Multiple sequence alignment - TraesCS6D01G335200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G335200 chr6D 100.000 2345 0 0 1 2345 436763952 436761608 0.000000e+00 4331.0
1 TraesCS6D01G335200 chr6A 90.647 2010 140 20 163 2141 584955835 584953843 0.000000e+00 2627.0
2 TraesCS6D01G335200 chr6A 80.628 191 26 7 150 333 615044664 615044850 1.130000e-28 137.0
3 TraesCS6D01G335200 chr6A 80.420 143 14 9 158 290 9376090 9376228 1.920000e-16 97.1
4 TraesCS6D01G335200 chr6B 91.731 1173 69 13 508 1660 660252810 660251646 0.000000e+00 1604.0
5 TraesCS6D01G335200 chr6B 80.292 137 16 10 163 295 141786691 141786820 2.480000e-15 93.5
6 TraesCS6D01G335200 chr6B 83.516 91 13 2 52 140 18086466 18086556 1.490000e-12 84.2
7 TraesCS6D01G335200 chr5B 84.422 199 25 6 150 343 700915925 700915728 8.550000e-45 191.0
8 TraesCS6D01G335200 chr5B 80.102 196 30 5 150 339 665997231 665997039 1.130000e-28 137.0
9 TraesCS6D01G335200 chr3D 82.500 200 26 6 148 340 27661311 27661508 1.440000e-37 167.0
10 TraesCS6D01G335200 chr1D 81.773 203 23 10 150 343 7909704 7909507 8.680000e-35 158.0
11 TraesCS6D01G335200 chr1D 90.278 72 3 3 63 132 467513022 467513091 8.920000e-15 91.6
12 TraesCS6D01G335200 chr5D 81.699 153 22 2 193 339 519198618 519198466 3.160000e-24 122.0
13 TraesCS6D01G335200 chr5D 89.535 86 9 0 52 137 548401804 548401889 2.460000e-20 110.0
14 TraesCS6D01G335200 chr2D 78.680 197 31 8 150 339 13367643 13367451 1.140000e-23 121.0
15 TraesCS6D01G335200 chr2D 85.057 87 10 3 52 137 334080732 334080648 4.150000e-13 86.1
16 TraesCS6D01G335200 chr1A 77.889 199 34 7 150 343 544145127 544144934 5.300000e-22 115.0
17 TraesCS6D01G335200 chr1A 77.778 198 34 7 150 343 544142584 544142393 1.900000e-21 113.0
18 TraesCS6D01G335200 chr3B 87.097 93 11 1 53 145 795548782 795548873 1.150000e-18 104.0
19 TraesCS6D01G335200 chr2B 86.420 81 11 0 65 145 357951496 357951416 3.210000e-14 89.8
20 TraesCS6D01G335200 chr2B 86.076 79 7 4 58 135 749984406 749984331 5.370000e-12 82.4
21 TraesCS6D01G335200 chr4B 85.714 84 11 1 52 135 15425404 15425322 1.150000e-13 87.9
22 TraesCS6D01G335200 chr4A 85.542 83 12 0 65 147 659017870 659017952 1.150000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G335200 chr6D 436761608 436763952 2344 True 4331 4331 100.000 1 2345 1 chr6D.!!$R1 2344
1 TraesCS6D01G335200 chr6A 584953843 584955835 1992 True 2627 2627 90.647 163 2141 1 chr6A.!!$R1 1978
2 TraesCS6D01G335200 chr6B 660251646 660252810 1164 True 1604 1604 91.731 508 1660 1 chr6B.!!$R1 1152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
66 67 0.319555 TTCAGAGTGAGGCGTTTCGG 60.320 55.0 0.0 0.0 0.00 4.30 F
80 81 0.391661 TTTCGGTGCTCAGGCTCATC 60.392 55.0 0.0 0.0 39.59 2.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1206 1229 0.037232 GCCGCCGCCTATCTTTATCT 60.037 55.0 0.00 0.0 0.00 1.98 R
1660 1699 0.179062 CCTCTCTATTGCCTGCGCTT 60.179 55.0 9.73 0.0 35.36 4.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.573869 ATGACGGTCAGCTGACGG 59.426 61.111 38.21 38.21 45.65 4.79
18 19 1.977009 ATGACGGTCAGCTGACGGA 60.977 57.895 43.22 29.94 45.65 4.69
19 20 1.532604 ATGACGGTCAGCTGACGGAA 61.533 55.000 43.22 33.55 45.65 4.30
20 21 1.444553 GACGGTCAGCTGACGGAAG 60.445 63.158 43.22 31.85 45.65 3.46
30 31 1.308998 CTGACGGAAGTGGCAACTTT 58.691 50.000 8.18 0.00 46.84 2.66
31 32 1.002468 CTGACGGAAGTGGCAACTTTG 60.002 52.381 8.18 6.77 46.84 2.77
32 33 1.021968 GACGGAAGTGGCAACTTTGT 58.978 50.000 8.18 10.10 46.84 2.83
33 34 2.215196 GACGGAAGTGGCAACTTTGTA 58.785 47.619 8.18 0.00 46.84 2.41
34 35 1.944709 ACGGAAGTGGCAACTTTGTAC 59.055 47.619 8.18 0.00 46.84 2.90
35 36 1.944024 CGGAAGTGGCAACTTTGTACA 59.056 47.619 8.18 0.00 46.84 2.90
36 37 2.552315 CGGAAGTGGCAACTTTGTACAT 59.448 45.455 8.18 0.00 46.84 2.29
37 38 3.749088 CGGAAGTGGCAACTTTGTACATA 59.251 43.478 8.18 0.00 46.84 2.29
38 39 4.142902 CGGAAGTGGCAACTTTGTACATAG 60.143 45.833 8.18 11.30 46.84 2.23
39 40 4.760204 GGAAGTGGCAACTTTGTACATAGT 59.240 41.667 8.18 12.58 46.84 2.12
40 41 5.334879 GGAAGTGGCAACTTTGTACATAGTG 60.335 44.000 18.09 13.24 46.84 2.74
41 42 3.502211 AGTGGCAACTTTGTACATAGTGC 59.498 43.478 18.09 19.97 30.14 4.40
42 43 3.252215 GTGGCAACTTTGTACATAGTGCA 59.748 43.478 25.83 16.78 37.61 4.57
43 44 3.501828 TGGCAACTTTGTACATAGTGCAG 59.498 43.478 25.83 18.09 37.61 4.41
44 45 3.751175 GGCAACTTTGTACATAGTGCAGA 59.249 43.478 25.83 0.83 28.83 4.26
45 46 4.215399 GGCAACTTTGTACATAGTGCAGAA 59.785 41.667 25.83 7.38 28.83 3.02
46 47 5.106157 GGCAACTTTGTACATAGTGCAGAAT 60.106 40.000 25.83 10.05 28.83 2.40
47 48 6.381801 GCAACTTTGTACATAGTGCAGAATT 58.618 36.000 18.09 0.00 28.83 2.17
48 49 6.863126 GCAACTTTGTACATAGTGCAGAATTT 59.137 34.615 18.09 0.00 28.83 1.82
49 50 7.061094 GCAACTTTGTACATAGTGCAGAATTTC 59.939 37.037 18.09 0.00 28.83 2.17
50 51 7.744087 ACTTTGTACATAGTGCAGAATTTCA 57.256 32.000 16.89 0.00 28.83 2.69
51 52 7.810658 ACTTTGTACATAGTGCAGAATTTCAG 58.189 34.615 16.89 0.00 28.83 3.02
52 53 7.661437 ACTTTGTACATAGTGCAGAATTTCAGA 59.339 33.333 16.89 0.00 28.83 3.27
53 54 7.601073 TTGTACATAGTGCAGAATTTCAGAG 57.399 36.000 0.00 0.00 28.83 3.35
54 55 6.701340 TGTACATAGTGCAGAATTTCAGAGT 58.299 36.000 0.00 0.00 0.00 3.24
55 56 6.591448 TGTACATAGTGCAGAATTTCAGAGTG 59.409 38.462 0.00 0.00 0.00 3.51
56 57 5.798132 ACATAGTGCAGAATTTCAGAGTGA 58.202 37.500 0.00 0.00 0.00 3.41
57 58 5.873712 ACATAGTGCAGAATTTCAGAGTGAG 59.126 40.000 0.00 0.00 0.00 3.51
58 59 3.672808 AGTGCAGAATTTCAGAGTGAGG 58.327 45.455 0.00 0.00 0.00 3.86
59 60 2.161211 GTGCAGAATTTCAGAGTGAGGC 59.839 50.000 0.00 0.00 0.00 4.70
60 61 1.396301 GCAGAATTTCAGAGTGAGGCG 59.604 52.381 0.00 0.00 0.00 5.52
61 62 2.693069 CAGAATTTCAGAGTGAGGCGT 58.307 47.619 0.00 0.00 0.00 5.68
62 63 3.070018 CAGAATTTCAGAGTGAGGCGTT 58.930 45.455 0.00 0.00 0.00 4.84
63 64 3.499918 CAGAATTTCAGAGTGAGGCGTTT 59.500 43.478 0.00 0.00 0.00 3.60
64 65 3.748568 AGAATTTCAGAGTGAGGCGTTTC 59.251 43.478 0.00 0.00 0.00 2.78
65 66 1.497991 TTTCAGAGTGAGGCGTTTCG 58.502 50.000 0.00 0.00 0.00 3.46
66 67 0.319555 TTCAGAGTGAGGCGTTTCGG 60.320 55.000 0.00 0.00 0.00 4.30
67 68 1.006102 CAGAGTGAGGCGTTTCGGT 60.006 57.895 0.00 0.00 0.00 4.69
68 69 1.006102 AGAGTGAGGCGTTTCGGTG 60.006 57.895 0.00 0.00 0.00 4.94
69 70 2.665185 AGTGAGGCGTTTCGGTGC 60.665 61.111 0.00 0.00 0.00 5.01
