Multiple sequence alignment - TraesCS6D01G334900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G334900 chr6D 100.000 3332 0 0 1 3332 436717974 436714643 0.000000e+00 6154.0
1 TraesCS6D01G334900 chr6D 84.962 133 18 2 1340 1471 354369541 354369672 2.090000e-27 134.0
2 TraesCS6D01G334900 chr6A 89.271 2703 160 61 691 3332 584912437 584909804 0.000000e+00 3265.0
3 TraesCS6D01G334900 chr6A 79.396 364 21 29 174 513 584912810 584912477 1.210000e-49 207.0
4 TraesCS6D01G334900 chr6A 81.988 161 21 6 1339 1492 487770857 487770698 2.700000e-26 130.0
5 TraesCS6D01G334900 chr6B 90.713 2132 109 44 434 2512 659937213 659935118 0.000000e+00 2758.0
6 TraesCS6D01G334900 chr6B 88.316 582 32 12 2586 3167 659935016 659934471 0.000000e+00 665.0
7 TraesCS6D01G334900 chr6B 87.918 389 23 14 6 382 660050155 660049779 1.420000e-118 436.0
8 TraesCS6D01G334900 chr6B 82.065 368 22 16 433 788 659955640 659955305 1.180000e-69 274.0
9 TraesCS6D01G334900 chr6B 88.000 150 3 3 3183 3332 659934147 659934013 2.660000e-36 163.0
10 TraesCS6D01G334900 chr6B 83.704 135 18 4 1339 1471 523881029 523880897 1.260000e-24 124.0
11 TraesCS6D01G334900 chr6B 94.118 51 3 0 378 428 659955714 659955664 9.910000e-11 78.7
12 TraesCS6D01G334900 chr2B 92.012 338 19 4 1011 1341 571768278 571767942 5.030000e-128 468.0
13 TraesCS6D01G334900 chr7A 91.150 339 21 5 1011 1341 237507689 237508026 5.070000e-123 451.0
14 TraesCS6D01G334900 chr7A 80.240 501 78 13 1053 1538 105863308 105863802 1.140000e-94 357.0
15 TraesCS6D01G334900 chr7D 80.279 502 76 14 1053 1538 101806711 101807205 1.140000e-94 357.0
16 TraesCS6D01G334900 chr7B 78.865 511 79 18 1053 1538 59311518 59312024 5.360000e-83 318.0
17 TraesCS6D01G334900 chr4A 90.833 120 6 3 1226 1341 737844333 737844451 4.450000e-34 156.0
18 TraesCS6D01G334900 chr2A 87.356 87 7 4 1258 1341 419652795 419652880 2.740000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G334900 chr6D 436714643 436717974 3331 True 6154.000000 6154 100.000000 1 3332 1 chr6D.!!$R1 3331
1 TraesCS6D01G334900 chr6A 584909804 584912810 3006 True 1736.000000 3265 84.333500 174 3332 2 chr6A.!!$R2 3158
2 TraesCS6D01G334900 chr6B 659934013 659937213 3200 True 1195.333333 2758 89.009667 434 3332 3 chr6B.!!$R3 2898
3 TraesCS6D01G334900 chr7B 59311518 59312024 506 False 318.000000 318 78.865000 1053 1538 1 chr7B.!!$F1 485

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
349 351 0.097674 CCAGTACGTTACTCGGTCGG 59.902 60.0 0.0 0.0 44.69 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2336 2461 0.177836 TCGACAATGGCGATGATGGT 59.822 50.0 7.28 0.0 32.09 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.518998 CTCGCTCGGTCGACCCAT 61.519 66.667 28.52 0.00 34.46 4.00
19 20 3.064987 CTCGCTCGGTCGACCCATT 62.065 63.158 28.52 0.00 34.46 3.16
20 21 2.125673 CGCTCGGTCGACCCATTT 60.126 61.111 28.52 0.00 0.00 2.32
21 22 1.740296 CGCTCGGTCGACCCATTTT 60.740 57.895 28.52 0.00 0.00 1.82
22 23 1.693083 CGCTCGGTCGACCCATTTTC 61.693 60.000 28.52 10.80 0.00 2.29
23 24 0.672401 GCTCGGTCGACCCATTTTCA 60.672 55.000 28.52 3.31 0.00 2.69
24 25 2.012051 GCTCGGTCGACCCATTTTCAT 61.012 52.381 28.52 0.00 0.00 2.57
25 26 2.356135 CTCGGTCGACCCATTTTCATT 58.644 47.619 28.52 0.00 0.00 2.57
26 27 2.747446 CTCGGTCGACCCATTTTCATTT 59.253 45.455 28.52 0.00 0.00 2.32
27 28 2.745281 TCGGTCGACCCATTTTCATTTC 59.255 45.455 28.52 0.00 0.00 2.17
28 29 2.159435 CGGTCGACCCATTTTCATTTCC 60.159 50.000 28.52 0.00 0.00 3.13
29 30 2.159435 GGTCGACCCATTTTCATTTCCG 60.159 50.000 24.75 0.00 0.00 4.30
30 31 2.088423 TCGACCCATTTTCATTTCCGG 58.912 47.619 0.00 0.00 0.00 5.14
31 32 1.469079 CGACCCATTTTCATTTCCGGC 60.469 52.381 0.00 0.00 0.00 6.13
32 33 1.548269 GACCCATTTTCATTTCCGGCA 59.452 47.619 0.00 0.00 0.00 5.69
33 34 2.168313 GACCCATTTTCATTTCCGGCAT 59.832 45.455 0.00 0.00 0.00 4.40
34 35 2.093553 ACCCATTTTCATTTCCGGCATG 60.094 45.455 0.00 1.16 0.00 4.06
35 36 2.553086 CCATTTTCATTTCCGGCATGG 58.447 47.619 12.17 3.44 40.09 3.66
36 37 1.935199 CATTTTCATTTCCGGCATGGC 59.065 47.619 9.69 9.69 37.80 4.40
37 38 0.248843 TTTTCATTTCCGGCATGGCC 59.751 50.000 14.46 0.00 46.75 5.36
48 49 4.181010 CATGGCCGGGGAGTGGAG 62.181 72.222 2.18 0.00 0.00 3.86
49 50 4.414956 ATGGCCGGGGAGTGGAGA 62.415 66.667 2.18 0.00 0.00 3.71
55 56 3.775654 GGGGAGTGGAGACGGCAG 61.776 72.222 0.00 0.00 0.00 4.85
56 57 4.459089 GGGAGTGGAGACGGCAGC 62.459 72.222 0.00 0.00 0.00 5.25
57 58 3.695606 GGAGTGGAGACGGCAGCA 61.696 66.667 0.00 0.00 0.00 4.41
58 59 2.125753 GAGTGGAGACGGCAGCAG 60.126 66.667 0.00 0.00 0.00 4.24
59 60 4.385405 AGTGGAGACGGCAGCAGC 62.385 66.667 0.00 0.00 41.10 5.25
60 61 4.687215 GTGGAGACGGCAGCAGCA 62.687 66.667 2.65 0.00 44.61 4.41
61 62 3.709633 TGGAGACGGCAGCAGCAT 61.710 61.111 2.65 0.00 44.61 3.79
62 63 2.358372 TGGAGACGGCAGCAGCATA 61.358 57.895 2.65 0.00 44.61 3.14
63 64 1.884926 GGAGACGGCAGCAGCATAC 60.885 63.158 2.65 0.00 44.61 2.39
64 65 2.202797 AGACGGCAGCAGCATACG 60.203 61.111 2.65 0.00 44.61 3.06
65 66 3.929948 GACGGCAGCAGCATACGC 61.930 66.667 2.65 0.00 44.61 4.42
66 67 4.758251 ACGGCAGCAGCATACGCA 62.758 61.111 2.65 0.00 44.61 5.24
67 68 3.274586 CGGCAGCAGCATACGCAT 61.275 61.111 2.65 0.00 44.61 4.73
68 69 2.635899 GGCAGCAGCATACGCATC 59.364 61.111 2.65 0.00 44.61 3.91
69 70 2.182181 GGCAGCAGCATACGCATCA 61.182 57.895 2.65 0.00 44.61 3.07
70 71 1.512996 GGCAGCAGCATACGCATCAT 61.513 55.000 2.65 0.00 44.61 2.45
71 72 0.110328 GCAGCAGCATACGCATCATC 60.110 55.000 0.00 0.00 42.27 2.92
72 73 1.223187 CAGCAGCATACGCATCATCA 58.777 50.000 0.00 0.00 42.27 3.07
73 74 1.804748 CAGCAGCATACGCATCATCAT 59.195 47.619 0.00 0.00 42.27 2.45
74 75 2.074576 AGCAGCATACGCATCATCATC 58.925 47.619 0.00 0.00 42.27 2.92
75 76 2.074576 GCAGCATACGCATCATCATCT 58.925 47.619 0.00 0.00 42.27 2.90
76 77 2.093941 GCAGCATACGCATCATCATCTC 59.906 50.000 0.00 0.00 42.27 2.75
77 78 3.323243 CAGCATACGCATCATCATCTCA 58.677 45.455 0.00 0.00 42.27 3.27
78 79 3.933332 CAGCATACGCATCATCATCTCAT 59.067 43.478 0.00 0.00 42.27 2.90
79 80 4.033014 CAGCATACGCATCATCATCTCATC 59.967 45.833 0.00 0.00 42.27 2.92
80 81 3.930848 GCATACGCATCATCATCTCATCA 59.069 43.478 0.00 0.00 38.36 3.07
