Multiple sequence alignment - TraesCS6D01G337500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G337500 chr6D 100.000 6744 0 0 1 6744 437958273 437951530 0.000000e+00 12454.0
1 TraesCS6D01G337500 chr6D 88.764 89 8 2 4262 4349 437953967 437953880 2.570000e-19 108.0
2 TraesCS6D01G337500 chr6D 88.764 89 8 2 4307 4394 437954012 437953925 2.570000e-19 108.0
3 TraesCS6D01G337500 chr6A 93.637 2043 86 17 2340 4349 586328489 586326458 0.000000e+00 3013.0
4 TraesCS6D01G337500 chr6A 91.042 1641 87 30 1 1608 586330622 586329009 0.000000e+00 2161.0
5 TraesCS6D01G337500 chr6A 91.628 1290 70 19 5483 6744 586325392 586324113 0.000000e+00 1749.0
6 TraesCS6D01G337500 chr6A 90.695 1021 57 13 4307 5306 586326545 586325542 0.000000e+00 1325.0
7 TraesCS6D01G337500 chr6A 90.541 370 22 6 1661 2030 586329010 586328654 1.700000e-130 477.0
8 TraesCS6D01G337500 chr6A 91.892 111 6 3 2220 2327 517665547 517665437 1.170000e-32 152.0
9 TraesCS6D01G337500 chr6A 87.640 89 10 1 4515 4602 145129810 145129722 1.200000e-17 102.0
10 TraesCS6D01G337500 chr6B 89.707 1914 123 30 2479 4349 662897824 662895942 0.000000e+00 2375.0
11 TraesCS6D01G337500 chr6B 91.248 1611 71 18 1 1571 662900433 662898853 0.000000e+00 2130.0
12 TraesCS6D01G337500 chr6B 91.870 861 35 17 5900 6744 662894314 662893473 0.000000e+00 1170.0
13 TraesCS6D01G337500 chr6B 88.440 718 55 11 1 704 663022671 663021968 0.000000e+00 841.0
14 TraesCS6D01G337500 chr6B 88.580 648 27 11 1598 2222 662898851 662898228 0.000000e+00 743.0
15 TraesCS6D01G337500 chr6B 90.110 364 19 5 5303 5659 662894860 662894507 2.220000e-124 457.0
16 TraesCS6D01G337500 chr6B 86.685 368 36 6 1 365 663008850 663008493 4.900000e-106 396.0
17 TraesCS6D01G337500 chr6B 86.413 368 37 5 1 365 662982749 662982392 2.280000e-104 390.0
18 TraesCS6D01G337500 chr6B 91.038 212 12 4 4308 4516 662896025 662895818 5.150000e-71 279.0
19 TraesCS6D01G337500 chr6B 84.646 254 23 6 4603 4843 662895816 662895566 8.740000e-59 239.0
20 TraesCS6D01G337500 chr6B 95.098 102 2 2 2221 2319 219879349 219879450 2.520000e-34 158.0
21 TraesCS6D01G337500 chr6B 93.750 96 5 1 5212 5306 662894989 662894894 7.050000e-30 143.0
22 TraesCS6D01G337500 chr6B 96.491 57 2 0 5758 5814 662894414 662894358 2.000000e-15 95.3
23 TraesCS6D01G337500 chr6B 97.561 41 1 0 5833 5873 662894361 662894321 3.370000e-08 71.3
24 TraesCS6D01G337500 chr2A 95.098 102 2 2 2221 2319 416627570 416627469 2.520000e-34 158.0
25 TraesCS6D01G337500 chr7D 93.458 107 3 3 2213 2315 321247688 321247794 9.060000e-34 156.0
26 TraesCS6D01G337500 chr7D 89.744 117 7 5 2205 2318 136125147 136125033 1.960000e-30 145.0
27 TraesCS6D01G337500 chr7D 92.771 83 5 1 4518 4599 567735195 567735113 1.190000e-22 119.0
28 TraesCS6D01G337500 chr5D 94.231 104 2 3 2220 2319 266749453 266749350 9.060000e-34 156.0
29 TraesCS6D01G337500 chr3B 92.593 108 5 3 2221 2325 738697268 738697161 1.170000e-32 152.0
30 TraesCS6D01G337500 chr1B 91.071 112 6 3 2221 2328 600973518 600973407 1.520000e-31 148.0
31 TraesCS6D01G337500 chr3A 90.435 115 6 5 2220 2329 77405027 77404913 5.450000e-31 147.0
32 TraesCS6D01G337500 chr7B 90.426 94 5 3 4522 4612 622269330 622269422 3.300000e-23 121.0
33 TraesCS6D01G337500 chr7A 91.111 90 6 2 4512 4599 654797037 654796948 3.300000e-23 121.0
34 TraesCS6D01G337500 chr7A 90.217 92 7 2 4522 4612 654796955 654797045 1.190000e-22 119.0
35 TraesCS6D01G337500 chr1D 89.247 93 8 2 4512 4603 228806326 228806417 1.540000e-21 115.0
36 TraesCS6D01G337500 chr1D 89.011 91 7 3 4514 4603 212590 212502 7.150000e-20 110.0
37 TraesCS6D01G337500 chr1A 89.247 93 8 2 4515 4606 287687593 287687684 1.540000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G337500 chr6D 437951530 437958273 6743 True 12454.00 12454 100.0000 1 6744 1 chr6D.!!$R1 6743
1 TraesCS6D01G337500 chr6A 586324113 586330622 6509 True 1745.00 3013 91.5086 1 6744 5 chr6A.!!$R3 6743
2 TraesCS6D01G337500 chr6B 663021968 663022671 703 True 841.00 841 88.4400 1 704 1 chr6B.!!$R3 703
3 TraesCS6D01G337500 chr6B 662893473 662900433 6960 True 770.26 2375 91.5001 1 6744 10 chr6B.!!$R4 6743

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
322 326 0.250727 ACGGTGTCCAAACCCATGAG 60.251 55.0 0.00 0.0 36.84 2.90 F
490 494 1.302383 AACGGCGCGATTTGATCCAA 61.302 50.0 12.10 0.0 0.00 3.53 F
1384 1428 0.615331 TTCCCTGCTCCACTTAGCTG 59.385 55.0 0.00 0.0 43.19 4.24 F
1645 1746 0.038744 GGGCATATGGGAGGTGGATG 59.961 60.0 4.56 0.0 0.00 3.51 F
1646 1747 0.610232 GGCATATGGGAGGTGGATGC 60.610 60.0 4.56 0.0 41.73 3.91 F
3585 4025 0.251386 TTTGGCTTTGGCACCGGATA 60.251 50.0 9.46 0.0 37.98 2.59 F
5444 6212 0.034896 CTTGGGACCGTGCAGTAAGT 59.965 55.0 0.00 0.0 0.00 2.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1373 1417 0.035152 CATGTGGGCAGCTAAGTGGA 60.035 55.000 0.00 0.00 0.00 4.02 R
1626 1727 0.038744 CATCCACCTCCCATATGCCC 59.961 60.000 0.00 0.00 0.00 5.36 R
2218 2379 1.200519 TTTGGGACGGAGGGAGTATG 58.799 55.000 0.00 0.00 0.00 2.39 R
3570 4010 1.440145 GAGCTATCCGGTGCCAAAGC 61.440 60.000 0.00 2.89 40.48 3.51 R
4010 4465 9.815936 GAATAAAAACCATTTGCTCTGAAAATG 57.184 29.630 7.52 7.52 42.24 2.32 R
5488 6256 0.035439 CCGGACCAGGCAATACAAGT 60.035 55.000 0.00 0.00 0.00 3.16 R
6639 7477 1.276421 ACTGAGGATGTTGAGGTTCCG 59.724 52.381 0.00 0.00 34.61 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 2.354072 CGAATCTCTCCGCCTCGC 60.354 66.667 0.00 0.00 0.00 5.03
161 162 2.084610 TGAGCATCAACTTGTCCGAG 57.915 50.000 0.00 0.00 45.97 4.63
195 196 3.972537 CGTCTGATTTGCGCATGC 58.027 55.556 12.75 7.91 43.20 4.06
228 229 4.147322 CATCGTCGCCGCCACAAC 62.147 66.667 0.00 0.00 0.00 3.32
304 308 1.076549 TCCTGTCCCCATTGGCAAC 59.923 57.895 0.00 0.00 0.00 4.17
322 326 0.250727 ACGGTGTCCAAACCCATGAG 60.251 55.000 0.00 0.00 36.84 2.90
429 433 2.036256 CTTTGGCCCTGGACCTGG 59.964 66.667 10.46 10.46 0.00 4.45
490 494 1.302383 AACGGCGCGATTTGATCCAA 61.302 50.000 12.10 0.00 0.00 3.53
561 565 4.101448 CCTCCAAGCTCCCGGTGG 62.101 72.222 0.00 0.09 0.00 4.61
577 590 2.360475 GGCCACCTTGGTCAGCTC 60.360 66.667 0.00 0.09 42.98 4.09
640 664 3.349006 AACAGCACAGCTTCCGCG 61.349 61.111 0.00 0.00 42.32 6.46
656 680 2.106332 CGCTAGGGATTTCGCCGT 59.894 61.111 0.00 0.00 0.00 5.68
924 958 2.742372 CCAAGACAGAACCGGGCG 60.742 66.667 6.32 0.00 0.00 6.13
1365 1409 2.496111 TCCAGTACGAACGCCATTTTT 58.504 42.857 0.00 0.00 0.00 1.94
1382 1426 2.200373 TTTTCCCTGCTCCACTTAGC 57.800 50.000 0.00 0.00 43.08 3.09
1384 1428 0.615331 TTCCCTGCTCCACTTAGCTG 59.385 55.000 0.00 0.00 43.19 4.24
1385 1429 1.451028 CCCTGCTCCACTTAGCTGC 60.451 63.158 0.00 0.00 43.19 5.25
1463 1530 5.635280 GCAAGGGAGCTGAATTTTAGTTTTC 59.365 40.000 0.00 0.00 0.00 2.29
1494 1561 4.879104 TTTGCGGTATTAATGTTACCCG 57.121 40.909 0.00 3.51 36.54 5.28
1499 1566 4.751098 GCGGTATTAATGTTACCCGATTGA 59.249 41.667 13.14 0.00 36.54 2.57
1509 1576 5.067273 TGTTACCCGATTGAAACACTCATT 58.933 37.500 0.00 0.00 32.78 2.57
1512 1584 4.141287 ACCCGATTGAAACACTCATTTCA 58.859 39.130 0.00 0.00 44.80 2.69
1513 1585 4.766891 ACCCGATTGAAACACTCATTTCAT 59.233 37.500 2.04 0.00 45.55 2.57
1514 1586 5.097529 CCCGATTGAAACACTCATTTCATG 58.902 41.667 2.04 0.00 45.55 3.07
1515 1587 5.335897 CCCGATTGAAACACTCATTTCATGT 60.336 40.000 2.04 0.00 45.55 3.21
1516 1588 5.796935 CCGATTGAAACACTCATTTCATGTC 59.203 40.000 2.04 3.83 45.55 3.06
1607 1708 2.095466 GCGTGCCAAATAACTTGCTACA 60.095 45.455 0.00 0.00 33.27 2.74
1608 1709 3.747193 CGTGCCAAATAACTTGCTACAG 58.253 45.455 0.00 0.00 33.27 2.74
1609 1710 3.188460 CGTGCCAAATAACTTGCTACAGT 59.812 43.478 0.00 0.00 33.27 3.55
1610 1711 4.390603 CGTGCCAAATAACTTGCTACAGTA 59.609 41.667 0.00 0.00 33.27 2.74
1611 1712 5.445939 CGTGCCAAATAACTTGCTACAGTAG 60.446 44.000 2.85 2.85 33.27 2.57
1612 1713 5.411669 GTGCCAAATAACTTGCTACAGTAGT 59.588 40.000 9.42 0.00 33.27 2.73
1613 1714 6.001460 TGCCAAATAACTTGCTACAGTAGTT 58.999 36.000 9.42 0.80 36.23 2.24
