Multiple sequence alignment - TraesCS6D01G334800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G334800 chr6D 100.000 3143 0 0 1 3143 436637336 436640478 0.000000e+00 5805.0
1 TraesCS6D01G334800 chr6D 89.870 1461 92 21 737 2171 436420918 436422348 0.000000e+00 1827.0
2 TraesCS6D01G334800 chr6D 96.186 603 20 2 2541 3143 278628797 278629396 0.000000e+00 983.0
3 TraesCS6D01G334800 chr6D 88.481 599 48 14 710 1298 436474467 436473880 0.000000e+00 704.0
4 TraesCS6D01G334800 chr6D 90.278 288 25 3 273 560 418462347 418462631 1.060000e-99 374.0
5 TraesCS6D01G334800 chr6D 90.714 280 23 3 277 556 37522339 37522063 1.380000e-98 370.0
6 TraesCS6D01G334800 chr6D 81.410 312 32 12 2087 2385 436473881 436473583 6.780000e-57 231.0
7 TraesCS6D01G334800 chr6A 90.548 1788 121 25 660 2427 584757881 584759640 0.000000e+00 2322.0
8 TraesCS6D01G334800 chr6A 91.408 1641 111 19 738 2365 584695521 584693898 0.000000e+00 2222.0
9 TraesCS6D01G334800 chr6A 90.778 1453 98 13 737 2171 584593392 584594826 0.000000e+00 1908.0
10 TraesCS6D01G334800 chr6A 89.943 1054 70 19 1391 2427 584717354 584716320 0.000000e+00 1327.0
11 TraesCS6D01G334800 chr6A 87.813 919 69 14 1644 2540 584760786 584761683 0.000000e+00 1037.0
12 TraesCS6D01G334800 chr6A 91.559 699 43 7 555 1244 584718056 584717365 0.000000e+00 950.0
13 TraesCS6D01G334800 chr6A 90.870 230 19 2 1 230 464426372 464426599 1.090000e-79 307.0
14 TraesCS6D01G334800 chr6A 90.749 227 20 1 1 227 596204225 596204450 5.090000e-78 302.0
15 TraesCS6D01G334800 chr6A 90.308 227 20 2 1 227 426137148 426137372 2.370000e-76 296.0
16 TraesCS6D01G334800 chr6A 78.198 344 28 29 2101 2427 584708808 584708495 3.220000e-40 176.0
17 TraesCS6D01G334800 chr6B 91.529 1511 100 14 660 2167 659808667 659810152 0.000000e+00 2056.0
18 TraesCS6D01G334800 chr6B 88.820 644 55 9 1639 2268 659653863 659653223 0.000000e+00 774.0
19 TraesCS6D01G334800 chr6B 90.558 233 20 2 1 232 639145597 639145366 1.090000e-79 307.0
20 TraesCS6D01G334800 chr6B 93.269 104 7 0 2437 2540 659810084 659810187 1.510000e-33 154.0
21 TraesCS6D01G334800 chr6B 85.000 80 5 4 2362 2436 659653160 659653083 1.210000e-09 75.0
22 TraesCS6D01G334800 chr3B 91.299 1517 95 24 660 2162 663573418 663574911 0.000000e+00 2036.0
23 TraesCS6D01G334800 chr3D 91.299 1517 89 19 660 2162 502158083 502159570 0.000000e+00 2030.0
24 TraesCS6D01G334800 chr3D 95.854 603 22 2 2541 3143 395522912 395522313 0.000000e+00 972.0
25 TraesCS6D01G334800 chr3D 90.580 276 26 0 280 555 598483778 598484053 1.780000e-97 366.0