81 82 4.390909 GCATACGCATCATCATCTCATCAA 59.609 41.667 0.00 0.00 38.36 2.57
82 83 5.106830 GCATACGCATCATCATCTCATCAAA 60.107 40.000 0.00 0.00 38.36 2.69
83 84 4.808077 ACGCATCATCATCTCATCAAAC 57.192 40.909 0.00 0.00 0.00 2.93
84 85 4.193865 ACGCATCATCATCTCATCAAACA 58.806 39.130 0.00 0.00 0.00 2.83
85 86 4.820173 ACGCATCATCATCTCATCAAACAT 59.180 37.500 0.00 0.00 0.00 2.71
86 87 5.049612 ACGCATCATCATCTCATCAAACATC 60.050 40.000 0.00 0.00 0.00 3.06
87 88 5.049680 CGCATCATCATCTCATCAAACATCA 60.050 40.000 0.00 0.00 0.00 3.07
88 89 6.512741 CGCATCATCATCTCATCAAACATCAA 60.513 38.462 0.00 0.00 0.00 2.57
89 90 7.371159 GCATCATCATCTCATCAAACATCAAT 58.629 34.615 0.00 0.00 0.00 2.57
90 91 8.512138 GCATCATCATCTCATCAAACATCAATA 58.488 33.333 0.00 0.00 0.00 1.90
115 116 4.481195 GTGCAACTTGGCTCCTGA 57.519 55.556 0.00 0.00 34.04 3.86
116 117 1.952263 GTGCAACTTGGCTCCTGAC 59.048 57.895 0.00 0.00 34.04 3.51
117 118 0.536006 GTGCAACTTGGCTCCTGACT 60.536 55.000 0.00 0.00 34.04 3.41
118 119 0.250467 TGCAACTTGGCTCCTGACTC 60.250 55.000 0.00 0.00 34.04 3.36
119 120 0.957888 GCAACTTGGCTCCTGACTCC 60.958 60.000 0.00 0.00 0.00 3.85
120 121 0.322008 CAACTTGGCTCCTGACTCCC 60.322 60.000 0.00 0.00 0.00 4.30
121 122 0.768221 AACTTGGCTCCTGACTCCCA 60.768 55.000 0.00 0.00 0.00 4.37
122 123 0.548682 ACTTGGCTCCTGACTCCCAT 60.549 55.000 0.00 0.00 0.00 4.00
123 124 0.179936 CTTGGCTCCTGACTCCCATC 59.820 60.000 0.00 0.00 0.00 3.51
124 125 0.547471 TTGGCTCCTGACTCCCATCA 60.547 55.000 0.00 0.00 0.00 3.07
125 126 0.326904 TGGCTCCTGACTCCCATCAT 60.327 55.000 0.00 0.00 0.00 2.45
126 127 0.842635 GGCTCCTGACTCCCATCATT 59.157 55.000 0.00 0.00 0.00 2.57
127 128 1.213926 GGCTCCTGACTCCCATCATTT 59.786 52.381 0.00 0.00 0.00 2.32
128 129 2.570135 GCTCCTGACTCCCATCATTTC 58.430 52.381 0.00 0.00 0.00 2.17
129 130 2.092753 GCTCCTGACTCCCATCATTTCA 60.093 50.000 0.00 0.00 0.00 2.69
130 131 3.434739 GCTCCTGACTCCCATCATTTCAT 60.435 47.826 0.00 0.00 0.00 2.57
131 132 4.789807 CTCCTGACTCCCATCATTTCATT 58.210 43.478 0.00 0.00 0.00 2.57
132 133 5.197224 TCCTGACTCCCATCATTTCATTT 57.803 39.130 0.00 0.00 0.00 2.32
133 134 5.195940 TCCTGACTCCCATCATTTCATTTC 58.804 41.667 0.00 0.00 0.00 2.17
134 135 4.951715 CCTGACTCCCATCATTTCATTTCA 59.048 41.667 0.00 0.00 0.00 2.69
135 136 5.597182 CCTGACTCCCATCATTTCATTTCAT 59.403 40.000 0.00 0.00 0.00 2.57
136 137 6.097839 CCTGACTCCCATCATTTCATTTCATT 59.902 38.462 0.00 0.00 0.00 2.57
137 138 7.364408 CCTGACTCCCATCATTTCATTTCATTT 60.364 37.037 0.00 0.00 0.00 2.32
138 139 7.549839 TGACTCCCATCATTTCATTTCATTTC 58.450 34.615 0.00 0.00 0.00 2.17
139 140 7.178805 TGACTCCCATCATTTCATTTCATTTCA 59.821 33.333 0.00 0.00 0.00 2.69
140 141 8.086143 ACTCCCATCATTTCATTTCATTTCAT 57.914 30.769 0.00 0.00 0.00 2.57
141 142 8.545472 ACTCCCATCATTTCATTTCATTTCATT 58.455 29.630 0.00 0.00 0.00 2.57
148 149 9.722184 TCATTTCATTTCATTTCATTAAAGCCA 57.278 25.926 0.00 0.00 0.00 4.75
152 153 9.775854 TTCATTTCATTTCATTAAAGCCAAAGA 57.224 25.926 0.00 0.00 0.00 2.52
153 154 9.775854 TCATTTCATTTCATTAAAGCCAAAGAA 57.224 25.926 0.00 0.00 0.00 2.52
163 164 8.505625 TCATTAAAGCCAAAGAAATGAAATTGC 58.494 29.630 0.00 0.00 36.10 3.56
164 165 7.798596 TTAAAGCCAAAGAAATGAAATTGCA 57.201 28.000 0.00 0.00 36.10 4.08
165 166 5.678132 AAGCCAAAGAAATGAAATTGCAC 57.322 34.783 0.00 0.00 36.10 4.57
166 167 4.964593 AGCCAAAGAAATGAAATTGCACT 58.035 34.783 0.00 0.00 36.10 4.40
167 168 6.100404 AGCCAAAGAAATGAAATTGCACTA 57.900 33.333 0.00 0.00 36.10 2.74
168 169 6.704310 AGCCAAAGAAATGAAATTGCACTAT 58.296 32.000 0.00 0.00 36.10 2.12
169 170 6.592607 AGCCAAAGAAATGAAATTGCACTATG 59.407 34.615 0.00 0.00 36.10 2.23
170 171 6.369615 GCCAAAGAAATGAAATTGCACTATGT 59.630 34.615 0.00 0.00 36.10 2.29
171 172 7.095102 GCCAAAGAAATGAAATTGCACTATGTT 60.095 33.333 0.00 0.00 36.10 2.71
172 173 8.437742 CCAAAGAAATGAAATTGCACTATGTTC 58.562 33.333 0.00 0.00 36.10 3.18
211 213 4.005650 GAGATTCAGAATGCAGGTCAACA 58.994 43.478 0.00 0.00 34.76 3.33
212 214 3.755378 AGATTCAGAATGCAGGTCAACAC 59.245 43.478 0.00 0.00 34.76 3.32
215 217 2.104622 TCAGAATGCAGGTCAACACAGA 59.895 45.455 0.00 0.00 34.76 3.41
216 218 2.483106 CAGAATGCAGGTCAACACAGAG 59.517 50.000 0.00 0.00 0.00 3.35
217 219 1.198637 GAATGCAGGTCAACACAGAGC 59.801 52.381 0.00 0.00 36.31 4.09
218 220 0.607489 ATGCAGGTCAACACAGAGCC 60.607 55.000 0.00 0.00 36.71 4.70
219 221 1.072159 GCAGGTCAACACAGAGCCT 59.928 57.895 0.00 0.00 36.71 4.58
235 237 1.228429 CCTCTCCTCTCCGCCTAGG 60.228 68.421 3.67 3.67 42.97 3.02
236 238 1.901464 CTCTCCTCTCCGCCTAGGC 60.901 68.421 24.75 24.75 40.77 3.93
266 268 3.910170 CGGACACCGTATATCGTACAATG 59.090 47.826 1.80 0.00 42.73 2.82
269 271 4.046462 ACACCGTATATCGTACAATGCAC 58.954 43.478 0.00 0.00 37.94 4.57
270 272 3.118972 CACCGTATATCGTACAATGCACG 59.881 47.826 0.00 0.00 40.72 5.34
278 280 3.640592 TCGTACAATGCACGAAACTACA 58.359 40.909 6.20 0.00 44.79 2.74
279 281 4.049869 TCGTACAATGCACGAAACTACAA 58.950 39.130 6.20 0.00 44.79 2.41
280 282 4.084952 TCGTACAATGCACGAAACTACAAC 60.085 41.667 6.20 0.00 44.79 3.32
281 283 3.247563 ACAATGCACGAAACTACAACG 57.752 42.857 0.00 0.00 0.00 4.10
282 284 2.867368 ACAATGCACGAAACTACAACGA 59.133 40.909 0.00 0.00 0.00 3.85
283 285 3.310227 ACAATGCACGAAACTACAACGAA 59.690 39.130 0.00 0.00 0.00 3.85
284 286 3.788434 ATGCACGAAACTACAACGAAG 57.212 42.857 0.00 0.00 0.00 3.79
286 288 3.704512 TGCACGAAACTACAACGAAGTA 58.295 40.909 0.00 0.00 45.00 2.24
287 289 4.111198 TGCACGAAACTACAACGAAGTAA 58.889 39.130 0.00 0.00 45.00 2.24
288 290 4.207635 TGCACGAAACTACAACGAAGTAAG 59.792 41.667 0.00 0.00 45.00 2.34
289 291 4.442073 GCACGAAACTACAACGAAGTAAGA 59.558 41.667 0.00 0.00 45.00 2.10
290 292 5.387137 GCACGAAACTACAACGAAGTAAGAG 60.387 44.000 0.00 0.00 45.00 2.85
318 320 7.439655 ACAGTACTCTGCTTTTGTTTAAGAGAG 59.560 37.037 5.07 0.00 44.77 3.20
319 321 7.653713 CAGTACTCTGCTTTTGTTTAAGAGAGA 59.346 37.037 0.00 0.00 38.19 3.10
321 323 7.865706 ACTCTGCTTTTGTTTAAGAGAGAAA 57.134 32.000 0.00 0.00 38.19 2.52
323 325 8.184848 ACTCTGCTTTTGTTTAAGAGAGAAAAC 58.815 33.333 0.00 0.00 38.19 2.43
