACAACACTGGAGG 60.032 50.000 0.00 0.00 0.00 4.30
2900 3467 2.602217 GCAGCGTAAAACAACACTGGAG 60.602 50.000 0.00 0.00 31.59 3.86
2902 3469 1.064803 TGCAGCGTAAAACAACACTGG 59.935 47.619 0.00 0.00 31.59 4.00
2903 3470 2.466870 TGCAGCGTAAAACAACACTG 57.533 45.000 0.00 0.00 33.60 3.66
2904 3471 2.858260 GCATGCAGCGTAAAACAACACT 60.858 45.455 14.21 0.00 0.00 3.55
2905 3472 1.451651 GCATGCAGCGTAAAACAACAC 59.548 47.619 14.21 0.00 0.00 3.32
2928 3495 5.711976 ACTGTAGCATTAGCAACAAAAGGAT 59.288 36.000 0.00 0.00 45.49 3.24
2929 3496 5.048782 CACTGTAGCATTAGCAACAAAAGGA 60.049 40.000 0.00 0.00 45.49 3.36
2930 3497 5.156355 CACTGTAGCATTAGCAACAAAAGG 58.844 41.667 0.00 0.00 45.49 3.11
3039 3639 3.637273 GTGTGGGGCGAGGGTTCT 61.637 66.667 0.00 0.00 0.00 3.01
3040 3640 3.637273 AGTGTGGGGCGAGGGTTC 61.637 66.667 0.00 0.00 0.00 3.62
3073 3673 3.658757 TCCTTGTGCCTTTGTAAATGC 57.341 42.857 0.00 0.00 0.00 3.56
3076 3676 4.582701 CACATCCTTGTGCCTTTGTAAA 57.417 40.909 0.00 0.00 46.20 2.01
3104 3704 2.884639 AGTGCACAAACCCAATGACTAC 59.115 45.455 21.04 0.00 0.00 2.73
3106 3706 1.682854 CAGTGCACAAACCCAATGACT 59.317 47.619 21.04 0.00 0.00 3.41
3114 3715 3.364964 GCATACTACACAGTGCACAAACC 60.365 47.826 21.04 0.00 36.14 3.27
3116 3717 3.471680 TGCATACTACACAGTGCACAAA 58.528 40.909 21.04 0.00 36.14 2.83
3149 3759 2.317679 GATGCAGATCGATCGTACGT 57.682 50.000 19.33 13.59 34.70 3.57
3286 3899 2.497293 CAATGCCATGCCATGCGT 59.503 55.556 0.00 0.00 0.00 5.24
3300 3913 2.434884 CTCACACTCGGCGCCAAT 60.435 61.111 28.98 7.92 0.00 3.16
3308 3921 2.598673 CGATCGATCACTCTCACACTCG 60.599 54.545 24.40 4.06 0.00 4.18
3314 3927 0.305009 GCGTCGATCGATCACTCTCA 59.695 55.000 22.50 0.00 42.86 3.27
3473 4119 8.087750 CGGATAAGATATGCTTCTTCTTCTTCT 58.912 37.037 1.25 0.00 37.20 2.85
3506 4155 8.908903 ACACTTGTCATTTTAAAACCACATCTA 58.091 29.630 1.97 0.00 0.00 1.98
3507 4156 7.781056 ACACTTGTCATTTTAAAACCACATCT 58.219 30.769 1.97 0.00 0.00 2.90
3509 4158 8.037758 TGAACACTTGTCATTTTAAAACCACAT 58.962 29.630 1.97 0.00 0.00 3.21
3511 4160 7.201487 GGTGAACACTTGTCATTTTAAAACCAC 60.201 37.037 1.97 3.67 0.00 4.16
3512 4161 6.814146 GGTGAACACTTGTCATTTTAAAACCA 59.186 34.615 1.97 0.00 0.00 3.67
3513 4162 6.020201 CGGTGAACACTTGTCATTTTAAAACC 60.020 38.462 1.97 0.00 0.00 3.27
3560 4216 1.331756 GTGACACTGGCAGTTCAACAG 59.668 52.381 19.43 8.20 38.19 3.16
3761 4431 2.728690 TTCATCTTGTGTTGCCATGC 57.271 45.000 0.00 0.00 0.00 4.06
3825 4497 9.822185 AAAATTATTCAGAGAACTGCAAAAAGT 57.178 25.926 0.00 0.00 43.17 2.66