70 71 2.665185 GTGAGGCGTTTCGGTGCT 60.665 61.111 0.00 0.00 0.00 4.40
71 72 2.357034 TGAGGCGTTTCGGTGCTC 60.357 61.111 0.00 0.00 0.00 4.26
72 73 2.357034 GAGGCGTTTCGGTGCTCA 60.357 61.111 0.00 0.00 0.00 4.26
73 74 2.357517 AGGCGTTTCGGTGCTCAG 60.358 61.111 0.00 0.00 0.00 3.35
74 75 3.423154 GGCGTTTCGGTGCTCAGG 61.423 66.667 0.00 0.00 0.00 3.86
75 76 4.090057 GCGTTTCGGTGCTCAGGC 62.090 66.667 0.00 0.00 39.26 4.85
76 77 2.357517 CGTTTCGGTGCTCAGGCT 60.358 61.111 0.00 0.00 39.59 4.58
77 78 2.383527 CGTTTCGGTGCTCAGGCTC 61.384 63.158 0.00 0.00 39.59 4.70
78 79 1.301716 GTTTCGGTGCTCAGGCTCA 60.302 57.895 0.00 0.00 39.59 4.26
79 80 0.674895 GTTTCGGTGCTCAGGCTCAT 60.675 55.000 0.00 0.00 39.59 2.90
80 81 0.391661 TTTCGGTGCTCAGGCTCATC 60.392 55.000 0.00 0.00 39.59 2.92
81 82 1.260538 TTCGGTGCTCAGGCTCATCT 61.261 55.000 0.00 0.00 39.59 2.90
82 83 1.521010 CGGTGCTCAGGCTCATCTG 60.521 63.158 0.00 0.00 39.59 2.90
83 84 1.818785 GGTGCTCAGGCTCATCTGC 60.819 63.158 0.00 0.00 39.59 4.26
84 85 1.078637 GTGCTCAGGCTCATCTGCA 60.079 57.895 0.00 0.00 39.59 4.41
85 86 1.078637 TGCTCAGGCTCATCTGCAC 60.079 57.895 0.00 0.00 39.59 4.57
86 87 1.818785 GCTCAGGCTCATCTGCACC 60.819 63.158 0.00 0.00 34.91 5.01
87 88 1.153208 CTCAGGCTCATCTGCACCC 60.153 63.158 0.00 0.00 34.91 4.61
88 89 2.513204 CAGGCTCATCTGCACCCG 60.513 66.667 0.00 0.00 34.04 5.28
89 90 3.790437 AGGCTCATCTGCACCCGG 61.790 66.667 0.00 0.00 34.04 5.73
90 91 4.101448 GGCTCATCTGCACCCGGT 62.101 66.667 0.00 0.00 34.04 5.28
91 92 2.512515 GCTCATCTGCACCCGGTC 60.513 66.667 0.00 0.00 0.00 4.79
92 93 2.981302 CTCATCTGCACCCGGTCA 59.019 61.111 0.00 0.00 0.00 4.02
93 94 1.153489 CTCATCTGCACCCGGTCAG 60.153 63.158 0.00 4.93 0.00 3.51
94 95 2.124983 CATCTGCACCCGGTCAGG 60.125 66.667 13.45 0.00 40.63 3.86
95 96 2.284625 ATCTGCACCCGGTCAGGA 60.285 61.111 13.45 2.47 45.00 3.86
96 97 1.918293 ATCTGCACCCGGTCAGGAA 60.918 57.895 13.45 0.00 45.00 3.36
97 98 2.185310 ATCTGCACCCGGTCAGGAAC 62.185 60.000 13.45 0.00 45.00 3.62
98 99 3.164977 TGCACCCGGTCAGGAACA 61.165 61.111 0.00 0.00 45.00 3.18
99 100 2.112297 GCACCCGGTCAGGAACAA 59.888 61.111 0.00 0.00 45.00 2.83
100 101 1.527380 GCACCCGGTCAGGAACAAA 60.527 57.895 0.00 0.00 45.00 2.83
101 102 1.104577 GCACCCGGTCAGGAACAAAA 61.105 55.000 0.00 0.00 45.00 2.44
102 103 1.616159 CACCCGGTCAGGAACAAAAT 58.384 50.000 0.00 0.00 45.00 1.82
103 104 1.539827 CACCCGGTCAGGAACAAAATC 59.460 52.381 0.00 0.00 45.00 2.17
104 105 1.144093 ACCCGGTCAGGAACAAAATCA 59.856 47.619 0.00 0.00 45.00 2.57
105 106 1.812571 CCCGGTCAGGAACAAAATCAG 59.187 52.381 0.00 0.00 45.00 2.90
106 107 2.552155 CCCGGTCAGGAACAAAATCAGA 60.552 50.000 0.00 0.00 45.00 3.27
107 108 3.146066 CCGGTCAGGAACAAAATCAGAA 58.854 45.455 0.00 0.00 45.00 3.02
108 109 3.058224 CCGGTCAGGAACAAAATCAGAAC 60.058 47.826 0.00 0.00 45.00 3.01
109 110 3.563808 CGGTCAGGAACAAAATCAGAACA 59.436 43.478 0.00 0.00 0.00 3.18
110 111 4.036262 CGGTCAGGAACAAAATCAGAACAA 59.964 41.667 0.00 0.00 0.00 2.83
111 112 5.523369 GGTCAGGAACAAAATCAGAACAAG 58.477 41.667 0.00 0.00 0.00 3.16
112 113 5.067805 GGTCAGGAACAAAATCAGAACAAGT 59.932 40.000 0.00 0.00 0.00 3.16
113 114 6.262273 GGTCAGGAACAAAATCAGAACAAGTA 59.738 38.462 0.00 0.00 0.00 2.24
114 115 7.132863 GTCAGGAACAAAATCAGAACAAGTAC 58.867 38.462 0.00 0.00 0.00 2.73
115 116 7.012421 GTCAGGAACAAAATCAGAACAAGTACT 59.988 37.037 0.00 0.00 0.00 2.73
116 117 8.208224 TCAGGAACAAAATCAGAACAAGTACTA 58.792 33.333 0.00 0.00 0.00 1.82
117 118 8.499162 CAGGAACAAAATCAGAACAAGTACTAG 58.501 37.037 0.00 0.00 0.00 2.57
118 119 8.429641 AGGAACAAAATCAGAACAAGTACTAGA 58.570 33.333 0.00 0.00 0.00 2.43
119 120 9.052759 GGAACAAAATCAGAACAAGTACTAGAA 57.947 33.333 0.00 0.00 0.00 2.10
210 211 8.859090 AGTTGTTTAGATGTCCAAATGATTTGA 58.141 29.630 18.82 0.00 43.26 2.69
217 218 8.556213 AGATGTCCAAATGATTTGAAAATTGG 57.444 30.769 18.82 1.54 43.26 3.16
219 220 9.169592 GATGTCCAAATGATTTGAAAATTGGAT 57.830 29.630 18.82 6.24 43.26 3.41
220 221 8.550710 TGTCCAAATGATTTGAAAATTGGATC 57.449 30.769 18.82 11.83 43.26 3.36
230 231 5.627499 TGAAAATTGGATCGAACCTCAAG 57.373 39.130 13.40 0.00 0.00 3.02
248 255 4.503910 TCAAGCATATCTACCACACACAC 58.496 43.478 0.00 0.00 0.00 3.82
316 323 4.100084 TCGGGATGGGTGCAGCTG 62.100 66.667 16.65 10.11 0.00 4.24
349 356 5.661458 TCAGAAGTGGATTACCGAGAATTC 58.339 41.667 0.00 0.00 39.42 2.17
362 369 5.300752 ACCGAGAATTCCAGTGCTATATTG 58.699 41.667 0.65 0.00 0.00 1.90
363 370 5.070446 ACCGAGAATTCCAGTGCTATATTGA 59.930 40.000 0.65 0.00 0.00 2.57
400 407 4.094887 GTGACATCTGAACATACGCCAATT 59.905 41.667 0.00 0.00 0.00 2.32
446 453 5.292589 ACGATAGAAAATAAATTGACGGCGT 59.707 36.000 14.65 14.65 41.38 5.68
491 499 0.463295 ATCTTCACCGCATCTGCAGG 60.463 55.000 15.13 0.00 42.21 4.85
534 542 5.278364 CCTTTTGCAGATAGATTCATGAGCC 60.278 44.000 0.00 0.00 0.00 4.70
535 543 4.701651 TTGCAGATAGATTCATGAGCCT 57.298 40.909 0.00 0.00 0.00 4.58
538 546 4.590222 TGCAGATAGATTCATGAGCCTACA 59.410 41.667 7.91 1.40 0.00 2.74
541 549 5.632764 CAGATAGATTCATGAGCCTACAACG 59.367 44.000 7.91 0.00 0.00 4.10
545 554 0.608130 TCATGAGCCTACAACGCACT 59.392 50.000 0.00 0.00 0.00 4.40
552 561 0.865769 CCTACAACGCACTTGTCCAC 59.134 55.000 0.10 0.00 42.49 4.02
774 793 2.732094 GCTGCCTTGCTGCGTTTG 60.732 61.111 2.22 0.00 42.83 2.93
775 794 2.732094 CTGCCTTGCTGCGTTTGC 60.732 61.111 0.00 0.00 43.20 3.68
916 936 2.830923 CACCAAGAGAGTCAGACCAGAT 59.169 50.000 0.00 0.00 0.00 2.90
927 947 1.325640 CAGACCAGATGCGAAATCACG 59.674 52.381 0.00 0.00 0.00 4.35
952 973 6.322491 GTTAAGACCATAGGCAAAATCACAC 58.678 40.000 0.00 0.00 0.00 3.82
992 1015 3.428862 CGAAAGCACAAGAAACCAAAGGT 60.429 43.478 0.00 0.00 37.65 3.50
1215 1241 2.555199 GCACGGCTCACAGATAAAGAT 58.445 47.619 0.00 0.00 0.00 2.40
1224 1250 1.000955 ACAGATAAAGATAGGCGGCGG 59.999 52.381 9.78 0.00 0.00 6.13
1278 1307 2.597217 TTTGAAGGGTGCCTGCCG 60.597 61.111 0.00 0.00 32.13 5.69
1341 1370 3.572682 TCGTTTGCTACTTCAGAGGAGAA 59.427 43.478 0.00 0.00 35.72 2.87
1342 1371 4.220821 TCGTTTGCTACTTCAGAGGAGAAT 59.779 41.667 0.00 0.00 35.72 2.40
1343 1372 4.328440 CGTTTGCTACTTCAGAGGAGAATG 59.672 45.833 0.00 0.00 35.72 2.67
1344 1373 5.482908 GTTTGCTACTTCAGAGGAGAATGA 58.517 41.667 0.00 0.00 35.72 2.57
1345 1374 5.946942 TTGCTACTTCAGAGGAGAATGAT 57.053 39.130 0.00 0.00 35.72 2.45