1614 1715 6.072728 TGCCAAATAACTTGCTACAGTAGTTG 60.073 38.462 9.42 3.43 34.26 3.16
1615 1716 6.072673 GCCAAATAACTTGCTACAGTAGTTGT 60.073 38.462 9.42 3.47 37.47 3.32
1616 1717 7.521585 GCCAAATAACTTGCTACAGTAGTTGTT 60.522 37.037 9.42 12.72 36.10 2.83
1617 1718 8.995220 CCAAATAACTTGCTACAGTAGTTGTTA 58.005 33.333 9.42 14.14 36.10 2.41
1619 1720 9.991906 AAATAACTTGCTACAGTAGTTGTTAGA 57.008 29.630 9.42 0.22 41.29 2.10
1620 1721 9.640963 AATAACTTGCTACAGTAGTTGTTAGAG 57.359 33.333 9.42 0.91 41.29 2.43
1621 1722 6.026947 ACTTGCTACAGTAGTTGTTAGAGG 57.973 41.667 9.42 0.00 41.29 3.69
1622 1723 5.047235 ACTTGCTACAGTAGTTGTTAGAGGG 60.047 44.000 9.42 0.00 41.29 4.30
1623 1724 3.194968 TGCTACAGTAGTTGTTAGAGGGC 59.805 47.826 9.42 0.00 41.29 5.19
1624 1725 3.734293 GCTACAGTAGTTGTTAGAGGGCG 60.734 52.174 9.42 0.00 41.29 6.13
1625 1726 1.067071 ACAGTAGTTGTTAGAGGGCGC 60.067 52.381 0.00 0.00 36.31 6.53
1626 1727 0.172803 AGTAGTTGTTAGAGGGCGCG 59.827 55.000 0.00 0.00 0.00 6.86
1627 1728 0.804933 GTAGTTGTTAGAGGGCGCGG 60.805 60.000 8.83 0.00 0.00 6.46
1628 1729 1.952102 TAGTTGTTAGAGGGCGCGGG 61.952 60.000 8.83 0.00 0.00 6.13
1629 1730 4.770874 TTGTTAGAGGGCGCGGGC 62.771 66.667 17.31 17.31 38.90 6.13
1631 1732 4.547367 GTTAGAGGGCGCGGGCAT 62.547 66.667 26.61 14.06 42.47 4.40
1632 1733 2.840572 TTAGAGGGCGCGGGCATA 60.841 61.111 26.61 10.00 42.47 3.14
1633 1734 2.214216 TTAGAGGGCGCGGGCATAT 61.214 57.895 26.61 13.52 42.47 1.78
1634 1735 2.449031 TTAGAGGGCGCGGGCATATG 62.449 60.000 26.61 0.00 42.47 1.78
1640 1741 3.941188 CGCGGGCATATGGGAGGT 61.941 66.667 4.56 0.00 0.00 3.85
1641 1742 2.281761 GCGGGCATATGGGAGGTG 60.282 66.667 4.56 0.00 0.00 4.00
1642 1743 2.431683 CGGGCATATGGGAGGTGG 59.568 66.667 4.56 0.00 0.00 4.61
1643 1744 2.146724 CGGGCATATGGGAGGTGGA 61.147 63.158 4.56 0.00 0.00 4.02
1644 1745 1.492133 CGGGCATATGGGAGGTGGAT 61.492 60.000 4.56 0.00 0.00 3.41
1645 1746 0.038744 GGGCATATGGGAGGTGGATG 59.961 60.000 4.56 0.00 0.00 3.51
1646 1747 0.610232 GGCATATGGGAGGTGGATGC 60.610 60.000 4.56 0.00 41.73 3.91
1647 1748 0.610232 GCATATGGGAGGTGGATGCC 60.610 60.000 4.56 0.00 37.52 4.40
1648 1749 0.773014 CATATGGGAGGTGGATGCCA 59.227 55.000 0.00 0.00 45.54 4.92
1649 1750 4.111839 ATGGGAGGTGGATGCCAT 57.888 55.556 0.00 0.00 45.25 4.40
1650 1751 3.009275 TGGGAGGTGGATGCCATG 58.991 61.111 0.00 0.00 35.50 3.66
1651 1752 1.619057 TGGGAGGTGGATGCCATGA 60.619 57.895 0.00 0.00 35.50 3.07
1652 1753 0.995132 TGGGAGGTGGATGCCATGAT 60.995 55.000 0.00 0.00 35.50 2.45
1653 1754 1.067295 GGGAGGTGGATGCCATGATA 58.933 55.000 0.00 0.00 35.28 2.15
1654 1755 1.004044 GGGAGGTGGATGCCATGATAG 59.996 57.143 0.00 0.00 35.28 2.08
1655 1756 1.980765 GGAGGTGGATGCCATGATAGA 59.019 52.381 0.00 0.00 35.28 1.98
1656 1757 2.575279 GGAGGTGGATGCCATGATAGAT 59.425 50.000 0.00 0.00 35.28 1.98
1657 1758 3.776969 GGAGGTGGATGCCATGATAGATA 59.223 47.826 0.00 0.00 35.28 1.98
1658 1759 4.225942 GGAGGTGGATGCCATGATAGATAA 59.774 45.833 0.00 0.00 35.28 1.75
1659 1760 5.426504 GAGGTGGATGCCATGATAGATAAG 58.573 45.833 0.00 0.00 35.28 1.73
1660 1761 3.944015 GGTGGATGCCATGATAGATAAGC 59.056 47.826 0.00 0.00 35.28 3.09
1669 1770 5.353678 GCCATGATAGATAAGCATCTGGAAC 59.646 44.000 0.00 0.00 41.75 3.62
1693 1794 8.948631 ACTGTGATGTATTTAGTCTTGTATGG 57.051 34.615 0.00 0.00 0.00 2.74
1714 1822 6.479972 TGGTGATTTCTTCCGTATCTGTAT 57.520 37.500 0.00 0.00 0.00 2.29
1856 1964 8.621532 TCTTACCTGATTATGTATTTGATGGC 57.378 34.615 0.00 0.00 0.00 4.40
1919 2031 1.639298 GCGAGGCAGTTCGAATTGCT 61.639 55.000 34.84 24.41 43.03 3.91
1960 2072 4.383552 GCTGGTACTTTCTCCATCTCATGT 60.384 45.833 0.00 0.00 33.01 3.21
1961 2073 5.089970 TGGTACTTTCTCCATCTCATGTG 57.910 43.478 0.00 0.00 0.00 3.21
1962 2074 3.873952 GGTACTTTCTCCATCTCATGTGC 59.126 47.826 0.00 0.00 0.00 4.57
1963 2075 3.996921 ACTTTCTCCATCTCATGTGCT 57.003 42.857 0.00 0.00 0.00 4.40
1964 2076 4.298103 ACTTTCTCCATCTCATGTGCTT 57.702 40.909 0.00 0.00 0.00 3.91
1965 2077 4.260170 ACTTTCTCCATCTCATGTGCTTC 58.740 43.478 0.00 0.00 0.00 3.86
1984 2096 7.976734 TGTGCTTCTAGCTTCTTTCTCTATAAC 59.023 37.037 0.00 0.00 42.97 1.89
1985 2097 8.194769 GTGCTTCTAGCTTCTTTCTCTATAACT 58.805 37.037 0.00 0.00 42.97 2.24
1986 2098 8.194104 TGCTTCTAGCTTCTTTCTCTATAACTG 58.806 37.037 0.00 0.00 42.97 3.16
2001 2113 9.498176 TCTCTATAACTGTACATTAGCATACGA 57.502 33.333 0.00 0.00 0.00 3.43
2002 2114 9.762062 CTCTATAACTGTACATTAGCATACGAG 57.238 37.037 0.00 0.00 0.00 4.18
2003 2115 8.235226 TCTATAACTGTACATTAGCATACGAGC 58.765 37.037 0.00 0.00 0.00 5.03
2004 2116 3.629058 ACTGTACATTAGCATACGAGCG 58.371 45.455 0.00 0.00 40.15 5.03
2005 2117 3.314357 ACTGTACATTAGCATACGAGCGA 59.686 43.478 0.00 0.00 40.15 4.93
2006 2118 3.885358 TGTACATTAGCATACGAGCGAG 58.115 45.455 0.00 0.00 40.15 5.03
2007 2119 3.562557 TGTACATTAGCATACGAGCGAGA 59.437 43.478 0.00 0.00 40.15 4.04
2008 2120 3.710326 ACATTAGCATACGAGCGAGAA 57.290 42.857 0.00 0.00 40.15 2.87
2009 2121 3.372954 ACATTAGCATACGAGCGAGAAC 58.627 45.455 0.00 0.00 40.15 3.01
2010 2122 3.181490 ACATTAGCATACGAGCGAGAACA 60.181 43.478 0.00 0.00 40.15 3.18
2011 2123 3.497297 TTAGCATACGAGCGAGAACAA 57.503 42.857 0.00 0.00 40.15 2.83
2012 2124 1.914634 AGCATACGAGCGAGAACAAG 58.085 50.000 0.00 0.00 40.15 3.16
2013 2125 1.202582 AGCATACGAGCGAGAACAAGT 59.797 47.619 0.00 0.00 40.15 3.16
2014 2126 2.422479 AGCATACGAGCGAGAACAAGTA 59.578 45.455 0.00 0.00 40.15 2.24
2015 2127 2.784380 GCATACGAGCGAGAACAAGTAG 59.216 50.000 0.00 0.00 0.00 2.57
2016 2128 3.731264 GCATACGAGCGAGAACAAGTAGT 60.731 47.826 0.00 0.00 0.00 2.73
2017 2129 4.413087 CATACGAGCGAGAACAAGTAGTT 58.587 43.478 0.00 0.00 44.93 2.24
2018 2130 2.662700 ACGAGCGAGAACAAGTAGTTG 58.337 47.619 8.81 8.81 41.51 3.16
2019 2131 1.387084 CGAGCGAGAACAAGTAGTTGC 59.613 52.381 10.30 0.00 41.51 4.17
2020 2132 2.678324 GAGCGAGAACAAGTAGTTGCT 58.322 47.619 10.30 0.00 41.51 3.91
2021 2133 2.664085 GAGCGAGAACAAGTAGTTGCTC 59.336 50.000 10.30 7.85 42.66 4.26
2022 2134 2.035961 AGCGAGAACAAGTAGTTGCTCA 59.964 45.455 14.52 0.00 41.51 4.26
2023 2135 2.996621 GCGAGAACAAGTAGTTGCTCAT 59.003 45.455 14.52 2.08 41.51 2.90
2024 2136 3.433615 GCGAGAACAAGTAGTTGCTCATT 59.566 43.478 14.52 0.78 41.51 2.57
2025 2137 4.625742 GCGAGAACAAGTAGTTGCTCATTA 59.374 41.667 14.52 0.00 41.51 1.90
2026 2138 5.220303 GCGAGAACAAGTAGTTGCTCATTAG 60.220 44.000 14.52 5.38 41.51 1.73
2123 2284 7.775053 AACTAAATGGAAATAGCTGAAACCA 57.225 32.000 0.00 1.40 0.00 3.67
2136 2297 3.372822 GCTGAAACCATGGCATTTGAATG 59.627 43.478 13.04 0.00 39.40 2.67
2142 2303 3.054948 ACCATGGCATTTGAATGGGAAAG 60.055 43.478 13.04 0.00 44.34 2.62
2157 2318 2.890945 GGGAAAGGTGTGTTGCTAATGT 59.109 45.455 0.00 0.00 0.00 2.71
2158 2319 4.076394 GGGAAAGGTGTGTTGCTAATGTA 58.924 43.478 0.00 0.00 0.00 2.29
2159 2320 4.705023 GGGAAAGGTGTGTTGCTAATGTAT 59.295 41.667 0.00 0.00 0.00 2.29
2160 2321 5.185056 GGGAAAGGTGTGTTGCTAATGTATT 59.815 40.000 0.00 0.00 0.00 1.89
2161 2322 6.092748 GGAAAGGTGTGTTGCTAATGTATTG 58.907 40.000 0.00 0.00 0.00 1.90
2162 2323 5.643379 AAGGTGTGTTGCTAATGTATTGG 57.357 39.130 0.00 0.00 0.00 3.16
2163 2324 4.662278 AGGTGTGTTGCTAATGTATTGGT 58.338 39.130 0.00 0.00 0.00 3.67
2164 2325 4.458989 AGGTGTGTTGCTAATGTATTGGTG 59.541 41.667 0.00 0.00 0.00 4.17
2165 2326 4.457603 GGTGTGTTGCTAATGTATTGGTGA 59.542 41.667 0.00 0.00 0.00 4.02
2166 2327 5.390613 GTGTGTTGCTAATGTATTGGTGAC 58.609 41.667 0.00 0.00 0.00 3.67
2167 2328 5.181245 GTGTGTTGCTAATGTATTGGTGACT 59.819 40.000 0.00 0.00 0.00 3.41
2168 2329 5.181056 TGTGTTGCTAATGTATTGGTGACTG 59.819 40.000 0.00 0.00 0.00 3.51
2169 2330 5.411361 GTGTTGCTAATGTATTGGTGACTGA 59.589 40.000 0.00 0.00 0.00 3.41
2170 2331 6.000840 TGTTGCTAATGTATTGGTGACTGAA 58.999 36.000 0.00 0.00 0.00 3.02
2218 2379 8.666573 GCTTAAAACTCCTAAATCTCTTACACC 58.333 37.037 0.00 0.00 0.00 4.16
2219 2380 9.720769 CTTAAAACTCCTAAATCTCTTACACCA 57.279 33.333 0.00 0.00 0.00 4.17
