Multiple sequence alignment - TraesCS6D01G336200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G336200 chr6D 100.000 5523 0 0 1 5523 437181033 437175511 0.000000e+00 10200.0
1 TraesCS6D01G336200 chr6D 97.872 94 2 0 393 486 120647322 120647229 4.430000e-36 163.0
2 TraesCS6D01G336200 chr6D 91.045 67 6 0 182 248 437180786 437180720 2.120000e-14 91.6
3 TraesCS6D01G336200 chr6D 91.045 67 6 0 248 314 437180852 437180786 2.120000e-14 91.6
4 TraesCS6D01G336200 chr6A 94.530 3656 148 28 1894 5523 585441325 585437696 0.000000e+00 5596.0
5 TraesCS6D01G336200 chr6A 89.359 780 54 15 800 1577 585442273 585441521 0.000000e+00 953.0
6 TraesCS6D01G336200 chr6A 91.392 395 24 3 3 397 585447183 585446799 2.930000e-147 532.0
7 TraesCS6D01G336200 chr6A 92.273 220 16 1 479 698 585446800 585446582 1.490000e-80 311.0
8 TraesCS6D01G336200 chr6A 93.421 152 8 1 1576 1727 585441562 585441413 2.000000e-54 224.0
9 TraesCS6D01G336200 chr6A 96.842 95 3 0 393 487 553003191 553003285 5.730000e-35 159.0
10 TraesCS6D01G336200 chr6A 91.781 73 3 2 1789 1858 585441398 585441326 1.270000e-16 99.0
11 TraesCS6D01G336200 chr6B 91.978 3029 183 30 1576 4584 661466834 661463846 0.000000e+00 4193.0
12 TraesCS6D01G336200 chr6B 87.991 891 56 24 694 1576 661467641 661466794 0.000000e+00 1005.0
13 TraesCS6D01G336200 chr6B 88.889 225 23 2 4846 5068 661463366 661463142 5.450000e-70 276.0
14 TraesCS6D01G336200 chr6B 87.879 165 15 3 5087 5246 661463155 661462991 7.300000e-44 189.0
15 TraesCS6D01G336200 chr6B 82.301 226 20 6 4622 4829 661463847 661463624 1.580000e-40 178.0
16 TraesCS6D01G336200 chr6B 91.964 112 6 2 5414 5522 661462391 661462280 2.660000e-33 154.0
17 TraesCS6D01G336200 chr6B 93.333 105 3 3 396 500 288999187 288999287 9.580000e-33 152.0
18 TraesCS6D01G336200 chr4A 89.325 459 45 2 4051 4505 658750345 658749887 1.730000e-159 573.0
19 TraesCS6D01G336200 chr4A 89.107 459 46 2 4051 4505 658796853 658796395 8.030000e-158 568.0
20 TraesCS6D01G336200 chr5B 89.683 126 9 4 376 498 585809709 585809833 2.060000e-34 158.0
21 TraesCS6D01G336200 chr2D 94.175 103 6 0 396 498 555221186 555221084 2.060000e-34 158.0
22 TraesCS6D01G336200 chr2B 95.050 101 4 1 388 487 779865695 779865595 2.060000e-34 158.0
23 TraesCS6D01G336200 chr2B 92.453 106 7 1 376 480 8590745 8590850 3.450000e-32 150.0
24 TraesCS6D01G336200 chr4B 94.118 102 5 1 383 484 518148319 518148219 2.660000e-33 154.0
25 TraesCS6D01G336200 chr7B 88.983 118 10 3 380 496 199270466 199270351 5.770000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G336200 chr6D 437175511 437181033 5522 True 3461.066667 10200 94.030000 1 5523 3 chr6D.!!$R2 5522
1 TraesCS6D01G336200 chr6A 585437696 585442273 4577 True 1718.000000 5596 92.272750 800 5523 4 chr6A.!!$R1 4723
2 TraesCS6D01G336200 chr6A 585446582 585447183 601 True 421.500000 532 91.832500 3 698 2 chr6A.!!$R2 695
3 TraesCS6D01G336200 chr6B 661462280 661467641 5361 True 999.166667 4193 88.500333 694 5522 6 chr6B.!!$R1 4828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
85 86 0.103208 ACCGCCGAAATTTGTTGCAA 59.897 45.0 0.00 0.00 0.00 4.08 F
727 728 0.602638 TTCAATGCGGAGTCGTGCTT 60.603 50.0 7.41 0.00 38.89 3.91 F
1315 1319 0.752376 AGGGAGTACGGAGCTAGTGC 60.752 60.0 4.72 3.52 40.05 4.40 F
2465 2482 0.692476 AACTATGTGGCAGTGGCTCA 59.308 50.0 21.69 21.69 40.87 4.26 F
2467 2484 0.745845 CTATGTGGCAGTGGCTCACC 60.746 60.0 21.85 6.46 39.18 4.02 F
3769 3798 0.857935 GCTCAAGCGAGGATGAATCG 59.142 55.0 0.00 0.00 43.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1199 1201 0.619255 TTAATCAGGACCCGGGAGCA 60.619 55.0 32.02 6.12 0.00 4.26 R
2035 2051 0.750911 GCCCTTCCTCTGCATCCTTG 60.751 60.0 0.00 0.00 0.00 3.61 R
2832 2850 0.796927 GTAACGTCTCTTTGCCTGGC 59.203 55.0 12.87 12.87 0.00 4.85 R
3997 4026 0.107361 ATTGCTTGGCCGGTAGTACC 60.107 55.0 9.50 9.50 34.05 3.34 R
4007 4036 0.955428 TGGTCGAGTGATTGCTTGGC 60.955 55.0 0.00 0.00 0.00 4.52 R
5206 5551 0.249073 CACTAGGGGACGATGAAGCG 60.249 60.0 0.00 0.00 37.29 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 9.276590 TGAATAAACAATGGAGCATACTAGATG 57.723 33.333 0.00 0.00 0.00 2.90
61 62 4.336280 AGCATACTAGATGATACTCCGCA 58.664 43.478 0.00 0.00 0.00 5.69
62 63 4.952957 AGCATACTAGATGATACTCCGCAT 59.047 41.667 0.00 0.00 0.00 4.73
68 69 4.258702 AGATGATACTCCGCATGTTACC 57.741 45.455 0.00 0.00 0.00 2.85
71 72 0.249741 ATACTCCGCATGTTACCGCC 60.250 55.000 0.00 0.00 0.00 6.13
85 86 0.103208 ACCGCCGAAATTTGTTGCAA 59.897 45.000 0.00 0.00 0.00 4.08
170 171 8.700722 TGGATATTTTTGTTCACAACATATGC 57.299 30.769 1.58 11.84 41.79 3.14
171 172 8.309656 TGGATATTTTTGTTCACAACATATGCA 58.690 29.630 14.95 14.95 41.79 3.96
183 184 8.560355 TCACAACATATGCACATTTAGTTACT 57.440 30.769 1.58 0.00 0.00 2.24
238 239 5.885881 ACTAGTGCGAGAGAATGAAACTAG 58.114 41.667 0.00 0.00 0.00 2.57
248 249 7.593273 CGAGAGAATGAAACTAGTATGGATGAC 59.407 40.741 0.00 0.00 0.00 3.06
344 345 7.642071 CATACATGCAATTAATTGGTAAGGC 57.358 36.000 25.61 13.16 38.21 4.35
345 346 5.937975 ACATGCAATTAATTGGTAAGGCT 57.062 34.783 25.61 2.40 38.21 4.58
346 347 8.575589 CATACATGCAATTAATTGGTAAGGCTA 58.424 33.333 25.61 4.08 38.21 3.93
347 348 7.416964 ACATGCAATTAATTGGTAAGGCTAA 57.583 32.000 25.61 0.51 38.21 3.09
348 349 8.021898 ACATGCAATTAATTGGTAAGGCTAAT 57.978 30.769 25.61 2.60 38.21 1.73
349 350 8.485392 ACATGCAATTAATTGGTAAGGCTAATT 58.515 29.630 25.61 0.00 40.59 1.40
350 351 8.767085 CATGCAATTAATTGGTAAGGCTAATTG 58.233 33.333 25.61 9.61 38.47 2.32
351 352 7.271511 TGCAATTAATTGGTAAGGCTAATTGG 58.728 34.615 25.61 0.00 38.47 3.16
352 353 7.093112 TGCAATTAATTGGTAAGGCTAATTGGT 60.093 33.333 25.61 0.00 38.47 3.67
353 354 7.768582 GCAATTAATTGGTAAGGCTAATTGGTT 59.231 33.333 25.61 3.30 38.47 3.67
354 355 9.097257 CAATTAATTGGTAAGGCTAATTGGTTG 57.903 33.333 18.72 6.36 38.47 3.77
355 356 5.675684 AATTGGTAAGGCTAATTGGTTGG 57.324 39.130 0.00 0.00 36.98 3.77
356 357 2.452505 TGGTAAGGCTAATTGGTTGGC 58.547 47.619 0.00 0.00 40.71 4.52
357 358 2.042433 TGGTAAGGCTAATTGGTTGGCT 59.958 45.455 0.00 0.00 41.15 4.75
358 359 3.096852 GGTAAGGCTAATTGGTTGGCTT 58.903 45.455 12.89 12.89 46.00 4.35
359 360 3.119137 GGTAAGGCTAATTGGTTGGCTTG 60.119 47.826 15.87 0.00 44.39 4.01
360 361 2.603075 AGGCTAATTGGTTGGCTTGA 57.397 45.000 0.00 0.00 41.15 3.02
361 362 2.171003 AGGCTAATTGGTTGGCTTGAC 58.829 47.619 0.00 0.00 41.15 3.18
362 363 1.892474 GGCTAATTGGTTGGCTTGACA 59.108 47.619 0.00 0.00 41.15 3.58
363 364 2.298729 GGCTAATTGGTTGGCTTGACAA 59.701 45.455 0.00 0.00 41.15 3.18
364 365 3.055891 GGCTAATTGGTTGGCTTGACAAT 60.056 43.478 0.00 0.00 41.15 2.71
365 366 4.176271 GCTAATTGGTTGGCTTGACAATC 58.824 43.478 0.00 0.00 38.63 2.67
366 367 4.321899 GCTAATTGGTTGGCTTGACAATCA 60.322 41.667 0.00 0.00 39.54 2.57
367 368 3.947910 ATTGGTTGGCTTGACAATCAG 57.052 42.857 2.23 0.00 41.96 2.90
368 369 1.619654 TGGTTGGCTTGACAATCAGG 58.380 50.000 0.00 0.00 36.60 3.86
369 370 1.144708 TGGTTGGCTTGACAATCAGGA 59.855 47.619 0.00 0.00 36.60 3.86
370 371 2.225091 TGGTTGGCTTGACAATCAGGAT 60.225 45.455 0.00 0.00 36.60 3.24
371 372 2.165030 GGTTGGCTTGACAATCAGGATG 59.835 50.000 0.00 0.00 31.80 3.51
385 386 3.678289 TCAGGATGAGGTGACACATTTG 58.322 45.455 8.08 0.00 42.56 2.32
386 387 3.327464 TCAGGATGAGGTGACACATTTGA 59.673 43.478 8.08 0.00 42.56 2.69
387 388 4.074259 CAGGATGAGGTGACACATTTGAA 58.926 43.478 8.08 0.00 41.98 2.69
388 389 4.703575 CAGGATGAGGTGACACATTTGAAT 59.296 41.667 8.08 0.00 41.98 2.57
389 390 4.703575 AGGATGAGGTGACACATTTGAATG 59.296 41.667 8.08 2.29 41.98 2.67
390 391 7.743075 CAGGATGAGGTGACACATTTGAATGT 61.743 42.308 8.08 3.60 45.17 2.71
403 404 6.910536 CATTTGAATGTGTACTACTCCCTC 57.089 41.667 0.00 0.00 0.00 4.30
404 405 5.416271 TTTGAATGTGTACTACTCCCTCC 57.584 43.478 0.00 0.00 0.00 4.30
405 406 3.021695 TGAATGTGTACTACTCCCTCCG 58.978 50.000 0.00 0.00 0.00 4.63
406 407 2.822707 ATGTGTACTACTCCCTCCGT 57.177 50.000 0.00 0.00 0.00 4.69