1346 1375 5.273674 TGCTACTTCAGAGGAGAATGATG 57.726 43.478 0.00 0.00 35.72 3.07
1347 1376 4.958581 TGCTACTTCAGAGGAGAATGATGA 59.041 41.667 0.00 0.00 35.72 2.92
1386 1419 6.071616 GGCAAACATTTACCTAGTGGAAATCA 60.072 38.462 0.00 0.00 37.04 2.57
1461 1494 1.643868 TTGCACCGATGATTCACCGC 61.644 55.000 0.00 0.00 0.00 5.68
1502 1535 5.438761 AGCACACAGAAACAGGTAAAATC 57.561 39.130 0.00 0.00 0.00 2.17
1528 1561 4.217550 ACGGTTGTCCTATGAAAACAATGG 59.782 41.667 3.80 0.00 40.01 3.16
1532 1565 6.207810 GGTTGTCCTATGAAAACAATGGTACA 59.792 38.462 3.80 0.00 41.03 2.90
1582 1617 9.964253 GATCTTCATAACTGTAATAATGATGCG 57.036 33.333 0.00 0.00 0.00 4.73
1584 1619 8.147704 TCTTCATAACTGTAATAATGATGCGGA 58.852 33.333 0.00 0.00 0.00 5.54
1590 1625 5.822519 ACTGTAATAATGATGCGGACACATT 59.177 36.000 13.56 13.56 37.82 2.71
1597 1632 1.175654 ATGCGGACACATTTGCATCA 58.824 45.000 0.00 0.00 44.21 3.07
1598 1633 1.175654 TGCGGACACATTTGCATCAT 58.824 45.000 0.00 0.00 31.31 2.45
1599 1634 1.132834 TGCGGACACATTTGCATCATC 59.867 47.619 0.00 0.00 31.31 2.92
1600 1635 1.132834 GCGGACACATTTGCATCATCA 59.867 47.619 0.00 0.00 0.00 3.07
1601 1636 2.789208 CGGACACATTTGCATCATCAC 58.211 47.619 0.00 0.00 0.00 3.06
1650 1689 9.383519 TGCCTGAAAAACATACTAAGATAGAAG 57.616 33.333 0.00 0.00 0.00 2.85
1663 1702 8.202745 ACTAAGATAGAAGCACAAATGTAAGC 57.797 34.615 0.00 0.00 0.00 3.09
1664 1703 5.725110 AGATAGAAGCACAAATGTAAGCG 57.275 39.130 0.00 0.00 0.00 4.68
1673 1713 2.752354 ACAAATGTAAGCGCAGGCAATA 59.248 40.909 11.47 0.00 43.41 1.90
1674 1714 3.181497 ACAAATGTAAGCGCAGGCAATAG 60.181 43.478 11.47 0.00 43.41 1.73
1678 1718 2.131183 GTAAGCGCAGGCAATAGAGAG 58.869 52.381 11.47 0.00 43.41 3.20
1679 1719 0.179062 AAGCGCAGGCAATAGAGAGG 60.179 55.000 11.47 0.00 43.41 3.69
1681 1721 1.144716 CGCAGGCAATAGAGAGGCA 59.855 57.895 0.00 0.00 0.00 4.75
1683 1723 0.534652 GCAGGCAATAGAGAGGCAGG 60.535 60.000 0.00 0.00 0.00 4.85
1687 1727 1.210478 GGCAATAGAGAGGCAGGTGAA 59.790 52.381 0.00 0.00 0.00 3.18
1691 1731 5.312079 GCAATAGAGAGGCAGGTGAAATAT 58.688 41.667 0.00 0.00 0.00 1.28
1709 1749 9.065871 GTGAAATATACAAACATTGCTCTTGAC 57.934 33.333 1.92 0.00 0.00 3.18
1785 1825 4.434713 AAACACGCCACCAATATCTTTC 57.565 40.909 0.00 0.00 0.00 2.62
1792 1832 3.627237 GCCACCAATATCTTTCCCTGGAA 60.627 47.826 0.00 0.00 0.00 3.53
1833 1873 6.586463 TGATGAAAACGAGAACTACATGTCTC 59.414 38.462 0.00 1.45 0.00 3.36
1839 1880 4.155099 ACGAGAACTACATGTCTCAGTCTG 59.845 45.833 0.00 0.00 0.00 3.51
1903 1944 5.625656 GCTTGGTAGACAGTAGAAGCTCAAT 60.626 44.000 0.00 0.00 34.34 2.57
1917 1958 1.751733 GCTCAATCCTTGCTATGGCCA 60.752 52.381 8.56 8.56 37.74 5.36
1929 1970 2.943199 GCTATGGCCAGCAAAGAAGTCT 60.943 50.000 13.05 0.00 41.40 3.24
1931 1972 2.479566 TGGCCAGCAAAGAAGTCTAG 57.520 50.000 0.00 0.00 0.00 2.43
1934 1975 3.326588 TGGCCAGCAAAGAAGTCTAGTAA 59.673 43.478 0.00 0.00 0.00 2.24
1937 1978 5.178797 GCCAGCAAAGAAGTCTAGTAATCA 58.821 41.667 0.00 0.00 0.00 2.57
1940 1981 6.092807 CCAGCAAAGAAGTCTAGTAATCAACC 59.907 42.308 0.00 0.00 0.00 3.77
1975 2016 2.196749 CAGCAACGAGGTATACTGCAG 58.803 52.381 13.48 13.48 35.44 4.41
2019 2060 8.451908 AAGGACATACATTTCCATTAGCTAAC 57.548 34.615 8.70 0.00 33.92 2.34
2021 2062 6.998673 GGACATACATTTCCATTAGCTAACCT 59.001 38.462 8.70 0.00 0.00 3.50
2039 2080 6.128254 GCTAACCTGAAAATGAACAGTACTCC 60.128 42.308 0.00 0.00 32.93 3.85
2051 2092 5.468746 TGAACAGTACTCCTTAACAATGTGC 59.531 40.000 0.00 0.00 0.00 4.57
2054 2095 1.890876 ACTCCTTAACAATGTGCGCA 58.109 45.000 5.66 5.66 0.00 6.09
2055 2096 2.436417 ACTCCTTAACAATGTGCGCAT 58.564 42.857 15.91 7.01 36.80 4.73
2060 2101 5.179533 TCCTTAACAATGTGCGCATAGTTA 58.820 37.500 15.91 16.77 34.39 2.24
2061 2102 5.064198 TCCTTAACAATGTGCGCATAGTTAC 59.936 40.000 15.91 0.00 34.39 2.50
2062 2103 5.163804 CCTTAACAATGTGCGCATAGTTACA 60.164 40.000 15.91 5.86 34.39 2.41
2064 2105 2.095853 ACAATGTGCGCATAGTTACAGC 59.904 45.455 15.91 0.00 34.39 4.40
2080 2121 6.418101 AGTTACAGCACATATCCATGAGTTT 58.582 36.000 0.00 0.00 35.96 2.66
2081 2122 6.317140 AGTTACAGCACATATCCATGAGTTTG 59.683 38.462 0.00 0.00 35.96 2.93
2089 2130 7.546667 GCACATATCCATGAGTTTGACAATTTT 59.453 33.333 0.00 0.00 35.96 1.82
2103 2146 7.750229 TTGACAATTTTCTGAGTGAGCTAAT 57.250 32.000 0.00 0.00 0.00 1.73
2107 2150 7.945134 ACAATTTTCTGAGTGAGCTAATTTGT 58.055 30.769 0.00 0.00 0.00 2.83
2114 2157 6.890268 TCTGAGTGAGCTAATTTGTAGGAGTA 59.110 38.462 0.00 0.00 0.00 2.59
2144 2187 7.916914 AATAAATAGTCCACATATTACCGGC 57.083 36.000 0.00 0.00 0.00 6.13
2145 2188 3.587797 ATAGTCCACATATTACCGGCG 57.412 47.619 0.00 0.00 0.00 6.46
2146 2189 0.249741 AGTCCACATATTACCGGCGC 60.250 55.000 0.00 0.00 0.00 6.53
2147 2190 0.531090 GTCCACATATTACCGGCGCA 60.531 55.000 10.83 0.00 0.00 6.09
2148 2191 0.178301 TCCACATATTACCGGCGCAA 59.822 50.000 10.83 0.00 0.00 4.85
2149 2192 1.018148 CCACATATTACCGGCGCAAA 58.982 50.000 10.83 0.00 0.00 3.68
2150 2193 1.402259 CCACATATTACCGGCGCAAAA 59.598 47.619 10.83 0.00 0.00 2.44
2151 2194 2.034053 CCACATATTACCGGCGCAAAAT 59.966 45.455 10.83 5.37 0.00 1.82
2152 2195 3.296628 CACATATTACCGGCGCAAAATC 58.703 45.455 10.83 0.00 0.00 2.17
2153 2196 2.292292 ACATATTACCGGCGCAAAATCC 59.708 45.455 10.83 0.00 0.00 3.01
2154 2197 2.039818 TATTACCGGCGCAAAATCCA 57.960 45.000 10.83 0.00 0.00 3.41
2155 2198 1.398692 ATTACCGGCGCAAAATCCAT 58.601 45.000 10.83 0.00 0.00 3.41
2156 2199 1.178276 TTACCGGCGCAAAATCCATT 58.822 45.000 10.83 0.00 0.00 3.16
2157 2200 0.736053 TACCGGCGCAAAATCCATTC 59.264 50.000 10.83 0.00 0.00 2.67
2158 2201 1.247419 ACCGGCGCAAAATCCATTCA 61.247 50.000 10.83 0.00 0.00 2.57
2159 2202 0.801836 CCGGCGCAAAATCCATTCAC 60.802 55.000 10.83 0.00 0.00 3.18
2160 2203 0.109365 CGGCGCAAAATCCATTCACA 60.109 50.000 10.83 0.00 0.00 3.58
2161 2204 1.632422 GGCGCAAAATCCATTCACAG 58.368 50.000 10.83 0.00 0.00 3.66
2162 2205 0.994263 GCGCAAAATCCATTCACAGC 59.006 50.000 0.30 0.00 0.00 4.40
2163 2206 1.669502 GCGCAAAATCCATTCACAGCA 60.670 47.619 0.30 0.00 0.00 4.41
2164 2207 2.883574 CGCAAAATCCATTCACAGCAT 58.116 42.857 0.00 0.00 0.00 3.79
2165 2208 2.855963 CGCAAAATCCATTCACAGCATC 59.144 45.455 0.00 0.00 0.00 3.91
2166 2209 3.673866 CGCAAAATCCATTCACAGCATCA 60.674 43.478 0.00 0.00 0.00 3.07
2167 2210 4.247258 GCAAAATCCATTCACAGCATCAA 58.753 39.130 0.00 0.00 0.00 2.57
2168 2211 4.873827 GCAAAATCCATTCACAGCATCAAT 59.126 37.500 0.00 0.00 0.00 2.57
