AutoCloner

Multiple sequence alignment - TraesCS6D01G338500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS6D01G338500	chr6D	100.000	2530	0	0	1	2530	438529827	438527298	0.000000e+00	4673
1	TraesCS6D01G338500	chr6D	93.597	1468	69	10	1	1461	438526498	438527947	0.000000e+00	2167
2	TraesCS6D01G338500	chr6D	93.692	650	36	1	1881	2530	438528367	438529011	0.000000e+00	968
3	TraesCS6D01G338500	chr3B	89.233	1709	133	20	188	1870	229161451	229163134	0.000000e+00	2089
4	TraesCS6D01G338500	chr3B	90.256	626	55	3	1881	2500	229162724	229162099	0.000000e+00	813
5	TraesCS6D01G338500	chr3B	85.787	197	11	7	2	198	229161185	229161364	2.570000e-45	193
6	TraesCS6D01G338500	chr3D	88.255	1524	149	21	194	1697	157754753	157756266	0.000000e+00	1796
7	TraesCS6D01G338500	chr3D	87.107	636	71	9	1881	2508	157756031	157755399	0.000000e+00	710
8	TraesCS6D01G338500	chr3D	86.364	198	10	7	1	198	157754479	157754659	1.530000e-47	200
9	TraesCS6D01G338500	chr3A	89.496	1171	94	13	719	1870	170384412	170383252	0.000000e+00	1454
10	TraesCS6D01G338500	chr3A	88.994	636	65	3	1881	2511	170383651	170384286	0.000000e+00	782
11	TraesCS6D01G338500	chr3A	90.467	514	37	8	210	720	170384998	170384494	0.000000e+00	667
12	TraesCS6D01G338500	chr3A	88.163	245	20	1	1626	1870	170305248	170305013	1.480000e-72	283
13	TraesCS6D01G338500	chr3A	88.163	245	20	1	1626	1870	170356393	170356158	1.480000e-72	283
14	TraesCS6D01G338500	chr3A	85.632	174	8	7	25	198	170385263	170385107	1.560000e-37	167
15	TraesCS6D01G338500	chrUn	89.622	925	76	12	719	1624	336469380	336470303	0.000000e+00	1158
16	TraesCS6D01G338500	chrUn	89.308	636	63	3	1881	2511	336470141	336469506	0.000000e+00	793
17	TraesCS6D01G338500	chrUn	90.661	514	36	8	210	720	336468794	336469298	0.000000e+00	673
18	TraesCS6D01G338500	chrUn	90.272	514	38	8	210	720	397151469	397151973	0.000000e+00	662
19	TraesCS6D01G338500	chrUn	89.882	425	33	5	719	1133	397152055	397152479	2.860000e-149	538
20	TraesCS6D01G338500	chrUn	91.304	299	25	1	2214	2511	397152479	397152181	8.430000e-110	407
21	TraesCS6D01G338500	chrUn	90.419	167	12	4	210	374	392970372	392970536	1.520000e-52	217
22	TraesCS6D01G338500	chrUn	85.632	174	8	7	25	198	392970107	392970263	1.560000e-37	167
23	TraesCS6D01G338500	chrUn	85.632	174	8	7	25	198	397151204	397151360	1.560000e-37	167
24	TraesCS6D01G338500	chrUn	85.057	174	9	7	25	198	336468529	336468685	7.240000e-36	161

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS6D01G338500	chr6D	438527298	438529827	2529	True	4673.000000	4673	100.000000	1	2530	1	chr6D.!!$R1	2529