3828 4500 7.927629 AGCAAAATTATTCAGAGAACTGCAAAA 59.072 29.630 0.00 0.00 43.17 2.44
3829 4501 7.436118 AGCAAAATTATTCAGAGAACTGCAAA 58.564 30.769 0.00 0.00 43.17 3.68
3830 4502 6.985117 AGCAAAATTATTCAGAGAACTGCAA 58.015 32.000 0.00 0.00 43.17 4.08
3831 4503 6.579666 AGCAAAATTATTCAGAGAACTGCA 57.420 33.333 0.00 0.00 43.17 4.41
3832 4504 7.756558 AGTAGCAAAATTATTCAGAGAACTGC 58.243 34.615 0.00 0.00 43.17 4.40
3833 4505 8.939929 TGAGTAGCAAAATTATTCAGAGAACTG 58.060 33.333 0.00 0.00 44.66 3.16
3834 4506 9.160496 CTGAGTAGCAAAATTATTCAGAGAACT 57.840 33.333 0.17 0.00 37.16 3.01
3855 4537 1.915769 GAGCACCCAGGTCCTGAGT 60.916 63.158 21.23 10.79 38.82 3.41
3985 4681 0.813184 CCAGGCATAACAACAGCAGG 59.187 55.000 0.00 0.00 0.00 4.85
4032 4728 5.978919 TGCAGCAAGAAAATTCAGTTAGTTG 59.021 36.000 0.00 0.00 0.00 3.16
4178 4902 2.934838 ATGACCCCAAGCCCCAAGG 61.935 63.158 0.00 0.00 0.00 3.61
4179 4903 1.683365 CATGACCCCAAGCCCCAAG 60.683 63.158 0.00 0.00 0.00 3.61
4180 4904 1.143329 TACATGACCCCAAGCCCCAA 61.143 55.000 0.00 0.00 0.00 4.12
4181 4905 1.143329 TTACATGACCCCAAGCCCCA 61.143 55.000 0.00 0.00 0.00 4.96
4182 4906 0.040499 TTTACATGACCCCAAGCCCC 59.960 55.000 0.00 0.00 0.00 5.80
4183 4907 2.159179 ATTTACATGACCCCAAGCCC 57.841 50.000 0.00 0.00 0.00 5.19
4184 4908 4.551702 AAAATTTACATGACCCCAAGCC 57.448 40.909 0.00 0.00 0.00 4.35
4215 4941 7.168219 ACAAGCACATCAAAACCTCTAGATTA 58.832 34.615 0.00 0.00 0.00 1.75
4223 4952 3.554934 TCAGACAAGCACATCAAAACCT 58.445 40.909 0.00 0.00 0.00 3.50
4225 4954 5.174398 CACATTCAGACAAGCACATCAAAAC 59.826 40.000 0.00 0.00 0.00 2.43
4237 4966 1.465777 CGCTGCATCACATTCAGACAA 59.534 47.619 0.00 0.00 0.00 3.18
4406 5151 2.892852 TGGAATTTTTCTCCTGGTGCTG 59.107 45.455 0.00 0.00 33.77 4.41
4426 5177 2.226437 GGTGCTGGTGTGACAGTTATTG 59.774 50.000 0.00 0.00 40.59 1.90
4427 5178 2.158682 TGGTGCTGGTGTGACAGTTATT 60.159 45.455 0.00 0.00 40.59 1.40
4441 5195 5.413833 GGTCATTATTCCTATCATGGTGCTG 59.586 44.000 0.00 0.00 0.00 4.41
4576 5340 2.379005 CCTTTAGGTTGATGAAGGGGC 58.621 52.381 0.00 0.00 35.98 5.80
4617 5381 2.872245 TGTAGCTGCTTTTGAGTGTGAC 59.128 45.455 7.79 0.00 0.00 3.67
4681 5454 4.340263 CACATCATCACGATCAGCAAAAG 58.660 43.478 0.00 0.00 29.21 2.27
4687 5461 1.224075 GGGCACATCATCACGATCAG 58.776 55.000 0.00 0.00 29.21 2.90
4790 5586 3.480133 GATGGCCCGGTAGGTGCT 61.480 66.667 0.00 0.00 38.26 4.40
5140 5957 0.183492 TGAAACTGAACCTGCAGGCT 59.817 50.000 33.06 22.25 40.20 4.58