2169 2212 5.006358 GCAAAATCCATTCACAGCATCAATC 59.994 40.000 0.00 0.00 0.00 2.67
2170 2213 5.925506 AAATCCATTCACAGCATCAATCA 57.074 34.783 0.00 0.00 0.00 2.57
2171 2214 5.515797 AATCCATTCACAGCATCAATCAG 57.484 39.130 0.00 0.00 0.00 2.90
2172 2215 4.224991 TCCATTCACAGCATCAATCAGA 57.775 40.909 0.00 0.00 0.00 3.27
2173 2216 4.788679 TCCATTCACAGCATCAATCAGAT 58.211 39.130 0.00 0.00 37.48 2.90
2174 2217 4.820173 TCCATTCACAGCATCAATCAGATC 59.180 41.667 0.00 0.00 33.72 2.75
2175 2218 4.822350 CCATTCACAGCATCAATCAGATCT 59.178 41.667 0.00 0.00 33.72 2.75
2176 2219 5.995897 CCATTCACAGCATCAATCAGATCTA 59.004 40.000 0.00 0.00 33.72 1.98
2177 2220 6.485648 CCATTCACAGCATCAATCAGATCTAA 59.514 38.462 0.00 0.00 33.72 2.10
2178 2221 7.175119 CCATTCACAGCATCAATCAGATCTAAT 59.825 37.037 0.00 0.00 33.72 1.73
2179 2222 9.216117 CATTCACAGCATCAATCAGATCTAATA 57.784 33.333 0.00 0.00 33.72 0.98
2180 2223 8.599055 TTCACAGCATCAATCAGATCTAATAC 57.401 34.615 0.00 0.00 33.72 1.89
2181 2224 7.157347 TCACAGCATCAATCAGATCTAATACC 58.843 38.462 0.00 0.00 33.72 2.73
2182 2225 6.932960 CACAGCATCAATCAGATCTAATACCA 59.067 38.462 0.00 0.00 33.72 3.25
2183 2226 7.606839 CACAGCATCAATCAGATCTAATACCAT 59.393 37.037 0.00 0.00 33.72 3.55
2184 2227 8.819845 ACAGCATCAATCAGATCTAATACCATA 58.180 33.333 0.00 0.00 33.72 2.74
2185 2228 9.662947 CAGCATCAATCAGATCTAATACCATAA 57.337 33.333 0.00 0.00 33.72 1.90
2204 2247 8.353423 ACCATAAATAATCAACAGAAGCAACT 57.647 30.769 0.00 0.00 0.00 3.16
2205 2248 8.806146 ACCATAAATAATCAACAGAAGCAACTT 58.194 29.630 0.00 0.00 0.00 2.66
2206 2249 9.294030 CCATAAATAATCAACAGAAGCAACTTC 57.706 33.333 0.00 0.00 40.45 3.01
2207 2250 9.844790 CATAAATAATCAACAGAAGCAACTTCA 57.155 29.630 9.80 0.00 42.37 3.02
2210 2253 9.598517 AAATAATCAACAGAAGCAACTTCAAAA 57.401 25.926 9.80 0.00 42.37 2.44
2211 2254 9.768662 AATAATCAACAGAAGCAACTTCAAAAT 57.231 25.926 9.80 0.00 42.37 1.82
2214 2257 9.598517 AATCAACAGAAGCAACTTCAAAATAAA 57.401 25.926 9.80 0.00 42.37 1.40
2215 2258 9.768662 ATCAACAGAAGCAACTTCAAAATAAAT 57.231 25.926 9.80 0.00 42.37 1.40
2216 2259 9.598517 TCAACAGAAGCAACTTCAAAATAAATT 57.401 25.926 9.80 0.00 42.37 1.82
2237 2280 8.828688 AAATTACTTACAGACAGTGGACTTAC 57.171 34.615 0.00 0.00 0.00 2.34
2238 2281 6.964807 TTACTTACAGACAGTGGACTTACA 57.035 37.500 0.00 0.00 0.00 2.41
2239 2282 7.534723 TTACTTACAGACAGTGGACTTACAT 57.465 36.000 0.00 0.00 0.00 2.29
2240 2283 8.640063 TTACTTACAGACAGTGGACTTACATA 57.360 34.615 0.00 0.00 0.00 2.29
2241 2284 7.719871 ACTTACAGACAGTGGACTTACATAT 57.280 36.000 0.00 0.00 0.00 1.78
2242 2285 8.818622 ACTTACAGACAGTGGACTTACATATA 57.181 34.615 0.00 0.00 0.00 0.86
2243 2286 9.422681 ACTTACAGACAGTGGACTTACATATAT 57.577 33.333 0.00 0.00 0.00 0.86
2246 2289 8.306313 ACAGACAGTGGACTTACATATATTCA 57.694 34.615 0.00 0.00 0.00 2.57
2247 2290 8.928448 ACAGACAGTGGACTTACATATATTCAT 58.072 33.333 0.00 0.00 0.00 2.57
2248 2291 9.770097 CAGACAGTGGACTTACATATATTCATT 57.230 33.333 0.00 0.00 0.00 2.57
2251 2294 9.342308 ACAGTGGACTTACATATATTCATTTGG 57.658 33.333 0.00 0.00 0.00 3.28
2252 2295 9.559732 CAGTGGACTTACATATATTCATTTGGA 57.440 33.333 0.00 0.00 0.00 3.53
2253 2296 9.561069 AGTGGACTTACATATATTCATTTGGAC 57.439 33.333 0.00 0.00 0.00 4.02
2254 2297 9.337396 GTGGACTTACATATATTCATTTGGACA 57.663 33.333 0.00 0.00 0.00 4.02
2255 2298 9.913310 TGGACTTACATATATTCATTTGGACAA 57.087 29.630 0.00 0.00 0.00 3.18
2265 2308 8.731275 ATATTCATTTGGACAAATCAGTACGA 57.269 30.769 7.28 0.00 38.84 3.43
2266 2309 7.630242 ATTCATTTGGACAAATCAGTACGAT 57.370 32.000 7.28 0.00 38.84 3.73
2267 2310 6.421377 TCATTTGGACAAATCAGTACGATG 57.579 37.500 7.28 0.00 38.84 3.84
2268 2311 6.169800 TCATTTGGACAAATCAGTACGATGA 58.830 36.000 7.28 0.00 38.84 2.92
2269 2312 6.652900 TCATTTGGACAAATCAGTACGATGAA 59.347 34.615 7.28 0.00 38.84 2.57
2270 2313 6.480524 TTTGGACAAATCAGTACGATGAAG 57.519 37.500 0.00 0.00 33.40 3.02
2271 2314 5.400066 TGGACAAATCAGTACGATGAAGA 57.600 39.130 0.00 0.00 33.40 2.87
2272 2315 5.977635 TGGACAAATCAGTACGATGAAGAT 58.022 37.500 0.00 0.00 33.40 2.40
2273 2316 7.107639 TGGACAAATCAGTACGATGAAGATA 57.892 36.000 0.00 0.00 33.40 1.98
2274 2317 7.552459 TGGACAAATCAGTACGATGAAGATAA 58.448 34.615 0.00 0.00 33.40 1.75
2275 2318 7.706607 TGGACAAATCAGTACGATGAAGATAAG 59.293 37.037 0.00 0.00 33.40 1.73
2276 2319 7.169982 GGACAAATCAGTACGATGAAGATAAGG 59.830 40.741 0.00 0.00 33.40 2.69
2277 2320 7.782049 ACAAATCAGTACGATGAAGATAAGGA 58.218 34.615 0.00 0.00 33.40 3.36
2278 2321 8.424918 ACAAATCAGTACGATGAAGATAAGGAT 58.575 33.333 0.00 0.00 33.40 3.24
2279 2322 8.706936 CAAATCAGTACGATGAAGATAAGGATG 58.293 37.037 0.00 0.00 33.40 3.51
2280 2323 6.961360 TCAGTACGATGAAGATAAGGATGT 57.039 37.500 0.00 0.00 0.00 3.06
2281 2324 6.739112 TCAGTACGATGAAGATAAGGATGTG 58.261 40.000 0.00 0.00 0.00 3.21
2282 2325 5.923114 CAGTACGATGAAGATAAGGATGTGG 59.077 44.000 0.00 0.00 0.00 4.17
2283 2326 5.833667 AGTACGATGAAGATAAGGATGTGGA 59.166 40.000 0.00 0.00 0.00 4.02
2284 2327 5.815233 ACGATGAAGATAAGGATGTGGAT 57.185 39.130 0.00 0.00 0.00 3.41
2285 2328 5.545588 ACGATGAAGATAAGGATGTGGATG 58.454 41.667 0.00 0.00 0.00 3.51
2286 2329 4.934001 CGATGAAGATAAGGATGTGGATGG 59.066 45.833 0.00 0.00 0.00 3.51
2287 2330 4.712051 TGAAGATAAGGATGTGGATGGG 57.288 45.455 0.00 0.00 0.00 4.00
2288 2331 3.395607 TGAAGATAAGGATGTGGATGGGG 59.604 47.826 0.00 0.00 0.00 4.96
2289 2332 3.367280 AGATAAGGATGTGGATGGGGA 57.633 47.619 0.00 0.00 0.00 4.81
2290 2333 3.680169 AGATAAGGATGTGGATGGGGAA 58.320 45.455 0.00 0.00 0.00 3.97
2291 2334 3.654806 AGATAAGGATGTGGATGGGGAAG 59.345 47.826 0.00 0.00 0.00 3.46
2292 2335 1.686236 AAGGATGTGGATGGGGAAGT 58.314 50.000 0.00 0.00 0.00 3.01
2293 2336 0.921896 AGGATGTGGATGGGGAAGTG 59.078 55.000 0.00 0.00 0.00 3.16
2294 2337 0.106519 GGATGTGGATGGGGAAGTGG 60.107 60.000 0.00 0.00 0.00 4.00
2295 2338 0.753111 GATGTGGATGGGGAAGTGGC 60.753 60.000 0.00 0.00 0.00 5.01
2296 2339 2.438434 GTGGATGGGGAAGTGGCG 60.438 66.667 0.00 0.00 0.00 5.69
2297 2340 4.424711 TGGATGGGGAAGTGGCGC 62.425 66.667 0.00 0.00 0.00 6.53
2301 2344 4.738998 TGGGGAAGTGGCGCCATG 62.739 66.667 35.23 0.00 44.78 3.66
2302 2345 4.424711 GGGGAAGTGGCGCCATGA 62.425 66.667 35.23 6.64 40.36 3.07
2303 2346 2.361104 GGGAAGTGGCGCCATGAA 60.361 61.111 35.23 6.15 0.00 2.57
2304 2347 2.409870 GGGAAGTGGCGCCATGAAG 61.410 63.158 35.23 0.00 0.00 3.02