2222 2383 9.668497 AAAACTCCTAAATCTCTTACACCATAC 57.332 33.333 0.00 0.00 0.00 2.39
2223 2384 8.611051 AACTCCTAAATCTCTTACACCATACT 57.389 34.615 0.00 0.00 0.00 2.12
2224 2385 8.240267 ACTCCTAAATCTCTTACACCATACTC 57.760 38.462 0.00 0.00 0.00 2.59
2225 2386 7.288158 ACTCCTAAATCTCTTACACCATACTCC 59.712 40.741 0.00 0.00 0.00 3.85
2226 2387 6.553852 TCCTAAATCTCTTACACCATACTCCC 59.446 42.308 0.00 0.00 0.00 4.30
2227 2388 6.555360 CCTAAATCTCTTACACCATACTCCCT 59.445 42.308 0.00 0.00 0.00 4.20
2228 2389 6.487299 AAATCTCTTACACCATACTCCCTC 57.513 41.667 0.00 0.00 0.00 4.30
2229 2390 3.912248 TCTCTTACACCATACTCCCTCC 58.088 50.000 0.00 0.00 0.00 4.30
2230 2391 2.623889 CTCTTACACCATACTCCCTCCG 59.376 54.545 0.00 0.00 0.00 4.63
2231 2392 2.024655 TCTTACACCATACTCCCTCCGT 60.025 50.000 0.00 0.00 0.00 4.69
2232 2393 2.062971 TACACCATACTCCCTCCGTC 57.937 55.000 0.00 0.00 0.00 4.79
2233 2394 0.686769 ACACCATACTCCCTCCGTCC 60.687 60.000 0.00 0.00 0.00 4.79
2234 2395 1.075450 ACCATACTCCCTCCGTCCC 60.075 63.158 0.00 0.00 0.00 4.46
2235 2396 1.075525 CCATACTCCCTCCGTCCCA 60.076 63.158 0.00 0.00 0.00 4.37
2236 2397 0.689745 CCATACTCCCTCCGTCCCAA 60.690 60.000 0.00 0.00 0.00 4.12
2237 2398 1.200519 CATACTCCCTCCGTCCCAAA 58.799 55.000 0.00 0.00 0.00 3.28
2238 2399 1.557832 CATACTCCCTCCGTCCCAAAA 59.442 52.381 0.00 0.00 0.00 2.44
2239 2400 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2240 2401 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2241 2402 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2242 2403 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2243 2404 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2244 2405 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2245 2406 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2246 2407 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2247 2408 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
2248 2409 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2249 2410 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2250 2411 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2251 2412 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2252 2413 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2253 2414 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2254 2415 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2255 2416 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2256 2417 6.605594 TCCCAAAATAAGTGACTCAACTTTGT 59.394 34.615 0.00 0.00 40.77 2.83
2257 2418 7.776030 TCCCAAAATAAGTGACTCAACTTTGTA 59.224 33.333 0.00 0.00 40.77 2.41
2258 2419 7.860872 CCCAAAATAAGTGACTCAACTTTGTAC 59.139 37.037 0.00 0.00 40.77 2.90
2259 2420 8.621286 CCAAAATAAGTGACTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2265 2426 7.772332 AGTGACTCAACTTTGTACTACTTTG 57.228 36.000 0.00 0.00 0.00 2.77
2266 2427 6.761714 AGTGACTCAACTTTGTACTACTTTGG 59.238 38.462 0.00 0.00 0.00 3.28
2267 2428 5.526111 TGACTCAACTTTGTACTACTTTGGC 59.474 40.000 0.00 0.00 0.00 4.52
2268 2429 5.433526 ACTCAACTTTGTACTACTTTGGCA 58.566 37.500 0.00 0.00 0.00 4.92
2269 2430 5.883673 ACTCAACTTTGTACTACTTTGGCAA 59.116 36.000 0.00 0.00 0.00 4.52
2270 2431 6.376018 ACTCAACTTTGTACTACTTTGGCAAA 59.624 34.615 12.79 12.79 0.00 3.68
2271 2432 6.791303 TCAACTTTGTACTACTTTGGCAAAG 58.209 36.000 32.52 32.52 46.50 2.77
2283 2444 4.432712 CTTTGGCAAAGTTAGTGCAAAGT 58.567 39.130 27.72 0.00 44.07 2.66
2284 2445 4.464069 TTGGCAAAGTTAGTGCAAAGTT 57.536 36.364 0.00 0.00 44.07 2.66
2285 2446 3.779759 TGGCAAAGTTAGTGCAAAGTTG 58.220 40.909 2.16 0.00 44.07 3.16
2286 2447 3.445450 TGGCAAAGTTAGTGCAAAGTTGA 59.555 39.130 2.16 0.00 44.07 3.18
2287 2448 4.044426 GGCAAAGTTAGTGCAAAGTTGAG 58.956 43.478 2.16 0.00 44.07 3.02
2288 2449 4.440112 GGCAAAGTTAGTGCAAAGTTGAGT 60.440 41.667 2.16 0.00 44.07 3.41
2289 2450 4.735338 GCAAAGTTAGTGCAAAGTTGAGTC 59.265 41.667 0.00 0.00 41.80 3.36
2290 2451 5.676079 GCAAAGTTAGTGCAAAGTTGAGTCA 60.676 40.000 0.00 0.00 41.80 3.41
2291 2452 5.485662 AAGTTAGTGCAAAGTTGAGTCAC 57.514 39.130 0.00 0.00 0.00 3.67
2292 2453 4.770795 AGTTAGTGCAAAGTTGAGTCACT 58.229 39.130 0.00 7.60 40.60 3.41
2293 2454 5.186198 AGTTAGTGCAAAGTTGAGTCACTT 58.814 37.500 7.72 0.00 38.74 3.16
2294 2455 6.346096 AGTTAGTGCAAAGTTGAGTCACTTA 58.654 36.000 7.72 0.00 35.87 2.24
2295 2456 6.992715 AGTTAGTGCAAAGTTGAGTCACTTAT 59.007 34.615 7.72 0.00 35.87 1.73
2296 2457 7.499232 AGTTAGTGCAAAGTTGAGTCACTTATT 59.501 33.333 7.72 0.00 35.87 1.40
2297 2458 6.699575 AGTGCAAAGTTGAGTCACTTATTT 57.300 33.333 0.00 0.00 35.87 1.40
2298 2459 7.100458 AGTGCAAAGTTGAGTCACTTATTTT 57.900 32.000 0.00 0.00 35.87 1.82
2299 2460 6.974622 AGTGCAAAGTTGAGTCACTTATTTTG 59.025 34.615 0.00 0.00 35.87 2.44
2300 2461 6.198966 GTGCAAAGTTGAGTCACTTATTTTGG 59.801 38.462 11.16 0.00 35.87 3.28
2301 2462 5.691754 GCAAAGTTGAGTCACTTATTTTGGG 59.308 40.000 11.16 0.00 35.87 4.12
2302 2463 6.460953 GCAAAGTTGAGTCACTTATTTTGGGA 60.461 38.462 11.16 0.00 35.87 4.37
2303 2464 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2304 2465 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2305 2466 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
2306 2467 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
2307 2468 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
2308 2469 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2309 2470 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2310 2471 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2311 2472 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2322 2483 5.070847 TGGGACGGAGGGAGTATAATTTAAC 59.929 44.000 0.00 0.00 0.00 2.01
2383 2553 5.923684 TGAAACCGGCATAATCTTCAAAAAC 59.076 36.000 0.00 0.00 0.00 2.43
2455 2629 2.755650 ACAAGACACTAACTCAAGCCG 58.244 47.619 0.00 0.00 0.00 5.52
2484 2658 5.116180 TGTTAGGACATGCATTACTAGTGC 58.884 41.667 5.39 0.67 42.81 4.40
2905 3314 2.889512 TCTACTTGAGACCCTGCTTCA 58.110 47.619 0.00 0.00 0.00 3.02
2955 3365 7.454694 TCTGCAGGTTAGATCAATAATAGGCTA 59.545 37.037 15.13 0.00 0.00 3.93
2975 3385 5.106673 GGCTATTATCCAAATGTAAGGTCGC 60.107 44.000 0.00 0.00 0.00 5.19
3052 3464 5.801531 TGGTCTTCAGTTAGCAAGACTAA 57.198 39.130 10.96 0.31 45.38 2.24
3062 3474 5.917541 TTAGCAAGACTAACGGTTTTCAG 57.082 39.130 0.00 0.00 35.89 3.02
3070 3485 9.511144 CAAGACTAACGGTTTTCAGTTAAAAAT 57.489 29.630 0.00 0.00 39.23 1.82
3078 3493 9.589111 ACGGTTTTCAGTTAAAAATATGTTTGT 57.411 25.926 0.78 0.00 38.76 2.83
3217 3633 6.997476 AGAAAAGAGTTCAGCAGAAAAGATCT 59.003 34.615 0.00 0.00 39.68 2.75
3368 3786 4.220602 TGGGGTACTGATCATGTCGATATG 59.779 45.833 15.39 15.39 33.17 1.78
3387 3805 4.701956 ATGCACTTACCAAGTTACATGC 57.298 40.909 0.00 0.00 40.46 4.06
3396 3814 3.704061 ACCAAGTTACATGCCAAACAAGT 59.296 39.130 8.39 1.49 33.98 3.16
3433 3871 7.617041 ATCACCTTTATGCTTCTAGTGTTTC 57.383 36.000 0.00 0.00 0.00 2.78
3521 3961 3.054361 ACAGAGTTGTTGGAACTGTCCTT 60.054 43.478 0.00 0.00 45.22 3.36
3539 3979 4.991056 GTCCTTAGCTATTTCGCATGATGA 59.009 41.667 0.00 0.00 0.00 2.92
3585 4025 0.251386 TTTGGCTTTGGCACCGGATA 60.251 50.000 9.46 0.00 37.98 2.59
3986 4441 8.497910 AGACTATAAGAGCATGGATTTTCCTA 57.502 34.615 0.00 0.00 37.46 2.94
4038 4493 9.612066 TTTTCAGAGCAAATGGTTTTTATTCTT 57.388 25.926 0.00 0.00 0.00 2.52
4045 4500 9.394767 AGCAAATGGTTTTTATTCTTCACTTTT 57.605 25.926 0.00 0.00 0.00 2.27
4200 4662 7.227512 CCCAATAAACTAGCCATACAGAAAGAG 59.772 40.741 0.00 0.00 0.00 2.85
4212 4674 2.290577 ACAGAAAGAGCAAGATGGGGTC 60.291 50.000 0.00 0.00 0.00 4.46
4266 4728 5.383476 GACCAATCAGAGGATGAATTGGAT 58.617 41.667 17.36 4.47 42.81 3.41
4311 4773 2.638363 ACTGGAGGGAAGTAGTTTGGAC 59.362 50.000 0.00 0.00 0.00 4.02
4329 4791 1.300465 CGGGGATGAGCTCGTGATG 60.300 63.158 14.59 0.00 0.00 3.07
4333 4798 1.576356 GGATGAGCTCGTGATGGAAC 58.424 55.000 14.59 0.00 0.00 3.62
4347 4812 1.518367 TGGAACAACTGGAGGGAAGT 58.482 50.000 0.00 0.00 31.92 3.01
4348 4813 2.696775 TGGAACAACTGGAGGGAAGTA 58.303 47.619 0.00 0.00 31.92 2.24