5164 5993 4.957296 AGCAAGAACGGAGAAGAAAAGTA 58.043 39.130 0.00 0.00 0.00 2.24
5185 6014 6.479990 TCTTCAATTCAATAGCACGGTCATAG 59.520 38.462 0.00 0.00 0.00 2.23
5190 6019 7.120579 TGTTAATCTTCAATTCAATAGCACGGT 59.879 33.333 0.00 0.00 0.00 4.83
5192 6021 8.894409 TTGTTAATCTTCAATTCAATAGCACG 57.106 30.769 0.00 0.00 0.00 5.34
5194 6023 8.522003 TGCTTGTTAATCTTCAATTCAATAGCA 58.478 29.630 0.00 0.00 0.00 3.49
5197 6034 8.469200 CCCTGCTTGTTAATCTTCAATTCAATA 58.531 33.333 0.00 0.00 0.00 1.90
5294 6139 2.104451 AGCCTTGATCAGCATCCTGTAG 59.896 50.000 9.38 0.00 40.09 2.74
5644 6534 0.249699 TCACCGACGCAAATGTCAGT 60.250 50.000 0.00 0.00 38.84 3.41
5683 6573 0.482446 TCCTTGGCTGGAACAATGGT 59.518 50.000 0.00 0.00 38.70 3.55
5765 6708 3.446570 GCAGTCCATGGCAGGCAC 61.447 66.667 6.96 0.00 0.00 5.01
6045 7034 8.296211 TGGAAGATGCAATATTCTTGAAATGA 57.704 30.769 5.04 0.00 43.75 2.57
6049 7038 6.461927 GGCATGGAAGATGCAATATTCTTGAA 60.462 38.462 5.04 0.00 43.75 2.69
6127 7125 5.741011 TGATGACTGACTTTATGGGTTACC 58.259 41.667 0.00 0.00 37.24 2.85
6128 7126 6.407202 ACTGATGACTGACTTTATGGGTTAC 58.593 40.000 0.00 0.00 0.00 2.50
6129 7127 6.620877 ACTGATGACTGACTTTATGGGTTA 57.379 37.500 0.00 0.00 0.00 2.85
6445 7453 0.318441 CTCCTGCCACTGACTCGAAA 59.682 55.000 0.00 0.00 0.00 3.46
6475 7519 1.867233 GTGTGCTCGATTGTGAACAGT 59.133 47.619 0.00 0.00 27.93 3.55
6476 7520 1.866601 TGTGTGCTCGATTGTGAACAG 59.133 47.619 0.00 0.00 27.93 3.16
6477 7521 1.866601 CTGTGTGCTCGATTGTGAACA 59.133 47.619 0.00 0.00 0.00 3.18
6592 7637 1.318576 AAAAACGGAGGCTGAAGTGG 58.681 50.000 0.00 0.00 0.00 4.00
6610 7655 3.283751 TCTTGAGCCTTCGTTCCAAAAA 58.716 40.909 0.00 0.00 0.00 1.94
6611 7656 2.925724 TCTTGAGCCTTCGTTCCAAAA 58.074 42.857 0.00 0.00 0.00 2.44
6612 7657 2.631160 TCTTGAGCCTTCGTTCCAAA 57.369 45.000 0.00 0.00 0.00 3.28
6613 7658 2.104111 TCTTCTTGAGCCTTCGTTCCAA 59.896 45.455 0.00 0.00 0.00 3.53
6614 7659 1.691976 TCTTCTTGAGCCTTCGTTCCA 59.308 47.619 0.00 0.00 0.00 3.53
6615 7660 2.342179 CTCTTCTTGAGCCTTCGTTCC 58.658 52.381 0.00 0.00 35.84 3.62
6625 7670 0.322008 AAAGCCGGGCTCTTCTTGAG 60.322 55.000 24.08 0.00 45.33 3.02
6626 7671 0.606401 CAAAGCCGGGCTCTTCTTGA 60.606 55.000 24.08 0.00 38.25 3.02
6627 7672 0.606401 TCAAAGCCGGGCTCTTCTTG 60.606 55.000 24.08 21.74 38.25 3.02
6628 7673 0.110486 TTCAAAGCCGGGCTCTTCTT 59.890 50.000 24.08 10.16 38.25 2.52
6629 7674 0.329596 ATTCAAAGCCGGGCTCTTCT 59.670 50.000 24.08 2.98 38.25 2.85
6630 7675 1.177401 AATTCAAAGCCGGGCTCTTC 58.823 50.000 24.08 0.00 38.25 2.87