324 326 8.050778 TCTGCTTTTGTTTAAGAGAGAAAACA 57.949 30.769 0.00 0.00 42.27 2.83
325 327 8.184192 TCTGCTTTTGTTTAAGAGAGAAAACAG 58.816 33.333 0.00 0.00 44.05 3.16
326 328 8.050778 TGCTTTTGTTTAAGAGAGAAAACAGA 57.949 30.769 0.00 0.00 44.05 3.41
327 329 8.184192 TGCTTTTGTTTAAGAGAGAAAACAGAG 58.816 33.333 0.00 0.00 44.05 3.35
328 330 8.184848 GCTTTTGTTTAAGAGAGAAAACAGAGT 58.815 33.333 0.00 0.00 44.05 3.24
329 331 9.495754 CTTTTGTTTAAGAGAGAAAACAGAGTG 57.504 33.333 0.00 0.00 44.05 3.51
330 332 6.604735 TGTTTAAGAGAGAAAACAGAGTGC 57.395 37.500 0.00 0.00 39.88 4.40
331 333 5.527582 TGTTTAAGAGAGAAAACAGAGTGCC 59.472 40.000 0.00 0.00 39.88 5.01
343 345 2.228343 ACAGAGTGCCAGTACGTTACTC 59.772 50.000 0.00 11.93 36.76 2.59
346 348 0.242017 GTGCCAGTACGTTACTCGGT 59.758 55.000 0.00 0.00 44.69 4.69
347 349 0.523072 TGCCAGTACGTTACTCGGTC 59.477 55.000 0.00 0.00 44.69 4.79
348 350 0.522076 GCCAGTACGTTACTCGGTCG 60.522 60.000 0.00 0.00 44.69 4.79
349 351 0.097674 CCAGTACGTTACTCGGTCGG 59.902 60.000 0.00 0.00 44.69 4.79
350 352 0.798776 CAGTACGTTACTCGGTCGGT 59.201 55.000 0.00 0.00 44.69 4.69
385 387 4.751172 CATCGCACACGTCATTAACTATG 58.249 43.478 0.00 0.00 41.18 2.23
387 389 2.285602 CGCACACGTCATTAACTATGCC 60.286 50.000 0.00 0.00 34.06 4.40
395 399 6.312918 CACGTCATTAACTATGCCAAACTAGT 59.687 38.462 0.00 0.00 34.06 2.57
424 428 7.039853 TGCAAAAGTCAATACTCAATTCCATGA 60.040 33.333 0.00 0.00 33.75 3.07
428 432 6.484288 AGTCAATACTCAATTCCATGACCAA 58.516 36.000 0.00 0.00 37.10 3.67
429 433 6.947733 AGTCAATACTCAATTCCATGACCAAA 59.052 34.615 0.00 0.00 37.10 3.28
446 471 0.179001 AAACTAAGCACGGCCCAAGT 60.179 50.000 0.00 0.00 0.00 3.16
513 538 1.281656 CCGACGGAACCAGCAAAAC 59.718 57.895 8.64 0.00 0.00 2.43
517 542 1.281656 CGGAACCAGCAAAACCGAC 59.718 57.895 0.00 0.00 45.31 4.79
518 543 1.658114 GGAACCAGCAAAACCGACC 59.342 57.895 0.00 0.00 0.00 4.79
521 547 1.388837 AACCAGCAAAACCGACCCAC 61.389 55.000 0.00 0.00 0.00 4.61
523 549 1.388065 CCAGCAAAACCGACCCACAA 61.388 55.000 0.00 0.00 0.00 3.33
526 552 1.737201 CAAAACCGACCCACAACCC 59.263 57.895 0.00 0.00 0.00 4.11
547 573 1.145156 CACAACCCACAGTCGGTCA 59.855 57.895 0.00 0.00 31.48 4.02
573 599 1.732259 GATCGATCGCACACACCTTTT 59.268 47.619 11.09 0.00 0.00 2.27
577 603 1.106351 ATCGCACACACCTTTTGGCA 61.106 50.000 0.00 0.00 45.59 4.92
578 604 1.299316 CGCACACACCTTTTGGCAG 60.299 57.895 0.00 0.00 45.59 4.85
618 644 1.454847 CCCCCTCTCTCTCTCCACG 60.455 68.421 0.00 0.00 0.00 4.94
634 660 1.734477 ACGCAGCGATGTCTGTCAC 60.734 57.895 24.65 0.00 36.49 3.67
635 661 2.447887 CGCAGCGATGTCTGTCACC 61.448 63.158 9.98 0.00 36.49 4.02
636 662 1.374631 GCAGCGATGTCTGTCACCA 60.375 57.895 1.22 0.00 36.49 4.17
637 663 1.630244 GCAGCGATGTCTGTCACCAC 61.630 60.000 1.22 0.00 36.49 4.16
638 664 1.016130 CAGCGATGTCTGTCACCACC 61.016 60.000 0.00 0.00 0.00 4.61
641 667 0.891373 CGATGTCTGTCACCACCTCT 59.109 55.000 0.00 0.00 0.00 3.69
642 668 1.273606 CGATGTCTGTCACCACCTCTT 59.726 52.381 0.00 0.00 0.00 2.85
643 669 2.289072 CGATGTCTGTCACCACCTCTTT 60.289 50.000 0.00 0.00 0.00 2.52
677 715 5.661312 TCTGCATAATTCTAGTGGTACCAGT 59.339 40.000 25.31 25.31 0.00 4.00
790 830 2.634815 TTTACACCCCACACGCTAAA 57.365 45.000 0.00 0.00 0.00 1.85
791 831 1.881591 TTACACCCCACACGCTAAAC 58.118 50.000 0.00 0.00 0.00 2.01
792 832 0.757512 TACACCCCACACGCTAAACA 59.242 50.000 0.00 0.00 0.00 2.83
793 833 0.107116 ACACCCCACACGCTAAACAA 60.107 50.000 0.00 0.00 0.00 2.83
794 834 1.243902 CACCCCACACGCTAAACAAT 58.756 50.000 0.00 0.00 0.00 2.71
795 835 1.199097 CACCCCACACGCTAAACAATC 59.801 52.381 0.00 0.00 0.00 2.67
796 836 1.073284 ACCCCACACGCTAAACAATCT 59.927 47.619 0.00 0.00 0.00 2.40
797 837 1.737793 CCCCACACGCTAAACAATCTC 59.262 52.381 0.00 0.00 0.00 2.75
798 838 1.393539 CCCACACGCTAAACAATCTCG 59.606 52.381 0.00 0.00 0.00 4.04
799 839 1.201921 CCACACGCTAAACAATCTCGC 60.202 52.381 0.00 0.00 0.00 5.03
800 840 1.076332 ACACGCTAAACAATCTCGCC 58.924 50.000 0.00 0.00 0.00 5.54
801 841 0.373716 CACGCTAAACAATCTCGCCC 59.626 55.000 0.00 0.00 0.00 6.13
802 842 1.082117 ACGCTAAACAATCTCGCCCG 61.082 55.000 0.00 0.00 0.00 6.13
803 843 1.762222 CGCTAAACAATCTCGCCCGG 61.762 60.000 0.00 0.00 0.00 5.73
804 844 0.743345 GCTAAACAATCTCGCCCGGT 60.743 55.000 0.00 0.00 0.00 5.28
808 848 1.258445 AACAATCTCGCCCGGTCTCT 61.258 55.000 0.00 0.00 0.00 3.10
809 849 1.066587 CAATCTCGCCCGGTCTCTC 59.933 63.158 0.00 0.00 0.00 3.20
812 852 1.990160 ATCTCGCCCGGTCTCTCTCT 61.990 60.000 0.00 0.00 0.00 3.10
822 862 1.299541 GTCTCTCTCTCTCTCTGCCG 58.700 60.000 0.00 0.00 0.00 5.69
832 884 3.873361 TCTCTCTCTGCCGCAATTTATTG 59.127 43.478 0.00 0.00 40.66 1.90
866 918 1.073199 ACACAAAGCTTCCCTCCCG 59.927 57.895 0.00 0.00 0.00 5.14
867 919 1.073199 CACAAAGCTTCCCTCCCGT 59.927 57.895 0.00 0.00 0.00 5.28
948 1006 2.415010 CTCGGGCTCTCATCCGTG 59.585 66.667 0.00 0.00 45.79 4.94
968 1026 1.080705 CTGCTTGCTTGCTTGGAGC 60.081 57.895 3.47 0.00 42.82 4.70
970 1028 2.564975 CTTGCTTGCTTGGAGCGG 59.435 61.111 0.00 0.00 46.26 5.52
1089 1151 1.493950 GCATCCTCTTCATCGTGGCG 61.494 60.000 0.00 0.00 0.00 5.69
2151 2276 2.756283 AAGGACGGCGAGGAGGAG 60.756 66.667 16.62 0.00 0.00 3.69
2336 2461 1.244697 GGAGACTGCTCGTGACCAGA 61.245 60.000 0.00 0.00 42.25 3.86
2337 2462 0.109504 GAGACTGCTCGTGACCAGAC 60.110 60.000 0.00 0.00 33.40 3.51
2338 2463 1.080434 GACTGCTCGTGACCAGACC 60.080 63.158 0.00 0.00 33.40 3.85
2339 2464 1.806461 GACTGCTCGTGACCAGACCA 61.806 60.000 0.00 0.00 33.40 4.02
2340 2465 1.188219 ACTGCTCGTGACCAGACCAT 61.188 55.000 0.00 0.00 33.40 3.55
2360 2485 1.933181 TCATCGCCATTGTCGATCAAC 59.067 47.619 0.00 0.00 43.87 3.18
2369 2498 0.601576 TGTCGATCAACACCCCAACG 60.602 55.000 0.00 0.00 0.00 4.10
2370 2499 0.320073 GTCGATCAACACCCCAACGA 60.320 55.000 0.00 0.00 0.00 3.85
2376 2505 1.487142 TCAACACCCCAACGAAAGAGA 59.513 47.619 0.00 0.00 0.00 3.10
2381 2510 3.958147 ACACCCCAACGAAAGAGAAAAAT 59.042 39.130 0.00 0.00 0.00 1.82
2386 2515 5.462068 CCCCAACGAAAGAGAAAAATGAAAC 59.538 40.000 0.00 0.00 0.00 2.78
2443 2572 2.425668 CTCTTCTTCTTCCTCCGTCCTC 59.574 54.545 0.00 0.00 0.00 3.71
2455 2584 1.280142 CGTCCTCGTAGATCGCCAG 59.720 63.158 0.00 0.00 39.67 4.85