4349 4814 2.637872 TGGAACAACTGGAGGGAAGTAG 59.362 50.000 0.00 0.00 31.92 2.57
4350 4815 2.638363 GGAACAACTGGAGGGAAGTAGT 59.362 50.000 0.00 0.00 0.00 2.73
4351 4816 3.072622 GGAACAACTGGAGGGAAGTAGTT 59.927 47.826 0.00 0.00 33.94 2.24
4352 4817 4.445879 GGAACAACTGGAGGGAAGTAGTTT 60.446 45.833 0.00 0.00 31.47 2.66
4353 4818 4.086706 ACAACTGGAGGGAAGTAGTTTG 57.913 45.455 0.00 0.00 31.47 2.93
4354 4819 3.181443 ACAACTGGAGGGAAGTAGTTTGG 60.181 47.826 0.00 0.00 31.47 3.28
4355 4820 2.986050 ACTGGAGGGAAGTAGTTTGGA 58.014 47.619 0.00 0.00 0.00 3.53
4356 4821 2.638363 ACTGGAGGGAAGTAGTTTGGAC 59.362 50.000 0.00 0.00 0.00 4.02
4357 4822 1.621814 TGGAGGGAAGTAGTTTGGACG 59.378 52.381 0.00 0.00 0.00 4.79
4358 4823 1.066358 GGAGGGAAGTAGTTTGGACGG 60.066 57.143 0.00 0.00 0.00 4.79
4359 4824 0.981943 AGGGAAGTAGTTTGGACGGG 59.018 55.000 0.00 0.00 0.00 5.28
4360 4825 0.035725 GGGAAGTAGTTTGGACGGGG 60.036 60.000 0.00 0.00 0.00 5.73
4361 4826 0.978907 GGAAGTAGTTTGGACGGGGA 59.021 55.000 0.00 0.00 0.00 4.81
4362 4827 1.558294 GGAAGTAGTTTGGACGGGGAT 59.442 52.381 0.00 0.00 0.00 3.85
4363 4828 2.629051 GAAGTAGTTTGGACGGGGATG 58.371 52.381 0.00 0.00 0.00 3.51
4364 4829 1.946984 AGTAGTTTGGACGGGGATGA 58.053 50.000 0.00 0.00 0.00 2.92
4365 4830 1.831736 AGTAGTTTGGACGGGGATGAG 59.168 52.381 0.00 0.00 0.00 2.90
4366 4831 0.539986 TAGTTTGGACGGGGATGAGC 59.460 55.000 0.00 0.00 0.00 4.26
4367 4832 1.201429 AGTTTGGACGGGGATGAGCT 61.201 55.000 0.00 0.00 0.00 4.09
4368 4833 0.744771 GTTTGGACGGGGATGAGCTC 60.745 60.000 6.82 6.82 0.00 4.09
4369 4834 2.238847 TTTGGACGGGGATGAGCTCG 62.239 60.000 9.64 0.00 0.00 5.03
4370 4835 4.593864 GGACGGGGATGAGCTCGC 62.594 72.222 9.64 3.37 36.12 5.03
4371 4836 4.933064 GACGGGGATGAGCTCGCG 62.933 72.222 9.64 8.63 43.41 5.87
4373 4838 3.983494 CGGGGATGAGCTCGCGAT 61.983 66.667 10.36 0.00 40.92 4.58
4374 4839 2.626780 CGGGGATGAGCTCGCGATA 61.627 63.158 10.36 0.00 40.92 2.92
4375 4840 1.214062 GGGGATGAGCTCGCGATAG 59.786 63.158 10.36 0.00 37.69 2.08
4376 4841 1.244697 GGGGATGAGCTCGCGATAGA 61.245 60.000 10.36 0.00 37.69 1.98
4377 4842 0.598562 GGGATGAGCTCGCGATAGAA 59.401 55.000 10.36 0.00 39.76 2.10
4378 4843 1.667467 GGGATGAGCTCGCGATAGAAC 60.667 57.143 10.36 0.42 39.76 3.01
4379 4844 1.001268 GGATGAGCTCGCGATAGAACA 60.001 52.381 10.36 6.67 39.76 3.18
4380 4845 2.543861 GGATGAGCTCGCGATAGAACAA 60.544 50.000 10.36 0.00 39.76 2.83
4385 4850 1.736032 GCTCGCGATAGAACAACTGGT 60.736 52.381 10.36 0.00 39.76 4.00
4450 4915 1.368374 TAGCTGTAAAGCCCAAGGGT 58.632 50.000 7.05 0.00 37.65 4.34
4520 4987 6.161855 TGTCGCATCTTGTCTAATATTCCT 57.838 37.500 0.00 0.00 0.00 3.36
4523 4990 6.146347 GTCGCATCTTGTCTAATATTCCTTCC 59.854 42.308 0.00 0.00 0.00 3.46
4549 5016 5.295950 TCGGAAATAAGTGACGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
4550 5017 5.406175 TCGGAAATAAGTGACGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
4551 5018 5.178067 CGGAAATAAGTGACGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
4552 5019 6.293027 CGGAAATAAGTGACGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
4553 5020 7.073883 GGAAATAAGTGACGTGGTTTTAGTTC 58.926 38.462 0.00 1.82 31.34 3.01
4554 5021 7.254863 GGAAATAAGTGACGTGGTTTTAGTTCA 60.255 37.037 0.00 0.00 32.83 3.18
4584 5052 4.572909 ACTAACCCACGTCACTTATTTCC 58.427 43.478 0.00 0.00 0.00 3.13
4599 5067 3.790152 ATTTCCGAACGGAGGTAGTAC 57.210 47.619 15.34 0.00 46.06 2.73
4607 5075 6.772716 TCCGAACGGAGGTAGTACTTAATTAT 59.227 38.462 12.04 0.00 39.76 1.28
4750 5232 8.275015 TGACATTCTTTGTTACAAAAGACTGA 57.725 30.769 21.42 11.23 43.89 3.41
4781 5263 6.266131 TCTAGATTGGCCATCAATAAACCT 57.734 37.500 6.09 0.00 45.36 3.50
4782 5264 6.672593 TCTAGATTGGCCATCAATAAACCTT 58.327 36.000 6.09 0.00 45.36 3.50
4854 5521 5.425217 AGATAATTGGATGGTTTTGGTTCCC 59.575 40.000 0.00 0.00 0.00 3.97
4858 5525 2.309162 TGGATGGTTTTGGTTCCCGATA 59.691 45.455 0.00 0.00 0.00 2.92
4892 5559 8.989980 GTAAGATATGCATTGTACTTAAGGTCC 58.010 37.037 3.54 0.00 0.00 4.46
4954 5653 6.127647 CCAAGTATAAGAATCAGGCAAGCAAA 60.128 38.462 0.00 0.00 0.00 3.68
4955 5654 6.690194 AGTATAAGAATCAGGCAAGCAAAG 57.310 37.500 0.00 0.00 0.00 2.77
4957 5656 1.920610 AGAATCAGGCAAGCAAAGCT 58.079 45.000 0.00 0.00 42.56 3.74
4958 5657 1.817447 AGAATCAGGCAAGCAAAGCTC 59.183 47.619 0.00 0.00 38.25 4.09
4961 5660 2.674380 AGGCAAGCAAAGCTCGGG 60.674 61.111 0.00 0.00 38.25 5.14
4963 5662 2.694760 GGCAAGCAAAGCTCGGGAG 61.695 63.158 0.00 0.00 38.25 4.30
5006 5707 1.257743 TAGTGTCCTGTCACCTGAGC 58.742 55.000 0.00 0.00 38.91 4.26
5022 5723 1.078214 AGCAGCTTAGCCGCATTGA 60.078 52.632 15.15 0.00 34.23 2.57
5055 5785 4.522789 TGGACTAAGGGCAAATTTCTGTTC 59.477 41.667 0.00 0.00 0.00 3.18
5084 5814 1.081892 CCATTCTCGTGCAACTGGAG 58.918 55.000 0.00 0.00 31.75 3.86
5095 5825 3.381590 GTGCAACTGGAGTCTTTTTCCTT 59.618 43.478 0.00 0.00 35.67 3.36
5118 5848 4.201773 TGAGTGAACTTGCTACGTGTTTTG 60.202 41.667 0.00 0.00 0.00 2.44
5124 5854 4.900664 ACTTGCTACGTGTTTTGTACAAC 58.099 39.130 8.07 0.00 38.80 3.32
5199 5929 9.219603 CCATGATTTGATGATACTAACCGTTAT 57.780 33.333 0.00 0.00 0.00 1.89
5210 5940 4.320870 ACTAACCGTTATGTTGACCCTTG 58.679 43.478 0.00 0.00 0.00 3.61
5214 5944 1.199097 CGTTATGTTGACCCTTGTGGC 59.801 52.381 0.00 0.00 37.83 5.01
5374 6142 6.451393 GCTACCATGTGAACATTTTGGTTTA 58.549 36.000 11.39 0.00 37.74 2.01
5396 6164 1.671261 GGGCCTCGAATCATCATCTCG 60.671 57.143 0.84 0.00 0.00 4.04
5409 6177 2.267426 TCATCTCGCATTGTACCAACG 58.733 47.619 0.00 0.00 0.00 4.10
5441 6209 2.345991 GCTTGGGACCGTGCAGTA 59.654 61.111 0.00 0.00 0.00 2.74
5442 6210 1.302192 GCTTGGGACCGTGCAGTAA 60.302 57.895 0.00 0.00 0.00 2.24
5443 6211 1.298859 GCTTGGGACCGTGCAGTAAG 61.299 60.000 0.00 0.00 0.00 2.34
5444 6212 0.034896 CTTGGGACCGTGCAGTAAGT 59.965 55.000 0.00 0.00 0.00 2.24
5461 6229 5.915758 CAGTAAGTGAGTCAGTAACAGTCAC 59.084 44.000 0.00 0.21 34.72 3.67
5462 6230 5.593095 AGTAAGTGAGTCAGTAACAGTCACA 59.407 40.000 0.00 0.00 36.17 3.58
5463 6231 4.576216 AGTGAGTCAGTAACAGTCACAG 57.424 45.455 0.00 0.00 36.17 3.66
5464 6232 3.954904 AGTGAGTCAGTAACAGTCACAGT 59.045 43.478 0.00 0.00 36.17 3.55
5465 6233 4.036971 AGTGAGTCAGTAACAGTCACAGTC 59.963 45.833 0.00 0.00 36.17 3.51
5466 6234 3.951680 TGAGTCAGTAACAGTCACAGTCA 59.048 43.478 0.00 0.00 0.00 3.41
5467 6235 4.202020 TGAGTCAGTAACAGTCACAGTCAC 60.202 45.833 0.00 0.00 0.00 3.67
5470 6238 2.034179 CAGTAACAGTCACAGTCACGGA 59.966 50.000 0.00 0.00 0.00 4.69
5488 6256 3.640029 ACGGAGACTGTTAGGAAAGTTCA 59.360 43.478 0.00 0.00 0.00 3.18
5504 6272 3.412386 AGTTCACTTGTATTGCCTGGTC 58.588 45.455 0.00 0.00 0.00 4.02
5546 6314 0.524392 TTGTTTTGGCGCTGTCGTTG 60.524 50.000 7.64 0.00 38.14 4.10
5547 6315 1.063488 GTTTTGGCGCTGTCGTTGT 59.937 52.632 7.64 0.00 38.14 3.32
5555 6324 1.463444 GCGCTGTCGTTGTAAATCCTT 59.537 47.619 0.00 0.00 38.14 3.36
5563 6332 2.412325 CGTTGTAAATCCTTGTCGGTGC 60.412 50.000 0.00 0.00 0.00 5.01
5724 6525 5.667978 TTTTAACGTGCGTTTCAAGTTTC 57.332 34.783 15.16 0.00 43.20 2.78
5725 6526 2.904011 AACGTGCGTTTCAAGTTTCA 57.096 40.000 3.97 0.00 43.20 2.69
5727 6528 2.511879 ACGTGCGTTTCAAGTTTCAAC 58.488 42.857 0.00 0.00 33.60 3.18
5728 6529 1.843753 CGTGCGTTTCAAGTTTCAACC 59.156 47.619 0.00 0.00 0.00 3.77
5729 6530 2.729467 CGTGCGTTTCAAGTTTCAACCA 60.729 45.455 0.00 0.00 0.00 3.67
5745 6546 5.766150 TCAACCACAACTGTTCCATAAAG 57.234 39.130 0.00 0.00 0.00 1.85
5748 6549 2.231235 CCACAACTGTTCCATAAAGCCC 59.769 50.000 0.00 0.00 0.00 5.19
5751 6552 3.964031 ACAACTGTTCCATAAAGCCCAAA 59.036 39.130 0.00 0.00 0.00 3.28
5754 6555 3.573967 ACTGTTCCATAAAGCCCAAACTG 59.426 43.478 0.00 0.00 0.00 3.16
5770 6571 4.441913 CCAAACTGTCTTGCTCATTTGGTT 60.442 41.667 5.56 0.00 40.67 3.67
5811 6612 9.691362 GTGTCTCTAATTCATTTTAAGCCAAAA 57.309 29.630 0.00 0.00 40.34 2.44
5823 6624 8.744568 ATTTTAAGCCAAAAATGAAGTTCCAA 57.255 26.923 0.00 0.00 39.51 3.53