6631 7676 2.492088 GTTAATTCAAAGCCGGGCTCTT 59.508 45.455 24.08 15.43 38.25 2.85
6632 7677 2.092323 GTTAATTCAAAGCCGGGCTCT 58.908 47.619 24.08 5.15 38.25 4.09
6633 7678 1.816224 TGTTAATTCAAAGCCGGGCTC 59.184 47.619 24.08 6.82 38.25 4.70
6634 7679 1.917872 TGTTAATTCAAAGCCGGGCT 58.082 45.000 17.69 17.69 42.56 5.19
6635 7680 2.734276 TTGTTAATTCAAAGCCGGGC 57.266 45.000 12.11 12.11 0.00 6.13
6642 7687 7.757624 GCCGGTTGATATCTTTGTTAATTCAAA 59.242 33.333 1.90 0.00 36.18 2.69
6643 7688 7.254852 GCCGGTTGATATCTTTGTTAATTCAA 58.745 34.615 1.90 0.00 0.00 2.69
6644 7689 6.183360 GGCCGGTTGATATCTTTGTTAATTCA 60.183 38.462 1.90 0.00 0.00 2.57
6645 7690 6.183360 TGGCCGGTTGATATCTTTGTTAATTC 60.183 38.462 1.90 0.00 0.00 2.17
6646 7691 5.654650 TGGCCGGTTGATATCTTTGTTAATT 59.345 36.000 1.90 0.00 0.00 1.40
6647 7692 5.197451 TGGCCGGTTGATATCTTTGTTAAT 58.803 37.500 1.90 0.00 0.00 1.40
6648 7693 4.590918 TGGCCGGTTGATATCTTTGTTAA 58.409 39.130 1.90 0.00 0.00 2.01
6649 7694 4.196193 CTGGCCGGTTGATATCTTTGTTA 58.804 43.478 2.29 0.00 0.00 2.41
6650 7695 3.016736 CTGGCCGGTTGATATCTTTGTT 58.983 45.455 2.29 0.00 0.00 2.83
6651 7696 2.643551 CTGGCCGGTTGATATCTTTGT 58.356 47.619 2.29 0.00 0.00 2.83
6652 7697 1.949525 CCTGGCCGGTTGATATCTTTG 59.050 52.381 11.58 0.00 0.00 2.77
6653 7698 1.843851 TCCTGGCCGGTTGATATCTTT 59.156 47.619 11.58 0.00 0.00 2.52
6654 7699 1.507140 TCCTGGCCGGTTGATATCTT 58.493 50.000 11.58 0.00 0.00 2.40
6655 7700 1.734655 ATCCTGGCCGGTTGATATCT 58.265 50.000 11.58 0.00 0.00 1.98
6656 7701 2.568623 AATCCTGGCCGGTTGATATC 57.431 50.000 11.58 0.00 0.00 1.63
6657 7702 2.708861 TGTAATCCTGGCCGGTTGATAT 59.291 45.455 11.58 1.65 0.00 1.63
6658 7703 2.120312 TGTAATCCTGGCCGGTTGATA 58.880 47.619 11.58 0.00 0.00 2.15
6659 7704 0.916086 TGTAATCCTGGCCGGTTGAT 59.084 50.000 11.58 4.00 0.00 2.57
6660 7705 0.693622 TTGTAATCCTGGCCGGTTGA 59.306 50.000 11.58 1.27 0.00 3.18
6661 7706 1.094785 CTTGTAATCCTGGCCGGTTG 58.905 55.000 11.58 0.00 0.00 3.77
6662 7707 0.034477 CCTTGTAATCCTGGCCGGTT 60.034 55.000 11.58 1.23 0.00 4.44
6663 7708 0.912487 TCCTTGTAATCCTGGCCGGT 60.912 55.000 11.58 0.00 0.00 5.28
6664 7709 0.463833 GTCCTTGTAATCCTGGCCGG 60.464 60.000 3.88 3.88 0.00 6.13
6665 7710 0.251916 TGTCCTTGTAATCCTGGCCG 59.748 55.000 0.00 0.00 0.00 6.13
6666 7711 2.092323 GTTGTCCTTGTAATCCTGGCC 58.908 52.381 0.00 0.00 0.00 5.36
6667 7712 2.092323 GGTTGTCCTTGTAATCCTGGC 58.908 52.381 0.00 0.00 0.00 4.85
6668 7713 2.356135 CGGTTGTCCTTGTAATCCTGG 58.644 52.381 0.00 0.00 0.00 4.45