407 408 3.939740 ATGTGTACTACTCCCTCCGTA 57.060 47.619 0.00 0.00 0.00 4.02
408 409 3.719268 TGTGTACTACTCCCTCCGTAA 57.281 47.619 0.00 0.00 0.00 3.18
409 410 4.032960 TGTGTACTACTCCCTCCGTAAA 57.967 45.455 0.00 0.00 0.00 2.01
410 411 3.758554 TGTGTACTACTCCCTCCGTAAAC 59.241 47.826 0.00 0.00 0.00 2.01
411 412 4.013050 GTGTACTACTCCCTCCGTAAACT 58.987 47.826 0.00 0.00 0.00 2.66
412 413 5.186198 GTGTACTACTCCCTCCGTAAACTA 58.814 45.833 0.00 0.00 0.00 2.24
413 414 5.648092 GTGTACTACTCCCTCCGTAAACTAA 59.352 44.000 0.00 0.00 0.00 2.24
414 415 6.319911 GTGTACTACTCCCTCCGTAAACTAAT 59.680 42.308 0.00 0.00 0.00 1.73
415 416 7.499232 GTGTACTACTCCCTCCGTAAACTAATA 59.501 40.741 0.00 0.00 0.00 0.98
416 417 8.220559 TGTACTACTCCCTCCGTAAACTAATAT 58.779 37.037 0.00 0.00 0.00 1.28
417 418 9.726438 GTACTACTCCCTCCGTAAACTAATATA 57.274 37.037 0.00 0.00 0.00 0.86
419 420 9.294614 ACTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
420 421 9.512588 CTACTCCCTCCGTAAACTAATATAAGA 57.487 37.037 0.00 0.00 0.00 2.10
421 422 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
422 423 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
423 424 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
424 425 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
425 426 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
426 427 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
427 428 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
428 429 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
429 430 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
443 444 9.570488 AAGAGCGTTTAGAATACTAAAGTAGTG 57.430 33.333 0.00 0.00 45.42 2.74
444 445 8.954350 AGAGCGTTTAGAATACTAAAGTAGTGA 58.046 33.333 0.00 0.00 45.42 3.41
445 446 9.733219 GAGCGTTTAGAATACTAAAGTAGTGAT 57.267 33.333 0.00 0.00 45.42 3.06
446 447 9.733219 AGCGTTTAGAATACTAAAGTAGTGATC 57.267 33.333 0.00 0.00 45.42 2.92
447 448 9.733219 GCGTTTAGAATACTAAAGTAGTGATCT 57.267 33.333 0.00 4.67 45.42 2.75
453 454 9.733219 AGAATACTAAAGTAGTGATCTAAACGC 57.267 33.333 0.00 0.00 39.81 4.84
454 455 9.733219 GAATACTAAAGTAGTGATCTAAACGCT 57.267 33.333 0.00 0.00 39.81 5.07
457 458 8.828688 ACTAAAGTAGTGATCTAAACGCTTTT 57.171 30.769 10.23 0.00 37.69 2.27
458 459 9.918630 ACTAAAGTAGTGATCTAAACGCTTTTA 57.081 29.630 10.23 0.00 37.69 1.52
475 476 8.658499 ACGCTTTTATATTAGTTTACAGAGGG 57.342 34.615 0.00 0.00 0.00 4.30
476 477 8.480501 ACGCTTTTATATTAGTTTACAGAGGGA 58.519 33.333 0.00 0.00 0.00 4.20
477 478 8.979574 CGCTTTTATATTAGTTTACAGAGGGAG 58.020 37.037 0.00 0.00 0.00 4.30
478 479 9.833917 GCTTTTATATTAGTTTACAGAGGGAGT 57.166 33.333 0.00 0.00 0.00 3.85
490 491 9.096160 GTTTACAGAGGGAGTAATAAACTAAGC 57.904 37.037 0.00 0.00 39.07 3.09
491 492 6.869206 ACAGAGGGAGTAATAAACTAAGCA 57.131 37.500 0.00 0.00 39.07 3.91
492 493 6.879400 ACAGAGGGAGTAATAAACTAAGCAG 58.121 40.000 0.00 0.00 39.07 4.24
493 494 6.440965 ACAGAGGGAGTAATAAACTAAGCAGT 59.559 38.462 0.00 0.00 39.07 4.40
494 495 6.758886 CAGAGGGAGTAATAAACTAAGCAGTG 59.241 42.308 0.00 0.00 39.07 3.66
495 496 6.668283 AGAGGGAGTAATAAACTAAGCAGTGA 59.332 38.462 0.00 0.00 39.07 3.41
496 497 7.180408 AGAGGGAGTAATAAACTAAGCAGTGAA 59.820 37.037 0.00 0.00 39.07 3.18
497 498 7.331791 AGGGAGTAATAAACTAAGCAGTGAAG 58.668 38.462 0.00 0.00 39.07 3.02
498 499 6.539103 GGGAGTAATAAACTAAGCAGTGAAGG 59.461 42.308 0.00 0.00 39.07 3.46
499 500 6.037281 GGAGTAATAAACTAAGCAGTGAAGGC 59.963 42.308 0.00 0.00 39.07 4.35
500 501 6.712276 AGTAATAAACTAAGCAGTGAAGGCT 58.288 36.000 0.00 0.00 45.15 4.58
501 502 7.848128 AGTAATAAACTAAGCAGTGAAGGCTA 58.152 34.615 0.00 0.00 41.66 3.93
502 503 8.319146 AGTAATAAACTAAGCAGTGAAGGCTAA 58.681 33.333 0.00 0.00 41.66 3.09
503 504 6.986904 ATAAACTAAGCAGTGAAGGCTAAC 57.013 37.500 0.00 0.00 41.66 2.34
504 505 4.625607 AACTAAGCAGTGAAGGCTAACT 57.374 40.909 0.00 0.00 41.66 2.24
505 506 4.625607 ACTAAGCAGTGAAGGCTAACTT 57.374 40.909 0.00 0.00 41.66 2.66
536 537 9.827411 GTTATGAAAAATTTGACACTCTAGACC 57.173 33.333 0.00 0.00 0.00 3.85
537 538 9.567776 TTATGAAAAATTTGACACTCTAGACCA 57.432 29.630 0.00 0.00 0.00 4.02
538 539 7.873719 TGAAAAATTTGACACTCTAGACCAA 57.126 32.000 0.00 0.00 0.00 3.67
539 540 8.463930 TGAAAAATTTGACACTCTAGACCAAT 57.536 30.769 0.00 0.00 0.00 3.16
540 541 9.567776 TGAAAAATTTGACACTCTAGACCAATA 57.432 29.630 0.00 0.00 0.00 1.90
541 542 9.827411 GAAAAATTTGACACTCTAGACCAATAC 57.173 33.333 0.00 0.00 0.00 1.89
542 543 8.918202 AAAATTTGACACTCTAGACCAATACA 57.082 30.769 0.00 0.00 0.00 2.29
543 544 9.520515 AAAATTTGACACTCTAGACCAATACAT 57.479 29.630 0.00 0.00 0.00 2.29
544 545 9.520515 AAATTTGACACTCTAGACCAATACATT 57.479 29.630 0.00 0.00 0.00 2.71
545 546 8.723942 ATTTGACACTCTAGACCAATACATTC 57.276 34.615 0.00 0.00 0.00 2.67
546 547 6.850752 TGACACTCTAGACCAATACATTCA 57.149 37.500 0.00 0.00 0.00 2.57
547 548 7.239763 TGACACTCTAGACCAATACATTCAA 57.760 36.000 0.00 0.00 0.00 2.69
548 549 7.676004 TGACACTCTAGACCAATACATTCAAA 58.324 34.615 0.00 0.00 0.00 2.69
549 550 8.154203 TGACACTCTAGACCAATACATTCAAAA 58.846 33.333 0.00 0.00 0.00 2.44
550 551 8.918202 ACACTCTAGACCAATACATTCAAAAA 57.082 30.769 0.00 0.00 0.00 1.94
551 552 9.520515 ACACTCTAGACCAATACATTCAAAAAT 57.479 29.630 0.00 0.00 0.00 1.82
552 553 9.778993 CACTCTAGACCAATACATTCAAAAATG 57.221 33.333 0.00 0.00 46.42 2.32
553 554 9.739276 ACTCTAGACCAATACATTCAAAAATGA 57.261 29.630 5.22 0.00 44.25 2.57
599 600 9.929722 TCTGTAATTACATATTGAAAATGTCGC 57.070 29.630 18.35 0.00 38.49 5.19
600 601 9.715123 CTGTAATTACATATTGAAAATGTCGCA 57.285 29.630 18.35 0.00 38.49 5.10
608 609 9.585099 ACATATTGAAAATGTCGCAATACAATT 57.415 25.926 0.00 0.00 37.33 2.32
609 610 9.838163 CATATTGAAAATGTCGCAATACAATTG 57.162 29.630 3.24 3.24 37.33 2.32
610 611 5.760193 TGAAAATGTCGCAATACAATTGC 57.240 34.783 13.35 13.35 41.71 3.56
611 612 5.225642 TGAAAATGTCGCAATACAATTGCA 58.774 33.333 20.90 8.45 45.14 4.08
612 613 5.868258 TGAAAATGTCGCAATACAATTGCAT 59.132 32.000 20.90 7.52 45.14 3.96
613 614 7.031975 TGAAAATGTCGCAATACAATTGCATA 58.968 30.769 20.90 8.49 45.14 3.14
614 615 7.543520 TGAAAATGTCGCAATACAATTGCATAA 59.456 29.630 20.90 8.43 45.14 1.90
615 616 8.422973 AAAATGTCGCAATACAATTGCATAAT 57.577 26.923 20.90 10.01 45.14 1.28
616 617 7.627585 AATGTCGCAATACAATTGCATAATC 57.372 32.000 20.90 8.94 45.14 1.75
617 618 6.129053 TGTCGCAATACAATTGCATAATCA 57.871 33.333 20.90 10.83 45.14 2.57
618 619 6.737118 TGTCGCAATACAATTGCATAATCAT 58.263 32.000 20.90 0.00 45.14 2.45
619 620 7.201835 TGTCGCAATACAATTGCATAATCATT 58.798 30.769 20.90 0.00 45.14 2.57
620 621 7.705752 TGTCGCAATACAATTGCATAATCATTT 59.294 29.630 20.90 0.00 45.14 2.32
621 622 8.542132 GTCGCAATACAATTGCATAATCATTTT 58.458 29.630 20.90 0.00 45.14 1.82
622 623 9.096160 TCGCAATACAATTGCATAATCATTTTT 57.904 25.926 20.90 0.00 45.14 1.94
623 624 9.360514 CGCAATACAATTGCATAATCATTTTTC 57.639 29.630 20.90 0.00 45.14 2.29
639 640 8.976986 ATCATTTTTCTTACTTCATTGACAGC 57.023 30.769 0.00 0.00 0.00 4.40
640 641 8.169977 TCATTTTTCTTACTTCATTGACAGCT 57.830 30.769 0.00 0.00 0.00 4.24
641 642 9.283768 TCATTTTTCTTACTTCATTGACAGCTA 57.716 29.630 0.00 0.00 0.00 3.32
642 643 9.897744 CATTTTTCTTACTTCATTGACAGCTAA 57.102 29.630 0.00 0.00 0.00 3.09
646 647 9.944376 TTTCTTACTTCATTGACAGCTAATACT 57.056 29.630 0.00 0.00 0.00 2.12
647 648 9.944376 TTCTTACTTCATTGACAGCTAATACTT 57.056 29.630 0.00 0.00 0.00 2.24
648 649 9.944376 TCTTACTTCATTGACAGCTAATACTTT 57.056 29.630 0.00 0.00 0.00 2.66
674 675 5.438761 ACTTCTGTGACAATAAAGTTGGC 57.561 39.130 2.86 0.00 0.00 4.52
675 676 4.887071 ACTTCTGTGACAATAAAGTTGGCA 59.113 37.500 2.86 0.00 34.56 4.92
676 677 5.359576 ACTTCTGTGACAATAAAGTTGGCAA 59.640 36.000 0.00 0.00 39.45 4.52
677 678 5.843673 TCTGTGACAATAAAGTTGGCAAA 57.156 34.783 0.00 0.00 39.45 3.68
678 679 5.830912 TCTGTGACAATAAAGTTGGCAAAG 58.169 37.500 0.00 7.36 42.79 2.77
679 680 5.359576 TCTGTGACAATAAAGTTGGCAAAGT 59.640 36.000 12.27 0.00 42.21 2.66