26 TraesCS6D01G334800 chr3D 96.000 225 8 1 1 225 426487145 426486922 6.410000e-97 364.0
27 TraesCS6D01G334800 chr7D 99.668 603 1 1 2541 3143 394235025 394234424 0.000000e+00 1101.0
28 TraesCS6D01G334800 chr7D 95.710 606 24 1 2538 3143 604990677 604991280 0.000000e+00 974.0
29 TraesCS6D01G334800 chr7D 90.909 275 23 2 281 555 208558116 208557844 4.950000e-98 368.0
30 TraesCS6D01G334800 chr4D 99.668 603 1 1 2541 3143 386435352 386434751 0.000000e+00 1101.0
31 TraesCS6D01G334800 chr4D 98.507 603 9 0 2541 3143 51301639 51301037 0.000000e+00 1064.0
32 TraesCS6D01G334800 chr2D 98.010 603 9 3 2541 3143 638455752 638455153 0.000000e+00 1044.0
33 TraesCS6D01G334800 chr1D 97.678 603 12 2 2541 3143 61443331 61443931 0.000000e+00 1035.0
34 TraesCS6D01G334800 chr1D 90.942 276 21 3 281 554 399217749 399217476 4.950000e-98 368.0
35 TraesCS6D01G334800 chr1D 91.489 47 4 0 2439 2485 414876558 414876604 7.280000e-07 65.8
36 TraesCS6D01G334800 chr7A 96.186 603 20 2 2541 3143 722766238 722766837 0.000000e+00 983.0
37 TraesCS6D01G334800 chr1B 91.697 277 20 3 280 555 333786795 333786521 6.360000e-102 381.0
38 TraesCS6D01G334800 chr5A 91.039 279 21 4 278 555 696885828 696886103 1.060000e-99 374.0
39 TraesCS6D01G334800 chr1A 90.975 277 24 1 280 556 323632515 323632240 3.830000e-99 372.0
40 TraesCS6D01G334800 chr4A 90.614 277 25 1 280 556 185383521 185383796 1.780000e-97 366.0
41 TraesCS6D01G334800 chr5B 93.833 227 13 1 1 227 353180633 353180408 1.080000e-89 340.0
42 TraesCS6D01G334800 chr5B 91.228 228 19 1 1 228 686848638 686848412 3.040000e-80 309.0
43 TraesCS6D01G334800 chr7B 91.189 227 19 1 3 229 184905886 184906111 1.090000e-79 307.0
44 TraesCS6D01G334800 chrUn 90.000 230 20 3 1 229 40938757 40938984 8.520000e-76 294.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G334800 chr6D 436637336 436640478 3142 False 5805.0 5805 100.0000 1 3143 1 chr6D.!!$F4 3142
1 TraesCS6D01G334800 chr6D 436420918 436422348 1430 False 1827.0 1827 89.8700 737 2171 1 chr6D.!!$F3 1434
2 TraesCS6D01G334800 chr6D 278628797 278629396 599 False 983.0 983 96.1860 2541 3143 1 chr6D.!!$F1 602
3 TraesCS6D01G334800 chr6D 436473583 436474467 884 True 467.5 704 84.9455 710 2385 2 chr6D.!!$R2 1675
4 TraesCS6D01G334800 chr6A 584693898 584695521 1623 True 2222.0 2222 91.4080 738 2365 1 chr6A.!!$R1 1627
5 TraesCS6D01G334800 chr6A 584593392 584594826 1434 False 1908.0 1908 90.7780 737 2171 1 chr6A.!!$F3 1434