2305 2348 2.486966 GAAGTGGCGCCATGAAGC 59.513 61.111 35.23 19.78 0.00 3.86
2306 2349 2.034687 AAGTGGCGCCATGAAGCT 59.965 55.556 35.23 21.98 0.00 3.74
2307 2350 0.744414 GAAGTGGCGCCATGAAGCTA 60.744 55.000 35.23 2.76 0.00 3.32
2308 2351 0.322456 AAGTGGCGCCATGAAGCTAA 60.322 50.000 35.23 1.82 0.00 3.09
2309 2352 0.107017 AGTGGCGCCATGAAGCTAAT 60.107 50.000 35.23 1.96 0.00 1.73
2310 2353 0.740737 GTGGCGCCATGAAGCTAATT 59.259 50.000 35.23 0.00 0.00 1.40
2311 2354 0.740149 TGGCGCCATGAAGCTAATTG 59.260 50.000 29.03 0.00 0.00 2.32
2312 2355 0.595825 GGCGCCATGAAGCTAATTGC 60.596 55.000 24.80 0.00 43.29 3.56
2324 2367 2.195922 GCTAATTGCTTGGAATTGCCG 58.804 47.619 9.76 1.39 37.95 5.69
2325 2368 2.159254 GCTAATTGCTTGGAATTGCCGA 60.159 45.455 9.76 0.00 37.95 5.54
2327 2370 0.819582 ATTGCTTGGAATTGCCGAGG 59.180 50.000 0.00 0.00 46.81 4.63
2328 2371 1.876497 TTGCTTGGAATTGCCGAGGC 61.876 55.000 7.26 7.26 46.81 4.70
2338 2381 2.348998 GCCGAGGCATGGATAGGG 59.651 66.667 9.58 0.00 41.49 3.53
2339 2382 3.072476 CCGAGGCATGGATAGGGG 58.928 66.667 0.00 0.00 0.00 4.79
2340 2383 1.843376 CCGAGGCATGGATAGGGGT 60.843 63.158 0.00 0.00 0.00 4.95
2341 2384 1.674057 CGAGGCATGGATAGGGGTC 59.326 63.158 0.00 0.00 0.00 4.46
2342 2385 0.833834 CGAGGCATGGATAGGGGTCT 60.834 60.000 0.00 0.00 0.00 3.85
2343 2386 0.980423 GAGGCATGGATAGGGGTCTC 59.020 60.000 0.00 0.00 0.00 3.36
2344 2387 0.833834 AGGCATGGATAGGGGTCTCG 60.834 60.000 0.00 0.00 0.00 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.532604 TTCCGTCAGCTGACCGTCAT 61.533 55.000 35.07 0.00 41.86 3.06
2 3 1.444553 CTTCCGTCAGCTGACCGTC 60.445 63.158 35.07 15.67 41.86 4.79
3 4 2.201022 ACTTCCGTCAGCTGACCGT 61.201 57.895 35.07 24.50 41.86 4.83
4 5 1.734477 CACTTCCGTCAGCTGACCG 60.734 63.158 35.07 29.45 41.86 4.79
5 6 1.374758 CCACTTCCGTCAGCTGACC 60.375 63.158 35.07 20.42 41.86 4.02
6 7 2.029844 GCCACTTCCGTCAGCTGAC 61.030 63.158 32.73 32.73 41.47 3.51
7 8 2.038814 TTGCCACTTCCGTCAGCTGA 62.039 55.000 13.74 13.74 0.00 4.26
8 9 1.597854 TTGCCACTTCCGTCAGCTG 60.598 57.895 7.63 7.63 0.00 4.24
9 10 1.598130 GTTGCCACTTCCGTCAGCT 60.598 57.895 0.00 0.00 0.00 4.24
10 11 1.166531 AAGTTGCCACTTCCGTCAGC 61.167 55.000 0.00 0.00 39.15 4.26
11 12 1.002468 CAAAGTTGCCACTTCCGTCAG 60.002 52.381 3.30 0.00 42.89 3.51
12 13 1.021202 CAAAGTTGCCACTTCCGTCA 58.979 50.000 3.30 0.00 42.89 4.35
13 14 1.021968 ACAAAGTTGCCACTTCCGTC 58.978 50.000 3.30 0.00 42.89 4.79
14 15 1.944709 GTACAAAGTTGCCACTTCCGT 59.055 47.619 3.30 7.20 42.89 4.69
15 16 1.944024 TGTACAAAGTTGCCACTTCCG 59.056 47.619 3.30 1.45 42.89 4.30
16 17 4.760204 ACTATGTACAAAGTTGCCACTTCC 59.240 41.667 3.30 0.00 42.89 3.46
17 18 5.689819 CACTATGTACAAAGTTGCCACTTC 58.310 41.667 3.30 0.00 42.89 3.01
18 19 4.023193 GCACTATGTACAAAGTTGCCACTT 60.023 41.667 0.00 0.00 45.89 3.16
19 20 3.502211 GCACTATGTACAAAGTTGCCACT 59.498 43.478 0.00 0.00 33.11 4.00
20 21 3.252215 TGCACTATGTACAAAGTTGCCAC 59.748 43.478 15.46 0.00 0.00 5.01
21 22 3.481453 TGCACTATGTACAAAGTTGCCA 58.519 40.909 15.46 5.47 0.00 4.92
22 23 3.751175 TCTGCACTATGTACAAAGTTGCC 59.249 43.478 15.46 3.61 0.00 4.52
23 24 5.356882 TTCTGCACTATGTACAAAGTTGC 57.643 39.130 0.00 7.37 0.00 4.17
24 25 8.075574 TGAAATTCTGCACTATGTACAAAGTTG 58.924 33.333 0.00 0.00 0.00 3.16
25 26 8.165239 TGAAATTCTGCACTATGTACAAAGTT 57.835 30.769 0.00 0.00 0.00 2.66
26 27 7.661437 TCTGAAATTCTGCACTATGTACAAAGT 59.339 33.333 0.00 0.00 0.00 2.66
27 28 8.032952 TCTGAAATTCTGCACTATGTACAAAG 57.967 34.615 0.00 0.00 0.00 2.77
28 29 7.661437 ACTCTGAAATTCTGCACTATGTACAAA 59.339 33.333 0.00 0.00 0.00 2.83
29 30 7.118245 CACTCTGAAATTCTGCACTATGTACAA 59.882 37.037 0.00 0.00 0.00 2.41
30 31 6.591448 CACTCTGAAATTCTGCACTATGTACA 59.409 38.462 0.00 0.00 0.00 2.90
31 32 6.813649 TCACTCTGAAATTCTGCACTATGTAC 59.186 38.462 0.00 0.00 0.00 2.90
32 33 6.935167 TCACTCTGAAATTCTGCACTATGTA 58.065 36.000 0.00 0.00 0.00 2.29
33 34 5.798132 TCACTCTGAAATTCTGCACTATGT 58.202 37.500 0.00 0.00 0.00 2.29
34 35 5.293814 CCTCACTCTGAAATTCTGCACTATG 59.706 44.000 0.00 0.00 0.00 2.23
35 36 5.426504 CCTCACTCTGAAATTCTGCACTAT 58.573 41.667 0.00 0.00 0.00 2.12
36 37 4.825422 CCTCACTCTGAAATTCTGCACTA 58.175 43.478 0.00 0.00 0.00 2.74
37 38 3.672808 CCTCACTCTGAAATTCTGCACT 58.327 45.455 0.00 0.00 0.00 4.40
38 39 2.161211 GCCTCACTCTGAAATTCTGCAC 59.839 50.000 0.00 0.00 0.00 4.57
39 40 2.430465 GCCTCACTCTGAAATTCTGCA 58.570 47.619 0.00 0.00 0.00 4.41
40 41 1.396301 CGCCTCACTCTGAAATTCTGC 59.604 52.381 0.00 0.00 0.00 4.26
41 42 2.693069 ACGCCTCACTCTGAAATTCTG 58.307 47.619 0.00 0.00 0.00 3.02
42 43 3.409026 AACGCCTCACTCTGAAATTCT 57.591 42.857 0.00 0.00 0.00 2.40
43 44 3.423645 CGAAACGCCTCACTCTGAAATTC 60.424 47.826 0.00 0.00 0.00 2.17
44 45 2.480419 CGAAACGCCTCACTCTGAAATT 59.520 45.455 0.00 0.00 0.00 1.82
45 46 2.069273 CGAAACGCCTCACTCTGAAAT 58.931 47.619 0.00 0.00 0.00 2.17
46 47 1.497991 CGAAACGCCTCACTCTGAAA 58.502 50.000 0.00 0.00 0.00 2.69
47 48 0.319555 CCGAAACGCCTCACTCTGAA 60.320 55.000 0.00 0.00 0.00 3.02
48 49 1.289066 CCGAAACGCCTCACTCTGA 59.711 57.895 0.00 0.00 0.00 3.27
49 50 1.006102 ACCGAAACGCCTCACTCTG 60.006 57.895 0.00 0.00 0.00 3.35
50 51 1.006102 CACCGAAACGCCTCACTCT 60.006 57.895 0.00 0.00 0.00 3.24
51 52 2.668280 GCACCGAAACGCCTCACTC 61.668 63.158 0.00 0.00 0.00 3.51
52 53 2.665185 GCACCGAAACGCCTCACT 60.665 61.111 0.00 0.00 0.00 3.41
53 54 2.665185 AGCACCGAAACGCCTCAC 60.665 61.111 0.00 0.00 0.00 3.51
54 55 2.357034 GAGCACCGAAACGCCTCA 60.357 61.111 0.00 0.00 0.00 3.86
55 56 2.357034 TGAGCACCGAAACGCCTC 60.357 61.111 0.00 0.00 0.00 4.70
56 57 2.357517 CTGAGCACCGAAACGCCT 60.358 61.111 0.00 0.00 0.00 5.52
57 58 3.423154 CCTGAGCACCGAAACGCC 61.423 66.667 0.00 0.00 0.00 5.68
58 59 4.090057 GCCTGAGCACCGAAACGC 62.090 66.667 0.00 0.00 39.53 4.84
59 60 2.357517 AGCCTGAGCACCGAAACG 60.358 61.111 0.00 0.00 43.56 3.60
60 61 0.674895 ATGAGCCTGAGCACCGAAAC 60.675 55.000 0.00 0.00 43.56 2.78
61 62 0.391661 GATGAGCCTGAGCACCGAAA 60.392 55.000 0.00 0.00 43.56 3.46
62 63 1.219124 GATGAGCCTGAGCACCGAA 59.781 57.895 0.00 0.00 43.56 4.30
63 64 1.683707 AGATGAGCCTGAGCACCGA 60.684 57.895 0.00 0.00 43.56 4.69
64 65 1.521010 CAGATGAGCCTGAGCACCG 60.521 63.158 0.00 0.00 43.56 4.94
65 66 1.818785 GCAGATGAGCCTGAGCACC 60.819 63.158 0.00 0.00 43.56 5.01