1	TraesCS6D01G338500	chr6D	438526498	438529011	2513	False	1567.500000	2167	93.644500	1	2530	2	chr6D.!!$F1	2529
2	TraesCS6D01G338500	chr3B	229161185	229163134	1949	False	1141.000000	2089	87.510000	2	1870	2	chr3B.!!$F1	1868
3	TraesCS6D01G338500	chr3B	229162099	229162724	625	True	813.000000	813	90.256000	1881	2500	1	chr3B.!!$R1	619
4	TraesCS6D01G338500	chr3D	157754479	157756266	1787	False	998.000000	1796	87.309500	1	1697	2	chr3D.!!$F1	1696
5	TraesCS6D01G338500	chr3D	157755399	157756031	632	True	710.000000	710	87.107000	1881	2508	1	chr3D.!!$R1	627
6	TraesCS6D01G338500	chr3A	170383651	170384286	635	False	782.000000	782	88.994000	1881	2511	1	chr3A.!!$F1	630
7	TraesCS6D01G338500	chr3A	170383252	170385263	2011	True	762.666667	1454	88.531667	25	1870	3	chr3A.!!$R3	1845
8	TraesCS6D01G338500	chrUn	336469506	336470141	635	True	793.000000	793	89.308000	1881	2511	1	chrUn.!!$R1	630
9	TraesCS6D01G338500	chrUn	336468529	336470303	1774	False	664.000000	1158	88.446667	25	1624	3	chrUn.!!$F1	1599
10	TraesCS6D01G338500	chrUn	397151204	397152479	1275	False	455.666667	662	88.595333	25	1133	3	chrUn.!!$F3	1108

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
436	535	1.206878	TGTGGTGATAGGATGCTGCT	58.793	50.0	0.0	0.0	0.0	4.24	F
1113	1323	1.507140	TCTTCTCAGTTGGTGGTGGT	58.493	50.0	0.0	0.0	0.0	4.16	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1243	1456	0.401738	ATGTGGACAGGGAACAGTGG	59.598	55.0	0.0	0.0	0.0	4.00	R
2012	2425	0.533308	CGGGTGTTGGTCCTTCGAAA	60.533	55.0	0.0	0.0	0.0	3.46	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	3.715618	TGCGTTAACTATGCAACTTCG	57.284	42.857	3.71	0.00	45.55	3.79
59	60	4.613437	ACATACATTGCCCAAAGGAATCT	58.387	39.130	0.00	0.00	33.47	2.40
62	63	3.716431	ACATTGCCCAAAGGAATCTGAT	58.284	40.909	0.00	0.00	33.47	2.90
200	298	9.528489	ACTTAGTTGTGAATATGGTAAAATGGT	57.472	29.630	0.00	0.00	0.00	3.55
203	301	7.996385	AGTTGTGAATATGGTAAAATGGTAGC	58.004	34.615	0.00	0.00	0.00	3.58
206	304	9.634021	TTGTGAATATGGTAAAATGGTAGCATA	57.366	29.630	8.04	9.17	44.35	3.14
249	347	7.675962	TTGTACTAAATATGCGTTTTGACCT	57.324	32.000	0.00	0.00	0.00	3.85
395	494	4.350346	CTCGCTGTGTTCTCTAATCTCTG	58.650	47.826	0.00	0.00	0.00	3.35
431	530	7.821359	CCTGATAACTAATGTGGTGATAGGATG	59.179	40.741	0.00	0.00	0.00	3.51
432	531	7.161404	TGATAACTAATGTGGTGATAGGATGC	58.839	38.462	0.00	0.00	0.00	3.91
433	532	5.636903	AACTAATGTGGTGATAGGATGCT	57.363	39.130	0.00	0.00	0.00	3.79
434	533	4.965814	ACTAATGTGGTGATAGGATGCTG	58.034	43.478	0.00	0.00	0.00	4.41
435	534	2.267174	ATGTGGTGATAGGATGCTGC	57.733	50.000	0.00	0.00	0.00	5.25