680 681 5.347342 TGTGACAATAAAGTTGGCAAAGTG 58.653 37.500 0.00 0.00 39.45 3.16
681 682 5.126222 TGTGACAATAAAGTTGGCAAAGTGA 59.874 36.000 0.00 0.00 39.45 3.41
682 683 6.183360 TGTGACAATAAAGTTGGCAAAGTGAT 60.183 34.615 0.00 0.00 39.45 3.06
683 684 7.013750 TGTGACAATAAAGTTGGCAAAGTGATA 59.986 33.333 0.00 0.00 39.45 2.15
684 685 8.028938 GTGACAATAAAGTTGGCAAAGTGATAT 58.971 33.333 0.00 0.00 39.45 1.63
685 686 8.028354 TGACAATAAAGTTGGCAAAGTGATATG 58.972 33.333 0.00 0.00 33.91 1.78
686 687 8.121305 ACAATAAAGTTGGCAAAGTGATATGA 57.879 30.769 0.00 0.00 0.00 2.15
687 688 8.752187 ACAATAAAGTTGGCAAAGTGATATGAT 58.248 29.630 0.00 0.00 0.00 2.45
688 689 9.241317 CAATAAAGTTGGCAAAGTGATATGATC 57.759 33.333 0.00 0.00 0.00 2.92
689 690 8.757982 ATAAAGTTGGCAAAGTGATATGATCT 57.242 30.769 0.00 0.00 0.00 2.75
690 691 9.851686 ATAAAGTTGGCAAAGTGATATGATCTA 57.148 29.630 0.00 0.00 0.00 1.98
691 692 7.798596 AAGTTGGCAAAGTGATATGATCTAG 57.201 36.000 0.00 0.00 0.00 2.43
692 693 6.893583 AGTTGGCAAAGTGATATGATCTAGT 58.106 36.000 0.00 0.00 0.00 2.57
698 699 6.865726 GCAAAGTGATATGATCTAGTGACGAT 59.134 38.462 0.00 0.00 0.00 3.73
727 728 0.602638 TTCAATGCGGAGTCGTGCTT 60.603 50.000 7.41 0.00 38.89 3.91
728 729 1.133253 CAATGCGGAGTCGTGCTTG 59.867 57.895 7.41 5.93 38.89 4.01
732 733 2.030562 CGGAGTCGTGCTTGGGTT 59.969 61.111 0.00 0.00 0.00 4.11
739 740 2.903547 CGTGCTTGGGTTGGGTTCG 61.904 63.158 0.00 0.00 0.00 3.95
748 749 4.595538 TTGGGTTCGTGTCGCGCT 62.596 61.111 5.56 0.00 41.07 5.92
749 750 4.595538 TGGGTTCGTGTCGCGCTT 62.596 61.111 5.56 0.00 41.07 4.68
751 752 4.072088 GGTTCGTGTCGCGCTTGG 62.072 66.667 5.56 0.00 41.07 3.61
756 757 2.049063 GTGTCGCGCTTGGTCTCT 60.049 61.111 5.56 0.00 0.00 3.10
759 760 1.803519 GTCGCGCTTGGTCTCTCTG 60.804 63.158 5.56 0.00 0.00 3.35
766 767 3.282745 TTGGTCTCTCTGTCGGCGC 62.283 63.158 0.00 0.00 0.00 6.53
767 768 4.838486 GGTCTCTCTGTCGGCGCG 62.838 72.222 0.00 0.00 0.00 6.86
781 782 3.479269 CGCGAACCGACTGAAGCC 61.479 66.667 0.00 0.00 40.02 4.35
783 784 2.383527 GCGAACCGACTGAAGCCAG 61.384 63.158 0.00 0.00 45.76 4.85
785 786 2.032681 AACCGACTGAAGCCAGGC 59.967 61.111 1.84 1.84 45.10 4.85
789 790 4.400961 GACTGAAGCCAGGCGCCT 62.401 66.667 27.08 27.08 44.60 5.52
790 791 4.400961 ACTGAAGCCAGGCGCCTC 62.401 66.667 30.29 17.64 44.60 4.70
814 815 1.298667 GTGGATGGCCCGTAGTGTT 59.701 57.895 0.00 0.00 37.93 3.32
846 847 2.300967 CCCAGTAGAAGCCCAGCCA 61.301 63.158 0.00 0.00 0.00 4.75
847 848 1.078143 CCAGTAGAAGCCCAGCCAC 60.078 63.158 0.00 0.00 0.00 5.01
936 938 3.726517 CCGCACCGGCACTTCTTG 61.727 66.667 0.00 0.00 41.17 3.02
960 962 3.395669 CGAAATCGTCGGCCCTTC 58.604 61.111 0.00 0.00 46.45 3.46
1209 1211 3.322466 CTGGAACTGCTCCCGGGT 61.322 66.667 22.86 0.00 44.69 5.28
1210 1212 3.316573 CTGGAACTGCTCCCGGGTC 62.317 68.421 22.86 14.46 44.69 4.46
1211 1213 4.097361 GGAACTGCTCCCGGGTCC 62.097 72.222 22.86 15.53 46.51 4.46
1212 1214 3.003763 GAACTGCTCCCGGGTCCT 61.004 66.667 22.86 0.00 0.00 3.85
1213 1215 3.316573 GAACTGCTCCCGGGTCCTG 62.317 68.421 22.86 17.84 0.00 3.86
1219 1221 0.765510 GCTCCCGGGTCCTGATTAAT 59.234 55.000 22.86 0.00 0.00 1.40
1227 1229 4.056050 CGGGTCCTGATTAATTAGTTCCG 58.944 47.826 14.08 14.08 0.00 4.30
1262 1265 4.200447 TCTTAGGGGTCCTAGGATTCTG 57.800 50.000 16.27 2.54 37.31 3.02
1277 1281 0.976073 TTCTGGACTTCTAGGGGGCG 60.976 60.000 0.00 0.00 0.00 6.13
1304 1308 1.310933 TTCGTCGAGGCAGGGAGTAC 61.311 60.000 0.00 0.00 0.00 2.73
1315 1319 0.752376 AGGGAGTACGGAGCTAGTGC 60.752 60.000 4.72 3.52 40.05 4.40
1380 1384 3.355378 TGCCTGTTTGTGATGGGATTAG 58.645 45.455 0.00 0.00 0.00 1.73
1388 1392 2.154462 GTGATGGGATTAGGGCATTCG 58.846 52.381 0.00 0.00 0.00 3.34
1426 1434 7.555914 TGGATTATTAGCTGATAGTTGCAACAA 59.444 33.333 30.11 13.96 0.00 2.83
1464 1472 4.906618 TGTTCTATTTTGGGAGGTGAGAC 58.093 43.478 0.00 0.00 0.00 3.36
1465 1473 4.597507 TGTTCTATTTTGGGAGGTGAGACT 59.402 41.667 0.00 0.00 0.00 3.24
1471 1479 4.301072 TTTGGGAGGTGAGACTAATTGG 57.699 45.455 0.00 0.00 0.00 3.16
1472 1480 2.915869 TGGGAGGTGAGACTAATTGGT 58.084 47.619 0.00 0.00 0.00 3.67
1473 1481 4.069312 TGGGAGGTGAGACTAATTGGTA 57.931 45.455 0.00 0.00 0.00 3.25
1478 1486 5.407407 AGGTGAGACTAATTGGTAGTGTG 57.593 43.478 0.00 0.00 43.45 3.82
1479 1487 5.084519 AGGTGAGACTAATTGGTAGTGTGA 58.915 41.667 0.00 0.00 43.45 3.58
1497 1505 7.581213 AGTGTGATGGTTTGATTACAAGAAA 57.419 32.000 0.00 0.00 37.32 2.52
1509 1517 1.594331 ACAAGAAACGGTGCTCCTTC 58.406 50.000 2.85 1.14 0.00 3.46
1554 1563 4.641989 AGTGCACTTTGTCCATGGATATTC 59.358 41.667 19.62 5.32 0.00 1.75
1562 1571 2.107204 GTCCATGGATATTCCTGCAGGT 59.893 50.000 31.58 16.78 37.46 4.00
1567 1576 2.301346 GGATATTCCTGCAGGTGTTGG 58.699 52.381 31.58 6.88 36.34 3.77
1577 1586 1.740025 GCAGGTGTTGGATTAGCTCAC 59.260 52.381 0.00 0.00 0.00 3.51
1579 1588 3.679389 CAGGTGTTGGATTAGCTCACTT 58.321 45.455 0.00 0.00 0.00 3.16
1580 1589 4.074970 CAGGTGTTGGATTAGCTCACTTT 58.925 43.478 0.00 0.00 0.00 2.66
1581 1590 4.074970 AGGTGTTGGATTAGCTCACTTTG 58.925 43.478 0.00 0.00 0.00 2.77
1582 1591 3.821033 GGTGTTGGATTAGCTCACTTTGT 59.179 43.478 0.00 0.00 0.00 2.83
1583 1592 4.083271 GGTGTTGGATTAGCTCACTTTGTC 60.083 45.833 0.00 0.00 0.00 3.18
1584 1593 4.072131 TGTTGGATTAGCTCACTTTGTCC 58.928 43.478 0.00 0.00 0.00 4.02
1585 1594 4.072131 GTTGGATTAGCTCACTTTGTCCA 58.928 43.478 0.00 0.00 31.53 4.02
1586 1595 4.574674 TGGATTAGCTCACTTTGTCCAT 57.425 40.909 0.00 0.00 29.64 3.41
1587 1596 4.264253 TGGATTAGCTCACTTTGTCCATG 58.736 43.478 0.00 0.00 29.64 3.66
1588 1597 3.629398 GGATTAGCTCACTTTGTCCATGG 59.371 47.826 4.97 4.97 0.00 3.66
1589 1598 4.517285 GATTAGCTCACTTTGTCCATGGA 58.483 43.478 11.44 11.44 0.00 3.41
1590 1599 4.574674 TTAGCTCACTTTGTCCATGGAT 57.425 40.909 19.62 0.00 0.00 3.41
1591 1600 5.692115 TTAGCTCACTTTGTCCATGGATA 57.308 39.130 19.62 13.36 0.00 2.59
1592 1601 4.785346 AGCTCACTTTGTCCATGGATAT 57.215 40.909 19.62 0.00 0.00 1.63
1593 1602 5.121380 AGCTCACTTTGTCCATGGATATT 57.879 39.130 19.62 0.00 0.00 1.28
1594 1603 5.128919 AGCTCACTTTGTCCATGGATATTC 58.871 41.667 19.62 5.32 0.00 1.75
1595 1604 4.276926 GCTCACTTTGTCCATGGATATTCC 59.723 45.833 19.62 4.90 36.96 3.01
1596 1605 5.688807 CTCACTTTGTCCATGGATATTCCT 58.311 41.667 19.62 0.00 37.46 3.36
1597 1606 6.688922 GCTCACTTTGTCCATGGATATTCCTA 60.689 42.308 19.62 0.00 37.46 2.94
1598 1607 6.591935 TCACTTTGTCCATGGATATTCCTAC 58.408 40.000 19.62 3.11 37.46 3.18
1599 1608 6.157820 TCACTTTGTCCATGGATATTCCTACA 59.842 38.462 19.62 6.10 37.46 2.74
1600 1609 6.484643 CACTTTGTCCATGGATATTCCTACAG 59.515 42.308 19.62 6.66 37.46 2.74
1601 1610 5.567037 TTGTCCATGGATATTCCTACAGG 57.433 43.478 19.62 0.00 37.46 4.00
1602 1611 3.909995 TGTCCATGGATATTCCTACAGGG 59.090 47.826 19.62 0.00 37.46 4.45
1603 1612 3.264450 GTCCATGGATATTCCTACAGGGG 59.736 52.174 19.62 0.00 37.46 4.79
1604 1613 3.115962 TCCATGGATATTCCTACAGGGGT 60.116 47.826 11.44 0.00 37.46 4.95
1605 1614 3.657727 CCATGGATATTCCTACAGGGGTT 59.342 47.826 5.56 0.00 37.46 4.11
1606 1615 4.507335 CCATGGATATTCCTACAGGGGTTG 60.507 50.000 5.56 0.00 37.46 3.77
1607 1616 3.053077 TGGATATTCCTACAGGGGTTGG 58.947 50.000 0.00 0.00 40.73 3.77
1608 1617 3.311778 TGGATATTCCTACAGGGGTTGGA 60.312 47.826 0.00 0.00 45.34 3.53
1609 1618 3.916989 GGATATTCCTACAGGGGTTGGAT 59.083 47.826 0.00 0.00 46.07 3.41
1610 1619 4.354087 GGATATTCCTACAGGGGTTGGATT 59.646 45.833 0.00 0.00 46.07 3.01
1611 1620 5.550403 GGATATTCCTACAGGGGTTGGATTA 59.450 44.000 0.00 1.75 46.07 1.75
1612 1621 6.296489 GGATATTCCTACAGGGGTTGGATTAG 60.296 46.154 0.00 0.00 46.07 1.73
1613 1622 2.124411 TCCTACAGGGGTTGGATTAGC 58.876 52.381 0.00 0.00 42.77 3.09
1614 1623 2.127708 CCTACAGGGGTTGGATTAGCT 58.872 52.381 0.00 0.00 41.75 3.32
1615 1624 2.104963 CCTACAGGGGTTGGATTAGCTC 59.895 54.545 0.00 0.00 41.75 4.09
1616 1625 1.668826 ACAGGGGTTGGATTAGCTCA 58.331 50.000 0.00 0.00 0.00 4.26
1617 1626 2.208872 ACAGGGGTTGGATTAGCTCAT 58.791 47.619 0.00 0.00 0.00 2.90