2458 2587 1.101635 TCCTCGTAGATCGCCAGTGG 61.102 60.000 4.20 4.20 39.67 4.00
2501 2630 7.267128 CGAGTATATAACCTGTAAAACCCACA 58.733 38.462 0.00 0.00 0.00 4.17
2507 2636 3.763057 ACCTGTAAAACCCACAAGATCC 58.237 45.455 0.00 0.00 0.00 3.36
2511 2659 3.396276 TGTAAAACCCACAAGATCCCTCA 59.604 43.478 0.00 0.00 0.00 3.86
2512 2660 2.887151 AAACCCACAAGATCCCTCAG 57.113 50.000 0.00 0.00 0.00 3.35
2513 2661 0.329596 AACCCACAAGATCCCTCAGC 59.670 55.000 0.00 0.00 0.00 4.26
2514 2662 0.842030 ACCCACAAGATCCCTCAGCA 60.842 55.000 0.00 0.00 0.00 4.41
2515 2663 0.107312 CCCACAAGATCCCTCAGCAG 60.107 60.000 0.00 0.00 0.00 4.24
2516 2664 0.747283 CCACAAGATCCCTCAGCAGC 60.747 60.000 0.00 0.00 0.00 5.25
2517 2665 0.035725 CACAAGATCCCTCAGCAGCA 60.036 55.000 0.00 0.00 0.00 4.41
2518 2666 0.252479 ACAAGATCCCTCAGCAGCAG 59.748 55.000 0.00 0.00 0.00 4.24
2519 2667 0.540454 CAAGATCCCTCAGCAGCAGA 59.460 55.000 0.00 0.00 0.00 4.26
2520 2668 1.141254 CAAGATCCCTCAGCAGCAGAT 59.859 52.381 0.00 0.00 0.00 2.90
2521 2669 1.050204 AGATCCCTCAGCAGCAGATC 58.950 55.000 0.00 0.00 34.79 2.75
2522 2670 0.757512 GATCCCTCAGCAGCAGATCA 59.242 55.000 0.00 0.00 34.73 2.92
2523 2671 1.348366 GATCCCTCAGCAGCAGATCAT 59.652 52.381 0.00 0.00 34.73 2.45
2524 2672 1.210538 TCCCTCAGCAGCAGATCATT 58.789 50.000 0.00 0.00 0.00 2.57
2529 2677 3.532542 CTCAGCAGCAGATCATTTCAGA 58.467 45.455 0.00 0.00 0.00 3.27
2530 2678 4.130857 CTCAGCAGCAGATCATTTCAGAT 58.869 43.478 0.00 0.00 0.00 2.90
2531 2679 4.127907 TCAGCAGCAGATCATTTCAGATC 58.872 43.478 0.00 0.00 43.73 2.75
2532 2680 3.877508 CAGCAGCAGATCATTTCAGATCA 59.122 43.478 6.70 0.00 45.39 2.92
2533 2681 4.335594 CAGCAGCAGATCATTTCAGATCAA 59.664 41.667 6.70 0.00 45.39 2.57
2534 2682 4.335874 AGCAGCAGATCATTTCAGATCAAC 59.664 41.667 6.70 0.00 45.39 3.18
2535 2683 4.335874 GCAGCAGATCATTTCAGATCAACT 59.664 41.667 6.70 1.00 45.39 3.16
2536 2684 5.504337 GCAGCAGATCATTTCAGATCAACTC 60.504 44.000 6.70 0.00 45.39 3.01
2537 2685 5.585047 CAGCAGATCATTTCAGATCAACTCA 59.415 40.000 6.70 0.00 45.39 3.41
2538 2686 5.818336 AGCAGATCATTTCAGATCAACTCAG 59.182 40.000 6.70 0.00 45.39 3.35
2539 2687 5.504337 GCAGATCATTTCAGATCAACTCAGC 60.504 44.000 6.70 0.00 45.39 4.26
2541 2689 5.818336 AGATCATTTCAGATCAACTCAGCTG 59.182 40.000 7.63 7.63 45.39 4.24
2542 2690 3.688185 TCATTTCAGATCAACTCAGCTGC 59.312 43.478 9.47 0.00 0.00 5.25
2543 2691 2.105006 TTCAGATCAACTCAGCTGCC 57.895 50.000 9.47 0.00 0.00 4.85
2544 2692 0.108472 TCAGATCAACTCAGCTGCCG 60.108 55.000 9.47 4.98 0.00 5.69
2545 2693 0.390866 CAGATCAACTCAGCTGCCGT 60.391 55.000 9.47 5.70 0.00 5.68
2550 2698 1.146041 AACTCAGCTGCCGTGTTGA 59.854 52.632 9.47 0.00 0.00 3.18
2551 2699 1.160329 AACTCAGCTGCCGTGTTGAC 61.160 55.000 9.47 0.00 0.00 3.18
2558 2706 4.980805 GCCGTGTTGACCTGGCGA 62.981 66.667 0.00 0.00 37.81 5.54
2559 2707 2.738521 CCGTGTTGACCTGGCGAG 60.739 66.667 0.00 0.00 0.00 5.03
2560 2708 3.414700 CGTGTTGACCTGGCGAGC 61.415 66.667 0.00 0.00 0.00 5.03
2561 2709 2.280797 GTGTTGACCTGGCGAGCA 60.281 61.111 0.00 0.00 0.00 4.26
2562 2710 1.891919 GTGTTGACCTGGCGAGCAA 60.892 57.895 0.00 0.00 0.00 3.91
2564 2712 0.537143 TGTTGACCTGGCGAGCAAAT 60.537 50.000 0.00 0.00 0.00 2.32
2576 2724 2.948856 CGAGCAAATCGTTTCAGATCG 58.051 47.619 5.36 5.36 46.62 3.69
2578 2726 2.349886 GAGCAAATCGTTTCAGATCGCT 59.650 45.455 4.29 4.29 0.00 4.93
2581 2742 2.386661 AATCGTTTCAGATCGCTGGT 57.613 45.000 0.00 0.00 42.53 4.00
2584 2745 1.000394 TCGTTTCAGATCGCTGGTGAA 60.000 47.619 0.00 0.00 42.53 3.18
2595 2756 1.081094 GCTGGTGAATTTTGCATGGC 58.919 50.000 0.00 0.00 0.00 4.40
2640 2801 7.119709 TGCATCATCAATCATGGATTCTTTT 57.880 32.000 0.00 0.00 32.64 2.27
2642 2803 6.645415 GCATCATCAATCATGGATTCTTTTCC 59.355 38.462 0.00 0.00 36.24 3.13
2644 2805 5.300034 TCATCAATCATGGATTCTTTTCCGG 59.700 40.000 0.00 0.00 38.74 5.14
2645 2806 4.599041 TCAATCATGGATTCTTTTCCGGT 58.401 39.130 0.00 0.00 38.74 5.28
2646 2807 5.750524 TCAATCATGGATTCTTTTCCGGTA 58.249 37.500 0.00 0.00 38.74 4.02
2656 2821 1.326548 CTTTTCCGGTAAAGATCGCCG 59.673 52.381 24.75 12.01 44.55 6.46
2699 2864 4.704833 GACAAGGGAGGCGCTGCA 62.705 66.667 7.64 0.00 0.00 4.41
2711 2876 2.024918 CGCTGCACAGTTGGAAAGT 58.975 52.632 0.00 0.00 0.00 2.66
2770 2935 2.253452 CAAGTGAGCGTTGCTGCC 59.747 61.111 0.00 0.00 39.88 4.85
2771 2936 3.349006 AAGTGAGCGTTGCTGCCG 61.349 61.111 0.00 0.00 39.88 5.69
2899 3064 1.063174 GGCAACGCATCTGATCTGAAC 59.937 52.381 6.37 1.65 0.00 3.18
2921 3086 3.740495 TTGGCCCCGGCTGTGAAAA 62.740 57.895 0.00 0.00 41.60 2.29
2999 3164 3.054503 GCTGGCTGTGGCACTGAG 61.055 66.667 26.11 16.58 40.87 3.35
3011 3176 1.285950 CACTGAGCGACTGAACCGA 59.714 57.895 0.00 0.00 0.00 4.69
3054 3219 3.062042 CTCTTGCTTGCAATTTTGGACC 58.938 45.455 8.55 0.00 0.00 4.46
3055 3220 2.433604 TCTTGCTTGCAATTTTGGACCA 59.566 40.909 8.55 0.00 0.00 4.02
3057 3222 1.150827 GCTTGCAATTTTGGACCAGC 58.849 50.000 0.00 0.00 0.00 4.85
3067 3232 0.888736 TTGGACCAGCGTTCATGTGG 60.889 55.000 0.00 0.00 37.38 4.17
3097 3262 3.235200 TCAAAATTTTCATGGACCCGGT 58.765 40.909 0.00 0.00 0.00 5.28
3106 3271 0.833287 ATGGACCCGGTGATTCAGAG 59.167 55.000 0.00 0.00 0.00 3.35
3167 3334 2.101582 CTGGCCATCTGTACTGTACTCC 59.898 54.545 17.98 9.99 0.00 3.85
3168 3335 2.108168 GGCCATCTGTACTGTACTCCA 58.892 52.381 17.98 3.50 0.00 3.86
3175 3342 5.961396 TCTGTACTGTACTCCACTCTTTC 57.039 43.478 17.98 0.00 0.00 2.62
3182 3660 6.781943 ACTGTACTCCACTCTTTCTACTAGT 58.218 40.000 0.00 0.00 0.00 2.57
3183 3661 7.915930 ACTGTACTCCACTCTTTCTACTAGTA 58.084 38.462 1.89 1.89 0.00 1.82
3184 3662 8.042515 ACTGTACTCCACTCTTTCTACTAGTAG 58.957 40.741 21.87 21.87 34.56 2.57
3185 3663 7.915930 TGTACTCCACTCTTTCTACTAGTAGT 58.084 38.462 25.58 8.14 34.84 2.73
3258 3736 0.034337 TCTGGGCTGTCGGTTAACAC 59.966 55.000 8.10 0.00 0.00 3.32
3259 3737 0.953960 CTGGGCTGTCGGTTAACACC 60.954 60.000 8.10 0.00 40.16 4.16
3260 3738 1.071814 GGGCTGTCGGTTAACACCA 59.928 57.895 8.10 0.00 44.53 4.17
3261 3739 1.232621 GGGCTGTCGGTTAACACCAC 61.233 60.000 8.10 1.12 44.53 4.16
3262 3740 0.533308 GGCTGTCGGTTAACACCACA 60.533 55.000 8.10 5.73 44.53 4.17
3263 3741 1.301423 GCTGTCGGTTAACACCACAA 58.699 50.000 8.10 0.00 44.53 3.33