436	535	1.206878	TGTGGTGATAGGATGCTGCT	58.793	50.000	0.00	0.00	0.00	4.24
437	536	1.561076	TGTGGTGATAGGATGCTGCTT	59.439	47.619	0.00	0.00	0.00	3.91
438	537	2.216898	GTGGTGATAGGATGCTGCTTC	58.783	52.381	6.97	6.97	0.00	3.86
439	538	1.839354	TGGTGATAGGATGCTGCTTCA	59.161	47.619	16.12	0.00	0.00	3.02
440	539	2.440627	TGGTGATAGGATGCTGCTTCAT	59.559	45.455	16.12	12.10	0.00	2.57
441	540	3.647590	TGGTGATAGGATGCTGCTTCATA	59.352	43.478	16.12	13.79	0.00	2.15
442	541	4.287845	TGGTGATAGGATGCTGCTTCATAT	59.712	41.667	18.62	18.62	0.00	1.78
443	542	4.634883	GGTGATAGGATGCTGCTTCATATG	59.365	45.833	22.08	0.00	0.00	1.78
444	543	5.243981	GTGATAGGATGCTGCTTCATATGT	58.756	41.667	22.08	5.49	0.00	2.29
445	544	5.350914	GTGATAGGATGCTGCTTCATATGTC	59.649	44.000	22.08	13.05	0.00	3.06
507	621	8.198807	AGTCATATGGATGATCACATACTTGA	57.801	34.615	0.00	1.96	43.95	3.02
545	660	8.595362	TCTCTAGAATAGACCTCATGAACAAA	57.405	34.615	0.00	0.00	44.15	2.83
568	683	8.413229	CAAATAGAACTTCCACTTCCTTTGAAA	58.587	33.333	0.00	0.00	30.01	2.69
583	698	6.825610	TCCTTTGAAAGCCAAAATACACAAT	58.174	32.000	0.00	0.00	43.50	2.71
688	803	7.870509	AAATCTGAATTGATTAGCTGCTGTA	57.129	32.000	13.43	0.04	35.82	2.74
694	809	9.362539	CTGAATTGATTAGCTGCTGTAAAATTT	57.637	29.630	13.43	0.00	0.00	1.82
762	961	5.356190	TCCATGAGAAATCAAATCAGAGCAC	59.644	40.000	0.00	0.00	0.00	4.40
834	1033	5.895636	AAAACGATATCACATCTGCCAAA	57.104	34.783	3.12	0.00	0.00	3.28
843	1051	6.610075	ATCACATCTGCCAAATACCTTTTT	57.390	33.333	0.00	0.00	0.00	1.94
844	1052	5.782047	TCACATCTGCCAAATACCTTTTTG	58.218	37.500	0.00	0.00	36.55	2.44
893	1101	6.490492	TCTTGGGAAGGAAAAGGTATTTAGG	58.510	40.000	0.00	0.00	0.00	2.69
936	1146	3.827008	AGTGCTCTGAAGTCTGAACAA	57.173	42.857	0.00	0.00	0.00	2.83
963	1173	3.395941	ACCTCTTGTCAACTCCAGGAAAT	59.604	43.478	0.00	0.00	0.00	2.17
968	1178	4.640771	TGTCAACTCCAGGAAATTAGCT	57.359	40.909	0.00	0.00	0.00	3.32
1068	1278	1.743252	GGAGTCAAAGCCCTGCTCG	60.743	63.158	0.00	0.00	38.25	5.03
1113	1323	1.507140	TCTTCTCAGTTGGTGGTGGT	58.493	50.000	0.00	0.00	0.00	4.16
1206	1416	9.842775	TTTCAATATCTGCTCTATTCTTCATGT	57.157	29.630	0.00	0.00	0.00	3.21
1228	1441	9.541724	CATGTGTATATTTGTTAATATCACCGC	57.458	33.333	0.00	0.00	37.89	5.68
1246	1459	1.199097	CGCCAAGGTTGTGAATACCAC	59.801	52.381	0.00	0.00	45.88	4.16
1345	1566	6.255453	CCTTCGAAGCAATTCAAAACTGAAAA	59.745	34.615	19.99	0.00	0.00	2.29
1403	1625	3.055312	GGATAACGGTTCCAAGGAGTCTT	60.055	47.826	0.00	0.00	33.21	3.01
1502	1848	1.470098	CCGCAGAACATAGCAGCTTTT	59.530	47.619	0.00	0.00	0.00	2.27
1564	1934	1.845664	TGCCAGGTCTACCAAGCCA	60.846	57.895	1.26	0.00	38.89	4.75