5824 6625 8.567285 TTTTAAGCCAAAAATGAAGTTCCAAA 57.433 26.923 0.00 0.00 33.14 3.28
5825 6626 7.546778 TTAAGCCAAAAATGAAGTTCCAAAC 57.453 32.000 0.00 0.00 0.00 2.93
5826 6627 5.357742 AGCCAAAAATGAAGTTCCAAACT 57.642 34.783 0.00 0.00 45.46 2.66
5827 6628 5.118286 AGCCAAAAATGAAGTTCCAAACTG 58.882 37.500 0.00 0.00 41.91 3.16
5828 6629 5.104982 AGCCAAAAATGAAGTTCCAAACTGA 60.105 36.000 0.00 0.00 41.91 3.41
5829 6630 5.584251 GCCAAAAATGAAGTTCCAAACTGAA 59.416 36.000 0.00 0.00 41.91 3.02
5830 6631 6.260714 GCCAAAAATGAAGTTCCAAACTGAAT 59.739 34.615 0.00 0.00 41.91 2.57
5831 6632 7.518848 GCCAAAAATGAAGTTCCAAACTGAATC 60.519 37.037 0.00 0.00 41.91 2.52
5832 6633 7.495279 CCAAAAATGAAGTTCCAAACTGAATCA 59.505 33.333 0.00 0.00 41.91 2.57
5840 6663 8.424274 AAGTTCCAAACTGAATCAAATTTCAC 57.576 30.769 0.00 0.00 41.91 3.18
5878 6701 2.870411 AGTAAAGCCTGTGAACAACGTC 59.130 45.455 0.00 0.00 0.00 4.34
5886 6709 2.004017 TGTGAACAACGTCAACCAGAC 58.996 47.619 0.00 0.00 44.02 3.51
5964 6787 1.273606 CCCCTGTAGAGTATGGCGATG 59.726 57.143 0.00 0.00 0.00 3.84
5989 6812 5.220710 AGTTGCTGATCTACATGGGATAC 57.779 43.478 0.00 0.00 0.00 2.24
6146 6972 2.162681 GTGGCTGTCAACCTAAGCAAT 58.837 47.619 0.00 0.00 38.73 3.56
6163 6989 1.534163 CAATGCAGGATGATGGCGTAG 59.466 52.381 0.00 0.00 39.69 3.51
6312 7139 6.478344 CCTTAGAGCATCACTAGAATCAACAC 59.522 42.308 0.00 0.00 37.82 3.32
6315 7142 5.873712 AGAGCATCACTAGAATCAACACAAG 59.126 40.000 0.00 0.00 37.82 3.16
6381 7212 4.511527 ACCACACATTTCATAGAGCTGAG 58.488 43.478 0.00 0.00 0.00 3.35
6410 7242 2.930040 ACATATCAAGAAAGCGTCACCG 59.070 45.455 0.00 0.00 37.07 4.94
6414 7246 3.034721 TCAAGAAAGCGTCACCGTATT 57.965 42.857 0.00 0.00 36.15 1.89
6422 7254 2.159366 AGCGTCACCGTATTCTCTTGAG 60.159 50.000 0.00 0.00 36.15 3.02
6432 7265 1.176619 TTCTCTTGAGACGGCGACCA 61.177 55.000 16.62 5.07 0.00 4.02
6456 7290 6.018588 CACAAACGTGTAGGTAAATGAAGTCA 60.019 38.462 0.00 0.00 35.72 3.41
6624 7462 5.986135 AGAGGAGCTGCTATAATTTACAACG 59.014 40.000 8.12 0.00 0.00 4.10
6638 7476 5.595257 TTTACAACGGGCTTTAAGGTTTT 57.405 34.783 0.00 0.00 0.00 2.43
6639 7477 3.720949 ACAACGGGCTTTAAGGTTTTC 57.279 42.857 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 55 4.530161 ACTATTGGCTAAGGAGATGGCTAG 59.470 45.833 2.05 0.00 0.00 3.42
132 133 1.881973 GTTGATGCTCAAACCTGCAGA 59.118 47.619 17.39 0.00 42.74 4.26
161 162 1.389106 GACGCGTATTGGACTGTGAAC 59.611 52.381 13.97 0.00 0.00 3.18
195 196 3.812053 GACGATGAAAAGGATGAGATGGG 59.188 47.826 0.00 0.00 0.00 4.00
274 275 0.458025 GGACAGGACGGTCGAATCAC 60.458 60.000 1.43 0.00 38.70 3.06
304 308 1.586154 GCTCATGGGTTTGGACACCG 61.586 60.000 0.00 0.00 37.76 4.94
322 326 1.520342 GAGGCAGAGTCGGTGATGC 60.520 63.158 0.00 0.00 37.95 3.91
429 433 6.041865 TCTGAGAAGAAGATTCAGGATCATCC 59.958 42.308 0.00 0.00 39.01 3.51
473 477 1.010797 CTTGGATCAAATCGCGCCG 60.011 57.895 0.00 0.00 0.00 6.46
490 494 3.307762 CGGATTTCTCCAAGGGTTTCTCT 60.308 47.826 0.00 0.00 42.19 3.10
561 565 1.376553 GAGAGCTGACCAAGGTGGC 60.377 63.158 0.00 0.93 42.67 5.01
576 589 1.034838 GGAAGCGCAGGAGAGAGAGA 61.035 60.000 11.47 0.00 0.00 3.10
577 590 1.318886 TGGAAGCGCAGGAGAGAGAG 61.319 60.000 11.47 0.00 0.00 3.20
640 664 1.949631 CGACGGCGAAATCCCTAGC 60.950 63.158 16.62 0.00 40.82 3.42
656 680 3.154473 CCAGGAATCTCCCGCCGA 61.154 66.667 0.00 0.00 37.19 5.54
863 897 1.315690 CTGCTGATAATGTGGGCCTG 58.684 55.000 4.53 0.00 0.00 4.85
1365 1409 0.615331 CAGCTAAGTGGAGCAGGGAA 59.385 55.000 0.00 0.00 45.43 3.97
1366 1410 1.903877 GCAGCTAAGTGGAGCAGGGA 61.904 60.000 0.00 0.00 45.43 4.20
1367 1411 1.451028 GCAGCTAAGTGGAGCAGGG 60.451 63.158 0.00 0.00 45.43 4.45
1368 1412 1.451028 GGCAGCTAAGTGGAGCAGG 60.451 63.158 0.00 0.00 45.43 4.85
1369 1413 1.451028 GGGCAGCTAAGTGGAGCAG 60.451 63.158 0.00 0.00 45.43 4.24
1370 1414 2.223443 TGGGCAGCTAAGTGGAGCA 61.223 57.895 0.00 0.00 45.43 4.26
1371 1415 1.746991 GTGGGCAGCTAAGTGGAGC 60.747 63.158 0.00 0.00 43.19 4.70
1373 1417 0.035152 CATGTGGGCAGCTAAGTGGA 60.035 55.000 0.00 0.00 0.00 4.02
1374 1418 0.322816 ACATGTGGGCAGCTAAGTGG 60.323 55.000 0.00 0.00 0.00 4.00
1376 1420 1.888512 CAAACATGTGGGCAGCTAAGT 59.111 47.619 0.00 0.00 0.00 2.24
1377 1421 1.403249 GCAAACATGTGGGCAGCTAAG 60.403 52.381 15.04 0.00 0.00 2.18
1378 1422 0.602562 GCAAACATGTGGGCAGCTAA 59.397 50.000 15.04 0.00 0.00 3.09
1380 1424 2.922950 CGCAAACATGTGGGCAGCT 61.923 57.895 18.63 0.00 0.00 4.24
1381 1425 2.431260 CGCAAACATGTGGGCAGC 60.431 61.111 18.63 9.57 0.00 5.25
1382 1426 1.081242 GACGCAAACATGTGGGCAG 60.081 57.895 18.63 14.04 34.94 4.85
1384 1428 2.126888 CGACGCAAACATGTGGGC 60.127 61.111 0.00 5.44 34.94 5.36
1385 1429 1.206578 GACGACGCAAACATGTGGG 59.793 57.895 0.00 0.00 37.47 4.61
1463 1530 9.528018 AACATTAATACCGCAAATAATCCAAAG 57.472 29.630 0.00 0.00 0.00 2.77
1472 1539 5.124645 TCGGGTAACATTAATACCGCAAAT 58.875 37.500 0.00 0.00 43.12 2.32
1509 1576 7.160547 ACATATGTTCATTTGCAGACATGAA 57.839 32.000 1.41 11.88 37.12 2.57
1607 1708 0.172803 CGCGCCCTCTAACAACTACT 59.827 55.000 0.00 0.00 0.00 2.57
1608 1709 0.804933 CCGCGCCCTCTAACAACTAC 60.805 60.000 0.00 0.00 0.00 2.73
1609 1710 1.514087 CCGCGCCCTCTAACAACTA 59.486 57.895 0.00 0.00 0.00 2.24
1610 1711 2.264794 CCGCGCCCTCTAACAACT 59.735 61.111 0.00 0.00 0.00 3.16
1611 1712 2.818274 CCCGCGCCCTCTAACAAC 60.818 66.667 0.00 0.00 0.00 3.32
1612 1713 4.770874 GCCCGCGCCCTCTAACAA 62.771 66.667 0.00 0.00 0.00 2.83
1614 1715 2.450479 ATATGCCCGCGCCCTCTAAC 62.450 60.000 0.00 0.00 0.00 2.34
1615 1716 2.214216 ATATGCCCGCGCCCTCTAA 61.214 57.895 0.00 0.00 0.00 2.10
1616 1717 2.603473 ATATGCCCGCGCCCTCTA 60.603 61.111 0.00 0.00 0.00 2.43
1617 1718 4.320456 CATATGCCCGCGCCCTCT 62.320 66.667 0.00 0.00 0.00 3.69
1623 1724 3.941188 ACCTCCCATATGCCCGCG 61.941 66.667 0.00 0.00 0.00 6.46
1624 1725 2.281761 CACCTCCCATATGCCCGC 60.282 66.667 0.00 0.00 0.00 6.13
1625 1726 1.492133 ATCCACCTCCCATATGCCCG 61.492 60.000 0.00 0.00 0.00 6.13
1626 1727 0.038744 CATCCACCTCCCATATGCCC 59.961 60.000 0.00 0.00 0.00 5.36
1627 1728 0.610232 GCATCCACCTCCCATATGCC 60.610 60.000 0.00 0.00 37.55 4.40
1628 1729 0.610232 GGCATCCACCTCCCATATGC 60.610 60.000 0.00 0.00 41.69 3.14
1629 1730 0.773014 TGGCATCCACCTCCCATATG 59.227 55.000 0.00 0.00 0.00 1.78
1630 1731 1.356738 CATGGCATCCACCTCCCATAT 59.643 52.381 0.00 0.00 35.80 1.78
1631 1732 0.773014 CATGGCATCCACCTCCCATA 59.227 55.000 0.00 0.00 35.80 2.74
1632 1733 0.995132 TCATGGCATCCACCTCCCAT 60.995 55.000 0.00 0.00 35.80 4.00
1633 1734 0.995132 ATCATGGCATCCACCTCCCA 60.995 55.000 0.00 0.00 35.80 4.37
1634 1735 1.004044 CTATCATGGCATCCACCTCCC 59.996 57.143 0.00 0.00 35.80 4.30
1635 1736 1.980765 TCTATCATGGCATCCACCTCC 59.019 52.381 0.00 0.00 35.80 4.30
1636 1737 3.996921 ATCTATCATGGCATCCACCTC 57.003 47.619 0.00 0.00 35.80 3.85
1637 1738 4.324099 GCTTATCTATCATGGCATCCACCT 60.324 45.833 0.00 0.00 35.80 4.00
1638 1739 3.944015 GCTTATCTATCATGGCATCCACC 59.056 47.826 0.00 0.00 35.80 4.61
1639 1740 4.582869 TGCTTATCTATCATGGCATCCAC 58.417 43.478 0.00 0.00 35.80 4.02
1640 1741 4.914177 TGCTTATCTATCATGGCATCCA 57.086 40.909 0.00 0.00 38.19 3.41
1643 1744 5.191124 TCCAGATGCTTATCTATCATGGCAT 59.809 40.000 0.00 0.00 42.05 4.40
1644 1745 4.533311 TCCAGATGCTTATCTATCATGGCA 59.467 41.667 0.00 0.00 0.00 4.92
1645 1746 5.095145 TCCAGATGCTTATCTATCATGGC 57.905 43.478 0.00 0.00 0.00 4.40
1646 1747 6.594547 CAGTTCCAGATGCTTATCTATCATGG 59.405 42.308 0.00 0.00 0.00 3.66
1647 1748 7.117956 CACAGTTCCAGATGCTTATCTATCATG 59.882 40.741 0.00 0.00 0.00 3.07
1648 1749 7.015974 TCACAGTTCCAGATGCTTATCTATCAT 59.984 37.037 0.00 0.00 0.00 2.45
1649 1750 6.324770 TCACAGTTCCAGATGCTTATCTATCA 59.675 38.462 0.00 0.00 0.00 2.15
1650 1751 6.753180 TCACAGTTCCAGATGCTTATCTATC 58.247 40.000 0.00 0.00 0.00 2.08
1651 1752 6.737720 TCACAGTTCCAGATGCTTATCTAT 57.262 37.500 0.00 0.00 0.00 1.98
1652 1753 6.098838 ACATCACAGTTCCAGATGCTTATCTA 59.901 38.462 0.00 0.00 42.12 1.98