6 TraesCS6D01G334800 chr6A 584757881 584761683 3802 False 1679.5 2322 89.1805 660 2540 2 chr6A.!!$F5 1880
7 TraesCS6D01G334800 chr6A 584716320 584718056 1736 True 1138.5 1327 90.7510 555 2427 2 chr6A.!!$R3 1872
8 TraesCS6D01G334800 chr6B 659808667 659810187 1520 False 1105.0 2056 92.3990 660 2540 2 chr6B.!!$F1 1880
9 TraesCS6D01G334800 chr6B 659653083 659653863 780 True 424.5 774 86.9100 1639 2436 2 chr6B.!!$R2 797
10 TraesCS6D01G334800 chr3B 663573418 663574911 1493 False 2036.0 2036 91.2990 660 2162 1 chr3B.!!$F1 1502
11 TraesCS6D01G334800 chr3D 502158083 502159570 1487 False 2030.0 2030 91.2990 660 2162 1 chr3D.!!$F1 1502
12 TraesCS6D01G334800 chr3D 395522313 395522912 599 True 972.0 972 95.8540 2541 3143 1 chr3D.!!$R1 602
13 TraesCS6D01G334800 chr7D 394234424 394235025 601 True 1101.0 1101 99.6680 2541 3143 1 chr7D.!!$R2 602
14 TraesCS6D01G334800 chr7D 604990677 604991280 603 False 974.0 974 95.7100 2538 3143 1 chr7D.!!$F1 605
15 TraesCS6D01G334800 chr4D 386434751 386435352 601 True 1101.0 1101 99.6680 2541 3143 1 chr4D.!!$R2 602
16 TraesCS6D01G334800 chr4D 51301037 51301639 602 True 1064.0 1064 98.5070 2541 3143 1 chr4D.!!$R1 602
17 TraesCS6D01G334800 chr2D 638455153 638455752 599 True 1044.0 1044 98.0100 2541 3143 1 chr2D.!!$R1 602
18 TraesCS6D01G334800 chr1D 61443331 61443931 600 False 1035.0 1035 97.6780 2541 3143 1 chr1D.!!$F1 602
19 TraesCS6D01G334800 chr7A 722766238 722766837 599 False 983.0 983 96.1860 2541 3143 1 chr7A.!!$F1 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 281 0.033781 CGGTGTGAACGGGGACTTTA 59.966 55.0 0.0 0.0 0.0 1.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2219 2301 0.532573 ATTGGAGCGAGACACACGAT 59.467 50.0 0.0 0.0 0.0 3.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.506886 CTTCATTAGGCGTAGTCCTAGG 57.493 50.000 0.82 0.82 37.53 3.02
22 23 3.589951 TCATTAGGCGTAGTCCTAGGT 57.410 47.619 9.08 0.00 37.53 3.08
23 24 4.712051 TCATTAGGCGTAGTCCTAGGTA 57.288 45.455 9.08 0.00 37.53 3.08
24 25 4.649692 TCATTAGGCGTAGTCCTAGGTAG 58.350 47.826 9.08 0.00 37.53 3.18
25 26 4.349048 TCATTAGGCGTAGTCCTAGGTAGA 59.651 45.833 9.08 0.00 37.53 2.59
26 27 2.934886 AGGCGTAGTCCTAGGTAGAG 57.065 55.000 9.08 0.00 32.59 2.43
27 28 2.126057 AGGCGTAGTCCTAGGTAGAGT 58.874 52.381 9.08 0.00 32.59 3.24
28 29 2.104622 AGGCGTAGTCCTAGGTAGAGTC 59.895 54.545 9.08 0.00 32.59 3.36
29 30 2.134346 GCGTAGTCCTAGGTAGAGTCG 58.866 57.143 9.08 8.72 0.00 4.18
30 31 2.753296 CGTAGTCCTAGGTAGAGTCGG 58.247 57.143 9.08 0.00 0.00 4.79