1647	2017	1.355720	CCTCCCCTGAAATTGGACACT	59.644	52.381	0.00	0.00	0.00	3.55
1686	2097	1.271102	TGGCCGCTGTTATTTTGTTCC	59.729	47.619	0.00	0.00	0.00	3.62
1697	2108	7.520937	GCTGTTATTTTGTTCCGAAACTAGGAA	60.521	37.037	0.00	0.00	44.72	3.36
1757	2169	1.314730	ATTTGGTTTCCGTTGCTCGT	58.685	45.000	1.89	0.00	37.94	4.18
1813	2225	9.630098	CATTTTGAATGCTGATAAGTTACACTT	57.370	29.630	0.00	0.00	41.97	3.16
1855	2267	6.548251	TCCGTGAGATACATAAACATACTCCA	59.452	38.462	0.00	0.00	0.00	3.86
1870	2282	2.711542	ACTCCAATTTGACCCGATGAC	58.288	47.619	0.00	0.00	0.00	3.06
1871	2283	2.017049	CTCCAATTTGACCCGATGACC	58.983	52.381	0.00	0.00	0.00	4.02
1872	2284	1.633432	TCCAATTTGACCCGATGACCT	59.367	47.619	0.00	0.00	0.00	3.85
1873	2285	1.745087	CCAATTTGACCCGATGACCTG	59.255	52.381	0.00	0.00	0.00	4.00
1874	2286	2.617788	CCAATTTGACCCGATGACCTGA	60.618	50.000	0.00	0.00	0.00	3.86
1875	2287	3.282021	CAATTTGACCCGATGACCTGAT	58.718	45.455	0.00	0.00	0.00	2.90
1876	2288	2.401583	TTTGACCCGATGACCTGATG	57.598	50.000	0.00	0.00	0.00	3.07
1877	2289	0.541392	TTGACCCGATGACCTGATGG	59.459	55.000	0.00	0.00	39.83	3.51
1878	2290	1.227674	GACCCGATGACCTGATGGC	60.228	63.158	0.00	0.00	36.63	4.40
1879	2291	1.690219	GACCCGATGACCTGATGGCT	61.690	60.000	0.00	0.00	36.63	4.75
1930	2342	1.043116	CCTACCGCTCCACAGGATGA	61.043	60.000	0.00	0.00	39.69	2.92
1948	2360	1.343069	GACCACCTGAGACTCCTTGT	58.657	55.000	0.00	0.00	0.00	3.16
1953	2365	2.632996	CACCTGAGACTCCTTGTAACCA	59.367	50.000	0.00	0.00	0.00	3.67
1987	2400	6.352737	GGACCTAGATAATGAAACAGGGTCAA	60.353	42.308	0.00	0.00	41.46	3.18
2156	2575	8.607441	AAATATACGCATGAAGAATAGAGCAA	57.393	30.769	0.00	0.00	0.00	3.91
2200	2619	0.623723	TGGCCAGGAAGGATTACCAC	59.376	55.000	0.00	0.00	41.22	4.16
2201	2620	0.919710	GGCCAGGAAGGATTACCACT	59.080	55.000	0.00	0.00	41.22	4.00
2256	2675	3.261897	CACCACCAACTGAGAAGATACCT	59.738	47.826	0.00	0.00	0.00	3.08
2276	2695	2.046892	AGTGTGGCGCATCAGTCC	60.047	61.111	10.83	0.00	0.00	3.85
2378	2797	7.993183	CCTTTTATTTGGTGATAGAAGGCTCTA	59.007	37.037	0.00	0.00	37.18	2.43
2380	2799	4.755266	TTTGGTGATAGAAGGCTCTACC	57.245	45.455	0.00	0.00	36.98	3.18
2411	2830	4.000988	GGAGTTGACAAAAGATTCGGCTA	58.999	43.478	0.00	0.00	0.00	3.93
2474	2895	5.510430	AGCTAAATACCTTTTCCTTCCCAG	58.490	41.667	0.00	0.00	0.00	4.45
2502	2923	7.910441	ATTCCAAGAATACAATGCAAAAAGG	57.090	32.000	0.00	0.00	0.00	3.11
2511	2932	8.601845	AATACAATGCAAAAAGGAAAAGGTAC	57.398	30.769	0.00	0.00	0.00	3.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
35	36	4.799564	TTCCTTTGGGCAATGTATGTTC	57.200	40.909	0.00	0.00	0.00	3.18
59	60	5.066893	GTGGTAGTGGTACTTCACGATATCA	59.933	44.000	3.12	0.00	42.10	2.15