1653 1754 5.104610 ACATCACAGTTCCAGATGCTTATCT 60.105 40.000 0.00 0.00 42.12 1.98
1654 1755 5.121811 ACATCACAGTTCCAGATGCTTATC 58.878 41.667 0.00 0.00 42.12 1.75
1655 1756 5.108187 ACATCACAGTTCCAGATGCTTAT 57.892 39.130 0.00 0.00 42.12 1.73
1656 1757 4.558226 ACATCACAGTTCCAGATGCTTA 57.442 40.909 0.00 0.00 42.12 3.09
1657 1758 3.430042 ACATCACAGTTCCAGATGCTT 57.570 42.857 0.00 0.00 42.12 3.91
1658 1759 4.767578 ATACATCACAGTTCCAGATGCT 57.232 40.909 0.00 0.00 42.12 3.79
1659 1760 5.824904 AAATACATCACAGTTCCAGATGC 57.175 39.130 0.00 0.00 42.12 3.91
1660 1761 7.984050 AGACTAAATACATCACAGTTCCAGATG 59.016 37.037 0.00 0.00 43.56 2.90
1669 1770 8.820933 CACCATACAAGACTAAATACATCACAG 58.179 37.037 0.00 0.00 0.00 3.66
1693 1794 9.692749 TGAATATACAGATACGGAAGAAATCAC 57.307 33.333 0.00 0.00 32.20 3.06
1856 1964 1.079127 AGGGACGAATGAAGGTGCG 60.079 57.895 0.00 0.00 0.00 5.34
1919 2031 7.994911 AGTACCAGCATAAGATCATTTTCATCA 59.005 33.333 0.00 0.00 0.00 3.07
1960 2072 8.194104 CAGTTATAGAGAAAGAAGCTAGAAGCA 58.806 37.037 1.22 0.00 45.56 3.91
1961 2073 8.194769 ACAGTTATAGAGAAAGAAGCTAGAAGC 58.805 37.037 0.00 0.00 42.84 3.86
1964 2076 9.682465 TGTACAGTTATAGAGAAAGAAGCTAGA 57.318 33.333 0.00 0.00 0.00 2.43
1984 2096 3.885358 TCGCTCGTATGCTAATGTACAG 58.115 45.455 0.33 0.00 0.00 2.74
1985 2097 3.562557 TCTCGCTCGTATGCTAATGTACA 59.437 43.478 0.00 0.00 0.00 2.90
1986 2098 4.143194 TCTCGCTCGTATGCTAATGTAC 57.857 45.455 0.00 0.00 0.00 2.90
1993 2105 1.202582 ACTTGTTCTCGCTCGTATGCT 59.797 47.619 0.00 0.00 0.00 3.79
1994 2106 1.630148 ACTTGTTCTCGCTCGTATGC 58.370 50.000 0.00 0.00 0.00 3.14
1996 2108 4.413087 CAACTACTTGTTCTCGCTCGTAT 58.587 43.478 0.00 0.00 36.63 3.06
1997 2109 3.818387 CAACTACTTGTTCTCGCTCGTA 58.182 45.455 0.00 0.00 36.63 3.43
1998 2110 2.662700 CAACTACTTGTTCTCGCTCGT 58.337 47.619 0.00 0.00 36.63 4.18
1999 2111 1.387084 GCAACTACTTGTTCTCGCTCG 59.613 52.381 0.00 0.00 36.63 5.03
2000 2112 2.664085 GAGCAACTACTTGTTCTCGCTC 59.336 50.000 0.00 0.00 36.63 5.03
2001 2113 2.035961 TGAGCAACTACTTGTTCTCGCT 59.964 45.455 0.00 0.00 38.20 4.93
2002 2114 2.404215 TGAGCAACTACTTGTTCTCGC 58.596 47.619 0.00 0.00 38.20 5.03
2003 2115 6.324522 CTAATGAGCAACTACTTGTTCTCG 57.675 41.667 0.00 0.00 38.20 4.04
2019 2131 3.544356 TCTCGCTCGTATGCTAATGAG 57.456 47.619 4.32 4.32 35.89 2.90
2020 2132 3.066203 TGTTCTCGCTCGTATGCTAATGA 59.934 43.478 0.00 0.00 0.00 2.57
2021 2133 3.372060 TGTTCTCGCTCGTATGCTAATG 58.628 45.455 0.00 0.00 0.00 1.90
2022 2134 3.710326 TGTTCTCGCTCGTATGCTAAT 57.290 42.857 0.00 0.00 0.00 1.73
2023 2135 3.435566 CTTGTTCTCGCTCGTATGCTAA 58.564 45.455 0.00 0.00 0.00 3.09
2024 2136 2.794981 GCTTGTTCTCGCTCGTATGCTA 60.795 50.000 0.00 0.00 0.00 3.49
2025 2137 1.914634 CTTGTTCTCGCTCGTATGCT 58.085 50.000 0.00 0.00 0.00 3.79
2026 2138 0.299003 GCTTGTTCTCGCTCGTATGC 59.701 55.000 0.00 0.00 0.00 3.14
2027 2139 1.585668 CTGCTTGTTCTCGCTCGTATG 59.414 52.381 0.00 0.00 0.00 2.39
2028 2140 1.202582 ACTGCTTGTTCTCGCTCGTAT 59.797 47.619 0.00 0.00 0.00 3.06
2029 2141 0.596577 ACTGCTTGTTCTCGCTCGTA 59.403 50.000 0.00 0.00 0.00 3.43
2030 2142 0.249489 AACTGCTTGTTCTCGCTCGT 60.249 50.000 0.00 0.00 32.63 4.18
2031 2143 0.162507 CAACTGCTTGTTCTCGCTCG 59.837 55.000 0.00 0.00 36.63 5.03
2032 2144 1.221414 ACAACTGCTTGTTCTCGCTC 58.779 50.000 0.00 0.00 37.31 5.03
2108 2269 4.660789 ATGCCATGGTTTCAGCTATTTC 57.339 40.909 14.67 0.00 0.00 2.17
2123 2284 3.054948 CACCTTTCCCATTCAAATGCCAT 60.055 43.478 0.00 0.00 35.08 4.40
2136 2297 2.890945 ACATTAGCAACACACCTTTCCC 59.109 45.455 0.00 0.00 0.00 3.97
2142 2303 4.457603 TCACCAATACATTAGCAACACACC 59.542 41.667 0.00 0.00 0.00 4.16
2157 2318 7.390440 CCTCACAAGTTATTTCAGTCACCAATA 59.610 37.037 0.00 0.00 0.00 1.90
2158 2319 6.207417 CCTCACAAGTTATTTCAGTCACCAAT 59.793 38.462 0.00 0.00 0.00 3.16
2159 2320 5.530915 CCTCACAAGTTATTTCAGTCACCAA 59.469 40.000 0.00 0.00 0.00 3.67
2160 2321 5.063204 CCTCACAAGTTATTTCAGTCACCA 58.937 41.667 0.00 0.00 0.00 4.17
2161 2322 5.179555 GTCCTCACAAGTTATTTCAGTCACC 59.820 44.000 0.00 0.00 0.00 4.02
2162 2323 5.758296 TGTCCTCACAAGTTATTTCAGTCAC 59.242 40.000 0.00 0.00 0.00 3.67
2163 2324 5.924356 TGTCCTCACAAGTTATTTCAGTCA 58.076 37.500 0.00 0.00 0.00 3.41
2164 2325 6.223852 TCTGTCCTCACAAGTTATTTCAGTC 58.776 40.000 0.00 0.00 29.82 3.51
2165 2326 6.174720 TCTGTCCTCACAAGTTATTTCAGT 57.825 37.500 0.00 0.00 29.82 3.41
2166 2327 7.678947 AATCTGTCCTCACAAGTTATTTCAG 57.321 36.000 0.00 0.00 29.82 3.02
2167 2328 7.334421 GCTAATCTGTCCTCACAAGTTATTTCA 59.666 37.037 0.00 0.00 29.82 2.69
2168 2329 7.550906 AGCTAATCTGTCCTCACAAGTTATTTC 59.449 37.037 0.00 0.00 29.82 2.17
2169 2330 7.398024 AGCTAATCTGTCCTCACAAGTTATTT 58.602 34.615 0.00 0.00 29.82 1.40
2170 2331 6.951971 AGCTAATCTGTCCTCACAAGTTATT 58.048 36.000 0.00 0.00 29.82 1.40
2215 2376 1.400530 GGGACGGAGGGAGTATGGTG 61.401 65.000 0.00 0.00 0.00 4.17
2218 2379 1.200519 TTTGGGACGGAGGGAGTATG 58.799 55.000 0.00 0.00 0.00 2.39
2219 2380 1.961133 TTTTGGGACGGAGGGAGTAT 58.039 50.000 0.00 0.00 0.00 2.12
2220 2381 1.961133 ATTTTGGGACGGAGGGAGTA 58.039 50.000 0.00 0.00 0.00 2.59
2222 2383 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
2223 2384 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
2224 2385 2.026636 TCACTTATTTTGGGACGGAGGG 60.027 50.000 0.00 0.00 0.00 4.30
2225 2386 3.007635 GTCACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
2226 2387 3.933332 GAGTCACTTATTTTGGGACGGAG 59.067 47.826 0.00 0.00 33.84 4.63
2227 2388 3.325425 TGAGTCACTTATTTTGGGACGGA 59.675 43.478 0.00 0.00 33.84 4.69
2228 2389 3.670625 TGAGTCACTTATTTTGGGACGG 58.329 45.455 0.00 0.00 33.84 4.79
2229 2390 4.755123 AGTTGAGTCACTTATTTTGGGACG 59.245 41.667 0.00 0.00 33.84 4.79
2230 2391 6.635030 AAGTTGAGTCACTTATTTTGGGAC 57.365 37.500 0.00 0.00 35.10 4.46
2231 2392 6.605594 ACAAAGTTGAGTCACTTATTTTGGGA 59.394 34.615 12.94 0.00 35.87 4.37
2232 2393 6.805713 ACAAAGTTGAGTCACTTATTTTGGG 58.194 36.000 12.94 0.00 35.87 4.12
2233 2394 8.621286 AGTACAAAGTTGAGTCACTTATTTTGG 58.379 33.333 12.94 0.78 35.87 3.28
2239 2400 9.309516 CAAAGTAGTACAAAGTTGAGTCACTTA 57.690 33.333 2.52 0.00 35.87 2.24
2240 2401 7.280205 CCAAAGTAGTACAAAGTTGAGTCACTT 59.720 37.037 2.52 0.00 38.74 3.16
2241 2402 6.761714 CCAAAGTAGTACAAAGTTGAGTCACT 59.238 38.462 2.52 0.00 0.00 3.41
2242 2403 6.511282 GCCAAAGTAGTACAAAGTTGAGTCAC 60.511 42.308 2.52 0.00 0.00 3.67
2243 2404 5.526111 GCCAAAGTAGTACAAAGTTGAGTCA 59.474 40.000 2.52 0.00 0.00 3.41
2244 2405 5.526111 TGCCAAAGTAGTACAAAGTTGAGTC 59.474 40.000 2.52 0.00 0.00 3.36
2245 2406 5.433526 TGCCAAAGTAGTACAAAGTTGAGT 58.566 37.500 2.52 0.00 0.00 3.41
2246 2407 6.371809 TTGCCAAAGTAGTACAAAGTTGAG 57.628 37.500 2.52 0.00 0.00 3.02
2247 2408 6.761099 TTTGCCAAAGTAGTACAAAGTTGA 57.239 33.333 2.52 0.00 0.00 3.18
2261 2422 4.432712 ACTTTGCACTAACTTTGCCAAAG 58.567 39.130 15.47 15.47 44.10 2.77
2262 2423 4.464069 ACTTTGCACTAACTTTGCCAAA 57.536 36.364 0.00 0.00 39.39 3.28
2263 2424 4.081972 TCAACTTTGCACTAACTTTGCCAA 60.082 37.500 0.00 0.00 39.39 4.52
2264 2425 3.445450 TCAACTTTGCACTAACTTTGCCA 59.555 39.130 0.00 0.00 39.39 4.92
2265 2426 4.040445 TCAACTTTGCACTAACTTTGCC 57.960 40.909 0.00 0.00 39.39 4.52
2266 2427 4.672409 ACTCAACTTTGCACTAACTTTGC 58.328 39.130 0.00 0.00 40.63 3.68
2267 2428 5.739161 GTGACTCAACTTTGCACTAACTTTG 59.261 40.000 0.00 0.00 0.00 2.77
2268 2429 5.648092 AGTGACTCAACTTTGCACTAACTTT 59.352 36.000 0.00 0.00 37.98 2.66
2269 2430 5.186198 AGTGACTCAACTTTGCACTAACTT 58.814 37.500 0.00 0.00 37.98 2.66
2270 2431 4.770795 AGTGACTCAACTTTGCACTAACT 58.229 39.130 0.00 0.00 37.98 2.24
2271 2432 5.485662 AAGTGACTCAACTTTGCACTAAC 57.514 39.130 0.00 0.00 37.05 2.34
2272 2433 7.801716 AATAAGTGACTCAACTTTGCACTAA 57.198 32.000 0.00 0.00 40.77 2.24
2273 2434 7.801716 AAATAAGTGACTCAACTTTGCACTA 57.198 32.000 0.00 0.00 40.77 2.74
2274 2435 6.699575 AAATAAGTGACTCAACTTTGCACT 57.300 33.333 0.00 0.00 40.77 4.40
2275 2436 6.198966 CCAAAATAAGTGACTCAACTTTGCAC 59.801 38.462 0.00 0.00 40.77 4.57