3264 3742 1.877443 GCTGTCGGTTAACACCACAAT 59.123 47.619 8.10 0.00 44.53 2.71
3265 3743 2.350388 GCTGTCGGTTAACACCACAATG 60.350 50.000 8.10 0.00 44.53 2.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.558554 AAATGGGTCGACCGAGCGAG 62.559 60.000 27.68 0.00 44.64 5.03
2 3 2.162338 AAAATGGGTCGACCGAGCGA 62.162 55.000 27.68 11.46 44.64 4.93
3 4 1.693083 GAAAATGGGTCGACCGAGCG 61.693 60.000 27.68 0.00 44.64 5.03
4 5 0.672401 TGAAAATGGGTCGACCGAGC 60.672 55.000 27.68 15.00 44.64 5.03
5 6 2.024176 ATGAAAATGGGTCGACCGAG 57.976 50.000 27.68 0.00 44.64 4.63
6 7 2.483014 AATGAAAATGGGTCGACCGA 57.517 45.000 27.68 25.05 44.64 4.69
7 8 2.159435 GGAAATGAAAATGGGTCGACCG 60.159 50.000 27.68 0.00 44.64 4.79
8 9 2.159435 CGGAAATGAAAATGGGTCGACC 60.159 50.000 27.04 27.04 40.81 4.79
9 10 2.159435 CCGGAAATGAAAATGGGTCGAC 60.159 50.000 7.13 7.13 0.00 4.20
10 11 2.088423 CCGGAAATGAAAATGGGTCGA 58.912 47.619 0.00 0.00 0.00 4.20
11 12 1.469079 GCCGGAAATGAAAATGGGTCG 60.469 52.381 5.05 0.00 0.00 4.79
12 13 1.548269 TGCCGGAAATGAAAATGGGTC 59.452 47.619 5.05 0.00 0.00 4.46
13 14 1.638529 TGCCGGAAATGAAAATGGGT 58.361 45.000 5.05 0.00 0.00 4.51
14 15 2.553086 CATGCCGGAAATGAAAATGGG 58.447 47.619 5.05 0.00 0.00 4.00
15 16 2.553086 CCATGCCGGAAATGAAAATGG 58.447 47.619 16.79 0.40 36.56 3.16
16 17 1.935199 GCCATGCCGGAAATGAAAATG 59.065 47.619 16.79 3.58 36.56 2.32
17 18 1.134431 GGCCATGCCGGAAATGAAAAT 60.134 47.619 16.79 0.00 39.62 1.82
18 19 0.248843 GGCCATGCCGGAAATGAAAA 59.751 50.000 16.79 0.00 39.62 2.29
19 20 1.896694 GGCCATGCCGGAAATGAAA 59.103 52.632 16.79 0.00 39.62 2.69
20 21 3.614806 GGCCATGCCGGAAATGAA 58.385 55.556 16.79 0.00 39.62 2.57
31 32 4.181010 CTCCACTCCCCGGCCATG 62.181 72.222 2.24 0.00 0.00 3.66
32 33 4.414956 TCTCCACTCCCCGGCCAT 62.415 66.667 2.24 0.00 0.00 4.40
38 39 3.775654 CTGCCGTCTCCACTCCCC 61.776 72.222 0.00 0.00 0.00 4.81
39 40 4.459089 GCTGCCGTCTCCACTCCC 62.459 72.222 0.00 0.00 0.00 4.30
40 41 3.655810 CTGCTGCCGTCTCCACTCC 62.656 68.421 0.00 0.00 0.00 3.85
41 42 2.125753 CTGCTGCCGTCTCCACTC 60.126 66.667 0.00 0.00 0.00 3.51
42 43 4.385405 GCTGCTGCCGTCTCCACT 62.385 66.667 3.85 0.00 0.00 4.00
43 44 2.578163 TATGCTGCTGCCGTCTCCAC 62.578 60.000 13.47 0.00 38.71 4.02
44 45 2.358372 TATGCTGCTGCCGTCTCCA 61.358 57.895 13.47 0.00 38.71 3.86
45 46 1.884926 GTATGCTGCTGCCGTCTCC 60.885 63.158 13.47 0.00 38.71 3.71
46 47 2.233654 CGTATGCTGCTGCCGTCTC 61.234 63.158 13.47 0.00 38.71 3.36
47 48 2.202797 CGTATGCTGCTGCCGTCT 60.203 61.111 13.47 0.00 38.71 4.18
48 49 3.929948 GCGTATGCTGCTGCCGTC 61.930 66.667 13.47 2.42 38.71 4.79
49 50 4.758251 TGCGTATGCTGCTGCCGT 62.758 61.111 13.47 4.54 43.34 5.68
50 51 3.232645 GATGCGTATGCTGCTGCCG 62.233 63.158 13.47 10.42 43.34 5.69
51 52 1.512996 ATGATGCGTATGCTGCTGCC 61.513 55.000 13.47 0.00 43.34 4.85
52 53 0.110328 GATGATGCGTATGCTGCTGC 60.110 55.000 8.89 8.89 43.34 5.25
53 54 1.223187 TGATGATGCGTATGCTGCTG 58.777 50.000 8.69 0.00 43.34 4.41
54 55 2.074576 GATGATGATGCGTATGCTGCT 58.925 47.619 8.69 0.00 43.34 4.24
55 56 2.074576 AGATGATGATGCGTATGCTGC 58.925 47.619 8.69 0.00 43.34 5.25
56 57 3.323243 TGAGATGATGATGCGTATGCTG 58.677 45.455 8.69 0.00 43.34 4.41
57 58 3.672767 TGAGATGATGATGCGTATGCT 57.327 42.857 8.69 0.00 43.34 3.79
58 59 3.930848 TGATGAGATGATGATGCGTATGC 59.069 43.478 0.00 0.00 43.20 3.14
59 60 6.073440 TGTTTGATGAGATGATGATGCGTATG 60.073 38.462 0.00 0.00 0.00 2.39
60 61 5.993441 TGTTTGATGAGATGATGATGCGTAT 59.007 36.000 0.00 0.00 0.00 3.06
61 62 5.358922 TGTTTGATGAGATGATGATGCGTA 58.641 37.500 0.00 0.00 0.00 4.42
62 63 4.193865 TGTTTGATGAGATGATGATGCGT 58.806 39.130 0.00 0.00 0.00 5.24
63 64 4.806342 TGTTTGATGAGATGATGATGCG 57.194 40.909 0.00 0.00 0.00 4.73
64 65 6.313744 TGATGTTTGATGAGATGATGATGC 57.686 37.500 0.00 0.00 0.00 3.91
82 83 8.677300 CCAAGTTGCACTAGTATTTATTGATGT 58.323 33.333 0.00 0.00 0.00 3.06
83 84 7.645340 GCCAAGTTGCACTAGTATTTATTGATG 59.355 37.037 0.00 0.00 0.00 3.07
84 85 7.557719 AGCCAAGTTGCACTAGTATTTATTGAT 59.442 33.333 0.00 0.00 0.00 2.57
85 86 6.884295 AGCCAAGTTGCACTAGTATTTATTGA 59.116 34.615 0.00 0.00 0.00 2.57
86 87 7.088589 AGCCAAGTTGCACTAGTATTTATTG 57.911 36.000 0.00 0.00 0.00 1.90
87 88 6.318900 GGAGCCAAGTTGCACTAGTATTTATT 59.681 38.462 0.00 0.00 0.00 1.40
88 89 5.823045 GGAGCCAAGTTGCACTAGTATTTAT 59.177 40.000 0.00 0.00 0.00 1.40
89 90 5.045869 AGGAGCCAAGTTGCACTAGTATTTA 60.046 40.000 0.00 0.00 0.00 1.40
90 91 4.010349 GGAGCCAAGTTGCACTAGTATTT 58.990 43.478 0.00 0.00 0.00 1.40
91 92 3.264450 AGGAGCCAAGTTGCACTAGTATT 59.736 43.478 0.00 0.00 0.00 1.89
92 93 2.840651 AGGAGCCAAGTTGCACTAGTAT 59.159 45.455 0.00 0.00 0.00 2.12
93 94 2.028112 CAGGAGCCAAGTTGCACTAGTA 60.028 50.000 0.00 0.00 0.00 1.82
94 95 1.059913 AGGAGCCAAGTTGCACTAGT 58.940 50.000 0.00 0.00 0.00 2.57
95 96 1.002430 TCAGGAGCCAAGTTGCACTAG 59.998 52.381 0.00 0.00 0.00 2.57
96 97 1.055849 TCAGGAGCCAAGTTGCACTA 58.944 50.000 0.00 0.00 0.00 2.74
97 98 0.536006 GTCAGGAGCCAAGTTGCACT 60.536 55.000 0.00 0.00 0.00 4.40
98 99 0.536006 AGTCAGGAGCCAAGTTGCAC 60.536 55.000 0.00 0.00 0.00 4.57
99 100 0.250467 GAGTCAGGAGCCAAGTTGCA 60.250 55.000 0.00 0.00 0.00 4.08
100 101 0.957888 GGAGTCAGGAGCCAAGTTGC 60.958 60.000 0.00 0.00 0.00 4.17
101 102 0.322008 GGGAGTCAGGAGCCAAGTTG 60.322 60.000 0.00 0.00 0.00 3.16
102 103 0.768221 TGGGAGTCAGGAGCCAAGTT 60.768 55.000 0.00 0.00 0.00 2.66
103 104 0.548682 ATGGGAGTCAGGAGCCAAGT 60.549 55.000 0.00 0.00 0.00 3.16
104 105 0.179936 GATGGGAGTCAGGAGCCAAG 59.820 60.000 0.00 0.00 0.00 3.61
105 106 0.547471 TGATGGGAGTCAGGAGCCAA 60.547 55.000 0.00 0.00 0.00 4.52
106 107 0.326904 ATGATGGGAGTCAGGAGCCA 60.327 55.000 0.00 0.00 0.00 4.75
107 108 0.842635 AATGATGGGAGTCAGGAGCC 59.157 55.000 0.00 0.00 0.00 4.70
108 109 2.092753 TGAAATGATGGGAGTCAGGAGC 60.093 50.000 0.00 0.00 0.00 4.70
109 110 3.920231 TGAAATGATGGGAGTCAGGAG 57.080 47.619 0.00 0.00 0.00 3.69
110 111 4.868172 AATGAAATGATGGGAGTCAGGA 57.132 40.909 0.00 0.00 0.00 3.86
111 112 4.951715 TGAAATGAAATGATGGGAGTCAGG 59.048 41.667 0.00 0.00 0.00 3.86
112 113 6.710597 ATGAAATGAAATGATGGGAGTCAG 57.289 37.500 0.00 0.00 0.00 3.51