62	63	4.592942	AGTGGTAGTGGTACTTCACGATA	58.407	43.478	0.00	0.00	42.10	2.92
197	295	5.911378	TGCAAATCAAACATATGCTACCA	57.089	34.783	1.58	0.00	37.86	3.25
249	347	7.720515	TGAGATGTATGATGCATAATTTGTCCA	59.279	33.333	0.66	0.00	0.00	4.02
322	421	6.140303	AGAATACCGTGATAGCGAAACTTA	57.860	37.500	0.00	0.00	0.00	2.24
325	424	5.713822	AAAGAATACCGTGATAGCGAAAC	57.286	39.130	0.00	0.00	0.00	2.78
351	450	3.135994	GCGAACAGGTTAAACCAGAAGA	58.864	45.455	0.00	0.00	41.95	2.87
358	457	0.165295	GCGAGGCGAACAGGTTAAAC	59.835	55.000	0.00	0.00	0.00	2.01
395	494	1.501582	AGTTATCAGGGAGGACCAGC	58.498	55.000	0.00	0.00	43.89	4.85
431	530	1.293924	ACAGCGACATATGAAGCAGC	58.706	50.000	22.06	13.86	0.00	5.25
432	531	3.620374	AGAAACAGCGACATATGAAGCAG	59.380	43.478	22.06	18.13	0.00	4.24
433	532	3.599343	AGAAACAGCGACATATGAAGCA	58.401	40.909	22.06	0.00	0.00	3.91
434	533	3.868077	AGAGAAACAGCGACATATGAAGC	59.132	43.478	10.38	13.70	0.00	3.86
435	534	5.578336	TGAAGAGAAACAGCGACATATGAAG	59.422	40.000	10.38	3.79	0.00	3.02
436	535	5.478407	TGAAGAGAAACAGCGACATATGAA	58.522	37.500	10.38	0.00	0.00	2.57
437	536	5.072040	TGAAGAGAAACAGCGACATATGA	57.928	39.130	10.38	0.00	0.00	2.15
438	537	5.784750	TTGAAGAGAAACAGCGACATATG	57.215	39.130	0.00	0.00	0.00	1.78
439	538	6.801539	TTTTGAAGAGAAACAGCGACATAT	57.198	33.333	0.00	0.00	0.00	1.78
440	539	6.426633	TGATTTTGAAGAGAAACAGCGACATA	59.573	34.615	0.00	0.00	0.00	2.29
441	540	5.239306	TGATTTTGAAGAGAAACAGCGACAT	59.761	36.000	0.00	0.00	0.00	3.06
442	541	4.574421	TGATTTTGAAGAGAAACAGCGACA	59.426	37.500	0.00	0.00	0.00	4.35
443	542	4.906437	GTGATTTTGAAGAGAAACAGCGAC	59.094	41.667	0.00	0.00	0.00	5.19
444	543	4.816385	AGTGATTTTGAAGAGAAACAGCGA	59.184	37.500	0.00	0.00	0.00	4.93
445	544	5.100751	AGTGATTTTGAAGAGAAACAGCG	57.899	39.130	0.00	0.00	0.00	5.18
545	660	6.207614	GCTTTCAAAGGAAGTGGAAGTTCTAT	59.792	38.462	2.25	0.00	45.58	1.98
568	683	6.717540	TGTTACCACTATTGTGTATTTTGGCT	59.282	34.615	6.55	0.00	42.34	4.75
583	698	6.993308	TGAGCTAAAATTGTGTGTTACCACTA	59.007	34.615	0.00	0.00	42.34	2.74
843	1051	8.674263	AATTCCAAGAATACAATGCAAAAACA	57.326	26.923	0.00	0.00	0.00	2.83
844	1052	9.597999	GAAATTCCAAGAATACAATGCAAAAAC	57.402	29.630	0.00	0.00	0.00	2.43
893	1101	8.915654	CACTTTGCTTCCTGAAATTATTTGTAC	58.084	33.333	0.00	0.00	0.00	2.90
936	1146	2.771943	TGGAGTTGACAAGAGGTTCAGT	59.228	45.455	0.00	0.00	0.00	3.41
963	1173	3.374764	TGGTGATAGAAGGCTCAGCTAA	58.625	45.455	0.00	0.00	39.87	3.09
968	1178	6.603201	CCTTTTATTTGGTGATAGAAGGCTCA	59.397	38.462	0.00	0.00	37.18	4.26
1113	1323	1.682854	CAAAGCACCCAGAAAGCAAGA	59.317	47.619	0.00	0.00	0.00	3.02