31 32 2.547642 CGTAGTCCTAGGTAGAGTCGGG 60.548 59.091 9.08 0.00 0.00 5.14
32 33 1.594129 AGTCCTAGGTAGAGTCGGGT 58.406 55.000 9.08 0.00 0.00 5.28
33 34 1.490069 AGTCCTAGGTAGAGTCGGGTC 59.510 57.143 9.08 0.00 0.00 4.46
34 35 0.467384 TCCTAGGTAGAGTCGGGTCG 59.533 60.000 9.08 0.00 0.00 4.79
35 36 0.534652 CCTAGGTAGAGTCGGGTCGG 60.535 65.000 0.00 0.00 0.00 4.79
36 37 0.467384 CTAGGTAGAGTCGGGTCGGA 59.533 60.000 0.00 0.00 0.00 4.55
37 38 0.911769 TAGGTAGAGTCGGGTCGGAA 59.088 55.000 0.00 0.00 0.00 4.30
38 39 0.394080 AGGTAGAGTCGGGTCGGAAG 60.394 60.000 0.00 0.00 0.00 3.46
39 40 1.382692 GGTAGAGTCGGGTCGGAAGG 61.383 65.000 0.00 0.00 0.00 3.46
40 41 1.077212 TAGAGTCGGGTCGGAAGGG 60.077 63.158 0.00 0.00 0.00 3.95
41 42 1.565390 TAGAGTCGGGTCGGAAGGGA 61.565 60.000 0.00 0.00 0.00 4.20
42 43 2.362632 AGTCGGGTCGGAAGGGAG 60.363 66.667 0.00 0.00 0.00 4.30
43 44 2.362120 GTCGGGTCGGAAGGGAGA 60.362 66.667 0.00 0.00 0.00 3.71
44 45 1.980772 GTCGGGTCGGAAGGGAGAA 60.981 63.158 0.00 0.00 0.00 2.87
45 46 1.001248 TCGGGTCGGAAGGGAGAAT 59.999 57.895 0.00 0.00 0.00 2.40
46 47 1.144057 CGGGTCGGAAGGGAGAATG 59.856 63.158 0.00 0.00 0.00 2.67
47 48 1.614241 CGGGTCGGAAGGGAGAATGT 61.614 60.000 0.00 0.00 0.00 2.71
48 49 0.107654 GGGTCGGAAGGGAGAATGTG 60.108 60.000 0.00 0.00 0.00 3.21
49 50 0.107654 GGTCGGAAGGGAGAATGTGG 60.108 60.000 0.00 0.00 0.00 4.17
50 51 0.107654 GTCGGAAGGGAGAATGTGGG 60.108 60.000 0.00 0.00 0.00 4.61
51 52 1.452108 CGGAAGGGAGAATGTGGGC 60.452 63.158 0.00 0.00 0.00 5.36
52 53 1.915078 CGGAAGGGAGAATGTGGGCT 61.915 60.000 0.00 0.00 0.00 5.19
53 54 1.213296 GGAAGGGAGAATGTGGGCTA 58.787 55.000 0.00 0.00 0.00 3.93
54 55 1.777272 GGAAGGGAGAATGTGGGCTAT 59.223 52.381 0.00 0.00 0.00 2.97
55 56 2.175715 GGAAGGGAGAATGTGGGCTATT 59.824 50.000 0.00 0.00 0.00 1.73
56 57 3.217626 GAAGGGAGAATGTGGGCTATTG 58.782 50.000 0.00 0.00 0.00 1.90
57 58 1.133668 AGGGAGAATGTGGGCTATTGC 60.134 52.381 0.00 0.00 38.76 3.56
58 59 1.133668 GGGAGAATGTGGGCTATTGCT 60.134 52.381 0.00 0.00 39.59 3.91
59 60 1.952296 GGAGAATGTGGGCTATTGCTG 59.048 52.381 0.00 0.00 39.59 4.41
60 61 1.952296 GAGAATGTGGGCTATTGCTGG 59.048 52.381 0.00 0.00 39.59 4.85
61 62 0.386838 GAATGTGGGCTATTGCTGGC 59.613 55.000 0.00 0.00 39.59 4.85
62 63 0.324552 AATGTGGGCTATTGCTGGCA 60.325 50.000 0.00 0.00 39.59 4.92
63 64 0.324552 ATGTGGGCTATTGCTGGCAA 60.325 50.000 10.48 10.48 40.47 4.52
64 65 0.966875 TGTGGGCTATTGCTGGCAAG 60.967 55.000 13.41 2.40 39.47 4.01
65 66 0.967380 GTGGGCTATTGCTGGCAAGT 60.967 55.000 13.41 5.18 39.47 3.16