113 114 7.178805 TGAAATGAAATGAAATGATGGGAGTCA 59.821 33.333 0.00 0.00 0.00 3.41
114 115 7.549839 TGAAATGAAATGAAATGATGGGAGTC 58.450 34.615 0.00 0.00 0.00 3.36
115 116 7.484993 TGAAATGAAATGAAATGATGGGAGT 57.515 32.000 0.00 0.00 0.00 3.85
116 117 8.958119 AATGAAATGAAATGAAATGATGGGAG 57.042 30.769 0.00 0.00 0.00 4.30
122 123 9.722184 TGGCTTTAATGAAATGAAATGAAATGA 57.278 25.926 0.00 0.00 0.00 2.57
126 127 9.775854 TCTTTGGCTTTAATGAAATGAAATGAA 57.224 25.926 0.00 0.00 0.00 2.57
127 128 9.775854 TTCTTTGGCTTTAATGAAATGAAATGA 57.224 25.926 0.00 0.00 0.00 2.57
137 138 8.505625 GCAATTTCATTTCTTTGGCTTTAATGA 58.494 29.630 0.00 0.00 34.44 2.57
138 139 8.291032 TGCAATTTCATTTCTTTGGCTTTAATG 58.709 29.630 0.00 0.00 0.00 1.90
139 140 8.291740 GTGCAATTTCATTTCTTTGGCTTTAAT 58.708 29.630 0.00 0.00 0.00 1.40
140 141 7.498570 AGTGCAATTTCATTTCTTTGGCTTTAA 59.501 29.630 0.00 0.00 0.00 1.52
141 142 6.991531 AGTGCAATTTCATTTCTTTGGCTTTA 59.008 30.769 0.00 0.00 0.00 1.85
142 143 5.824097 AGTGCAATTTCATTTCTTTGGCTTT 59.176 32.000 0.00 0.00 0.00 3.51
143 144 5.370679 AGTGCAATTTCATTTCTTTGGCTT 58.629 33.333 0.00 0.00 0.00 4.35
144 145 4.964593 AGTGCAATTTCATTTCTTTGGCT 58.035 34.783 0.00 0.00 0.00 4.75
145 146 6.369615 ACATAGTGCAATTTCATTTCTTTGGC 59.630 34.615 0.00 0.00 0.00 4.52
146 147 7.894376 ACATAGTGCAATTTCATTTCTTTGG 57.106 32.000 0.00 0.00 0.00 3.28
147 148 8.157813 CGAACATAGTGCAATTTCATTTCTTTG 58.842 33.333 0.00 0.00 0.00 2.77
148 149 7.867403 ACGAACATAGTGCAATTTCATTTCTTT 59.133 29.630 0.00 0.00 0.00 2.52
149 150 7.370383 ACGAACATAGTGCAATTTCATTTCTT 58.630 30.769 0.00 0.00 0.00 2.52
150 151 6.913170 ACGAACATAGTGCAATTTCATTTCT 58.087 32.000 0.00 0.00 0.00 2.52
151 152 7.044706 GCTACGAACATAGTGCAATTTCATTTC 60.045 37.037 0.00 0.00 0.00 2.17
152 153 6.747280 GCTACGAACATAGTGCAATTTCATTT 59.253 34.615 0.00 0.00 0.00 2.32
153 154 6.128035 TGCTACGAACATAGTGCAATTTCATT 60.128 34.615 0.00 0.00 0.00 2.57
154 155 5.353956 TGCTACGAACATAGTGCAATTTCAT 59.646 36.000 0.00 0.00 0.00 2.57
155 156 4.693095 TGCTACGAACATAGTGCAATTTCA 59.307 37.500 0.00 0.00 0.00 2.69
156 157 5.216566 TGCTACGAACATAGTGCAATTTC 57.783 39.130 0.00 0.00 0.00 2.17
157 158 5.390613 GTTGCTACGAACATAGTGCAATTT 58.609 37.500 0.00 0.00 37.66 1.82
158 159 4.142687 GGTTGCTACGAACATAGTGCAATT 60.143 41.667 0.00 0.00 37.66 2.32
159 160 3.374058 GGTTGCTACGAACATAGTGCAAT 59.626 43.478 0.00 0.00 37.66 3.56
160 161 2.739913 GGTTGCTACGAACATAGTGCAA 59.260 45.455 0.00 0.00 35.21 4.08
161 162 2.289133 TGGTTGCTACGAACATAGTGCA 60.289 45.455 0.00 0.00 0.00 4.57
162 163 2.343101 TGGTTGCTACGAACATAGTGC 58.657 47.619 0.00 0.00 0.00 4.40
163 164 3.994392 ACTTGGTTGCTACGAACATAGTG 59.006 43.478 0.00 0.00 0.00 2.74
164 165 3.994392 CACTTGGTTGCTACGAACATAGT 59.006 43.478 0.00 0.00 0.00 2.12
165 166 3.370978 CCACTTGGTTGCTACGAACATAG 59.629 47.826 0.00 0.00 0.00 2.23
166 167 3.007074 TCCACTTGGTTGCTACGAACATA 59.993 43.478 0.00 0.00 36.34 2.29
167 168 2.151202 CCACTTGGTTGCTACGAACAT 58.849 47.619 0.00 0.00 0.00 2.71
168 169 1.139256 TCCACTTGGTTGCTACGAACA 59.861 47.619 0.00 0.00 36.34 3.18
169 170 1.798813 CTCCACTTGGTTGCTACGAAC 59.201 52.381 0.00 0.00 36.34 3.95
170 171 1.689813 TCTCCACTTGGTTGCTACGAA 59.310 47.619 0.00 0.00 36.34 3.85
171 172 1.272490 CTCTCCACTTGGTTGCTACGA 59.728 52.381 0.00 0.00 36.34 3.43
172 173 1.272490 TCTCTCCACTTGGTTGCTACG 59.728 52.381 0.00 0.00 36.34 3.51
211 213 1.077068 CGGAGAGGAGAGGCTCTGT 60.077 63.158 24.21 8.91 33.77 3.41
212 214 2.489275 GCGGAGAGGAGAGGCTCTG 61.489 68.421 24.21 6.57 39.86 3.35
215 217 2.351924 CTAGGCGGAGAGGAGAGGCT 62.352 65.000 0.00 0.00 42.27 4.58
216 218 1.901464 CTAGGCGGAGAGGAGAGGC 60.901 68.421 0.00 0.00 0.00 4.70
217 219 1.228429 CCTAGGCGGAGAGGAGAGG 60.228 68.421 0.00 0.00 34.46 3.69
218 220 1.901464 GCCTAGGCGGAGAGGAGAG 60.901 68.421 20.16 0.00 34.46 3.20
219 221 2.196229 GCCTAGGCGGAGAGGAGA 59.804 66.667 20.16 0.00 34.46 3.71
250 252 3.557508 TCGTGCATTGTACGATATACGG 58.442 45.455 23.22 10.41 44.65 4.02
258 260 4.138817 GTTGTAGTTTCGTGCATTGTACG 58.861 43.478 19.44 19.44 42.56 3.67
259 261 4.084952 TCGTTGTAGTTTCGTGCATTGTAC 60.085 41.667 0.00 0.00 0.00 2.90
261 263 2.867368 TCGTTGTAGTTTCGTGCATTGT 59.133 40.909 0.00 0.00 0.00 2.71
262 264 3.513462 TCGTTGTAGTTTCGTGCATTG 57.487 42.857 0.00 0.00 0.00 2.82
263 265 3.558418 ACTTCGTTGTAGTTTCGTGCATT 59.442 39.130 0.00 0.00 0.00 3.56
266 268 4.442073 TCTTACTTCGTTGTAGTTTCGTGC 59.558 41.667 0.00 0.00 0.00 5.34
269 271 6.852853 TGTACTCTTACTTCGTTGTAGTTTCG 59.147 38.462 0.00 0.00 0.00 3.46
270 272 7.859875 ACTGTACTCTTACTTCGTTGTAGTTTC 59.140 37.037 0.00 0.00 0.00 2.78
271 273 7.710896 ACTGTACTCTTACTTCGTTGTAGTTT 58.289 34.615 0.00 0.00 0.00 2.66
272 274 7.269477 ACTGTACTCTTACTTCGTTGTAGTT 57.731 36.000 0.00 0.00 0.00 2.24
274 276 8.027440 AGTACTGTACTCTTACTTCGTTGTAG 57.973 38.462 14.53 0.00 32.47 2.74
275 277 7.969536 AGTACTGTACTCTTACTTCGTTGTA 57.030 36.000 14.53 0.00 32.47 2.41
276 278 6.874288 AGTACTGTACTCTTACTTCGTTGT 57.126 37.500 14.53 0.00 32.47 3.32
289 291 8.202137 TCTTAAACAAAAGCAGAGTACTGTACT 58.798 33.333 19.79 19.79 45.04 2.73
290 292 8.361592 TCTTAAACAAAAGCAGAGTACTGTAC 57.638 34.615 9.93 9.93 45.04 2.90
304 306 7.968405 GCACTCTGTTTTCTCTCTTAAACAAAA 59.032 33.333 0.00 0.00 41.96 2.44
318 320 2.480845 ACGTACTGGCACTCTGTTTTC 58.519 47.619 0.00 0.00 0.00 2.29
319 321 2.614829 ACGTACTGGCACTCTGTTTT 57.385 45.000 0.00 0.00 0.00 2.43
321 323 2.626743 AGTAACGTACTGGCACTCTGTT 59.373 45.455 0.00 0.00 37.69 3.16
323 325 2.728225 CGAGTAACGTACTGGCACTCTG 60.728 54.545 0.00 3.56 39.59 3.35
324 326 1.467734 CGAGTAACGTACTGGCACTCT 59.532 52.381 0.00 0.00 39.59 3.24
325 327 1.467035 CCGAGTAACGTACTGGCACTC 60.467 57.143 0.00 0.00 39.59 3.51
326 328 0.524862 CCGAGTAACGTACTGGCACT 59.475 55.000 0.00 0.00 39.59 4.40
327 329 0.242017 ACCGAGTAACGTACTGGCAC 59.758 55.000 0.00 0.00 39.59 5.01
328 330 0.523072 GACCGAGTAACGTACTGGCA 59.477 55.000 0.00 0.00 39.59 4.92
329 331 0.522076 CGACCGAGTAACGTACTGGC 60.522 60.000 0.00 0.00 39.59 4.85
330 332 0.097674 CCGACCGAGTAACGTACTGG 59.902 60.000 0.00 1.06 39.59 4.00