1206	1416	8.678593	TTGGCGGTGATATTAACAAATATACA	57.321	30.769	0.00	0.00	0.00	2.29
1243	1456	0.401738	ATGTGGACAGGGAACAGTGG	59.598	55.000	0.00	0.00	0.00	4.00
1246	1459	5.359194	ACTAATATGTGGACAGGGAACAG	57.641	43.478	0.00	0.00	0.00	3.16
1345	1566	6.610075	AATGAAACAGGGTCAGCAAAATAT	57.390	33.333	0.00	0.00	0.00	1.28
1403	1625	0.982852	CTCCACAGGATGCCCACCTA	60.983	60.000	0.00	0.00	42.53	3.08
1502	1848	2.906389	AGGCTTGTATTCAGGTCTGTCA	59.094	45.455	0.00	0.00	34.39	3.58
1564	1934	3.248602	GCCGAATCAGAAAACTCGCATAT	59.751	43.478	0.00	0.00	0.00	1.78
1576	1946	1.416401	GATACCAAGGGCCGAATCAGA	59.584	52.381	0.00	0.00	0.00	3.27
1647	2017	3.451178	GCCAGAGTGTAGGGAACATAGAA	59.549	47.826	0.00	0.00	41.10	2.10
1686	2097	9.893305	ATTTGATGTAAAAAGTTCCTAGTTTCG	57.107	29.630	0.00	0.00	0.00	3.46
1697	2108	6.930722	CCAGCTCCAAATTTGATGTAAAAAGT	59.069	34.615	19.86	0.00	0.00	2.66
1704	2115	3.763897	GGTACCAGCTCCAAATTTGATGT	59.236	43.478	19.86	9.00	0.00	3.06
1757	2169	5.187772	AGCAATACATCACTACCTCACTTCA	59.812	40.000	0.00	0.00	0.00	3.02
1813	2225	2.224670	ACGGAAGCCATCAGGTTAACAA	60.225	45.455	8.10	0.00	35.97	2.83
1814	2226	1.349688	ACGGAAGCCATCAGGTTAACA	59.650	47.619	8.10	0.00	35.97	2.41
1855	2267	3.282021	CATCAGGTCATCGGGTCAAATT	58.718	45.455	0.00	0.00	0.00	1.82
1878	2290	2.749044	AGCCATGCTTGTGCGGAG	60.749	61.111	0.00	0.00	43.34	4.63
1879	2291	3.057548	CAGCCATGCTTGTGCGGA	61.058	61.111	7.15	0.00	43.34	5.54
1915	2327	2.187946	GGTCATCCTGTGGAGCGG	59.812	66.667	0.00	0.00	34.05	5.52
1930	2342	2.633481	GTTACAAGGAGTCTCAGGTGGT	59.367	50.000	1.47	0.00	0.00	4.16
1948	2360	9.629649	ATTATCTAGGTCCAAGGATAATGGTTA	57.370	33.333	16.36	0.00	38.86	2.85
2012	2425	0.533308	CGGGTGTTGGTCCTTCGAAA	60.533	55.000	0.00	0.00	0.00	3.46
2130	2546	9.705290	TTGCTCTATTCTTCATGCGTATATTTA	57.295	29.630	0.00	0.00	0.00	1.40
2167	2586	3.205056	TCCTGGCCATCCACATATTTTCT	59.795	43.478	5.51	0.00	37.47	2.52
2200	2619	2.256461	GCTTTGCCGCCTTCACAG	59.744	61.111	0.00	0.00	0.00	3.66
2201	2620	2.518112	TGCTTTGCCGCCTTCACA	60.518	55.556	0.00	0.00	0.00	3.58
2256	2675	3.051479	CTGATGCGCCACACTGCA	61.051	61.111	4.18	0.00	46.51	4.41
2276	2695	1.743252	GAGTCAAAGCCCTGCTCCG	60.743	63.158	0.00	0.00	38.25	4.63
2400	2819	5.127845	TCTGAAGTCTGAATAGCCGAATCTT	59.872	40.000	0.00	0.00	0.00	2.40
2411	2830	3.501445	GCAAAGTGCTCTGAAGTCTGAAT	59.499	43.478	0.00	0.00	40.96	2.57
2474	2895	7.903995	TTTGCATTGTATTCTTGGAATTTCC	57.096	32.000	8.59	8.59	36.96	3.13
2502	2923	6.699575	ATCACATATGCCAAGTACCTTTTC	57.300	37.500	1.58	0.00	0.00	2.29

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.