66 67 0.251742 TGGGCTATTGCTGGCAAGTT 60.252 50.000 13.41 0.92 39.47 2.66
67 68 0.897621 GGGCTATTGCTGGCAAGTTT 59.102 50.000 13.41 0.24 39.47 2.66
68 69 2.099405 GGGCTATTGCTGGCAAGTTTA 58.901 47.619 13.41 1.37 39.47 2.01
69 70 2.495669 GGGCTATTGCTGGCAAGTTTAA 59.504 45.455 13.41 0.00 39.47 1.52
70 71 3.056179 GGGCTATTGCTGGCAAGTTTAAA 60.056 43.478 13.41 0.00 39.47 1.52
71 72 4.562552 GGGCTATTGCTGGCAAGTTTAAAA 60.563 41.667 13.41 0.00 39.47 1.52
72 73 4.627035 GGCTATTGCTGGCAAGTTTAAAAG 59.373 41.667 13.41 4.13 39.47 2.27
73 74 4.627035 GCTATTGCTGGCAAGTTTAAAAGG 59.373 41.667 13.41 0.00 39.47 3.11
74 75 4.953940 ATTGCTGGCAAGTTTAAAAGGA 57.046 36.364 13.41 0.00 39.47 3.36
75 76 4.320608 TTGCTGGCAAGTTTAAAAGGAG 57.679 40.909 3.72 0.00 0.00 3.69
76 77 2.035832 TGCTGGCAAGTTTAAAAGGAGC 59.964 45.455 0.00 0.00 0.00 4.70
77 78 2.035832 GCTGGCAAGTTTAAAAGGAGCA 59.964 45.455 0.00 0.00 0.00 4.26
78 79 3.306294 GCTGGCAAGTTTAAAAGGAGCAT 60.306 43.478 0.00 0.00 0.00 3.79
79 80 4.240096 CTGGCAAGTTTAAAAGGAGCATG 58.760 43.478 0.00 0.00 0.00 4.06
80 81 3.006752 TGGCAAGTTTAAAAGGAGCATGG 59.993 43.478 0.00 0.00 0.00 3.66
81 82 3.258123 GGCAAGTTTAAAAGGAGCATGGA 59.742 43.478 0.00 0.00 0.00 3.41
82 83 4.237724 GCAAGTTTAAAAGGAGCATGGAC 58.762 43.478 0.00 0.00 0.00 4.02
83 84 4.809673 CAAGTTTAAAAGGAGCATGGACC 58.190 43.478 0.00 0.00 0.00 4.46
84 85 3.431415 AGTTTAAAAGGAGCATGGACCC 58.569 45.455 0.00 0.00 0.00 4.46
85 86 2.496070 GTTTAAAAGGAGCATGGACCCC 59.504 50.000 0.00 0.00 0.00 4.95
86 87 1.681229 TAAAAGGAGCATGGACCCCT 58.319 50.000 0.00 0.00 0.00 4.79
87 88 0.786435 AAAAGGAGCATGGACCCCTT 59.214 50.000 0.00 0.00 40.46 3.95
88 89 0.332972 AAAGGAGCATGGACCCCTTC 59.667 55.000 0.00 0.00 37.99 3.46
89 90 0.551131 AAGGAGCATGGACCCCTTCT 60.551 55.000 0.00 0.00 34.11 2.85
90 91 0.551131 AGGAGCATGGACCCCTTCTT 60.551 55.000 0.00 0.00 0.00 2.52
91 92 0.106967 GGAGCATGGACCCCTTCTTC 60.107 60.000 0.00 0.00 0.00 2.87
92 93 0.106967 GAGCATGGACCCCTTCTTCC 60.107 60.000 0.00 0.00 0.00 3.46
93 94 0.551131 AGCATGGACCCCTTCTTCCT 60.551 55.000 0.00 0.00 32.55 3.36
94 95 0.332972 GCATGGACCCCTTCTTCCTT 59.667 55.000 0.00 0.00 32.55 3.36
95 96 1.683319 GCATGGACCCCTTCTTCCTTC 60.683 57.143 0.00 0.00 32.55 3.46
96 97 0.912486 ATGGACCCCTTCTTCCTTCG 59.088 55.000 0.00 0.00 32.55 3.79
97 98 1.198759 TGGACCCCTTCTTCCTTCGG 61.199 60.000 0.00 0.00 32.55 4.30
98 99 1.078356 GACCCCTTCTTCCTTCGGC 60.078 63.158 0.00 0.00 0.00 5.54
99 100 1.539124 ACCCCTTCTTCCTTCGGCT 60.539 57.895 0.00 0.00 0.00 5.52