331 333 0.798776 ACCGACCGAGTAACGTACTG 59.201 55.000 0.00 0.00 39.59 2.74
343 345 3.449227 TGCTCTGCCTACCGACCG 61.449 66.667 0.00 0.00 0.00 4.79
346 348 4.129737 GCGTGCTCTGCCTACCGA 62.130 66.667 0.00 0.00 0.00 4.69
347 349 3.723235 ATGCGTGCTCTGCCTACCG 62.723 63.158 0.00 0.00 0.00 4.02
348 350 1.884926 GATGCGTGCTCTGCCTACC 60.885 63.158 0.00 0.00 0.00 3.18
349 351 2.233654 CGATGCGTGCTCTGCCTAC 61.234 63.158 0.00 0.00 0.00 3.18
350 352 2.104928 CGATGCGTGCTCTGCCTA 59.895 61.111 0.00 0.00 0.00 3.93
385 387 2.623416 ACTTTTGCAGGACTAGTTTGGC 59.377 45.455 0.00 1.60 0.00 4.52
387 389 5.499139 TTGACTTTTGCAGGACTAGTTTG 57.501 39.130 0.00 0.07 0.00 2.93
395 399 6.071952 GGAATTGAGTATTGACTTTTGCAGGA 60.072 38.462 0.00 0.00 35.45 3.86
424 428 1.602605 GGGCCGTGCTTAGTTTGGT 60.603 57.895 0.00 0.00 0.00 3.67
428 432 0.889186 CACTTGGGCCGTGCTTAGTT 60.889 55.000 0.00 0.00 0.00 2.24
429 433 1.302511 CACTTGGGCCGTGCTTAGT 60.303 57.895 0.00 0.00 0.00 2.24
446 471 1.069090 GAGCAGGTTCGGTGTGTCA 59.931 57.895 0.00 0.00 0.00 3.58
526 552 2.281484 CGACTGTGGGTTGTGGGG 60.281 66.667 0.00 0.00 0.00 4.96
530 556 0.253610 TTTGACCGACTGTGGGTTGT 59.746 50.000 15.86 0.00 38.07 3.32
532 558 1.142060 TGATTTGACCGACTGTGGGTT 59.858 47.619 15.86 0.00 38.07 4.11
533 559 0.762418 TGATTTGACCGACTGTGGGT 59.238 50.000 14.69 14.69 41.48 4.51
541 567 2.858646 GCGATCGATCTGATTTGACCGA 60.859 50.000 21.57 6.37 37.47 4.69
547 573 2.604914 GTGTGTGCGATCGATCTGATTT 59.395 45.455 21.57 0.00 37.47 2.17
573 599 1.375908 GTCGTTGATCTGCCTGCCA 60.376 57.895 0.00 0.00 0.00 4.92
577 603 1.296715 GTGGGTCGTTGATCTGCCT 59.703 57.895 0.00 0.00 0.00 4.75
578 604 0.605319 TTGTGGGTCGTTGATCTGCC 60.605 55.000 0.00 0.00 0.00 4.85
604 630 1.433064 GCTGCGTGGAGAGAGAGAG 59.567 63.158 0.00 0.00 0.00 3.20
605 631 2.402572 CGCTGCGTGGAGAGAGAGA 61.403 63.158 14.93 0.00 0.00 3.10
606 632 1.723608 ATCGCTGCGTGGAGAGAGAG 61.724 60.000 22.48 0.00 0.00 3.20
618 644 1.374631 TGGTGACAGACATCGCTGC 60.375 57.895 0.00 0.00 39.51 5.25
634 660 2.158460 AGAGGGGAAAACAAAGAGGTGG 60.158 50.000 0.00 0.00 0.00 4.61
635 661 2.887152 CAGAGGGGAAAACAAAGAGGTG 59.113 50.000 0.00 0.00 0.00 4.00
636 662 2.753168 GCAGAGGGGAAAACAAAGAGGT 60.753 50.000 0.00 0.00 0.00 3.85
637 663 1.889170 GCAGAGGGGAAAACAAAGAGG 59.111 52.381 0.00 0.00 0.00 3.69
638 664 2.586425 TGCAGAGGGGAAAACAAAGAG 58.414 47.619 0.00 0.00 0.00 2.85
641 667 5.779771 AGAATTATGCAGAGGGGAAAACAAA 59.220 36.000 0.00 0.00 0.00 2.83
642 668 5.332743 AGAATTATGCAGAGGGGAAAACAA 58.667 37.500 0.00 0.00 0.00 2.83
643 669 4.934356 AGAATTATGCAGAGGGGAAAACA 58.066 39.130 0.00 0.00 0.00 2.83
686 724 1.666011 GTGAGCTCACCGTTGGAGA 59.334 57.895 32.55 0.00 40.85 3.71
790 830 1.668101 GAGAGACCGGGCGAGATTGT 61.668 60.000 6.32 0.00 0.00 2.71
791 831 1.066587 GAGAGACCGGGCGAGATTG 59.933 63.158 6.32 0.00 0.00 2.67
792 832 1.076632 AGAGAGACCGGGCGAGATT 60.077 57.895 6.32 0.00 0.00 2.40
793 833 1.527380 GAGAGAGACCGGGCGAGAT 60.527 63.158 6.32 0.00 0.00 2.75
794 834 2.124653 GAGAGAGACCGGGCGAGA 60.125 66.667 6.32 0.00 0.00 4.04
795 835 2.124487 AGAGAGAGACCGGGCGAG 60.124 66.667 6.32 0.00 0.00 5.03
796 836 2.124653 GAGAGAGAGACCGGGCGA 60.125 66.667 6.32 0.00 0.00 5.54
797 837 2.124487 AGAGAGAGAGACCGGGCG 60.124 66.667 6.32 0.00 0.00 6.13
798 838 0.818040 GAGAGAGAGAGAGACCGGGC 60.818 65.000 6.32 0.52 0.00 6.13
799 839 0.837272 AGAGAGAGAGAGAGACCGGG 59.163 60.000 6.32 0.00 0.00 5.73
800 840 1.953559 CAGAGAGAGAGAGAGACCGG 58.046 60.000 0.00 0.00 0.00 5.28
801 841 1.299541 GCAGAGAGAGAGAGAGACCG 58.700 60.000 0.00 0.00 0.00 4.79
802 842 1.680338 GGCAGAGAGAGAGAGAGACC 58.320 60.000 0.00 0.00 0.00 3.85
803 843 1.299541 CGGCAGAGAGAGAGAGAGAC 58.700 60.000 0.00 0.00 0.00 3.36
804 844 0.463654 GCGGCAGAGAGAGAGAGAGA 60.464 60.000 0.00 0.00 0.00 3.10
808 848 1.189752 AATTGCGGCAGAGAGAGAGA 58.810 50.000 1.67 0.00 0.00 3.10
809 849 2.021355 AAATTGCGGCAGAGAGAGAG 57.979 50.000 1.67 0.00 0.00 3.20
985 1043 1.065854 GCTCATGGTCCTTGTAGTGCT 60.066 52.381 4.76 0.00 0.00 4.40
987 1045 2.744202 GTTGCTCATGGTCCTTGTAGTG 59.256 50.000 4.76 0.00 0.00 2.74
1089 1151 2.125512 AAGACGATCGCCAGCACC 60.126 61.111 16.60 0.00 0.00 5.01
1963 2085 3.890936 GAGGCTGCTGCTTCCGTGT 62.891 63.158 15.61 0.00 39.09 4.49
2065 2187 2.609921 GTCGGGGTCCCCTTTCCT 60.610 66.667 25.34 0.00 42.67 3.36
2122 2244 4.400961 GTCCTTGCTGCCGCTCCT 62.401 66.667 0.70 0.00 36.97 3.69
2300 2425 2.805353 CGACTCGGTTGGACTGCG 60.805 66.667 0.00 0.00 0.00 5.18
2313 2438 1.302591 TCACGAGCAGTCTCCGACT 60.303 57.895 0.00 0.00 44.44 4.18
2336 2461 0.177836 TCGACAATGGCGATGATGGT 59.822 50.000 7.28 0.00 32.09 3.55
2337 2462 1.516161 ATCGACAATGGCGATGATGG 58.484 50.000 24.41 0.00 45.74 3.51
2360 2485 4.037446 TCATTTTTCTCTTTCGTTGGGGTG 59.963 41.667 0.00 0.00 0.00 4.61
2381 2510 8.839310 TGAACAAAAGAAAGAATTTGGTTTCA 57.161 26.923 10.00 2.84 39.27 2.69
2386 2515 9.586435 ACTAACTGAACAAAAGAAAGAATTTGG 57.414 29.630 3.63 0.00 39.27 3.28
2413 2542 7.780745 ACGGAGGAAGAAGAAGAGATTCTTATA 59.219 37.037 3.36 0.00 44.85 0.98
2443 2572 1.421410 GCAACCACTGGCGATCTACG 61.421 60.000 0.00 0.00 45.66 3.51
2455 2584 1.608093 CGCTGCGAATTTGCAACCAC 61.608 55.000 20.68 9.97 45.74 4.16
2458 2587 2.719774 GCCGCTGCGAATTTGCAAC 61.720 57.895 25.45 15.51 45.74 4.17
2480 2609 9.841295 GATCTTGTGGGTTTTACAGGTTATATA 57.159 33.333 0.00 0.00 0.00 0.86
2481 2610 7.778382 GGATCTTGTGGGTTTTACAGGTTATAT 59.222 37.037 0.00 0.00 0.00 0.86
2482 2611 7.114095 GGATCTTGTGGGTTTTACAGGTTATA 58.886 38.462 0.00 0.00 0.00 0.98
2483 2612 5.949952 GGATCTTGTGGGTTTTACAGGTTAT 59.050 40.000 0.00 0.00 0.00 1.89
2484 2613 5.318630 GGATCTTGTGGGTTTTACAGGTTA 58.681 41.667 0.00 0.00 0.00 2.85
2501 2630 1.417145 GATCTGCTGCTGAGGGATCTT 59.583 52.381 14.50 0.00 32.58 2.40
2507 2636 2.614520 CTGAAATGATCTGCTGCTGAGG 59.385 50.000 14.50 0.00 0.00 3.86
2511 2659 4.152284 TGATCTGAAATGATCTGCTGCT 57.848 40.909 0.00 0.00 42.30 4.24
2512 2660 4.335874 AGTTGATCTGAAATGATCTGCTGC 59.664 41.667 0.00 0.00 42.30 5.25
2513 2661 5.585047 TGAGTTGATCTGAAATGATCTGCTG 59.415 40.000 6.15 0.00 42.30 4.41
2514 2662 5.742063 TGAGTTGATCTGAAATGATCTGCT 58.258 37.500 6.15 4.35 42.30 4.24