1732 1744 4.119862 GCGGTATTGAGAGCATGAGTTTA 58.880 43.478 0.00 0.00 0.00 2.01
1733 1745 4.025647 GCGGTATTGAGAGCATGAGTTTAC 60.026 45.833 0.00 0.00 0.00 2.01
1767 1779 8.454106 TGCATCTTAGCTTATTTCTTTCAACTC 58.546 33.333 0.00 0.00 34.99 3.01
1862 1877 4.556942 TTTTGCTCATTCCTGATATGCG 57.443 40.909 0.00 0.00 0.00 4.73
1910 1925 7.448469 TCTTAAAGACCCTTGGAGAAAATTCTG 59.552 37.037 0.00 0.00 37.73 3.02
1937 1952 4.871822 CCTTTTGGGGAGATATTTCAGGT 58.128 43.478 0.00 0.00 35.46 4.00
1938 1953 4.889995 CCTTTTGGGGAGATATTTCAGGTC 59.110 45.833 0.00 0.00 35.46 3.85
1939 1954 5.509498 CTTTTGGGGAGATATTTCAGGTCA 58.491 41.667 0.00 0.00 0.00 4.02
1991 2007 9.257651 GCACTTGTACTATATCCGAGTTAAATT 57.742 33.333 0.00 0.00 0.00 1.82
2035 2051 1.646189 GGGAACTTCTGTCTGCGATC 58.354 55.000 0.00 0.00 0.00 3.69
2126 2142 2.625737 CAAATCAGGAGTCAGCATCGT 58.374 47.619 0.00 0.00 0.00 3.73
2139 2155 4.627467 GTCAGCATCGTTATCAACTGAAGT 59.373 41.667 0.00 0.00 36.05 3.01
2161 2177 2.803451 GCTATCGAGCCATTAGATCCG 58.197 52.381 0.00 0.00 43.49 4.18
2162 2178 2.480416 GCTATCGAGCCATTAGATCCGG 60.480 54.545 0.00 0.00 43.49 5.14
2351 2367 6.047870 GTGAGTCATGCAACTTGATCTATCT 58.952 40.000 0.00 0.00 0.00 1.98
2461 2478 2.779755 TGGTAACTATGTGGCAGTGG 57.220 50.000 0.00 0.00 37.61 4.00
2462 2479 1.339631 TGGTAACTATGTGGCAGTGGC 60.340 52.381 10.30 10.30 36.93 5.01
2463 2480 1.065418 GGTAACTATGTGGCAGTGGCT 60.065 52.381 18.53 0.00 40.87 4.75
2465 2482 0.692476 AACTATGTGGCAGTGGCTCA 59.308 50.000 21.69 21.69 40.87 4.26
2467 2484 0.745845 CTATGTGGCAGTGGCTCACC 60.746 60.000 21.85 6.46 39.18 4.02
2468 2485 1.487850 TATGTGGCAGTGGCTCACCA 61.488 55.000 21.85 11.30 46.51 4.17
2616 2634 3.369147 CCTTTGACTATTGCGTGACTGAG 59.631 47.826 0.00 0.00 0.00 3.35
2621 2639 3.731136 TTGCGTGACTGAGCAACC 58.269 55.556 0.00 0.00 46.83 3.77
2705 2723 8.519799 TGAATTTTAAACTCAACAGAAGTCCT 57.480 30.769 0.00 0.00 0.00 3.85
2810 2828 5.211078 TGATTTCCAAATCCCATCTCCTT 57.789 39.130 9.12 0.00 43.19 3.36
2811 2829 5.203528 TGATTTCCAAATCCCATCTCCTTC 58.796 41.667 9.12 0.00 43.19 3.46
2832 2850 6.968904 CCTTCGGAACTATTGATGAATTGTTG 59.031 38.462 9.17 0.00 37.56 3.33
2917 2940 7.067496 ACTCATTATAACCCATCTGTTCGAT 57.933 36.000 0.00 0.00 0.00 3.59
2988 3011 1.537889 ATCCCACTCCCACGGACAA 60.538 57.895 0.00 0.00 0.00 3.18
3025 3049 3.895041 CAAAGCAGAAAACCCCCTCTTAA 59.105 43.478 0.00 0.00 0.00 1.85
3035 3059 2.576648 ACCCCCTCTTAAAGCAGGTTAG 59.423 50.000 0.00 0.00 0.00 2.34
3036 3060 2.092375 CCCCCTCTTAAAGCAGGTTAGG 60.092 54.545 0.00 0.00 0.00 2.69
3087 3113 2.490903 CAGCCATAACTTTCTGCTGCTT 59.509 45.455 0.00 0.00 42.40 3.91
3088 3114 3.691118 CAGCCATAACTTTCTGCTGCTTA 59.309 43.478 0.00 0.00 42.40 3.09
3277 3306 1.546029 GGATTGAACCCTTTGGACTGC 59.454 52.381 0.00 0.00 34.81 4.40
3415 3444 3.873801 GCTTCTCCCTGTTTTCCTATGCA 60.874 47.826 0.00 0.00 0.00 3.96
3421 3450 5.192927 TCCCTGTTTTCCTATGCATTACTG 58.807 41.667 3.54 0.00 0.00 2.74
3556 3585 4.253540 AACTGCATGGCGACAGTCCTTA 62.254 50.000 0.00 0.00 46.17 2.69
3691 3720 2.203195 AGCACTGCAACGCTTCCA 60.203 55.556 3.30 0.00 33.81 3.53
3769 3798 0.857935 GCTCAAGCGAGGATGAATCG 59.142 55.000 0.00 0.00 43.00 3.34
3786 3815 6.280855 TGAATCGGAGTTAAGTGAAGATGA 57.719 37.500 0.00 0.00 0.00 2.92
3862 3891 4.885325 ACAAATTTAACCGGTGTTCAGTCT 59.115 37.500 8.52 0.00 35.87 3.24
3928 3957 2.612471 CGCCTCCAAAATGATGGCAAAA 60.612 45.455 0.00 0.00 43.38 2.44
3934 3963 4.080687 CCAAAATGATGGCAAAAATGGGT 58.919 39.130 0.00 0.00 32.78 4.51
3937 3966 6.349197 CCAAAATGATGGCAAAAATGGGTTAC 60.349 38.462 0.00 0.00 32.78 2.50
3940 3969 0.969894 TGGCAAAAATGGGTTACCGG 59.030 50.000 0.00 0.00 40.75 5.28
3964 3993 3.480133 ATGGGGCTAGGCGTGTCC 61.480 66.667 10.58 6.29 0.00 4.02
3997 4026 2.831333 CTCGATCCAATCCCAGTCAAG 58.169 52.381 0.00 0.00 0.00 3.02
4007 4036 0.822164 CCCAGTCAAGGTACTACCGG 59.178 60.000 0.00 0.00 44.90 5.28
4066 4095 2.586357 GAGGACGGCCGAAGCATC 60.586 66.667 35.90 22.57 42.56 3.91
4075 4104 2.480555 CGAAGCATCCACCGCAAC 59.519 61.111 0.00 0.00 0.00 4.17
4090 4119 1.268032 CGCAACAAAGACAAGAAGCGT 60.268 47.619 0.00 0.00 39.18 5.07
4129 4158 2.892334 GCGCGACAGGAAGTTTGCA 61.892 57.895 12.10 0.00 33.12 4.08
4255 4284 2.788191 AAGCCAGGAAAGAGTCGCCG 62.788 60.000 0.00 0.00 0.00 6.46
4543 4572 4.046998 GCGACGTCTGTGTGTGCG 62.047 66.667 14.70 0.00 0.00 5.34
4560 4589 2.892334 CGCAGTCGGTGGGTGTTTG 61.892 63.158 0.00 0.00 34.37 2.93
4582 4611 2.839486 TGGAGCTCTGTTGTAGTTGG 57.161 50.000 14.64 0.00 0.00 3.77
4583 4612 1.270839 TGGAGCTCTGTTGTAGTTGGC 60.271 52.381 14.64 0.00 0.00 4.52
4584 4613 1.002544 GGAGCTCTGTTGTAGTTGGCT 59.997 52.381 14.64 0.00 33.38 4.75
4585 4614 2.072298 GAGCTCTGTTGTAGTTGGCTG 58.928 52.381 6.43 0.00 31.90 4.85
4586 4615 1.160137 GCTCTGTTGTAGTTGGCTGG 58.840 55.000 0.00 0.00 0.00 4.85
4587 4616 1.270839 GCTCTGTTGTAGTTGGCTGGA 60.271 52.381 0.00 0.00 0.00 3.86
4588 4617 2.616510 GCTCTGTTGTAGTTGGCTGGAT 60.617 50.000 0.00 0.00 0.00 3.41
4589 4618 3.005554 CTCTGTTGTAGTTGGCTGGATG 58.994 50.000 0.00 0.00 0.00 3.51
4590 4619 2.371841 TCTGTTGTAGTTGGCTGGATGT 59.628 45.455 0.00 0.00 0.00 3.06
4591 4620 2.485426 CTGTTGTAGTTGGCTGGATGTG 59.515 50.000 0.00 0.00 0.00 3.21
4592 4621 2.105649 TGTTGTAGTTGGCTGGATGTGA 59.894 45.455 0.00 0.00 0.00 3.58
4593 4622 3.244875 TGTTGTAGTTGGCTGGATGTGAT 60.245 43.478 0.00 0.00 0.00 3.06
4594 4623 4.019771 TGTTGTAGTTGGCTGGATGTGATA 60.020 41.667 0.00 0.00 0.00 2.15
4595 4624 5.126067 GTTGTAGTTGGCTGGATGTGATAT 58.874 41.667 0.00 0.00 0.00 1.63
4596 4625 4.960938 TGTAGTTGGCTGGATGTGATATC 58.039 43.478 0.00 0.00 0.00 1.63
4597 4626 3.498774 AGTTGGCTGGATGTGATATCC 57.501 47.619 0.70 0.70 38.66 2.59
4598 4627 2.779430 AGTTGGCTGGATGTGATATCCA 59.221 45.455 10.60 10.60 45.24 3.41
4599 4628 3.202818 AGTTGGCTGGATGTGATATCCAA 59.797 43.478 12.12 0.00 46.50 3.53
4600 4629 4.141088 AGTTGGCTGGATGTGATATCCAAT 60.141 41.667 12.12 0.00 46.50 3.16
4601 4630 4.458256 TGGCTGGATGTGATATCCAATT 57.542 40.909 12.12 0.00 46.50 2.32
4602 4631 4.806892 TGGCTGGATGTGATATCCAATTT 58.193 39.130 12.12 0.00 46.50 1.82
4603 4632 5.951204 TGGCTGGATGTGATATCCAATTTA 58.049 37.500 12.12 0.00 46.50 1.40
4604 4633 6.005823 TGGCTGGATGTGATATCCAATTTAG 58.994 40.000 12.12 1.67 46.50 1.85
4605 4634 6.183361 TGGCTGGATGTGATATCCAATTTAGA 60.183 38.462 12.12 0.00 46.50 2.10
4606 4635 6.373774 GGCTGGATGTGATATCCAATTTAGAG 59.626 42.308 12.12 0.31 46.50 2.43
4607 4636 6.373774 GCTGGATGTGATATCCAATTTAGAGG 59.626 42.308 12.12 0.00 46.50 3.69
4608 4637 6.782986 TGGATGTGATATCCAATTTAGAGGG 58.217 40.000 8.57 0.00 44.54 4.30
4609 4638 6.183347 GGATGTGATATCCAATTTAGAGGGG 58.817 44.000 3.09 0.00 38.09 4.79
4610 4639 6.240292 GGATGTGATATCCAATTTAGAGGGGT 60.240 42.308 3.09 0.00 38.09 4.95
4611 4640 6.590656 TGTGATATCCAATTTAGAGGGGTT 57.409 37.500 0.00 0.00 0.00 4.11
4612 4641 6.980577 TGTGATATCCAATTTAGAGGGGTTT 58.019 36.000 0.00 0.00 0.00 3.27
4613 4642 7.418378 TGTGATATCCAATTTAGAGGGGTTTT 58.582 34.615 0.00 0.00 0.00 2.43
4614 4643 7.559897 TGTGATATCCAATTTAGAGGGGTTTTC 59.440 37.037 0.00 0.00 0.00 2.29
4615 4644 6.770785 TGATATCCAATTTAGAGGGGTTTTCG 59.229 38.462 0.00 0.00 0.00 3.46
4616 4645 4.376225 TCCAATTTAGAGGGGTTTTCGT 57.624 40.909 0.00 0.00 0.00 3.85
4617 4646 5.502089 TCCAATTTAGAGGGGTTTTCGTA 57.498 39.130 0.00 0.00 0.00 3.43
4618 4647 6.069705 TCCAATTTAGAGGGGTTTTCGTAT 57.930 37.500 0.00 0.00 0.00 3.06
4619 4648 5.883673 TCCAATTTAGAGGGGTTTTCGTATG 59.116 40.000 0.00 0.00 0.00 2.39
4620 4649 5.883673 CCAATTTAGAGGGGTTTTCGTATGA 59.116 40.000 0.00 0.00 0.00 2.15
4682 4748 6.853377 CTGAACTACTCCAGATATGGCACAAA 60.853 42.308 0.00 0.00 35.35 2.83
4710 4781 7.101700 GTCTTGTCATATGCATATCTGATGGA 58.898 38.462 16.46 7.11 0.00 3.41
4717 4788 4.921644 TGCATATCTGATGGATGGATGT 57.078 40.909 0.00 0.00 35.98 3.06
4741 4812 3.889815 TGCTTGGTATATTCTGCTGCTT 58.110 40.909 0.00 0.00 0.00 3.91
5223 5568 1.364171 CCGCTTCATCGTCCCCTAG 59.636 63.158 0.00 0.00 0.00 3.02