2276 2437 6.272318 CCAAAATAAGTGACTCAACTTTGCA 58.728 36.000 0.00 0.00 40.77 4.08
2277 2438 5.691754 CCCAAAATAAGTGACTCAACTTTGC 59.308 40.000 0.00 0.00 40.77 3.68
2278 2439 6.918022 GTCCCAAAATAAGTGACTCAACTTTG 59.082 38.462 0.00 0.00 40.77 2.77
2279 2440 6.238648 CGTCCCAAAATAAGTGACTCAACTTT 60.239 38.462 0.00 0.00 40.77 2.66
2280 2441 5.238650 CGTCCCAAAATAAGTGACTCAACTT 59.761 40.000 0.00 0.00 42.89 2.66
2281 2442 4.755123 CGTCCCAAAATAAGTGACTCAACT 59.245 41.667 0.00 0.00 0.00 3.16
2282 2443 4.083484 CCGTCCCAAAATAAGTGACTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
2283 2444 4.069304 CCGTCCCAAAATAAGTGACTCAA 58.931 43.478 0.00 0.00 0.00 3.02
2284 2445 3.325425 TCCGTCCCAAAATAAGTGACTCA 59.675 43.478 0.00 0.00 0.00 3.41
2285 2446 3.933332 CTCCGTCCCAAAATAAGTGACTC 59.067 47.826 0.00 0.00 0.00 3.36
2286 2447 3.307480 CCTCCGTCCCAAAATAAGTGACT 60.307 47.826 0.00 0.00 0.00 3.41
2287 2448 3.007635 CCTCCGTCCCAAAATAAGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
2288 2449 2.026636 CCCTCCGTCCCAAAATAAGTGA 60.027 50.000 0.00 0.00 0.00 3.41
2289 2450 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
2290 2451 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
2291 2452 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
2292 2453 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
2293 2454 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
2294 2455 1.961133 TACTCCCTCCGTCCCAAAAT 58.039 50.000 0.00 0.00 0.00 1.82
2295 2456 1.961133 ATACTCCCTCCGTCCCAAAA 58.039 50.000 0.00 0.00 0.00 2.44
2296 2457 2.852714 TATACTCCCTCCGTCCCAAA 57.147 50.000 0.00 0.00 0.00 3.28
2297 2458 2.852714 TTATACTCCCTCCGTCCCAA 57.147 50.000 0.00 0.00 0.00 4.12
2298 2459 3.339713 AATTATACTCCCTCCGTCCCA 57.660 47.619 0.00 0.00 0.00 4.37
2299 2460 5.070847 TGTTAAATTATACTCCCTCCGTCCC 59.929 44.000 0.00 0.00 0.00 4.46
2300 2461 6.165700 TGTTAAATTATACTCCCTCCGTCC 57.834 41.667 0.00 0.00 0.00 4.79
2301 2462 9.939802 ATATTGTTAAATTATACTCCCTCCGTC 57.060 33.333 0.00 0.00 0.00 4.79
2322 2483 8.730680 GGGGTTATTACTATGTGAGCAATATTG 58.269 37.037 11.27 11.27 0.00 1.90
2345 2514 3.194755 CCGGTTTCATTTCTAAAAGGGGG 59.805 47.826 0.00 0.00 0.00 5.40
2455 2629 9.197694 CTAGTAATGCATGTCCTAACAAGATAC 57.802 37.037 0.00 0.00 39.30 2.24
2851 3259 5.534654 AGCTGCAGGACATTGTTTACTTTAA 59.465 36.000 17.12 0.00 0.00 1.52
2905 3314 5.312895 TGCCATGTACAAGTTTGACATAGT 58.687 37.500 0.00 0.00 32.04 2.12
2955 3365 4.787551 TGGCGACCTTACATTTGGATAAT 58.212 39.130 0.00 0.00 0.00 1.28
2958 3368 2.026262 ACTGGCGACCTTACATTTGGAT 60.026 45.455 0.00 0.00 0.00 3.41
2962 3372 4.251268 GAGTAACTGGCGACCTTACATTT 58.749 43.478 8.28 0.00 0.00 2.32
2975 3385 4.238514 GACTGTGCTAACTGAGTAACTGG 58.761 47.826 0.00 0.00 0.00 4.00
3025 3437 3.769739 TGCTAACTGAAGACCATGTGT 57.230 42.857 0.00 0.00 0.00 3.72
3052 3464 9.589111 ACAAACATATTTTTAACTGAAAACCGT 57.411 25.926 0.00 0.00 36.74 4.83
3156 3572 6.764094 TCGTACTTGTGTTTTCTGTACAAAC 58.236 36.000 0.00 0.00 34.30 2.93
3217 3633 9.841295 ATGAGTTAGTAGAAAAGTTTACCAACA 57.159 29.630 0.00 0.00 35.05 3.33
3368 3786 2.817258 TGGCATGTAACTTGGTAAGTGC 59.183 45.455 0.00 0.00 41.91 4.40
3387 3805 9.180678 GTGATAACATAAAGAACACTTGTTTGG 57.819 33.333 0.00 0.00 38.56 3.28
3396 3814 9.461312 AGCATAAAGGTGATAACATAAAGAACA 57.539 29.630 0.00 0.00 0.00 3.18
3433 3871 7.075741 AGTTCATCAAAATACTTCCGTTTTCG 58.924 34.615 0.00 0.00 43.67 3.46
3454 3892 7.719633 TCCATTATGCCTAATCTAACCAAGTTC 59.280 37.037 0.00 0.00 0.00 3.01
3521 3961 7.494298 TGTTACTTTCATCATGCGAAATAGCTA 59.506 33.333 9.66 0.00 38.13 3.32
3570 4010 1.440145 GAGCTATCCGGTGCCAAAGC 61.440 60.000 0.00 2.89 40.48 3.51
4010 4465 9.815936 GAATAAAAACCATTTGCTCTGAAAATG 57.184 29.630 7.52 7.52 42.24 2.32
4019 4474 8.962884 AAAGTGAAGAATAAAAACCATTTGCT 57.037 26.923 0.00 0.00 0.00 3.91
4200 4662 0.968405 TTTTGCTGACCCCATCTTGC 59.032 50.000 0.00 0.00 0.00 4.01
4212 4674 2.023673 TCCACAGTGTCCTTTTTGCTG 58.976 47.619 0.00 0.00 0.00 4.41
4266 4728 1.873270 CGATCACAGTGTCGTCCCCA 61.873 60.000 14.01 0.00 33.42 4.96
4311 4773 1.300465 CATCACGAGCTCATCCCCG 60.300 63.158 15.40 1.03 0.00 5.73
4329 4791 2.638363 ACTACTTCCCTCCAGTTGTTCC 59.362 50.000 0.00 0.00 27.32 3.62
4333 4798 3.072476 TCCAAACTACTTCCCTCCAGTTG 59.928 47.826 0.00 0.00 31.80 3.16
4334 4799 3.072622 GTCCAAACTACTTCCCTCCAGTT 59.927 47.826 0.00 0.00 32.73 3.16
4335 4800 2.638363 GTCCAAACTACTTCCCTCCAGT 59.362 50.000 0.00 0.00 0.00 4.00
4336 4801 2.353803 CGTCCAAACTACTTCCCTCCAG 60.354 54.545 0.00 0.00 0.00 3.86
4337 4802 1.621814 CGTCCAAACTACTTCCCTCCA 59.378 52.381 0.00 0.00 0.00 3.86
4338 4803 1.066358 CCGTCCAAACTACTTCCCTCC 60.066 57.143 0.00 0.00 0.00 4.30
4339 4804 1.066358 CCCGTCCAAACTACTTCCCTC 60.066 57.143 0.00 0.00 0.00 4.30
4340 4805 0.981943 CCCGTCCAAACTACTTCCCT 59.018 55.000 0.00 0.00 0.00 4.20
4341 4806 0.035725 CCCCGTCCAAACTACTTCCC 60.036 60.000 0.00 0.00 0.00 3.97
4342 4807 0.978907 TCCCCGTCCAAACTACTTCC 59.021 55.000 0.00 0.00 0.00 3.46
4343 4808 2.235402 TCATCCCCGTCCAAACTACTTC 59.765 50.000 0.00 0.00 0.00 3.01
4344 4809 2.236395 CTCATCCCCGTCCAAACTACTT 59.764 50.000 0.00 0.00 0.00 2.24
4345 4810 1.831736 CTCATCCCCGTCCAAACTACT 59.168 52.381 0.00 0.00 0.00 2.57
4346 4811 1.742750 GCTCATCCCCGTCCAAACTAC 60.743 57.143 0.00 0.00 0.00 2.73
4347 4812 0.539986 GCTCATCCCCGTCCAAACTA 59.460 55.000 0.00 0.00 0.00 2.24
4348 4813 1.201429 AGCTCATCCCCGTCCAAACT 61.201 55.000 0.00 0.00 0.00 2.66
4349 4814 0.744771 GAGCTCATCCCCGTCCAAAC 60.745 60.000 9.40 0.00 0.00 2.93
4350 4815 1.602237 GAGCTCATCCCCGTCCAAA 59.398 57.895 9.40 0.00 0.00 3.28
4351 4816 2.721167 CGAGCTCATCCCCGTCCAA 61.721 63.158 15.40 0.00 0.00 3.53
4352 4817 3.147595 CGAGCTCATCCCCGTCCA 61.148 66.667 15.40 0.00 0.00 4.02
4353 4818 4.593864 GCGAGCTCATCCCCGTCC 62.594 72.222 15.40 0.00 0.00 4.79
4354 4819 4.933064 CGCGAGCTCATCCCCGTC 62.933 72.222 15.40 0.00 0.00 4.79
4356 4821 2.534856 CTATCGCGAGCTCATCCCCG 62.535 65.000 16.66 7.84 0.00 5.73
4357 4822 1.214062 CTATCGCGAGCTCATCCCC 59.786 63.158 16.66 0.00 0.00 4.81
4358 4823 0.598562 TTCTATCGCGAGCTCATCCC 59.401 55.000 16.66 0.00 0.00 3.85
4359 4824 1.001268 TGTTCTATCGCGAGCTCATCC 60.001 52.381 16.66 0.00 0.00 3.51
4360 4825 2.407521 TGTTCTATCGCGAGCTCATC 57.592 50.000 16.66 3.61 0.00 2.92
4361 4826 2.099921 AGTTGTTCTATCGCGAGCTCAT 59.900 45.455 16.66 0.00 0.00 2.90
4362 4827 1.472878 AGTTGTTCTATCGCGAGCTCA 59.527 47.619 16.66 6.56 0.00 4.26
4363 4828 1.849219 CAGTTGTTCTATCGCGAGCTC 59.151 52.381 16.66 2.73 0.00 4.09
4364 4829 1.469940 CCAGTTGTTCTATCGCGAGCT 60.470 52.381 16.66 0.00 0.00 4.09
4365 4830 0.924090 CCAGTTGTTCTATCGCGAGC 59.076 55.000 16.66 2.72 0.00 5.03
4366 4831 1.920574 CACCAGTTGTTCTATCGCGAG 59.079 52.381 16.66 1.05 0.00 5.03
4367 4832 1.403647 CCACCAGTTGTTCTATCGCGA 60.404 52.381 13.09 13.09 0.00 5.87
4368 4833 0.999406 CCACCAGTTGTTCTATCGCG 59.001 55.000 0.00 0.00 0.00 5.87
4369 4834 2.380084 TCCACCAGTTGTTCTATCGC 57.620 50.000 0.00 0.00 0.00 4.58
4370 4835 4.315803 ACTTTCCACCAGTTGTTCTATCG 58.684 43.478 0.00 0.00 0.00 2.92
4371 4836 6.371825 CCTTACTTTCCACCAGTTGTTCTATC 59.628 42.308 0.00 0.00 0.00 2.08
4372 4837 6.043938 TCCTTACTTTCCACCAGTTGTTCTAT 59.956 38.462 0.00 0.00 0.00 1.98
4373 4838 5.367352 TCCTTACTTTCCACCAGTTGTTCTA 59.633 40.000 0.00 0.00 0.00 2.10
4374 4839 4.165372 TCCTTACTTTCCACCAGTTGTTCT 59.835 41.667 0.00 0.00 0.00 3.01
4375 4840 4.457466 TCCTTACTTTCCACCAGTTGTTC 58.543 43.478 0.00 0.00 0.00 3.18
4376 4841 4.513406 TCCTTACTTTCCACCAGTTGTT 57.487 40.909 0.00 0.00 0.00 2.83
4377 4842 4.204799 GTTCCTTACTTTCCACCAGTTGT 58.795 43.478 0.00 0.00 0.00 3.32
4378 4843 3.568430 GGTTCCTTACTTTCCACCAGTTG 59.432 47.826 0.00 0.00 0.00 3.16
4379 4844 3.462205 AGGTTCCTTACTTTCCACCAGTT 59.538 43.478 0.00 0.00 0.00 3.16
4380 4845 3.053826 AGGTTCCTTACTTTCCACCAGT 58.946 45.455 0.00 0.00 0.00 4.00