6669 7714 1.737793 GCGGTTGTCCTTGTAATCCTG 59.262 52.381 0.00 0.00 0.00 3.86
6670 7715 1.628846 AGCGGTTGTCCTTGTAATCCT 59.371 47.619 0.00 0.00 0.00 3.24
6671 7716 2.109425 AGCGGTTGTCCTTGTAATCC 57.891 50.000 0.00 0.00 0.00 3.01
6672 7717 3.998341 TGTAAGCGGTTGTCCTTGTAATC 59.002 43.478 10.73 0.00 0.00 1.75
6673 7718 4.010667 TGTAAGCGGTTGTCCTTGTAAT 57.989 40.909 10.73 0.00 0.00 1.89
6674 7719 3.472283 TGTAAGCGGTTGTCCTTGTAA 57.528 42.857 10.73 0.00 0.00 2.41
6675 7720 3.132925 GTTGTAAGCGGTTGTCCTTGTA 58.867 45.455 10.73 0.00 0.00 2.41
6676 7721 1.944709 GTTGTAAGCGGTTGTCCTTGT 59.055 47.619 10.73 0.00 0.00 3.16
6677 7722 1.070175 CGTTGTAAGCGGTTGTCCTTG 60.070 52.381 10.73 0.00 0.00 3.61
6678 7723 1.223187 CGTTGTAAGCGGTTGTCCTT 58.777 50.000 10.73 0.00 0.00 3.36
6679 7724 1.226030 GCGTTGTAAGCGGTTGTCCT 61.226 55.000 10.73 0.00 0.00 3.85
6680 7725 1.205820 GCGTTGTAAGCGGTTGTCC 59.794 57.895 10.73 0.00 0.00 4.02
6681 7726 0.305313 TTGCGTTGTAAGCGGTTGTC 59.695 50.000 10.73 3.83 37.44 3.18
6682 7727 0.733729 TTTGCGTTGTAAGCGGTTGT 59.266 45.000 10.73 0.00 37.44 3.32
6683 7728 1.003331 TCTTTGCGTTGTAAGCGGTTG 60.003 47.619 10.73 0.00 37.44 3.77
6684 7729 1.301423 TCTTTGCGTTGTAAGCGGTT 58.699 45.000 4.76 4.76 37.44 4.44
6685 7730 1.301423 TTCTTTGCGTTGTAAGCGGT 58.699 45.000 0.00 0.00 37.44 5.68
6686 7731 2.392933 TTTCTTTGCGTTGTAAGCGG 57.607 45.000 0.00 0.00 37.44 5.52
6687 7732 2.719046 CCTTTTCTTTGCGTTGTAAGCG 59.281 45.455 0.00 0.00 37.44 4.68
6688 7733 3.959943 TCCTTTTCTTTGCGTTGTAAGC 58.040 40.909 0.00 0.00 0.00 3.09
6689 7734 5.231357 GGTTTCCTTTTCTTTGCGTTGTAAG 59.769 40.000 0.00 0.00 0.00 2.34
6690 7735 5.103687 GGTTTCCTTTTCTTTGCGTTGTAA 58.896 37.500 0.00 0.00 0.00 2.41
6691 7736 4.674475 GGTTTCCTTTTCTTTGCGTTGTA 58.326 39.130 0.00 0.00 0.00 2.41
6692 7737 3.517602 GGTTTCCTTTTCTTTGCGTTGT 58.482 40.909 0.00 0.00 0.00 3.32
6693 7738 2.533942 CGGTTTCCTTTTCTTTGCGTTG 59.466 45.455 0.00 0.00 0.00 4.10
6694 7739 2.424246 TCGGTTTCCTTTTCTTTGCGTT 59.576 40.909 0.00 0.00 0.00 4.84
6695 7740 2.018515 TCGGTTTCCTTTTCTTTGCGT 58.981 42.857 0.00 0.00 0.00 5.24
6696 7741 2.650608 CTCGGTTTCCTTTTCTTTGCG 58.349 47.619 0.00 0.00 0.00 4.85
6697 7742 2.394708 GCTCGGTTTCCTTTTCTTTGC 58.605 47.619 0.00 0.00 0.00 3.68
6698 7743 2.289547 TCGCTCGGTTTCCTTTTCTTTG 59.710 45.455 0.00 0.00 0.00 2.77
6699 7744 2.289820 GTCGCTCGGTTTCCTTTTCTTT 59.710 45.455 0.00 0.00 0.00 2.52
6700 7745 1.871676 GTCGCTCGGTTTCCTTTTCTT 59.128 47.619 0.00 0.00 0.00 2.52