5373 5719 0.533032 CTTCGGTCCTGTCCCTCTTC 59.467 60.000 0.00 0.00 0.00 2.87
5384 5730 2.003301 GTCCCTCTTCGCAGACATTTC 58.997 52.381 0.00 0.00 34.32 2.17
5396 6149 0.096454 GACATTTCGCCGTGGTAAGC 59.904 55.000 0.00 0.00 0.00 3.09
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.396478 TGCGGAGTATCATCTAGTATGCTC 59.604 45.833 10.05 10.05 36.25 4.26
40 41 4.703645 TGCGGAGTATCATCTAGTATGC 57.296 45.455 0.00 0.00 36.25 3.14
51 52 1.137513 GCGGTAACATGCGGAGTATC 58.862 55.000 0.00 0.00 0.00 2.24
61 62 3.570559 CAACAAATTTCGGCGGTAACAT 58.429 40.909 7.21 0.00 0.00 2.71
62 63 2.859032 GCAACAAATTTCGGCGGTAACA 60.859 45.455 7.21 0.00 0.00 2.41
68 69 6.198029 TGAATATATTGCAACAAATTTCGGCG 59.802 34.615 0.00 0.00 0.00 6.46
145 146 8.309656 TGCATATGTTGTGAACAAAAATATCCA 58.690 29.630 4.29 0.00 45.86 3.41
148 149 9.656040 ATGTGCATATGTTGTGAACAAAAATAT 57.344 25.926 4.29 2.85 45.86 1.28
152 153 7.783090 AAATGTGCATATGTTGTGAACAAAA 57.217 28.000 4.29 0.00 45.86 2.44
170 171 8.842358 TCCCTTTCAACTAGTAACTAAATGTG 57.158 34.615 0.00 0.00 0.00 3.21
171 172 8.657712 ACTCCCTTTCAACTAGTAACTAAATGT 58.342 33.333 0.00 0.00 0.00 2.71
213 214 3.784701 TTCATTCTCTCGCACTAGTCC 57.215 47.619 0.00 0.00 0.00 3.85
238 239 6.127026 ACTCCCTTTCAACTAGTCATCCATAC 60.127 42.308 0.00 0.00 0.00 2.39
248 249 6.709018 TTTTTCCAACTCCCTTTCAACTAG 57.291 37.500 0.00 0.00 0.00 2.57
282 283 4.501198 GCTAGTTTCATTCTCTCGCACTAC 59.499 45.833 0.00 0.00 0.00 2.73
288 289 4.686972 TCCATGCTAGTTTCATTCTCTCG 58.313 43.478 0.00 0.00 0.00 4.04
337 338 2.735151 AGCCAACCAATTAGCCTTACC 58.265 47.619 0.00 0.00 0.00 2.85
338 339 3.761752 TCAAGCCAACCAATTAGCCTTAC 59.238 43.478 0.00 0.00 0.00 2.34
339 340 3.761752 GTCAAGCCAACCAATTAGCCTTA 59.238 43.478 0.00 0.00 0.00 2.69
340 341 2.562738 GTCAAGCCAACCAATTAGCCTT 59.437 45.455 0.00 0.00 0.00 4.35
341 342 2.171003 GTCAAGCCAACCAATTAGCCT 58.829 47.619 0.00 0.00 0.00 4.58
342 343 1.892474 TGTCAAGCCAACCAATTAGCC 59.108 47.619 0.00 0.00 0.00 3.93
343 344 3.658757 TTGTCAAGCCAACCAATTAGC 57.341 42.857 0.00 0.00 0.00 3.09
344 345 5.389859 TGATTGTCAAGCCAACCAATTAG 57.610 39.130 0.00 0.00 0.00 1.73
345 346 4.220382 CCTGATTGTCAAGCCAACCAATTA 59.780 41.667 0.00 0.00 0.00 1.40
346 347 3.007182 CCTGATTGTCAAGCCAACCAATT 59.993 43.478 0.00 0.00 0.00 2.32
347 348 2.564062 CCTGATTGTCAAGCCAACCAAT 59.436 45.455 0.00 0.00 0.00 3.16
348 349 1.962807 CCTGATTGTCAAGCCAACCAA 59.037 47.619 0.00 0.00 0.00 3.67
349 350 1.144708 TCCTGATTGTCAAGCCAACCA 59.855 47.619 0.00 0.00 0.00 3.67
350 351 1.909700 TCCTGATTGTCAAGCCAACC 58.090 50.000 0.00 0.00 0.00 3.77
351 352 3.084039 TCATCCTGATTGTCAAGCCAAC 58.916 45.455 0.00 0.00 0.00 3.77
352 353 3.349927 CTCATCCTGATTGTCAAGCCAA 58.650 45.455 0.00 0.00 0.00 4.52
353 354 2.356432 CCTCATCCTGATTGTCAAGCCA 60.356 50.000 0.00 0.00 0.00 4.75
354 355 2.295885 CCTCATCCTGATTGTCAAGCC 58.704 52.381 0.00 0.00 0.00 4.35
355 356 2.681848 CACCTCATCCTGATTGTCAAGC 59.318 50.000 0.00 0.00 0.00 4.01
356 357 3.937706 GTCACCTCATCCTGATTGTCAAG 59.062 47.826 0.00 0.00 0.00 3.02
357 358 3.327464 TGTCACCTCATCCTGATTGTCAA 59.673 43.478 0.00 0.00 0.00 3.18
358 359 2.905736 TGTCACCTCATCCTGATTGTCA 59.094 45.455 0.00 0.00 0.00 3.58
359 360 3.265791 GTGTCACCTCATCCTGATTGTC 58.734 50.000 0.00 0.00 0.00 3.18
360 361 2.639347 TGTGTCACCTCATCCTGATTGT 59.361 45.455 0.00 0.00 0.00 2.71
361 362 3.339253 TGTGTCACCTCATCCTGATTG 57.661 47.619 0.00 0.00 0.00 2.67
362 363 4.581309 AATGTGTCACCTCATCCTGATT 57.419 40.909 0.00 0.00 0.00 2.57
363 364 4.019051 TCAAATGTGTCACCTCATCCTGAT 60.019 41.667 0.00 0.00 0.00 2.90
364 365 3.327464 TCAAATGTGTCACCTCATCCTGA 59.673 43.478 0.00 0.00 0.00 3.86
365 366 3.678289 TCAAATGTGTCACCTCATCCTG 58.322 45.455 0.00 0.00 0.00 3.86
366 367 4.371624 TTCAAATGTGTCACCTCATCCT 57.628 40.909 0.00 0.00 0.00 3.24
367 368 4.990257 CATTCAAATGTGTCACCTCATCC 58.010 43.478 0.00 0.00 0.00 3.51
380 381 5.817816 GGAGGGAGTAGTACACATTCAAATG 59.182 44.000 2.52 1.20 42.10 2.32
381 382 5.395324 CGGAGGGAGTAGTACACATTCAAAT 60.395 44.000 2.52 0.00 0.00 2.32
382 383 4.081862 CGGAGGGAGTAGTACACATTCAAA 60.082 45.833 2.52 0.00 0.00 2.69
383 384 3.446161 CGGAGGGAGTAGTACACATTCAA 59.554 47.826 2.52 0.00 0.00 2.69
384 385 3.021695 CGGAGGGAGTAGTACACATTCA 58.978 50.000 2.52 0.00 0.00 2.57
385 386 3.022406 ACGGAGGGAGTAGTACACATTC 58.978 50.000 2.52 0.00 0.00 2.67
386 387 3.097342 ACGGAGGGAGTAGTACACATT 57.903 47.619 2.52 0.00 0.00 2.71
387 388 2.822707 ACGGAGGGAGTAGTACACAT 57.177 50.000 2.52 0.00 0.00 3.21
388 389 3.719268 TTACGGAGGGAGTAGTACACA 57.281 47.619 2.52 0.00 0.00 3.72
389 390 4.013050 AGTTTACGGAGGGAGTAGTACAC 58.987 47.826 2.52 0.00 0.00 2.90
390 391 4.307032 AGTTTACGGAGGGAGTAGTACA 57.693 45.455 2.52 0.00 0.00 2.90
391 392 6.951062 ATTAGTTTACGGAGGGAGTAGTAC 57.049 41.667 0.00 0.00 0.00 2.73
393 394 9.294614 CTTATATTAGTTTACGGAGGGAGTAGT 57.705 37.037 0.00 0.00 0.00 2.73
394 395 9.512588 TCTTATATTAGTTTACGGAGGGAGTAG 57.487 37.037 0.00 0.00 0.00 2.57
395 396 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
396 397 7.039853 GCTCTTATATTAGTTTACGGAGGGAGT 60.040 40.741 0.00 0.00 0.00 3.85
397 398 7.314393 GCTCTTATATTAGTTTACGGAGGGAG 58.686 42.308 0.00 0.00 0.00 4.30
398 399 6.072286 CGCTCTTATATTAGTTTACGGAGGGA 60.072 42.308 0.00 0.00 34.63 4.20
399 400 6.091437 CGCTCTTATATTAGTTTACGGAGGG 58.909 44.000 0.00 0.00 0.00 4.30
400 401 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
401 402 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
402 403 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
403 404 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
417 418 9.570488 CACTACTTTAGTATTCTAAACGCTCTT 57.430 33.333 0.76 0.00 40.05 2.85
418 419 8.954350 TCACTACTTTAGTATTCTAAACGCTCT 58.046 33.333 0.76 0.00 40.05 4.09
419 420 9.733219 ATCACTACTTTAGTATTCTAAACGCTC 57.267 33.333 0.76 0.00 40.05 5.03
420 421 9.733219 GATCACTACTTTAGTATTCTAAACGCT 57.267 33.333 0.76 0.00 40.05 5.07
421 422 9.733219 AGATCACTACTTTAGTATTCTAAACGC 57.267 33.333 0.76 0.00 40.05 4.84
427 428 9.733219 GCGTTTAGATCACTACTTTAGTATTCT 57.267 33.333 0.00 0.00 37.23 2.40
428 429 9.733219 AGCGTTTAGATCACTACTTTAGTATTC 57.267 33.333 0.00 0.00 37.23 1.75
431 432 9.918630 AAAAGCGTTTAGATCACTACTTTAGTA 57.081 29.630 0.00 0.00 37.23 1.82
432 433 8.828688 AAAAGCGTTTAGATCACTACTTTAGT 57.171 30.769 0.00 0.00 40.28 2.24
449 450 9.106070 CCCTCTGTAAACTAATATAAAAGCGTT 57.894 33.333 0.00 0.00 0.00 4.84
450 451 8.480501 TCCCTCTGTAAACTAATATAAAAGCGT 58.519 33.333 0.00 0.00 0.00 5.07
451 452 8.882415 TCCCTCTGTAAACTAATATAAAAGCG 57.118 34.615 0.00 0.00 0.00 4.68
452 453 9.833917 ACTCCCTCTGTAAACTAATATAAAAGC 57.166 33.333 0.00 0.00 0.00 3.51
464 465 9.096160 GCTTAGTTTATTACTCCCTCTGTAAAC 57.904 37.037 0.00 0.00 38.33 2.01
465 466 8.818860 TGCTTAGTTTATTACTCCCTCTGTAAA 58.181 33.333 0.00 0.00 38.33 2.01
466 467 8.370266 TGCTTAGTTTATTACTCCCTCTGTAA 57.630 34.615 0.00 0.00 38.33 2.41
467 468 7.618512 ACTGCTTAGTTTATTACTCCCTCTGTA 59.381 37.037 0.00 0.00 38.33 2.74
468 469 6.440965 ACTGCTTAGTTTATTACTCCCTCTGT 59.559 38.462 0.00 0.00 38.33 3.41
469 470 6.758886 CACTGCTTAGTTTATTACTCCCTCTG 59.241 42.308 0.00 0.00 38.33 3.35
470 471 6.668283 TCACTGCTTAGTTTATTACTCCCTCT 59.332 38.462 0.00 0.00 38.33 3.69
471 472 6.875076 TCACTGCTTAGTTTATTACTCCCTC 58.125 40.000 0.00 0.00 38.33 4.30
472 473 6.869206 TCACTGCTTAGTTTATTACTCCCT 57.131 37.500 0.00 0.00 38.33 4.20
473 474 6.539103 CCTTCACTGCTTAGTTTATTACTCCC 59.461 42.308 0.00 0.00 38.33 4.30
474 475 6.037281 GCCTTCACTGCTTAGTTTATTACTCC 59.963 42.308 0.00 0.00 38.33 3.85
475 476 6.819146 AGCCTTCACTGCTTAGTTTATTACTC 59.181 38.462 0.00 0.00 38.33 2.59
476 477 6.712276 AGCCTTCACTGCTTAGTTTATTACT 58.288 36.000 0.00 0.00 41.04 2.24
477 478 6.986904 AGCCTTCACTGCTTAGTTTATTAC 57.013 37.500 0.00 0.00 34.87 1.89
478 479 8.319146 AGTTAGCCTTCACTGCTTAGTTTATTA 58.681 33.333 0.00 0.00 40.23 0.98
479 480 7.168905 AGTTAGCCTTCACTGCTTAGTTTATT 58.831 34.615 0.00 0.00 40.23 1.40