66 67 1.078637 TGCAGATGAGCCTGAGCAC 60.079 57.895 0.00 0.00 43.56 4.40
67 68 1.078637 GTGCAGATGAGCCTGAGCA 60.079 57.895 0.00 0.00 43.56 4.26
68 69 1.818785 GGTGCAGATGAGCCTGAGC 60.819 63.158 0.00 0.00 36.29 4.26
69 70 1.153208 GGGTGCAGATGAGCCTGAG 60.153 63.158 0.00 0.00 36.29 3.35
70 71 2.993008 GGGTGCAGATGAGCCTGA 59.007 61.111 0.00 0.00 36.29 3.86
71 72 2.513204 CGGGTGCAGATGAGCCTG 60.513 66.667 0.00 0.00 37.23 4.85
72 73 3.790437 CCGGGTGCAGATGAGCCT 61.790 66.667 0.00 0.00 0.00 4.58
73 74 4.101448 ACCGGGTGCAGATGAGCC 62.101 66.667 6.32 0.00 0.00 4.70
74 75 2.512515 GACCGGGTGCAGATGAGC 60.513 66.667 3.30 0.00 0.00 4.26
75 76 1.153489 CTGACCGGGTGCAGATGAG 60.153 63.158 3.30 0.00 34.06 2.90
76 77 2.659063 CCTGACCGGGTGCAGATGA 61.659 63.158 20.96 0.00 34.06 2.92
77 78 2.124983 CCTGACCGGGTGCAGATG 60.125 66.667 20.96 7.78 34.06 2.90
78 79 1.918293 TTCCTGACCGGGTGCAGAT 60.918 57.895 20.96 0.00 34.06 2.90
79 80 2.525629 TTCCTGACCGGGTGCAGA 60.526 61.111 20.96 6.81 34.06 4.26
80 81 2.358737 GTTCCTGACCGGGTGCAG 60.359 66.667 3.30 11.68 0.00 4.41
81 82 2.272230 TTTGTTCCTGACCGGGTGCA 62.272 55.000 3.30 1.51 0.00 4.57
82 83 1.104577 TTTTGTTCCTGACCGGGTGC 61.105 55.000 3.30 0.00 0.00 5.01
83 84 1.539827 GATTTTGTTCCTGACCGGGTG 59.460 52.381 3.30 0.00 0.00 4.61
84 85 1.144093 TGATTTTGTTCCTGACCGGGT 59.856 47.619 6.32 0.00 0.00 5.28
85 86 1.812571 CTGATTTTGTTCCTGACCGGG 59.187 52.381 6.32 0.00 0.00 5.73
86 87 2.778299 TCTGATTTTGTTCCTGACCGG 58.222 47.619 0.00 0.00 0.00 5.28
87 88 3.563808 TGTTCTGATTTTGTTCCTGACCG 59.436 43.478 0.00 0.00 0.00 4.79
88 89 5.067805 ACTTGTTCTGATTTTGTTCCTGACC 59.932 40.000 0.00 0.00 0.00 4.02
89 90 6.136541 ACTTGTTCTGATTTTGTTCCTGAC 57.863 37.500 0.00 0.00 0.00 3.51
90 91 7.054124 AGTACTTGTTCTGATTTTGTTCCTGA 58.946 34.615 0.00 0.00 0.00 3.86
91 92 7.264373 AGTACTTGTTCTGATTTTGTTCCTG 57.736 36.000 0.00 0.00 0.00 3.86
92 93 8.429641 TCTAGTACTTGTTCTGATTTTGTTCCT 58.570 33.333 0.00 0.00 0.00 3.36
93 94 8.603242 TCTAGTACTTGTTCTGATTTTGTTCC 57.397 34.615 0.00 0.00 0.00 3.62
149 150 8.857694 AAAGACAAATCCGAGGTCTATAAAAA 57.142 30.769 0.00 0.00 40.80 1.94
150 151 8.857694 AAAAGACAAATCCGAGGTCTATAAAA 57.142 30.769 0.00 0.00 40.80 1.52
151 152 8.857694 AAAAAGACAAATCCGAGGTCTATAAA 57.142 30.769 0.00 0.00 40.80 1.40
179 180 4.866508 TGGACATCTAAACAACTCTCGT 57.133 40.909 0.00 0.00 0.00 4.18
191 192 9.656040 CCAATTTTCAAATCATTTGGACATCTA 57.344 29.630 10.30 0.00 40.98 1.98
210 211 3.826157 TGCTTGAGGTTCGATCCAATTTT 59.174 39.130 14.83 0.00 0.00 1.82
217 218 5.164954 GGTAGATATGCTTGAGGTTCGATC 58.835 45.833 0.00 0.00 0.00 3.69
219 220 3.958147 TGGTAGATATGCTTGAGGTTCGA 59.042 43.478 0.00 0.00 0.00 3.71
220 221 4.051922 GTGGTAGATATGCTTGAGGTTCG 58.948 47.826 0.00 0.00 0.00 3.95
230 231 5.621197 TTTTGTGTGTGTGGTAGATATGC 57.379 39.130 0.00 0.00 0.00 3.14
324 331 2.427453 TCTCGGTAATCCACTTCTGAGC 59.573 50.000 0.00 0.00 34.47 4.26
325 332 4.720649 TTCTCGGTAATCCACTTCTGAG 57.279 45.455 0.00 0.00 35.41 3.35
326 333 5.395324 GGAATTCTCGGTAATCCACTTCTGA 60.395 44.000 5.23 0.00 0.00 3.27
327 334 4.811557 GGAATTCTCGGTAATCCACTTCTG 59.188 45.833 5.23 0.00 0.00 3.02
328 335 4.469945 TGGAATTCTCGGTAATCCACTTCT 59.530 41.667 5.23 0.00 0.00 2.85
329 336 4.766375 TGGAATTCTCGGTAATCCACTTC 58.234 43.478 5.23 0.00 0.00 3.01
330 337 4.225267 ACTGGAATTCTCGGTAATCCACTT 59.775 41.667 5.23 0.00 0.00 3.16
331 338 3.775316 ACTGGAATTCTCGGTAATCCACT 59.225 43.478 5.23 0.00 0.00 4.00
349 356 5.829924 ACATTTCCCTTCAATATAGCACTGG 59.170 40.000 0.00 0.00 0.00 4.00
362 369 5.006386 AGATGTCACTCAACATTTCCCTTC 58.994 41.667 0.00 0.00 39.93 3.46
363 370 4.763793 CAGATGTCACTCAACATTTCCCTT 59.236 41.667 0.00 0.00 39.93 3.95
400 407 7.204604 TCGTGTCATAACTGTGAGACTAAAAA 58.795 34.615 2.99 0.00 39.49 1.94
446 453 5.683681 ACAACTGTGATGGACATATGCATA 58.316 37.500 9.27 9.27 36.94 3.14
478 486 3.965539 GAGCACCTGCAGATGCGGT 62.966 63.158 27.21 11.37 46.74 5.68
481 489 1.367599 GACTGAGCACCTGCAGATGC 61.368 60.000 26.50 26.50 45.16 3.91
483 491 0.536260 GAGACTGAGCACCTGCAGAT 59.464 55.000 17.39 0.00 45.16 2.90
484 492 1.539560 GGAGACTGAGCACCTGCAGA 61.540 60.000 17.39 0.00 45.16 4.26
491 499 1.437625 GAAGCAAGGAGACTGAGCAC 58.562 55.000 0.00 0.00 42.68 4.40
538 546 2.292292 GGTTATTGTGGACAAGTGCGTT 59.708 45.455 0.00 0.00 39.47 4.84
541 549 2.884639 ACAGGTTATTGTGGACAAGTGC 59.115 45.455 0.00 0.00 39.47 4.40
545 554 4.171878 TCCAACAGGTTATTGTGGACAA 57.828 40.909 0.00 0.00 40.51 3.18
552 561 8.043710 ACTCTAGAGATTTCCAACAGGTTATTG 58.956 37.037 26.57 0.00 0.00 1.90
774 793 1.591703 GCTTGGGTTTAAGGCTGGC 59.408 57.895 0.00 0.00 0.00 4.85
775 794 0.893727 ACGCTTGGGTTTAAGGCTGG 60.894 55.000 0.00 0.00 0.00 4.85
916 936 2.070783 GGTCTTAACCGTGATTTCGCA 58.929 47.619 0.00 0.00 35.36 5.10
927 947 5.417580 TGTGATTTTGCCTATGGTCTTAACC 59.582 40.000 0.00 0.00 46.66 2.85
952 973 2.487428 CCTCTGGTCGCACTCTCG 59.513 66.667 0.00 0.00 0.00 4.04
978 1001 5.275067 TGGATTTCACCTTTGGTTTCTTG 57.725 39.130 0.00 0.00 31.02 3.02
987 1010 2.460669 GCCTCCATGGATTTCACCTTT 58.539 47.619 16.63 0.00 38.35 3.11
992 1015 0.033208 GGTGGCCTCCATGGATTTCA 60.033 55.000 16.63 10.69 35.28 2.69
1176 1199 4.161295 CTCTGCATCGCCGGGGAA 62.161 66.667 26.33 8.34 0.00 3.97
1200 1223 3.321497 CCGCCTATCTTTATCTGTGAGC 58.679 50.000 0.00 0.00 0.00 4.26
1206 1229 0.037232 GCCGCCGCCTATCTTTATCT 60.037 55.000 0.00 0.00 0.00 1.98
1224 1250 2.440569 GCGCTTGAGACTCTGTCGC 61.441 63.158 15.73 15.73 37.67 5.19
1229 1255 3.764466 CCCGGCGCTTGAGACTCT 61.764 66.667 7.64 0.00 0.00 3.24
1260 1289 2.629656 CGGCAGGCACCCTTCAAAG 61.630 63.158 0.00 0.00 0.00 2.77
1278 1307 1.303643 CCCCAGCTGGAACTTCACC 60.304 63.158 34.91 0.00 37.39 4.02
1341 1370 3.499926 GCCCCTGGAGAATCATTCATCAT 60.500 47.826 0.00 0.00 36.25 2.45
1342 1371 2.158564 GCCCCTGGAGAATCATTCATCA 60.159 50.000 0.00 0.00 36.25 3.07
1343 1372 2.158564 TGCCCCTGGAGAATCATTCATC 60.159 50.000 0.00 0.00 36.25 2.92
1344 1373 1.854939 TGCCCCTGGAGAATCATTCAT 59.145 47.619 0.00 0.00 36.25 2.57
1345 1374 1.297968 TGCCCCTGGAGAATCATTCA 58.702 50.000 0.00 0.00 36.25 2.57
1346 1375 2.428530 GTTTGCCCCTGGAGAATCATTC 59.571 50.000 0.00 0.00 36.25 2.67
1347 1376 2.225343 TGTTTGCCCCTGGAGAATCATT 60.225 45.455 0.00 0.00 36.25 2.57
1447 1480 1.000843 TCTATGGCGGTGAATCATCGG 59.999 52.381 18.10 0.29 38.53 4.18