4385 4850 3.971305 TGTCTCAGGTTCCTTACTTTCCA 59.029 43.478 0.00 0.00 0.00 3.53
4450 4915 3.260884 ACCTTCTAAAATCAGAGACGGCA 59.739 43.478 0.00 0.00 35.10 5.69
4523 4990 2.091588 CCACGTCACTTATTTCCGAACG 59.908 50.000 0.00 0.00 0.00 3.95
4551 5018 5.357314 TGACGTGGGTTAGTTCAAATTTGAA 59.643 36.000 26.01 26.01 44.31 2.69
4552 5019 4.882427 TGACGTGGGTTAGTTCAAATTTGA 59.118 37.500 16.91 16.91 34.92 2.69
4553 5020 4.973663 GTGACGTGGGTTAGTTCAAATTTG 59.026 41.667 12.15 12.15 0.00 2.32
4554 5021 4.885325 AGTGACGTGGGTTAGTTCAAATTT 59.115 37.500 0.00 0.00 0.00 1.82
4567 5034 2.373540 TCGGAAATAAGTGACGTGGG 57.626 50.000 0.00 0.00 0.00 4.61
4571 5039 2.597305 CTCCGTTCGGAAATAAGTGACG 59.403 50.000 14.79 0.00 33.41 4.35
4584 5052 7.420800 ACATAATTAAGTACTACCTCCGTTCG 58.579 38.462 0.00 0.00 0.00 3.95
4607 5075 8.177119 AGAAAAGCACCAAATGATACTAAACA 57.823 30.769 0.00 0.00 0.00 2.83
4781 5263 7.110155 AGTTTCAGAGGTCACTTTCAGTAAAA 58.890 34.615 0.00 0.00 0.00 1.52
4782 5264 6.650120 AGTTTCAGAGGTCACTTTCAGTAAA 58.350 36.000 0.00 0.00 0.00 2.01
4882 5549 4.929819 AACATTTTTGCGGACCTTAAGT 57.070 36.364 0.97 0.00 0.00 2.24
4892 5559 8.272176 TCACAAGCTTTAATTAACATTTTTGCG 58.728 29.630 0.00 0.00 0.00 4.85
4958 5657 3.849951 ATGGCCGTAGTGCTCCCG 61.850 66.667 0.00 0.00 0.00 5.14
4961 5660 2.897350 GGCATGGCCGTAGTGCTC 60.897 66.667 8.35 7.99 39.62 4.26
5006 5707 0.248377 GCTTCAATGCGGCTAAGCTG 60.248 55.000 16.82 0.00 40.87 4.24
5022 5723 2.619074 GCCCTTAGTCCATTGACAGCTT 60.619 50.000 0.00 0.00 44.33 3.74
5055 5785 2.819115 CACGAGAATGGTCCTCTCATG 58.181 52.381 8.46 0.42 39.50 3.07
5084 5814 5.037385 GCAAGTTCACTCAAGGAAAAAGAC 58.963 41.667 0.00 0.00 0.00 3.01
5095 5825 2.882927 ACACGTAGCAAGTTCACTCA 57.117 45.000 0.00 0.00 0.00 3.41
5118 5848 7.964604 AGGACAGAAATTACAGAAGTTGTAC 57.035 36.000 0.00 0.00 41.86 2.90
5192 5922 2.500229 CACAAGGGTCAACATAACGGT 58.500 47.619 0.00 0.00 0.00 4.83
5199 5929 1.786937 ATTTGCCACAAGGGTCAACA 58.213 45.000 0.00 0.00 39.65 3.33
5214 5944 5.319140 TCATCATCAGGCAAGTGAATTTG 57.681 39.130 0.00 0.00 0.00 2.32
5358 6126 3.556213 GGCCCCTAAACCAAAATGTTCAC 60.556 47.826 0.00 0.00 0.00 3.18
5374 6142 0.689623 GATGATGATTCGAGGCCCCT 59.310 55.000 0.00 0.00 0.00 4.79
5409 6177 3.118519 TCCCAAGCCGTTTAGTAGATTCC 60.119 47.826 0.00 0.00 0.00 3.01
5441 6209 4.402793 ACTGTGACTGTTACTGACTCACTT 59.597 41.667 14.79 1.00 35.54 3.16
5442 6210 3.954904 ACTGTGACTGTTACTGACTCACT 59.045 43.478 14.79 0.00 35.54 3.41
5443 6211 4.202020 TGACTGTGACTGTTACTGACTCAC 60.202 45.833 14.79 6.20 35.25 3.51
5444 6212 3.951680 TGACTGTGACTGTTACTGACTCA 59.048 43.478 14.79 7.44 0.00 3.41
5463 6231 3.005578 ACTTTCCTAACAGTCTCCGTGAC 59.994 47.826 0.00 0.00 45.67 3.67
5464 6232 3.228453 ACTTTCCTAACAGTCTCCGTGA 58.772 45.455 0.00 0.00 0.00 4.35
5465 6233 3.662247 ACTTTCCTAACAGTCTCCGTG 57.338 47.619 0.00 0.00 0.00 4.94
5466 6234 3.640029 TGAACTTTCCTAACAGTCTCCGT 59.360 43.478 0.00 0.00 0.00 4.69
5467 6235 3.988517 GTGAACTTTCCTAACAGTCTCCG 59.011 47.826 0.00 0.00 0.00 4.63
5470 6238 5.990668 ACAAGTGAACTTTCCTAACAGTCT 58.009 37.500 0.00 0.00 33.11 3.24
5473 6241 7.078228 GCAATACAAGTGAACTTTCCTAACAG 58.922 38.462 0.00 0.00 33.11 3.16
5488 6256 0.035439 CCGGACCAGGCAATACAAGT 60.035 55.000 0.00 0.00 0.00 3.16
5504 6272 0.387622 CTTGCTGACAACAATGCCGG 60.388 55.000 0.00 0.00 0.00 6.13
5546 6314 2.159627 CACAGCACCGACAAGGATTTAC 59.840 50.000 0.00 0.00 45.00 2.01
5547 6315 2.422597 CACAGCACCGACAAGGATTTA 58.577 47.619 0.00 0.00 45.00 1.40
5555 6324 1.112916 TCTTCTCCACAGCACCGACA 61.113 55.000 0.00 0.00 0.00 4.35
5563 6332 3.692101 ACGACTACTGATCTTCTCCACAG 59.308 47.826 0.00 0.00 36.58 3.66
5621 6396 1.787012 GCACTTCCAGCCAAATGTTG 58.213 50.000 0.00 0.00 0.00 3.33
5642 6417 7.728532 AGATAGAAATTACTCTCCCTCTTCTCC 59.271 40.741 0.00 0.00 0.00 3.71
5643 6418 8.706322 AGATAGAAATTACTCTCCCTCTTCTC 57.294 38.462 0.00 0.00 0.00 2.87
5706 6507 2.904011 TGAAACTTGAAACGCACGTT 57.096 40.000 1.93 1.93 40.29 3.99
5707 6508 2.511879 GTTGAAACTTGAAACGCACGT 58.488 42.857 0.00 0.00 0.00 4.49
5710 6511 2.229062 TGTGGTTGAAACTTGAAACGCA 59.771 40.909 0.00 0.00 29.27 5.24
5714 6515 5.461032 ACAGTTGTGGTTGAAACTTGAAA 57.539 34.783 0.00 0.00 34.41 2.69
5745 6546 1.251251 ATGAGCAAGACAGTTTGGGC 58.749 50.000 0.00 0.00 0.00 5.36
5748 6549 4.311816 ACCAAATGAGCAAGACAGTTTG 57.688 40.909 0.00 0.00 0.00 2.93
5751 6552 5.009010 CACTTAACCAAATGAGCAAGACAGT 59.991 40.000 0.00 0.00 0.00 3.55
5754 6555 4.229876 GCACTTAACCAAATGAGCAAGAC 58.770 43.478 0.00 0.00 0.00 3.01
5770 6571 5.468540 AGAGACACATAACAGTGCACTTA 57.531 39.130 18.94 8.86 43.23 2.24
5811 6612 9.617523 AAATTTGATTCAGTTTGGAACTTCATT 57.382 25.926 0.00 0.00 40.46 2.57
5812 6613 9.264719 GAAATTTGATTCAGTTTGGAACTTCAT 57.735 29.630 0.00 0.00 40.46 2.57
5813 6614 8.256605 TGAAATTTGATTCAGTTTGGAACTTCA 58.743 29.630 0.00 0.00 40.46 3.02
5814 6615 8.542953 GTGAAATTTGATTCAGTTTGGAACTTC 58.457 33.333 0.00 0.00 40.46 3.01
5815 6616 8.040132 TGTGAAATTTGATTCAGTTTGGAACTT 58.960 29.630 0.00 0.00 40.46 2.66
5816 6617 7.555087 TGTGAAATTTGATTCAGTTTGGAACT 58.445 30.769 0.00 0.00 44.06 3.01
5817 6618 7.769272 TGTGAAATTTGATTCAGTTTGGAAC 57.231 32.000 0.00 0.00 39.84 3.62
5818 6619 7.821359 TGTTGTGAAATTTGATTCAGTTTGGAA 59.179 29.630 0.00 0.00 39.84 3.53
5819 6620 7.277539 GTGTTGTGAAATTTGATTCAGTTTGGA 59.722 33.333 0.00 0.00 39.84 3.53
5820 6621 7.401080 GTGTTGTGAAATTTGATTCAGTTTGG 58.599 34.615 0.00 0.00 39.84 3.28
5821 6622 7.112397 CGTGTTGTGAAATTTGATTCAGTTTG 58.888 34.615 0.00 0.00 39.84 2.93
5822 6623 6.811170 ACGTGTTGTGAAATTTGATTCAGTTT 59.189 30.769 0.00 0.43 39.84 2.66
5823 6624 6.329496 ACGTGTTGTGAAATTTGATTCAGTT 58.671 32.000 0.00 0.00 39.84 3.16
5824 6625 5.890334 ACGTGTTGTGAAATTTGATTCAGT 58.110 33.333 0.00 0.00 39.84 3.41
5825 6626 5.399301 GGACGTGTTGTGAAATTTGATTCAG 59.601 40.000 0.00 0.00 39.84 3.02
5826 6627 5.277825 GGACGTGTTGTGAAATTTGATTCA 58.722 37.500 0.00 0.00 36.99 2.57
5827 6628 4.378616 CGGACGTGTTGTGAAATTTGATTC 59.621 41.667 0.00 0.00 0.00 2.52
5828 6629 4.201970 ACGGACGTGTTGTGAAATTTGATT 60.202 37.500 0.00 0.00 0.00 2.57
5829 6630 3.314080 ACGGACGTGTTGTGAAATTTGAT 59.686 39.130 0.00 0.00 0.00 2.57
5830 6631 2.678836 ACGGACGTGTTGTGAAATTTGA 59.321 40.909 0.00 0.00 0.00 2.69
5831 6632 3.059634 ACGGACGTGTTGTGAAATTTG 57.940 42.857 0.00 0.00 0.00 2.32
5832 6633 3.430931 CAACGGACGTGTTGTGAAATTT 58.569 40.909 9.89 0.00 43.28 1.82
5878 6701 0.876777 TTGCCGTACGTGTCTGGTTG 60.877 55.000 15.21 0.00 0.00 3.77
5886 6709 0.385473 CCTTGCTTTTGCCGTACGTG 60.385 55.000 15.21 6.95 46.87 4.49
5964 6787 4.517285 TCCCATGTAGATCAGCAACTTTC 58.483 43.478 0.00 0.00 0.00 2.62
6146 6972 1.447217 CCTACGCCATCATCCTGCA 59.553 57.895 0.00 0.00 0.00 4.41
6163 6989 7.785033 TGTATACAACTAGTTTAGTTAGGCCC 58.215 38.462 5.07 0.00 46.66 5.80
6312 7139 1.470098 GTGCTGGAACTGTATGGCTTG 59.530 52.381 0.00 0.00 0.00 4.01
6315 7142 2.691409 TAGTGCTGGAACTGTATGGC 57.309 50.000 0.00 0.00 0.00 4.40
6351 7178 6.533730 TCTATGAAATGTGTGGTTTGTCTCT 58.466 36.000 0.00 0.00 0.00 3.10
6381 7212 6.546395 ACGCTTTCTTGATATGTCAATGTTC 58.454 36.000 5.26 0.00 43.08 3.18
6410 7242 2.452105 GTCGCCGTCTCAAGAGAATAC 58.548 52.381 0.57 0.00 39.48 1.89
6414 7246 1.602605 TGGTCGCCGTCTCAAGAGA 60.603 57.895 0.00 0.00 34.56 3.10
6422 7254 2.963320 ACGTTTGTGGTCGCCGTC 60.963 61.111 0.00 0.00 0.00 4.79
6432 7265 6.050432 TGACTTCATTTACCTACACGTTTGT 58.950 36.000 0.00 0.00 40.02 2.83
6456 7290 2.097110 TGACAGGTTCCTGGTACACT 57.903 50.000 20.88 0.93 38.30 3.55
6624 7462 2.029649 GGTTCCGAAAACCTTAAAGCCC 60.030 50.000 11.22 0.00 37.34 5.19
6638 7476 1.550524 CTGAGGATGTTGAGGTTCCGA 59.449 52.381 0.00 0.00 34.61 4.55
6639 7477 1.276421 ACTGAGGATGTTGAGGTTCCG 59.724 52.381 0.00 0.00 34.61 4.30
6648 7486 3.144506 CAGCTCACAAACTGAGGATGTT 58.855 45.455 0.00 0.00 46.08 2.71
6721 7559 3.867600 GCATGGAAGAGAAGTCAGCAAGA 60.868 47.826 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.