480 481 6.712276 AGTTAGCCTTCACTGCTTAGTTTAT 58.288 36.000 0.00 0.00 40.23 1.40
481 482 6.110411 AGTTAGCCTTCACTGCTTAGTTTA 57.890 37.500 0.00 0.00 40.23 2.01
482 483 4.974399 AGTTAGCCTTCACTGCTTAGTTT 58.026 39.130 0.00 0.00 40.23 2.66
483 484 4.625607 AGTTAGCCTTCACTGCTTAGTT 57.374 40.909 0.00 0.00 40.23 2.24
484 485 4.625607 AAGTTAGCCTTCACTGCTTAGT 57.374 40.909 0.00 0.00 40.23 2.24
510 511 9.827411 GGTCTAGAGTGTCAAATTTTTCATAAC 57.173 33.333 0.00 0.00 0.00 1.89
511 512 9.567776 TGGTCTAGAGTGTCAAATTTTTCATAA 57.432 29.630 0.00 0.00 0.00 1.90
512 513 9.567776 TTGGTCTAGAGTGTCAAATTTTTCATA 57.432 29.630 0.00 0.00 0.00 2.15
513 514 8.463930 TTGGTCTAGAGTGTCAAATTTTTCAT 57.536 30.769 0.00 0.00 0.00 2.57
514 515 7.873719 TTGGTCTAGAGTGTCAAATTTTTCA 57.126 32.000 0.00 0.00 0.00 2.69
515 516 9.827411 GTATTGGTCTAGAGTGTCAAATTTTTC 57.173 33.333 0.00 0.00 0.00 2.29
516 517 9.349713 TGTATTGGTCTAGAGTGTCAAATTTTT 57.650 29.630 0.00 0.00 0.00 1.94
517 518 8.918202 TGTATTGGTCTAGAGTGTCAAATTTT 57.082 30.769 0.00 0.00 0.00 1.82
518 519 9.520515 AATGTATTGGTCTAGAGTGTCAAATTT 57.479 29.630 0.00 0.00 0.00 1.82
519 520 9.167311 GAATGTATTGGTCTAGAGTGTCAAATT 57.833 33.333 0.00 0.00 0.00 1.82
520 521 8.321353 TGAATGTATTGGTCTAGAGTGTCAAAT 58.679 33.333 0.00 0.00 0.00 2.32
521 522 7.676004 TGAATGTATTGGTCTAGAGTGTCAAA 58.324 34.615 0.00 0.00 0.00 2.69
522 523 7.239763 TGAATGTATTGGTCTAGAGTGTCAA 57.760 36.000 0.00 0.00 0.00 3.18
523 524 6.850752 TGAATGTATTGGTCTAGAGTGTCA 57.149 37.500 0.00 0.00 0.00 3.58
524 525 8.547967 TTTTGAATGTATTGGTCTAGAGTGTC 57.452 34.615 0.00 0.00 0.00 3.67
525 526 8.918202 TTTTTGAATGTATTGGTCTAGAGTGT 57.082 30.769 0.00 0.00 0.00 3.55
526 527 9.778993 CATTTTTGAATGTATTGGTCTAGAGTG 57.221 33.333 0.00 0.00 0.00 3.51
527 528 9.739276 TCATTTTTGAATGTATTGGTCTAGAGT 57.261 29.630 0.00 0.00 0.00 3.24
573 574 9.929722 GCGACATTTTCAATATGTAATTACAGA 57.070 29.630 22.03 18.59 39.92 3.41
574 575 9.715123 TGCGACATTTTCAATATGTAATTACAG 57.285 29.630 22.03 9.83 39.92 2.74
582 583 9.585099 AATTGTATTGCGACATTTTCAATATGT 57.415 25.926 0.00 0.00 38.86 2.29
583 584 9.838163 CAATTGTATTGCGACATTTTCAATATG 57.162 29.630 0.00 0.00 35.79 1.78
584 585 8.542132 GCAATTGTATTGCGACATTTTCAATAT 58.458 29.630 7.40 0.00 35.79 1.28
585 586 7.893824 GCAATTGTATTGCGACATTTTCAATA 58.106 30.769 7.40 0.00 35.58 1.90
586 587 6.764094 GCAATTGTATTGCGACATTTTCAAT 58.236 32.000 7.40 0.00 35.58 2.57
587 588 6.150738 GCAATTGTATTGCGACATTTTCAA 57.849 33.333 7.40 0.00 35.58 2.69
588 589 5.760193 GCAATTGTATTGCGACATTTTCA 57.240 34.783 7.40 0.00 35.58 2.69
613 614 9.415544 GCTGTCAATGAAGTAAGAAAAATGATT 57.584 29.630 0.00 0.00 0.00 2.57
614 615 8.800332 AGCTGTCAATGAAGTAAGAAAAATGAT 58.200 29.630 0.00 0.00 0.00 2.45
615 616 8.169977 AGCTGTCAATGAAGTAAGAAAAATGA 57.830 30.769 0.00 0.00 0.00 2.57
616 617 9.897744 TTAGCTGTCAATGAAGTAAGAAAAATG 57.102 29.630 0.00 0.00 0.00 2.32
620 621 9.944376 AGTATTAGCTGTCAATGAAGTAAGAAA 57.056 29.630 0.00 0.00 0.00 2.52
621 622 9.944376 AAGTATTAGCTGTCAATGAAGTAAGAA 57.056 29.630 0.00 0.00 0.00 2.52
622 623 9.944376 AAAGTATTAGCTGTCAATGAAGTAAGA 57.056 29.630 0.00 0.00 0.00 2.10
648 649 8.726988 GCCAACTTTATTGTCACAGAAGTATTA 58.273 33.333 4.35 0.00 30.91 0.98
649 650 7.230510 TGCCAACTTTATTGTCACAGAAGTATT 59.769 33.333 4.35 0.00 30.91 1.89
650 651 6.714810 TGCCAACTTTATTGTCACAGAAGTAT 59.285 34.615 4.35 0.00 30.91 2.12
651 652 6.058833 TGCCAACTTTATTGTCACAGAAGTA 58.941 36.000 4.35 0.00 30.91 2.24
652 653 4.887071 TGCCAACTTTATTGTCACAGAAGT 59.113 37.500 0.00 0.00 32.33 3.01
653 654 5.437289 TGCCAACTTTATTGTCACAGAAG 57.563 39.130 0.00 0.00 0.00 2.85
654 655 5.843673 TTGCCAACTTTATTGTCACAGAA 57.156 34.783 0.00 0.00 0.00 3.02
655 656 5.359576 ACTTTGCCAACTTTATTGTCACAGA 59.640 36.000 0.00 0.00 0.00 3.41
656 657 5.459762 CACTTTGCCAACTTTATTGTCACAG 59.540 40.000 0.00 0.00 0.00 3.66
657 658 5.126222 TCACTTTGCCAACTTTATTGTCACA 59.874 36.000 0.00 0.00 0.00 3.58
658 659 5.587289 TCACTTTGCCAACTTTATTGTCAC 58.413 37.500 0.00 0.00 0.00 3.67
659 660 5.843673 TCACTTTGCCAACTTTATTGTCA 57.156 34.783 0.00 0.00 0.00 3.58
660 661 8.243426 TCATATCACTTTGCCAACTTTATTGTC 58.757 33.333 0.00 0.00 0.00 3.18
661 662 8.121305 TCATATCACTTTGCCAACTTTATTGT 57.879 30.769 0.00 0.00 0.00 2.71
662 663 9.241317 GATCATATCACTTTGCCAACTTTATTG 57.759 33.333 0.00 0.00 0.00 1.90
663 664 9.193806 AGATCATATCACTTTGCCAACTTTATT 57.806 29.630 0.00 0.00 0.00 1.40
664 665 8.757982 AGATCATATCACTTTGCCAACTTTAT 57.242 30.769 0.00 0.00 0.00 1.40
665 666 9.330063 CTAGATCATATCACTTTGCCAACTTTA 57.670 33.333 0.00 0.00 0.00 1.85
666 667 7.831193 ACTAGATCATATCACTTTGCCAACTTT 59.169 33.333 0.00 0.00 0.00 2.66
667 668 7.281774 CACTAGATCATATCACTTTGCCAACTT 59.718 37.037 0.00 0.00 0.00 2.66
668 669 6.765036 CACTAGATCATATCACTTTGCCAACT 59.235 38.462 0.00 0.00 0.00 3.16
669 670 6.763135 TCACTAGATCATATCACTTTGCCAAC 59.237 38.462 0.00 0.00 0.00 3.77
670 671 6.763135 GTCACTAGATCATATCACTTTGCCAA 59.237 38.462 0.00 0.00 0.00 4.52
671 672 6.283694 GTCACTAGATCATATCACTTTGCCA 58.716 40.000 0.00 0.00 0.00 4.92
672 673 5.403766 CGTCACTAGATCATATCACTTTGCC 59.596 44.000 0.00 0.00 0.00 4.52
673 674 6.209361 TCGTCACTAGATCATATCACTTTGC 58.791 40.000 0.00 0.00 0.00 3.68
674 675 8.078596 TCATCGTCACTAGATCATATCACTTTG 58.921 37.037 0.00 0.00 0.00 2.77
675 676 8.171164 TCATCGTCACTAGATCATATCACTTT 57.829 34.615 0.00 0.00 0.00 2.66
676 677 7.446931 ACTCATCGTCACTAGATCATATCACTT 59.553 37.037 0.00 0.00 0.00 3.16
677 678 6.939730 ACTCATCGTCACTAGATCATATCACT 59.060 38.462 0.00 0.00 0.00 3.41
678 679 7.139896 ACTCATCGTCACTAGATCATATCAC 57.860 40.000 0.00 0.00 0.00 3.06
679 680 7.360438 CGAACTCATCGTCACTAGATCATATCA 60.360 40.741 0.00 0.00 46.52 2.15
680 681 6.958752 CGAACTCATCGTCACTAGATCATATC 59.041 42.308 0.00 0.00 46.52 1.63
681 682 6.836953 CGAACTCATCGTCACTAGATCATAT 58.163 40.000 0.00 0.00 46.52 1.78
682 683 6.229561 CGAACTCATCGTCACTAGATCATA 57.770 41.667 0.00 0.00 46.52 2.15
683 684 5.102020 CGAACTCATCGTCACTAGATCAT 57.898 43.478 0.00 0.00 46.52 2.45
684 685 4.537936 CGAACTCATCGTCACTAGATCA 57.462 45.455 0.00 0.00 46.52 2.92
698 699 0.953471 CCGCATTGAACCCGAACTCA 60.953 55.000 0.00 0.00 0.00 3.41
709 710 1.005037 AAGCACGACTCCGCATTGA 60.005 52.632 0.00 0.00 39.95 2.57
714 715 4.681978 ACCCAAGCACGACTCCGC 62.682 66.667 0.00 0.00 39.95 5.54
727 728 2.109387 CGACACGAACCCAACCCA 59.891 61.111 0.00 0.00 0.00 4.51
728 729 3.351416 GCGACACGAACCCAACCC 61.351 66.667 0.00 0.00 0.00 4.11
739 740 2.049063 AGAGACCAAGCGCGACAC 60.049 61.111 12.10 0.00 0.00 3.67
748 749 2.962569 CGCCGACAGAGAGACCAA 59.037 61.111 0.00 0.00 0.00 3.67
749 750 3.749064 GCGCCGACAGAGAGACCA 61.749 66.667 0.00 0.00 0.00 4.02
751 752 3.324099 TTCGCGCCGACAGAGAGAC 62.324 63.158 0.00 0.00 34.89 3.36
766 767 1.738099 CCTGGCTTCAGTCGGTTCG 60.738 63.158 0.00 0.00 36.81 3.95
767 768 2.035442 GCCTGGCTTCAGTCGGTTC 61.035 63.158 12.43 0.00 36.81 3.62
791 792 3.303761 TACGGGCCATCCACACGTG 62.304 63.158 15.48 15.48 38.34 4.49
792 793 2.998480 TACGGGCCATCCACACGT 60.998 61.111 4.39 5.52 41.10 4.49
793 794 2.202878 CTACGGGCCATCCACACG 60.203 66.667 4.39 0.00 34.36 4.49
794 795 1.449601 CACTACGGGCCATCCACAC 60.450 63.158 4.39 0.00 34.36 3.82
795 796 1.485294 AACACTACGGGCCATCCACA 61.485 55.000 4.39 0.00 34.36 4.17
796 797 0.743345 GAACACTACGGGCCATCCAC 60.743 60.000 4.39 0.00 34.36 4.02
797 798 1.600107 GAACACTACGGGCCATCCA 59.400 57.895 4.39 0.00 34.36 3.41
798 799 1.153229 GGAACACTACGGGCCATCC 60.153 63.158 4.39 0.00 0.00 3.51
832 833 2.820037 GCGTGGCTGGGCTTCTAC 60.820 66.667 0.00 0.00 0.00 2.59
834 835 4.711949 CTGCGTGGCTGGGCTTCT 62.712 66.667 0.00 0.00 0.00 2.85
959 961 0.392729 GTCGGTCGGGAGAAGAGAGA 60.393 60.000 0.00 0.00 42.89 3.10
960 962 1.378124 GGTCGGTCGGGAGAAGAGAG 61.378 65.000 0.00 0.00 42.89 3.20
1155 1157 0.939577 CACGTTCAGGGACAGACACG 60.940 60.000 0.00 0.00 35.74 4.49
1157 1159 1.069090 GCACGTTCAGGGACAGACA 59.931 57.895 0.00 0.00 0.00 3.41