1461 1494 7.013559 TGTGTGCTAAATTGGATTGATCTATGG 59.986 37.037 0.00 0.00 0.00 2.74
1502 1535 3.562141 TGTTTTCATAGGACAACCGTGTG 59.438 43.478 4.14 0.00 38.41 3.82
1528 1561 4.036352 GCTGTTCTACGTATCTGCTGTAC 58.964 47.826 0.00 0.00 0.00 2.90
1532 1565 4.392921 AATGCTGTTCTACGTATCTGCT 57.607 40.909 17.62 7.56 0.00 4.24
1582 1617 3.853831 TGTGATGATGCAAATGTGTCC 57.146 42.857 0.00 0.00 0.00 4.02
1584 1619 4.859304 ACTTGTGATGATGCAAATGTGT 57.141 36.364 0.00 0.00 0.00 3.72
1590 1625 4.082081 GGAATGGAACTTGTGATGATGCAA 60.082 41.667 0.00 0.00 0.00 4.08
1650 1689 1.072666 GCCTGCGCTTACATTTGTGC 61.073 55.000 9.73 0.00 39.80 4.57
1660 1699 0.179062 CCTCTCTATTGCCTGCGCTT 60.179 55.000 9.73 0.00 35.36 4.68
1662 1701 2.250237 GCCTCTCTATTGCCTGCGC 61.250 63.158 0.00 0.00 0.00 6.09
1663 1702 0.879400 CTGCCTCTCTATTGCCTGCG 60.879 60.000 0.00 0.00 0.00 5.18
1664 1703 0.534652 CCTGCCTCTCTATTGCCTGC 60.535 60.000 0.00 0.00 0.00 4.85
1673 1713 5.957771 TTGTATATTTCACCTGCCTCTCT 57.042 39.130 0.00 0.00 0.00 3.10
1674 1714 5.880332 TGTTTGTATATTTCACCTGCCTCTC 59.120 40.000 0.00 0.00 0.00 3.20
1678 1718 5.519927 GCAATGTTTGTATATTTCACCTGCC 59.480 40.000 0.00 0.00 0.00 4.85
1679 1719 6.332630 AGCAATGTTTGTATATTTCACCTGC 58.667 36.000 0.00 0.00 0.00 4.85
1681 1721 7.944729 AGAGCAATGTTTGTATATTTCACCT 57.055 32.000 0.00 0.00 0.00 4.00
1683 1723 9.065871 GTCAAGAGCAATGTTTGTATATTTCAC 57.934 33.333 0.00 0.00 0.00 3.18
1687 1727 6.094048 AGCGTCAAGAGCAATGTTTGTATATT 59.906 34.615 0.00 0.00 37.01 1.28
1691 1731 3.138304 AGCGTCAAGAGCAATGTTTGTA 58.862 40.909 0.00 0.00 37.01 2.41
1709 1749 2.419673 TCTGCACATAATTTGGTGAGCG 59.580 45.455 11.94 4.34 37.18 5.03
1743 1783 8.722394 GTGTTTTTGGAAATGTGGTTTAGAAAA 58.278 29.630 0.00 0.00 0.00 2.29
1785 1825 0.460987 GCTCTGTCGACATTCCAGGG 60.461 60.000 20.40 8.05 0.00 4.45
1792 1832 3.865446 TCATCATTTGCTCTGTCGACAT 58.135 40.909 20.40 0.00 0.00 3.06
1833 1873 2.582728 TTGCCAAACTTTGCAGACTG 57.417 45.000 0.00 0.00 38.95 3.51
1839 1880 4.444388 GCTAGTTACTTTGCCAAACTTTGC 59.556 41.667 0.00 0.00 35.23 3.68
1917 1958 5.869888 CGGTTGATTACTAGACTTCTTTGCT 59.130 40.000 0.00 0.00 0.00 3.91
1920 1961 5.790593 TGCGGTTGATTACTAGACTTCTTT 58.209 37.500 0.00 0.00 0.00 2.52
1929 1970 4.413495 GCAAACTTGCGGTTGATTACTA 57.587 40.909 0.00 0.00 45.11 1.82
1952 1993 2.418197 GCAGTATACCTCGTTGCTGGAA 60.418 50.000 0.00 0.00 0.00 3.53
1956 1997 1.825474 ACTGCAGTATACCTCGTTGCT 59.175 47.619 20.16 0.00 35.85 3.91
1998 2039 7.573710 TCAGGTTAGCTAATGGAAATGTATGT 58.426 34.615 9.88 0.00 0.00 2.29
2004 2045 8.593945 TCATTTTCAGGTTAGCTAATGGAAAT 57.406 30.769 20.88 18.61 0.00 2.17
2019 2060 7.444183 TGTTAAGGAGTACTGTTCATTTTCAGG 59.556 37.037 0.00 0.00 36.17 3.86
2021 2062 8.740123 TTGTTAAGGAGTACTGTTCATTTTCA 57.260 30.769 0.00 0.00 0.00 2.69
2051 2092 4.306600 TGGATATGTGCTGTAACTATGCG 58.693 43.478 0.00 0.00 0.00 4.73
2054 2095 7.308450 ACTCATGGATATGTGCTGTAACTAT 57.692 36.000 0.00 0.00 35.73 2.12
2055 2096 6.731292 ACTCATGGATATGTGCTGTAACTA 57.269 37.500 0.00 0.00 35.73 2.24
2060 2101 4.637534 GTCAAACTCATGGATATGTGCTGT 59.362 41.667 0.00 0.00 35.73 4.40
2061 2102 4.637091 TGTCAAACTCATGGATATGTGCTG 59.363 41.667 0.00 0.00 35.73 4.41
2062 2103 4.847198 TGTCAAACTCATGGATATGTGCT 58.153 39.130 0.00 0.00 35.73 4.40
2064 2105 8.991243 AAAATTGTCAAACTCATGGATATGTG 57.009 30.769 0.00 0.00 35.73 3.21
2080 2121 7.750229 AATTAGCTCACTCAGAAAATTGTCA 57.250 32.000 0.00 0.00 0.00 3.58
2081 2122 8.078596 ACAAATTAGCTCACTCAGAAAATTGTC 58.921 33.333 0.00 0.00 0.00 3.18
2089 2130 5.717178 ACTCCTACAAATTAGCTCACTCAGA 59.283 40.000 0.00 0.00 0.00 3.27
2141 2184 0.109365 TGTGAATGGATTTTGCGCCG 60.109 50.000 4.18 0.00 0.00 6.46
2142 2185 1.632422 CTGTGAATGGATTTTGCGCC 58.368 50.000 4.18 0.00 0.00 6.53
2143 2186 0.994263 GCTGTGAATGGATTTTGCGC 59.006 50.000 0.00 0.00 0.00 6.09
2144 2187 2.350899 TGCTGTGAATGGATTTTGCG 57.649 45.000 0.00 0.00 0.00 4.85
2145 2188 3.852286 TGATGCTGTGAATGGATTTTGC 58.148 40.909 0.00 0.00 0.00 3.68
2146 2189 6.103330 TGATTGATGCTGTGAATGGATTTTG 58.897 36.000 0.00 0.00 0.00 2.44
2147 2190 6.153851 TCTGATTGATGCTGTGAATGGATTTT 59.846 34.615 0.00 0.00 0.00 1.82
2148 2191 5.655090 TCTGATTGATGCTGTGAATGGATTT 59.345 36.000 0.00 0.00 0.00 2.17
2149 2192 5.198207 TCTGATTGATGCTGTGAATGGATT 58.802 37.500 0.00 0.00 0.00 3.01
2150 2193 4.788679 TCTGATTGATGCTGTGAATGGAT 58.211 39.130 0.00 0.00 0.00 3.41
2151 2194 4.224991 TCTGATTGATGCTGTGAATGGA 57.775 40.909 0.00 0.00 0.00 3.41
2152 2195 4.822350 AGATCTGATTGATGCTGTGAATGG 59.178 41.667 0.00 0.00 35.14 3.16
2153 2196 7.492352 TTAGATCTGATTGATGCTGTGAATG 57.508 36.000 5.18 0.00 35.14 2.67
2154 2197 9.217278 GTATTAGATCTGATTGATGCTGTGAAT 57.783 33.333 5.18 0.00 35.14 2.57
2155 2198 7.658982 GGTATTAGATCTGATTGATGCTGTGAA 59.341 37.037 5.18 0.00 35.14 3.18
2156 2199 7.157347 GGTATTAGATCTGATTGATGCTGTGA 58.843 38.462 5.18 0.00 35.14 3.58
2157 2200 6.932960 TGGTATTAGATCTGATTGATGCTGTG 59.067 38.462 5.18 0.00 35.14 3.66
2158 2201 7.071069 TGGTATTAGATCTGATTGATGCTGT 57.929 36.000 5.18 0.00 35.14 4.40
2159 2202 9.662947 TTATGGTATTAGATCTGATTGATGCTG 57.337 33.333 5.18 0.00 35.14 4.41
2178 2221 9.461312 AGTTGCTTCTGTTGATTATTTATGGTA 57.539 29.630 0.00 0.00 0.00 3.25
2179 2222 8.353423 AGTTGCTTCTGTTGATTATTTATGGT 57.647 30.769 0.00 0.00 0.00 3.55
2180 2223 9.294030 GAAGTTGCTTCTGTTGATTATTTATGG 57.706 33.333 1.98 0.00 37.49 2.74
2181 2224 9.844790 TGAAGTTGCTTCTGTTGATTATTTATG 57.155 29.630 9.82 0.00 40.73 1.90
2184 2227 9.598517 TTTTGAAGTTGCTTCTGTTGATTATTT 57.401 25.926 9.82 0.00 40.73 1.40
2185 2228 9.768662 ATTTTGAAGTTGCTTCTGTTGATTATT 57.231 25.926 9.82 0.00 40.73 1.40
2188 2231 9.598517 TTTATTTTGAAGTTGCTTCTGTTGATT 57.401 25.926 9.82 0.00 40.73 2.57
2189 2232 9.768662 ATTTATTTTGAAGTTGCTTCTGTTGAT 57.231 25.926 9.82 1.71 40.73 2.57
2190 2233 9.598517 AATTTATTTTGAAGTTGCTTCTGTTGA 57.401 25.926 9.82 0.00 40.73 3.18
2211 2254 9.918630 GTAAGTCCACTGTCTGTAAGTAATTTA 57.081 33.333 0.00 0.00 33.76 1.40
2212 2255 8.426489 TGTAAGTCCACTGTCTGTAAGTAATTT 58.574 33.333 0.00 0.00 33.76 1.82
2213 2256 7.959175 TGTAAGTCCACTGTCTGTAAGTAATT 58.041 34.615 0.00 0.00 33.76 1.40
2214 2257 7.534723 TGTAAGTCCACTGTCTGTAAGTAAT 57.465 36.000 0.00 0.00 33.76 1.89
2215 2258 6.964807 TGTAAGTCCACTGTCTGTAAGTAA 57.035 37.500 0.00 0.00 33.76 2.24