2515 2663 5.504337 GCTGAGTTGATCTGAAATGATCTGC 60.504 44.000 6.15 0.00 42.30 4.26
2516 2664 5.818336 AGCTGAGTTGATCTGAAATGATCTG 59.182 40.000 6.15 0.00 42.30 2.90
2517 2665 5.818336 CAGCTGAGTTGATCTGAAATGATCT 59.182 40.000 8.42 0.00 42.30 2.75
2518 2666 5.504337 GCAGCTGAGTTGATCTGAAATGATC 60.504 44.000 20.43 0.00 42.19 2.92
2519 2667 4.335874 GCAGCTGAGTTGATCTGAAATGAT 59.664 41.667 20.43 0.00 0.00 2.45
2520 2668 3.688185 GCAGCTGAGTTGATCTGAAATGA 59.312 43.478 20.43 0.00 0.00 2.57
2521 2669 3.181499 GGCAGCTGAGTTGATCTGAAATG 60.181 47.826 20.43 0.00 0.00 2.32
2522 2670 3.015327 GGCAGCTGAGTTGATCTGAAAT 58.985 45.455 20.43 0.00 0.00 2.17
2523 2671 2.430465 GGCAGCTGAGTTGATCTGAAA 58.570 47.619 20.43 0.00 0.00 2.69
2524 2672 1.673923 CGGCAGCTGAGTTGATCTGAA 60.674 52.381 20.43 0.00 0.00 3.02
2529 2677 0.250467 AACACGGCAGCTGAGTTGAT 60.250 50.000 20.43 1.69 0.00 2.57
2530 2678 1.146041 AACACGGCAGCTGAGTTGA 59.854 52.632 20.43 0.00 0.00 3.18
2531 2679 1.159713 TCAACACGGCAGCTGAGTTG 61.160 55.000 29.10 29.10 40.73 3.16
2532 2680 1.146041 TCAACACGGCAGCTGAGTT 59.854 52.632 20.43 10.01 0.00 3.01
2533 2681 1.595382 GTCAACACGGCAGCTGAGT 60.595 57.895 20.43 13.87 0.00 3.41
2534 2682 2.320587 GGTCAACACGGCAGCTGAG 61.321 63.158 20.43 13.14 0.00 3.35
2535 2683 2.280797 GGTCAACACGGCAGCTGA 60.281 61.111 20.43 0.00 0.00 4.26
2536 2684 2.281070 AGGTCAACACGGCAGCTG 60.281 61.111 10.11 10.11 0.00 4.24
2537 2685 2.281070 CAGGTCAACACGGCAGCT 60.281 61.111 0.00 0.00 0.00 4.24
2538 2686 3.357079 CCAGGTCAACACGGCAGC 61.357 66.667 0.00 0.00 0.00 5.25
2539 2687 3.357079 GCCAGGTCAACACGGCAG 61.357 66.667 7.07 0.00 44.25 4.85
2541 2689 4.980805 TCGCCAGGTCAACACGGC 62.981 66.667 0.00 0.00 41.30 5.68
2542 2690 2.738521 CTCGCCAGGTCAACACGG 60.739 66.667 0.00 0.00 0.00 4.94
2543 2691 3.414700 GCTCGCCAGGTCAACACG 61.415 66.667 0.00 0.00 0.00 4.49
2544 2692 1.444119 TTTGCTCGCCAGGTCAACAC 61.444 55.000 0.00 0.00 0.00 3.32
2545 2693 0.537143 ATTTGCTCGCCAGGTCAACA 60.537 50.000 0.00 0.00 0.00 3.33
2558 2706 2.094894 CAGCGATCTGAAACGATTTGCT 59.905 45.455 10.75 0.00 42.95 3.91
2559 2707 2.434761 CAGCGATCTGAAACGATTTGC 58.565 47.619 10.75 0.00 42.95 3.68
2560 2708 2.416547 ACCAGCGATCTGAAACGATTTG 59.583 45.455 10.75 6.21 42.95 2.32
2561 2709 2.416547 CACCAGCGATCTGAAACGATTT 59.583 45.455 10.75 0.00 42.95 2.17
2562 2710 2.002586 CACCAGCGATCTGAAACGATT 58.997 47.619 10.75 0.00 42.95 3.34
2564 2712 0.601057 TCACCAGCGATCTGAAACGA 59.399 50.000 10.75 0.00 42.95 3.85
2566 2714 4.425577 AAATTCACCAGCGATCTGAAAC 57.574 40.909 0.00 0.00 42.95 2.78
2567 2715 4.797471 CAAAATTCACCAGCGATCTGAAA 58.203 39.130 0.00 0.00 42.95 2.69
2568 2716 3.366273 GCAAAATTCACCAGCGATCTGAA 60.366 43.478 0.00 0.00 42.95 3.02
2572 2720 2.634982 TGCAAAATTCACCAGCGATC 57.365 45.000 0.00 0.00 0.00 3.69
2573 2721 2.417651 CCATGCAAAATTCACCAGCGAT 60.418 45.455 0.00 0.00 0.00 4.58
2574 2722 1.067706 CCATGCAAAATTCACCAGCGA 60.068 47.619 0.00 0.00 0.00 4.93
2575 2723 1.352114 CCATGCAAAATTCACCAGCG 58.648 50.000 0.00 0.00 0.00 5.18
2576 2724 1.081094 GCCATGCAAAATTCACCAGC 58.919 50.000 0.00 0.00 0.00 4.85
2578 2726 1.608542 GCTGCCATGCAAAATTCACCA 60.609 47.619 0.00 0.00 38.41 4.17
2581 2742 1.942127 GCTGCTGCCATGCAAAATTCA 60.942 47.619 3.85 0.00 42.83 2.57
2584 2745 0.391130 CTGCTGCTGCCATGCAAAAT 60.391 50.000 13.47 0.00 42.83 1.82
2595 2756 1.654954 GCACCTCCAATCTGCTGCTG 61.655 60.000 0.00 0.00 0.00 4.41
2640 2801 0.313043 GATCGGCGATCTTTACCGGA 59.687 55.000 35.59 0.39 46.87 5.14
2644 2805 4.143030 CCATGATTGATCGGCGATCTTTAC 60.143 45.833 39.57 28.85 39.56 2.01
2645 2806 3.996363 CCATGATTGATCGGCGATCTTTA 59.004 43.478 39.57 28.09 39.56 1.85
2646 2807 2.810274 CCATGATTGATCGGCGATCTTT 59.190 45.455 39.57 29.68 39.56 2.52
2656 2821 0.167470 CCGCATCGCCATGATTGATC 59.833 55.000 0.00 0.00 34.13 2.92
2699 2864 3.642141 ACAAATCCCACTTTCCAACTGT 58.358 40.909 0.00 0.00 0.00 3.55
2711 2876 2.226330 CGACAGACCAAACAAATCCCA 58.774 47.619 0.00 0.00 0.00 4.37
2775 2940 3.349006 GACTGTGCTGTGGTGGCG 61.349 66.667 0.00 0.00 0.00 5.69
2776 2941 2.980233 GGACTGTGCTGTGGTGGC 60.980 66.667 0.00 0.00 0.00 5.01
2921 3086 0.108186 TCCGCGTTGATCTGCATCTT 60.108 50.000 4.92 0.00 0.00 2.40
2946 3111 1.359130 TCTGGAGGTGATGACAGGAGA 59.641 52.381 0.00 0.00 0.00 3.71
2999 3164 2.811317 CTGGCTCGGTTCAGTCGC 60.811 66.667 0.00 0.00 0.00 5.19
3054 3219 0.387622 CTTTGGCCACATGAACGCTG 60.388 55.000 3.88 0.00 0.00 5.18
3055 3220 0.537143 TCTTTGGCCACATGAACGCT 60.537 50.000 3.88 0.00 0.00 5.07
3057 3222 2.228582 TGAATCTTTGGCCACATGAACG 59.771 45.455 3.88 0.00 0.00 3.95
3067 3232 7.300320 GTCCATGAAAATTTTGAATCTTTGGC 58.700 34.615 8.47 0.00 0.00 4.52
3097 3262 5.964477 AGTATCCTGGTAAACCTCTGAATCA 59.036 40.000 0.02 0.00 36.82 2.57
3151 3316 5.906113 AAGAGTGGAGTACAGTACAGATG 57.094 43.478 13.37 0.00 31.34 2.90
3167 3334 9.615295 GACTCAAAACTACTAGTAGAAAGAGTG 57.385 37.037 31.72 22.29 36.19 3.51
3168 3335 9.352191 TGACTCAAAACTACTAGTAGAAAGAGT 57.648 33.333 31.93 30.45 37.32 3.24
3175 3342 9.915629 ACATTTCTGACTCAAAACTACTAGTAG 57.084 33.333 25.30 25.30 39.04 2.57
3182 3660 8.845227 TGCATTAACATTTCTGACTCAAAACTA 58.155 29.630 0.00 0.00 0.00 2.24
3183 3661 7.715657 TGCATTAACATTTCTGACTCAAAACT 58.284 30.769 0.00 0.00 0.00 2.66
3184 3662 7.928908 TGCATTAACATTTCTGACTCAAAAC 57.071 32.000 0.00 0.00 0.00 2.43
3185 3663 7.437862 GGTTGCATTAACATTTCTGACTCAAAA 59.562 33.333 0.00 0.00 41.18 2.44
3258 3736 7.095523 GGATGAACTGAAAAATCAACATTGTGG 60.096 37.037 0.00 0.00 0.00 4.17
3259 3737 7.358600 CGGATGAACTGAAAAATCAACATTGTG 60.359 37.037 0.00 0.00 0.00 3.33
3260 3738 6.642131 CGGATGAACTGAAAAATCAACATTGT 59.358 34.615 0.00 0.00 0.00 2.71
3261 3739 6.089820 CCGGATGAACTGAAAAATCAACATTG 59.910 38.462 0.00 0.00 0.00 2.82
3262 3740 6.015519 TCCGGATGAACTGAAAAATCAACATT 60.016 34.615 0.00 0.00 0.00 2.71
3263 3741 5.476599 TCCGGATGAACTGAAAAATCAACAT 59.523 36.000 0.00 0.00 0.00 2.71
3264 3742 4.824537 TCCGGATGAACTGAAAAATCAACA 59.175 37.500 0.00 0.00 0.00 3.33
3265 3743 5.371115 TCCGGATGAACTGAAAAATCAAC 57.629 39.130 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.