1195 1197 3.003763 AGGACCCGGGAGCAGTTC 61.004 66.667 32.02 13.44 0.00 3.01
1196 1198 3.322466 CAGGACCCGGGAGCAGTT 61.322 66.667 32.02 1.84 0.00 3.16
1197 1199 3.625632 ATCAGGACCCGGGAGCAGT 62.626 63.158 32.02 2.86 0.00 4.40
1198 1200 1.048724 TAATCAGGACCCGGGAGCAG 61.049 60.000 32.02 14.55 0.00 4.24
1199 1201 0.619255 TTAATCAGGACCCGGGAGCA 60.619 55.000 32.02 6.12 0.00 4.26
1200 1202 0.765510 ATTAATCAGGACCCGGGAGC 59.234 55.000 32.02 18.87 0.00 4.70
1201 1203 3.646637 ACTAATTAATCAGGACCCGGGAG 59.353 47.826 32.02 11.82 0.00 4.30
1202 1204 3.660959 ACTAATTAATCAGGACCCGGGA 58.339 45.455 32.02 3.67 0.00 5.14
1203 1205 4.386711 GAACTAATTAATCAGGACCCGGG 58.613 47.826 22.25 22.25 0.00 5.73
1204 1206 4.386711 GGAACTAATTAATCAGGACCCGG 58.613 47.826 0.00 0.00 0.00 5.73
1205 1207 4.056050 CGGAACTAATTAATCAGGACCCG 58.944 47.826 2.57 2.57 0.00 5.28
1206 1208 5.032327 ACGGAACTAATTAATCAGGACCC 57.968 43.478 0.00 0.00 0.00 4.46
1207 1209 6.221659 CCTACGGAACTAATTAATCAGGACC 58.778 44.000 0.00 0.00 0.00 4.46
1208 1210 6.041296 TCCCTACGGAACTAATTAATCAGGAC 59.959 42.308 0.00 0.00 34.19 3.85
1209 1211 6.138263 TCCCTACGGAACTAATTAATCAGGA 58.862 40.000 0.00 0.00 34.19 3.86
1210 1212 6.415206 TCCCTACGGAACTAATTAATCAGG 57.585 41.667 0.00 0.00 34.19 3.86
1211 1213 6.874134 CCATCCCTACGGAACTAATTAATCAG 59.126 42.308 0.00 0.00 43.10 2.90
1212 1214 6.239772 CCCATCCCTACGGAACTAATTAATCA 60.240 42.308 0.00 0.00 43.10 2.57
1213 1215 6.171213 CCCATCCCTACGGAACTAATTAATC 58.829 44.000 0.00 0.00 43.10 1.75
1219 1221 1.291637 TCCCCATCCCTACGGAACTAA 59.708 52.381 0.00 0.00 43.10 2.24
1227 1229 2.913617 CCCTAAGAATCCCCATCCCTAC 59.086 54.545 0.00 0.00 0.00 3.18
1262 1265 2.433146 GGACGCCCCCTAGAAGTCC 61.433 68.421 0.00 0.00 43.55 3.85
1277 1281 1.227002 GCCTCGACGAATCAGGGAC 60.227 63.158 0.00 0.00 0.00 4.46
1315 1319 6.318144 TCAGGTTCTACTCGTACTCCAATAAG 59.682 42.308 0.00 0.00 0.00 1.73
1318 1322 4.597004 TCAGGTTCTACTCGTACTCCAAT 58.403 43.478 0.00 0.00 0.00 3.16
1328 1332 4.517285 TGGCAATCATTCAGGTTCTACTC 58.483 43.478 0.00 0.00 0.00 2.59
1380 1384 2.024918 CACATACTGCCGAATGCCC 58.975 57.895 0.00 0.00 40.16 5.36
1429 1437 7.112779 CCAAAATAGAACATCCCTAACTGAGT 58.887 38.462 0.00 0.00 0.00 3.41
1464 1472 7.630242 ATCAAACCATCACACTACCAATTAG 57.370 36.000 0.00 0.00 0.00 1.73
1465 1473 8.952278 GTAATCAAACCATCACACTACCAATTA 58.048 33.333 0.00 0.00 0.00 1.40
1471 1479 7.667043 TCTTGTAATCAAACCATCACACTAC 57.333 36.000 0.00 0.00 32.87 2.73
1472 1480 8.564574 GTTTCTTGTAATCAAACCATCACACTA 58.435 33.333 0.00 0.00 32.87 2.74
1473 1481 7.425606 GTTTCTTGTAATCAAACCATCACACT 58.574 34.615 0.00 0.00 32.87 3.55
1478 1486 5.856455 CACCGTTTCTTGTAATCAAACCATC 59.144 40.000 0.00 0.00 32.87 3.51
1479 1487 5.768317 CACCGTTTCTTGTAATCAAACCAT 58.232 37.500 0.00 0.00 32.87 3.55
1497 1505 3.074412 CACATTAAAGAAGGAGCACCGT 58.926 45.455 0.00 0.00 41.83 4.83
1554 1563 1.098050 GCTAATCCAACACCTGCAGG 58.902 55.000 31.60 31.60 42.17 4.85
1562 1571 4.072131 GGACAAAGTGAGCTAATCCAACA 58.928 43.478 0.00 0.00 0.00 3.33
1567 1576 4.517285 TCCATGGACAAAGTGAGCTAATC 58.483 43.478 11.44 0.00 0.00 1.75
1577 1586 6.000219 CCTGTAGGAATATCCATGGACAAAG 59.000 44.000 18.99 4.76 39.61 2.77
1579 1588 4.350816 CCCTGTAGGAATATCCATGGACAA 59.649 45.833 18.99 9.04 39.61 3.18
1580 1589 3.909995 CCCTGTAGGAATATCCATGGACA 59.090 47.826 18.99 5.62 39.61 4.02
1581 1590 3.264450 CCCCTGTAGGAATATCCATGGAC 59.736 52.174 18.99 3.72 39.61 4.02
1582 1591 3.115962 ACCCCTGTAGGAATATCCATGGA 60.116 47.826 18.88 18.88 39.61 3.41
1583 1592 3.260205 ACCCCTGTAGGAATATCCATGG 58.740 50.000 4.97 4.97 39.61 3.66
1584 1593 4.507335 CCAACCCCTGTAGGAATATCCATG 60.507 50.000 0.00 0.00 39.61 3.66
1585 1594 3.657727 CCAACCCCTGTAGGAATATCCAT 59.342 47.826 0.00 0.00 39.61 3.41
1586 1595 3.053077 CCAACCCCTGTAGGAATATCCA 58.947 50.000 0.00 0.00 39.61 3.41
1587 1596 3.323775 TCCAACCCCTGTAGGAATATCC 58.676 50.000 0.00 0.00 38.24 2.59
1588 1597 5.584551 AATCCAACCCCTGTAGGAATATC 57.415 43.478 0.00 0.00 38.24 1.63
1589 1598 5.014228 GCTAATCCAACCCCTGTAGGAATAT 59.986 44.000 0.00 0.00 38.24 1.28
1590 1599 4.349930 GCTAATCCAACCCCTGTAGGAATA 59.650 45.833 0.00 0.00 38.24 1.75
1591 1600 3.138468 GCTAATCCAACCCCTGTAGGAAT 59.862 47.826 0.00 0.00 38.24 3.01
1592 1601 2.508300 GCTAATCCAACCCCTGTAGGAA 59.492 50.000 0.00 0.00 38.24 3.36
1593 1602 2.124411 GCTAATCCAACCCCTGTAGGA 58.876 52.381 0.00 0.00 38.24 2.94
1594 1603 2.104963 GAGCTAATCCAACCCCTGTAGG 59.895 54.545 0.00 0.00 0.00 3.18
1595 1604 2.771943 TGAGCTAATCCAACCCCTGTAG 59.228 50.000 0.00 0.00 0.00 2.74
1596 1605 2.840511 TGAGCTAATCCAACCCCTGTA 58.159 47.619 0.00 0.00 0.00 2.74
1597 1606 1.668826 TGAGCTAATCCAACCCCTGT 58.331 50.000 0.00 0.00 0.00 4.00
1598 1607 3.217626 GAATGAGCTAATCCAACCCCTG 58.782 50.000 0.00 0.00 0.00 4.45
1599 1608 2.852449 TGAATGAGCTAATCCAACCCCT 59.148 45.455 0.00 0.00 0.00 4.79
1600 1609 3.297134 TGAATGAGCTAATCCAACCCC 57.703 47.619 0.00 0.00 0.00 4.95
1601 1610 4.037208 CACATGAATGAGCTAATCCAACCC 59.963 45.833 0.00 0.00 0.00 4.11
1602 1611 4.641989 ACACATGAATGAGCTAATCCAACC 59.358 41.667 0.00 0.00 0.00 3.77
1603 1612 5.824904 ACACATGAATGAGCTAATCCAAC 57.175 39.130 0.00 0.00 0.00 3.77
1604 1613 5.711506 ACAACACATGAATGAGCTAATCCAA 59.288 36.000 0.00 0.00 0.00 3.53
1605 1614 5.255687 ACAACACATGAATGAGCTAATCCA 58.744 37.500 0.00 0.00 0.00 3.41
1606 1615 5.824904 ACAACACATGAATGAGCTAATCC 57.175 39.130 0.00 0.00 0.00 3.01
1607 1616 8.025445 AGAAAACAACACATGAATGAGCTAATC 58.975 33.333 0.00 0.00 0.00 1.75
1608 1617 7.889469 AGAAAACAACACATGAATGAGCTAAT 58.111 30.769 0.00 0.00 0.00 1.73
1609 1618 7.013178 TGAGAAAACAACACATGAATGAGCTAA 59.987 33.333 0.00 0.00 0.00 3.09
1610 1619 6.486320 TGAGAAAACAACACATGAATGAGCTA 59.514 34.615 0.00 0.00 0.00 3.32
1611 1620 5.300034 TGAGAAAACAACACATGAATGAGCT 59.700 36.000 0.00 0.00 0.00 4.09
1612 1621 5.522456 TGAGAAAACAACACATGAATGAGC 58.478 37.500 0.00 0.00 0.00 4.26
1613 1622 7.115805 CCAATGAGAAAACAACACATGAATGAG 59.884 37.037 0.00 0.00 0.00 2.90
1614 1623 6.924612 CCAATGAGAAAACAACACATGAATGA 59.075 34.615 0.00 0.00 0.00 2.57
1615 1624 6.347079 GCCAATGAGAAAACAACACATGAATG 60.347 38.462 0.00 0.00 0.00 2.67
1616 1625 5.697633 GCCAATGAGAAAACAACACATGAAT 59.302 36.000 0.00 0.00 0.00 2.57
1617 1626 5.049167 GCCAATGAGAAAACAACACATGAA 58.951 37.500 0.00 0.00 0.00 2.57
1697 1709 4.314961 TCAATACCGCATGCCAGTATAAG 58.685 43.478 21.92 18.12 0.00 1.73
1758 1770 5.406477 TCAGTCGTCAATGATGAGTTGAAAG 59.594 40.000 9.92 0.03 37.34 2.62
1869 1884 5.122519 TCTTTAAGACAAGACATGCACACA 58.877 37.500 0.00 0.00 0.00 3.72
1937 1952 6.456501 TGCAAATGATGAAACATTGTGATGA 58.543 32.000 0.00 0.00 39.88 2.92
1938 1953 6.713792 TGCAAATGATGAAACATTGTGATG 57.286 33.333 0.00 0.00 39.88 3.07
1939 1954 7.915293 AATGCAAATGATGAAACATTGTGAT 57.085 28.000 0.00 0.00 39.88 3.06
1991 2007 5.843673 TGCACCTTCAGAACAAAACATAA 57.156 34.783 0.00 0.00 0.00 1.90
2035 2051 0.750911 GCCCTTCCTCTGCATCCTTG 60.751 60.000 0.00 0.00 0.00 3.61
2096 2112 5.494724 TGACTCCTGATTTGGAAAGATCTG 58.505 41.667 0.00 0.00 35.43 2.90
2146 2162 1.546029 TCATCCGGATCTAATGGCTCG 59.454 52.381 15.88 0.00 0.00 5.03
2161 2177 2.019984 GGTTCTGGCTCAACATCATCC 58.980 52.381 2.30 0.00 0.00 3.51
2162 2178 2.715046 TGGTTCTGGCTCAACATCATC 58.285 47.619 2.30 0.00 0.00 2.92
2461 2478 8.917594 AAGTAATTTCCTACTTGCTTGGTGAGC 61.918 40.741 0.00 0.00 39.98 4.26
2462 2479 5.940470 AGTAATTTCCTACTTGCTTGGTGAG 59.060 40.000 0.00 0.00 0.00 3.51
2463 2480 5.876357 AGTAATTTCCTACTTGCTTGGTGA 58.124 37.500 0.00 0.00 0.00 4.02
2472 2490 9.636789 ACAAAGTAACCAAGTAATTTCCTACTT 57.363 29.630 0.00 0.00 41.75 2.24
2491 2509 9.090692 GCGAAAAGGAATACATACTACAAAGTA 57.909 33.333 0.00 0.00 42.35 2.24
2515 2533 1.238439 TTGAAGAAGGGAAAGCAGCG 58.762 50.000 0.00 0.00 0.00 5.18
2616 2634 7.067494 ACAATCAGAACTATTTCCTATGGTTGC 59.933 37.037 6.50 0.00 32.52 4.17