2216 2259 8.818622 ATATGTAAGTCCACTGTCTGTAAGTA 57.181 34.615 0.00 0.00 33.76 2.24
2217 2260 7.719871 ATATGTAAGTCCACTGTCTGTAAGT 57.280 36.000 0.00 0.00 33.76 2.24
2220 2263 9.416284 TGAATATATGTAAGTCCACTGTCTGTA 57.584 33.333 0.00 0.00 0.00 2.74
2221 2264 8.306313 TGAATATATGTAAGTCCACTGTCTGT 57.694 34.615 0.00 0.00 0.00 3.41
2222 2265 9.770097 AATGAATATATGTAAGTCCACTGTCTG 57.230 33.333 0.00 0.00 0.00 3.51
2225 2268 9.342308 CCAAATGAATATATGTAAGTCCACTGT 57.658 33.333 0.00 0.00 0.00 3.55
2226 2269 9.559732 TCCAAATGAATATATGTAAGTCCACTG 57.440 33.333 0.00 0.00 0.00 3.66
2227 2270 9.561069 GTCCAAATGAATATATGTAAGTCCACT 57.439 33.333 0.00 0.00 0.00 4.00
2228 2271 9.337396 TGTCCAAATGAATATATGTAAGTCCAC 57.663 33.333 0.00 0.00 0.00 4.02
2229 2272 9.913310 TTGTCCAAATGAATATATGTAAGTCCA 57.087 29.630 0.00 0.00 0.00 4.02
2239 2282 9.825109 TCGTACTGATTTGTCCAAATGAATATA 57.175 29.630 9.84 0.00 40.77 0.86
2240 2283 8.731275 TCGTACTGATTTGTCCAAATGAATAT 57.269 30.769 9.84 0.00 40.77 1.28
2241 2284 8.611757 CATCGTACTGATTTGTCCAAATGAATA 58.388 33.333 9.84 0.00 40.77 1.75
2242 2285 7.336679 TCATCGTACTGATTTGTCCAAATGAAT 59.663 33.333 9.84 0.00 40.77 2.57
2243 2286 6.652900 TCATCGTACTGATTTGTCCAAATGAA 59.347 34.615 9.84 0.00 40.77 2.57
2244 2287 6.169800 TCATCGTACTGATTTGTCCAAATGA 58.830 36.000 9.84 1.13 40.77 2.57
2245 2288 6.421377 TCATCGTACTGATTTGTCCAAATG 57.579 37.500 9.84 0.15 40.77 2.32
2246 2289 6.878923 TCTTCATCGTACTGATTTGTCCAAAT 59.121 34.615 4.98 4.98 43.14 2.32
2247 2290 6.227522 TCTTCATCGTACTGATTTGTCCAAA 58.772 36.000 0.00 0.00 34.13 3.28
2248 2291 5.789521 TCTTCATCGTACTGATTTGTCCAA 58.210 37.500 0.00 0.00 34.13 3.53
2249 2292 5.400066 TCTTCATCGTACTGATTTGTCCA 57.600 39.130 0.00 0.00 34.13 4.02
2250 2293 7.169982 CCTTATCTTCATCGTACTGATTTGTCC 59.830 40.741 0.00 0.00 34.13 4.02
2251 2294 7.921214 TCCTTATCTTCATCGTACTGATTTGTC 59.079 37.037 0.00 0.00 34.13 3.18
2252 2295 7.782049 TCCTTATCTTCATCGTACTGATTTGT 58.218 34.615 0.00 0.00 34.13 2.83
2253 2296 8.706936 CATCCTTATCTTCATCGTACTGATTTG 58.293 37.037 0.00 0.00 34.13 2.32
2254 2297 8.424918 ACATCCTTATCTTCATCGTACTGATTT 58.575 33.333 0.00 0.00 34.13 2.17
2255 2298 7.869937 CACATCCTTATCTTCATCGTACTGATT 59.130 37.037 0.00 0.00 34.13 2.57
2256 2299 7.374272 CACATCCTTATCTTCATCGTACTGAT 58.626 38.462 0.00 0.00 38.01 2.90
2257 2300 6.239036 CCACATCCTTATCTTCATCGTACTGA 60.239 42.308 0.00 0.00 0.00 3.41
2258 2301 5.923114 CCACATCCTTATCTTCATCGTACTG 59.077 44.000 0.00 0.00 0.00 2.74
2259 2302 5.833667 TCCACATCCTTATCTTCATCGTACT 59.166 40.000 0.00 0.00 0.00 2.73
2260 2303 6.085555 TCCACATCCTTATCTTCATCGTAC 57.914 41.667 0.00 0.00 0.00 3.67
2261 2304 6.295292 CCATCCACATCCTTATCTTCATCGTA 60.295 42.308 0.00 0.00 0.00 3.43
2262 2305 5.512060 CCATCCACATCCTTATCTTCATCGT 60.512 44.000 0.00 0.00 0.00 3.73
2263 2306 4.934001 CCATCCACATCCTTATCTTCATCG 59.066 45.833 0.00 0.00 0.00 3.84
2264 2307 5.251764 CCCATCCACATCCTTATCTTCATC 58.748 45.833 0.00 0.00 0.00 2.92
2265 2308 4.043812 CCCCATCCACATCCTTATCTTCAT 59.956 45.833 0.00 0.00 0.00 2.57
2266 2309 3.395607 CCCCATCCACATCCTTATCTTCA 59.604 47.826 0.00 0.00 0.00 3.02
2267 2310 3.652869 TCCCCATCCACATCCTTATCTTC 59.347 47.826 0.00 0.00 0.00 2.87
2268 2311 3.680169 TCCCCATCCACATCCTTATCTT 58.320 45.455 0.00 0.00 0.00 2.40
2269 2312 3.367280 TCCCCATCCACATCCTTATCT 57.633 47.619 0.00 0.00 0.00 1.98
2270 2313 3.395941 ACTTCCCCATCCACATCCTTATC 59.604 47.826 0.00 0.00 0.00 1.75
2271 2314 3.139025 CACTTCCCCATCCACATCCTTAT 59.861 47.826 0.00 0.00 0.00 1.73
2272 2315 2.509548 CACTTCCCCATCCACATCCTTA 59.490 50.000 0.00 0.00 0.00 2.69
2273 2316 1.285962 CACTTCCCCATCCACATCCTT 59.714 52.381 0.00 0.00 0.00 3.36
2274 2317 0.921896 CACTTCCCCATCCACATCCT 59.078 55.000 0.00 0.00 0.00 3.24
2275 2318 0.106519 CCACTTCCCCATCCACATCC 60.107 60.000 0.00 0.00 0.00 3.51
2276 2319 0.753111 GCCACTTCCCCATCCACATC 60.753 60.000 0.00 0.00 0.00 3.06
2277 2320 1.307647 GCCACTTCCCCATCCACAT 59.692 57.895 0.00 0.00 0.00 3.21
2278 2321 2.763215 GCCACTTCCCCATCCACA 59.237 61.111 0.00 0.00 0.00 4.17
2279 2322 2.438434 CGCCACTTCCCCATCCAC 60.438 66.667 0.00 0.00 0.00 4.02
2280 2323 4.424711 GCGCCACTTCCCCATCCA 62.425 66.667 0.00 0.00 0.00 3.41
2282 2325 3.721370 ATGGCGCCACTTCCCCATC 62.721 63.158 35.50 0.00 32.85 3.51
2283 2326 3.743017 ATGGCGCCACTTCCCCAT 61.743 61.111 35.50 10.89 33.39 4.00
2284 2327 4.738998 CATGGCGCCACTTCCCCA 62.739 66.667 35.50 6.20 0.00 4.96
2285 2328 3.936772 TTCATGGCGCCACTTCCCC 62.937 63.158 35.50 0.00 0.00 4.81
2286 2329 2.361104 TTCATGGCGCCACTTCCC 60.361 61.111 35.50 0.00 0.00 3.97
2287 2330 3.056313 GCTTCATGGCGCCACTTCC 62.056 63.158 35.50 15.71 0.00 3.46
2288 2331 0.744414 TAGCTTCATGGCGCCACTTC 60.744 55.000 35.50 18.86 37.29 3.01
2289 2332 0.322456 TTAGCTTCATGGCGCCACTT 60.322 50.000 35.50 15.60 37.29 3.16
2290 2333 0.107017 ATTAGCTTCATGGCGCCACT 60.107 50.000 35.50 25.87 37.29 4.00
2291 2334 0.740737 AATTAGCTTCATGGCGCCAC 59.259 50.000 35.50 19.51 37.29 5.01
2292 2335 0.740149 CAATTAGCTTCATGGCGCCA 59.260 50.000 34.80 34.80 37.29 5.69
2293 2336 0.595825 GCAATTAGCTTCATGGCGCC 60.596 55.000 22.73 22.73 41.15 6.53
2294 2337 2.877396 GCAATTAGCTTCATGGCGC 58.123 52.632 0.00 0.00 41.15 6.53
2304 2347 2.159254 TCGGCAATTCCAAGCAATTAGC 60.159 45.455 0.00 0.00 38.04 3.09
2305 2348 3.489738 CCTCGGCAATTCCAAGCAATTAG 60.490 47.826 0.00 0.00 34.01 1.73
2306 2349 2.426738 CCTCGGCAATTCCAAGCAATTA 59.573 45.455 0.00 0.00 34.01 1.40
2307 2350 1.205417 CCTCGGCAATTCCAAGCAATT 59.795 47.619 0.00 0.00 34.01 2.32
2308 2351 0.819582 CCTCGGCAATTCCAAGCAAT 59.180 50.000 0.00 0.00 34.01 3.56
2309 2352 1.876497 GCCTCGGCAATTCCAAGCAA 61.876 55.000 2.41 0.00 41.49 3.91
2310 2353 2.342650 GCCTCGGCAATTCCAAGCA 61.343 57.895 2.41 0.00 41.49 3.91
2311 2354 2.491621 GCCTCGGCAATTCCAAGC 59.508 61.111 2.41 0.00 41.49 4.01
2321 2364 2.348998 CCCTATCCATGCCTCGGC 59.651 66.667 0.00 0.00 42.35 5.54
2322 2365 1.831652 GACCCCTATCCATGCCTCGG 61.832 65.000 0.00 0.00 0.00 4.63
2323 2366 0.833834 AGACCCCTATCCATGCCTCG 60.834 60.000 0.00 0.00 0.00 4.63
2324 2367 0.980423 GAGACCCCTATCCATGCCTC 59.020 60.000 0.00 0.00 0.00 4.70
2325 2368 0.833834 CGAGACCCCTATCCATGCCT 60.834 60.000 0.00 0.00 0.00 4.75
2326 2369 1.674057 CGAGACCCCTATCCATGCC 59.326 63.158 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.