100 101 1.134438 ACCCCTTCTTCCTTCGGCTT 61.134 55.000 0.00 0.00 0.00 4.35
101 102 0.678048 CCCCTTCTTCCTTCGGCTTG 60.678 60.000 0.00 0.00 0.00 4.01
102 103 0.324943 CCCTTCTTCCTTCGGCTTGA 59.675 55.000 0.00 0.00 0.00 3.02
103 104 1.271379 CCCTTCTTCCTTCGGCTTGAA 60.271 52.381 0.00 0.00 34.74 2.69
104 105 1.807142 CCTTCTTCCTTCGGCTTGAAC 59.193 52.381 0.00 0.00 31.87 3.18
105 106 1.461127 CTTCTTCCTTCGGCTTGAACG 59.539 52.381 0.00 0.00 31.87 3.95
106 107 0.320421 TCTTCCTTCGGCTTGAACGG 60.320 55.000 0.00 0.00 31.87 4.44
107 108 0.602905 CTTCCTTCGGCTTGAACGGT 60.603 55.000 0.00 0.00 31.87 4.83
108 109 0.882927 TTCCTTCGGCTTGAACGGTG 60.883 55.000 0.00 0.00 31.87 4.94
109 110 2.325082 CCTTCGGCTTGAACGGTGG 61.325 63.158 0.00 0.00 31.87 4.61
110 111 2.281208 TTCGGCTTGAACGGTGGG 60.281 61.111 0.00 0.00 0.00 4.61
113 114 4.966787 GGCTTGAACGGTGGGCCA 62.967 66.667 0.00 0.00 42.08 5.36
114 115 3.365265 GCTTGAACGGTGGGCCAG 61.365 66.667 6.40 0.00 34.09 4.85
115 116 2.113139 CTTGAACGGTGGGCCAGT 59.887 61.111 6.40 0.00 34.09 4.00
116 117 1.373435 CTTGAACGGTGGGCCAGTA 59.627 57.895 6.40 0.00 34.09 2.74
117 118 0.673644 CTTGAACGGTGGGCCAGTAG 60.674 60.000 6.40 3.48 34.09 2.57
118 119 1.412453 TTGAACGGTGGGCCAGTAGT 61.412 55.000 6.40 4.25 34.09 2.73
119 120 1.375523 GAACGGTGGGCCAGTAGTG 60.376 63.158 6.40 0.00 34.09 2.74
120 121 1.823169 GAACGGTGGGCCAGTAGTGA 61.823 60.000 6.40 0.00 34.09 3.41
121 122 1.827399 AACGGTGGGCCAGTAGTGAG 61.827 60.000 6.40 0.00 34.09 3.51
122 123 2.990479 GGTGGGCCAGTAGTGAGG 59.010 66.667 6.40 0.00 34.09 3.86
123 124 1.612442 GGTGGGCCAGTAGTGAGGA 60.612 63.158 6.40 0.00 34.09 3.71
124 125 0.983378 GGTGGGCCAGTAGTGAGGAT 60.983 60.000 6.40 0.00 34.09 3.24
125 126 0.912486 GTGGGCCAGTAGTGAGGATT 59.088 55.000 6.40 0.00 0.00 3.01
126 127 2.116238 GTGGGCCAGTAGTGAGGATTA 58.884 52.381 6.40 0.00 0.00 1.75
127 128 2.706190 GTGGGCCAGTAGTGAGGATTAT 59.294 50.000 6.40 0.00 0.00 1.28
128 129 2.705658 TGGGCCAGTAGTGAGGATTATG 59.294 50.000 0.00 0.00 0.00 1.90
129 130 2.972713 GGGCCAGTAGTGAGGATTATGA 59.027 50.000 4.39 0.00 0.00 2.15
130 131 3.007398 GGGCCAGTAGTGAGGATTATGAG 59.993 52.174 4.39 0.00 0.00 2.90
131 132 3.556004 GGCCAGTAGTGAGGATTATGAGC 60.556 52.174 0.00 0.00 0.00 4.26
132 133 3.858877 GCCAGTAGTGAGGATTATGAGCG 60.859 52.174 0.00 0.00 0.00 5.03
133 134 3.319405 CCAGTAGTGAGGATTATGAGCGT 59.681 47.826 0.00 0.00 0.00 5.07
134 135 4.202161 CCAGTAGTGAGGATTATGAGCGTT 60.202 45.833 0.00 0.00 0.00 4.84
135 136 4.742167 CAGTAGTGAGGATTATGAGCGTTG 59.258 45.833 0.00 0.00 0.00 4.10