2621 2639 8.722480 TGTGACAATCAGAACTATTTCCTATG 57.278 34.615 0.00 0.00 31.28 2.23
2705 2723 8.655970 CATTAGACAATCGTATTCACAACAGAA 58.344 33.333 0.00 0.00 0.00 3.02
2810 2828 5.163663 GGCAACAATTCATCAATAGTTCCGA 60.164 40.000 0.00 0.00 0.00 4.55
2811 2829 5.036737 GGCAACAATTCATCAATAGTTCCG 58.963 41.667 0.00 0.00 0.00 4.30
2832 2850 0.796927 GTAACGTCTCTTTGCCTGGC 59.203 55.000 12.87 12.87 0.00 4.85
2922 2945 6.092807 ACGCTCAGGTTTTATCAAGAGAAATC 59.907 38.462 0.00 0.00 0.00 2.17
2988 3011 4.887071 TCTGCTTTGTTGTGTATTTCTGGT 59.113 37.500 0.00 0.00 0.00 4.00
3025 3049 1.380302 CCACCTGCCTAACCTGCTT 59.620 57.895 0.00 0.00 0.00 3.91
3035 3059 1.675641 CTGTAGCAACCCACCTGCC 60.676 63.158 0.00 0.00 40.86 4.85
3036 3060 2.335712 GCTGTAGCAACCCACCTGC 61.336 63.158 0.00 0.00 41.59 4.85
3288 3317 8.900511 ATGTGAAAACAAATCGATAAGACATG 57.099 30.769 0.00 0.00 0.00 3.21
3289 3318 9.345517 CAATGTGAAAACAAATCGATAAGACAT 57.654 29.630 0.00 0.00 0.00 3.06
3296 3325 5.925969 GGGTTCAATGTGAAAACAAATCGAT 59.074 36.000 0.00 0.00 38.22 3.59
3299 3328 7.552458 AAAGGGTTCAATGTGAAAACAAATC 57.448 32.000 0.00 0.00 38.22 2.17
3441 3470 4.098914 ACCACTTAGCATGAAAGGACAA 57.901 40.909 0.00 0.00 0.00 3.18
3489 3518 2.363306 AGGAATCACAACACCTGCAA 57.637 45.000 0.00 0.00 0.00 4.08
3691 3720 3.718956 CTGGGATAGAAAGGGAATCACCT 59.281 47.826 0.00 0.00 44.56 4.00
3769 3798 5.651530 TGATCGTCATCTTCACTTAACTCC 58.348 41.667 0.00 0.00 0.00 3.85
3786 3815 4.346127 TGATGGATTCATCCTCTTGATCGT 59.654 41.667 11.63 0.00 46.92 3.73
3805 3834 2.860009 CCAAGACCCTGATGGATGATG 58.140 52.381 0.00 0.00 36.27 3.07
3806 3835 1.144503 GCCAAGACCCTGATGGATGAT 59.855 52.381 0.00 0.00 36.27 2.45
3807 3836 0.548031 GCCAAGACCCTGATGGATGA 59.452 55.000 0.00 0.00 36.27 2.92
3862 3891 2.542020 TTGCAAAGATCACGGTCTCA 57.458 45.000 0.00 0.00 0.00 3.27
3928 3957 2.686572 GCCCTCCCGGTAACCCATT 61.687 63.158 0.00 0.00 0.00 3.16
3934 3963 3.093835 CCCATGCCCTCCCGGTAA 61.094 66.667 0.00 0.00 0.00 2.85
3940 3969 3.574237 CCTAGCCCCATGCCCTCC 61.574 72.222 0.00 0.00 42.71 4.30
3997 4026 0.107361 ATTGCTTGGCCGGTAGTACC 60.107 55.000 9.50 9.50 34.05 3.34
4007 4036 0.955428 TGGTCGAGTGATTGCTTGGC 60.955 55.000 0.00 0.00 0.00 4.52
4034 4063 3.730761 CTCGCCTGTGGTTGCAGC 61.731 66.667 0.00 0.00 35.28 5.25
4036 4065 3.555324 TCCTCGCCTGTGGTTGCA 61.555 61.111 0.00 0.00 0.00 4.08
4037 4066 3.050275 GTCCTCGCCTGTGGTTGC 61.050 66.667 0.00 0.00 0.00 4.17
4066 4095 1.021202 TCTTGTCTTTGTTGCGGTGG 58.979 50.000 0.00 0.00 0.00 4.61
4075 4104 1.126846 CGGCTACGCTTCTTGTCTTTG 59.873 52.381 0.00 0.00 0.00 2.77
4255 4284 2.438434 CCATTGGCCTGACCCGAC 60.438 66.667 3.32 0.00 37.83 4.79
4387 4416 2.100031 CGCATCGTGCACTGCCTTA 61.100 57.895 21.39 0.00 45.36 2.69
4480 4509 0.747852 CCTTCTCCTTCCTAGCGACC 59.252 60.000 0.00 0.00 0.00 4.79
4486 4515 5.020132 CACTTCTTCTCCTTCTCCTTCCTA 58.980 45.833 0.00 0.00 0.00 2.94
4543 4572 0.889186 ATCAAACACCCACCGACTGC 60.889 55.000 0.00 0.00 0.00 4.40
4547 4576 0.474614 TCCAATCAAACACCCACCGA 59.525 50.000 0.00 0.00 0.00 4.69
4560 4589 3.686726 CCAACTACAACAGAGCTCCAATC 59.313 47.826 10.93 0.00 0.00 2.67
4584 4613 6.240263 CCCCTCTAAATTGGATATCACATCCA 60.240 42.308 4.83 1.80 45.71 3.41
4585 4614 6.183347 CCCCTCTAAATTGGATATCACATCC 58.817 44.000 4.83 0.00 38.66 3.51
4586 4615 6.784031 ACCCCTCTAAATTGGATATCACATC 58.216 40.000 4.83 0.00 0.00 3.06
4587 4616 6.786843 ACCCCTCTAAATTGGATATCACAT 57.213 37.500 4.83 0.00 0.00 3.21
4588 4617 6.590656 AACCCCTCTAAATTGGATATCACA 57.409 37.500 4.83 0.00 0.00 3.58
4589 4618 7.255139 CGAAAACCCCTCTAAATTGGATATCAC 60.255 40.741 4.83 0.00 0.00 3.06
4590 4619 6.770785 CGAAAACCCCTCTAAATTGGATATCA 59.229 38.462 4.83 0.00 0.00 2.15
4591 4620 6.771267 ACGAAAACCCCTCTAAATTGGATATC 59.229 38.462 0.00 0.00 0.00 1.63
4592 4621 6.669631 ACGAAAACCCCTCTAAATTGGATAT 58.330 36.000 0.00 0.00 0.00 1.63
4593 4622 6.069705 ACGAAAACCCCTCTAAATTGGATA 57.930 37.500 0.00 0.00 0.00 2.59
4594 4623 4.930696 ACGAAAACCCCTCTAAATTGGAT 58.069 39.130 0.00 0.00 0.00 3.41
4595 4624 4.376225 ACGAAAACCCCTCTAAATTGGA 57.624 40.909 0.00 0.00 0.00 3.53
4596 4625 5.883673 TCATACGAAAACCCCTCTAAATTGG 59.116 40.000 0.00 0.00 0.00 3.16
4597 4626 6.458342 GCTCATACGAAAACCCCTCTAAATTG 60.458 42.308 0.00 0.00 0.00 2.32
4598 4627 5.589050 GCTCATACGAAAACCCCTCTAAATT 59.411 40.000 0.00 0.00 0.00 1.82
4599 4628 5.123936 GCTCATACGAAAACCCCTCTAAAT 58.876 41.667 0.00 0.00 0.00 1.40
4600 4629 4.510571 GCTCATACGAAAACCCCTCTAAA 58.489 43.478 0.00 0.00 0.00 1.85
4601 4630 3.118519 GGCTCATACGAAAACCCCTCTAA 60.119 47.826 0.00 0.00 0.00 2.10
4602 4631 2.433239 GGCTCATACGAAAACCCCTCTA 59.567 50.000 0.00 0.00 0.00 2.43
4603 4632 1.209747 GGCTCATACGAAAACCCCTCT 59.790 52.381 0.00 0.00 0.00 3.69
4604 4633 1.664873 GGCTCATACGAAAACCCCTC 58.335 55.000 0.00 0.00 0.00 4.30
4605 4634 0.255033 GGGCTCATACGAAAACCCCT 59.745 55.000 0.00 0.00 0.00 4.79
4606 4635 0.255033 AGGGCTCATACGAAAACCCC 59.745 55.000 0.00 0.00 38.14 4.95
4607 4636 2.433239 TCTAGGGCTCATACGAAAACCC 59.567 50.000 0.00 0.00 37.63 4.11
4608 4637 3.492829 CCTCTAGGGCTCATACGAAAACC 60.493 52.174 0.00 0.00 0.00 3.27
4609 4638 3.132467 ACCTCTAGGGCTCATACGAAAAC 59.868 47.826 0.20 0.00 40.27 2.43
4610 4639 3.371965 ACCTCTAGGGCTCATACGAAAA 58.628 45.455 0.20 0.00 40.27 2.29
4611 4640 3.028094 ACCTCTAGGGCTCATACGAAA 57.972 47.619 0.20 0.00 40.27 3.46
4612 4641 2.750141 ACCTCTAGGGCTCATACGAA 57.250 50.000 0.20 0.00 40.27 3.85
4613 4642 2.977580 TCTACCTCTAGGGCTCATACGA 59.022 50.000 0.20 0.00 40.27 3.43
4614 4643 3.420300 TCTACCTCTAGGGCTCATACG 57.580 52.381 0.20 0.00 40.27 3.06
4615 4644 3.827876 GGTTCTACCTCTAGGGCTCATAC 59.172 52.174 0.20 0.00 40.27 2.39
4616 4645 3.465966 TGGTTCTACCTCTAGGGCTCATA 59.534 47.826 0.20 0.00 39.58 2.15
4617 4646 2.247635 TGGTTCTACCTCTAGGGCTCAT 59.752 50.000 0.20 0.00 39.58 2.90
4618 4647 1.644337 TGGTTCTACCTCTAGGGCTCA 59.356 52.381 0.20 0.00 39.58 4.26
4619 4648 2.456073 TGGTTCTACCTCTAGGGCTC 57.544 55.000 0.20 0.00 39.58 4.70
4620 4649 3.310193 GAATGGTTCTACCTCTAGGGCT 58.690 50.000 0.20 0.00 39.58 5.19
4655 4721 5.011533 GTGCCATATCTGGAGTAGTTCAGAT 59.988 44.000 22.41 22.41 46.37 2.90
4657 4723 4.100035 TGTGCCATATCTGGAGTAGTTCAG 59.900 45.833 0.32 0.00 46.37 3.02
4659 4725 4.672587 TGTGCCATATCTGGAGTAGTTC 57.327 45.455 0.32 0.00 46.37 3.01
4660 4726 5.435686 TTTGTGCCATATCTGGAGTAGTT 57.564 39.130 0.32 0.00 46.37 2.24
4661 4727 5.371526 CATTTGTGCCATATCTGGAGTAGT 58.628 41.667 0.32 0.00 46.37 2.73
4662 4728 4.758674 CCATTTGTGCCATATCTGGAGTAG 59.241 45.833 0.32 0.00 46.37 2.57
4663 4729 4.165950 ACCATTTGTGCCATATCTGGAGTA 59.834 41.667 0.32 0.00 46.37 2.59
4664 4730 3.053395 ACCATTTGTGCCATATCTGGAGT 60.053 43.478 0.32 0.00 46.37 3.85
4665 4731 3.559069 ACCATTTGTGCCATATCTGGAG 58.441 45.455 0.32 0.00 46.37 3.86
4666 4732 3.202818 AGACCATTTGTGCCATATCTGGA 59.797 43.478 0.32 0.00 46.37 3.86
4667 4733 3.559069 AGACCATTTGTGCCATATCTGG 58.441 45.455 0.00 0.00 46.17 3.86
4670 4736 4.398988 TGACAAGACCATTTGTGCCATATC 59.601 41.667 0.00 0.00 41.15 1.63
4682 4748 7.012661 TCAGATATGCATATGACAAGACCAT 57.987 36.000 23.76 0.00 27.44 3.55
4689 4760 6.157297 TCCATCCATCAGATATGCATATGACA 59.843 38.462 23.76 7.17 35.31 3.58
4710 4781 7.685155 GCAGAATATACCAAGCAAAACATCCAT 60.685 37.037 0.00 0.00 0.00 3.41
4717 4788 4.706476 AGCAGCAGAATATACCAAGCAAAA 59.294 37.500 0.00 0.00 0.00 2.44
4741 4812 6.134535 ACATGGACCAGTAAAAACTCCATA 57.865 37.500 0.00 0.00 35.06 2.74
4950 5280 6.295123 GGCGTGTTAATATATTCAGGAGAGGA 60.295 42.308 0.00 0.00 0.00 3.71
4957 5288 3.743911 TGCCGGCGTGTTAATATATTCAG 59.256 43.478 23.90 0.00 0.00 3.02
5083 5416 4.246458 CCTCTCAAGTGCTAACCAACTAC 58.754 47.826 0.00 0.00 0.00 2.73
5206 5551 0.249073 CACTAGGGGACGATGAAGCG 60.249 60.000 0.00 0.00 37.29 4.68
5373 5719 2.096406 CACGGCGAAATGTCTGCG 59.904 61.111 16.62 0.00 0.00 5.18
5384 5730 1.019278 ATCAGTTGCTTACCACGGCG 61.019 55.000 4.80 4.80 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.