6701 7746 1.509703 GTCGCTCGGTTTCCTTTTCT 58.490 50.000 0.00 0.00 0.00 2.52
6702 7747 0.163146 CGTCGCTCGGTTTCCTTTTC 59.837 55.000 0.00 0.00 35.71 2.29
6703 7748 2.231820 CGTCGCTCGGTTTCCTTTT 58.768 52.632 0.00 0.00 35.71 2.27
6704 7749 3.946907 CGTCGCTCGGTTTCCTTT 58.053 55.556 0.00 0.00 35.71 3.11
6713 7758 0.099968 TTCCTTGTATCCGTCGCTCG 59.900 55.000 0.00 0.00 39.52 5.03
6714 7759 1.134560 AGTTCCTTGTATCCGTCGCTC 59.865 52.381 0.00 0.00 0.00 5.03
6715 7760 1.134560 GAGTTCCTTGTATCCGTCGCT 59.865 52.381 0.00 0.00 0.00 4.93
6716 7761 1.135199 TGAGTTCCTTGTATCCGTCGC 60.135 52.381 0.00 0.00 0.00 5.19
6717 7762 2.933495 TGAGTTCCTTGTATCCGTCG 57.067 50.000 0.00 0.00 0.00 5.12
6718 7763 2.930682 GCTTGAGTTCCTTGTATCCGTC 59.069 50.000 0.00 0.00 0.00 4.79
6719 7764 2.301870 TGCTTGAGTTCCTTGTATCCGT 59.698 45.455 0.00 0.00 0.00 4.69
6720 7765 2.972625 TGCTTGAGTTCCTTGTATCCG 58.027 47.619 0.00 0.00 0.00 4.18
6721 7766 5.009610 TGTTTTGCTTGAGTTCCTTGTATCC 59.990 40.000 0.00 0.00 0.00 2.59
6722 7767 6.072112 TGTTTTGCTTGAGTTCCTTGTATC 57.928 37.500 0.00 0.00 0.00 2.24
6723 7768 6.096846 AGTTGTTTTGCTTGAGTTCCTTGTAT 59.903 34.615 0.00 0.00 0.00 2.29
6724 7769 5.417580 AGTTGTTTTGCTTGAGTTCCTTGTA 59.582 36.000 0.00 0.00 0.00 2.41
6725 7770 4.220602 AGTTGTTTTGCTTGAGTTCCTTGT 59.779 37.500 0.00 0.00 0.00 3.16
6726 7771 4.747810 AGTTGTTTTGCTTGAGTTCCTTG 58.252 39.130 0.00 0.00 0.00 3.61
6727 7772 4.462483 TGAGTTGTTTTGCTTGAGTTCCTT 59.538 37.500 0.00 0.00 0.00 3.36
6728 7773 4.016444 TGAGTTGTTTTGCTTGAGTTCCT 58.984 39.130 0.00 0.00 0.00 3.36
6729 7774 4.370364 TGAGTTGTTTTGCTTGAGTTCC 57.630 40.909 0.00 0.00 0.00 3.62
6730 7775 4.800471 CCTTGAGTTGTTTTGCTTGAGTTC 59.200 41.667 0.00 0.00 0.00 3.01
6731 7776 4.747810 CCTTGAGTTGTTTTGCTTGAGTT 58.252 39.130 0.00 0.00 0.00 3.01
6732 7777 3.429410 GCCTTGAGTTGTTTTGCTTGAGT 60.429 43.478 0.00 0.00 0.00 3.41
6733 7778 3.118542 GCCTTGAGTTGTTTTGCTTGAG 58.881 45.455 0.00 0.00 0.00 3.02
6734 7779 2.495270 TGCCTTGAGTTGTTTTGCTTGA 59.505 40.909 0.00 0.00 0.00 3.02
6735 7780 2.861935 CTGCCTTGAGTTGTTTTGCTTG 59.138 45.455 0.00 0.00 0.00 4.01
6736 7781 2.739609 GCTGCCTTGAGTTGTTTTGCTT 60.740 45.455 0.00 0.00 0.00 3.91
6737 7782 1.202452 GCTGCCTTGAGTTGTTTTGCT 60.202 47.619 0.00 0.00 0.00 3.91
6738 7783 1.211743 GCTGCCTTGAGTTGTTTTGC 58.788 50.000 0.00 0.00 0.00 3.68
6739 7784 2.582728 TGCTGCCTTGAGTTGTTTTG 57.417 45.000 0.00 0.00 0.00 2.44


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.