136 137 3.895232 AGTGAGGATTATGAGCGTTGT 57.105 42.857 0.00 0.00 0.00 3.32
137 138 5.593095 AGTAGTGAGGATTATGAGCGTTGTA 59.407 40.000 0.00 0.00 0.00 2.41
138 139 5.339008 AGTGAGGATTATGAGCGTTGTAA 57.661 39.130 0.00 0.00 0.00 2.41
139 140 5.918608 AGTGAGGATTATGAGCGTTGTAAT 58.081 37.500 0.00 0.00 0.00 1.89
140 141 5.755375 AGTGAGGATTATGAGCGTTGTAATG 59.245 40.000 0.00 0.00 0.00 1.90
141 142 5.523916 GTGAGGATTATGAGCGTTGTAATGT 59.476 40.000 0.00 0.00 0.00 2.71
142 143 5.523552 TGAGGATTATGAGCGTTGTAATGTG 59.476 40.000 0.00 0.00 0.00 3.21
143 144 5.670485 AGGATTATGAGCGTTGTAATGTGA 58.330 37.500 0.00 0.00 0.00 3.58
144 145 5.523916 AGGATTATGAGCGTTGTAATGTGAC 59.476 40.000 0.00 0.00 0.00 3.67
145 146 5.277345 GGATTATGAGCGTTGTAATGTGACC 60.277 44.000 0.00 0.00 0.00 4.02
146 147 1.803334 TGAGCGTTGTAATGTGACCC 58.197 50.000 0.00 0.00 0.00 4.46
147 148 1.346395 TGAGCGTTGTAATGTGACCCT 59.654 47.619 0.00 0.00 0.00 4.34
148 149 2.224426 TGAGCGTTGTAATGTGACCCTT 60.224 45.455 0.00 0.00 0.00 3.95
149 150 2.151202 AGCGTTGTAATGTGACCCTTG 58.849 47.619 0.00 0.00 0.00 3.61
150 151 1.877443 GCGTTGTAATGTGACCCTTGT 59.123 47.619 0.00 0.00 0.00 3.16
151 152 3.068560 GCGTTGTAATGTGACCCTTGTA 58.931 45.455 0.00 0.00 0.00 2.41
152 153 3.499157 GCGTTGTAATGTGACCCTTGTAA 59.501 43.478 0.00 0.00 0.00 2.41
153 154 4.023878 GCGTTGTAATGTGACCCTTGTAAA 60.024 41.667 0.00 0.00 0.00 2.01
154 155 5.335348 GCGTTGTAATGTGACCCTTGTAAAT 60.335 40.000 0.00 0.00 0.00 1.40
155 156 6.128227 GCGTTGTAATGTGACCCTTGTAAATA 60.128 38.462 0.00 0.00 0.00 1.40
156 157 7.414762 GCGTTGTAATGTGACCCTTGTAAATAT 60.415 37.037 0.00 0.00 0.00 1.28
157 158 7.908082 CGTTGTAATGTGACCCTTGTAAATATG 59.092 37.037 0.00 0.00 0.00 1.78
158 159 7.873719 TGTAATGTGACCCTTGTAAATATGG 57.126 36.000 0.00 0.00 0.00 2.74
159 160 7.406916 TGTAATGTGACCCTTGTAAATATGGT 58.593 34.615 0.00 0.00 0.00 3.55
160 161 6.773976 AATGTGACCCTTGTAAATATGGTG 57.226 37.500 0.00 0.00 0.00 4.17
161 162 4.594970 TGTGACCCTTGTAAATATGGTGG 58.405 43.478 0.00 0.00 0.00 4.61
162 163 4.289934 TGTGACCCTTGTAAATATGGTGGA 59.710 41.667 0.00 0.00 0.00 4.02
163 164 4.881850 GTGACCCTTGTAAATATGGTGGAG 59.118 45.833 0.00 0.00 0.00 3.86
164 165 4.080015 TGACCCTTGTAAATATGGTGGAGG 60.080 45.833 0.00 0.00 0.00 4.30
165 166 3.222603 CCCTTGTAAATATGGTGGAGGC 58.777 50.000 0.00 0.00 0.00 4.70
166 167 3.372566 CCCTTGTAAATATGGTGGAGGCA 60.373 47.826 0.00 0.00 0.00 4.75
167 168 4.473444 CCTTGTAAATATGGTGGAGGCAT 58.527 43.478 0.00 0.00 0.00 4.40
168 169 4.895297 CCTTGTAAATATGGTGGAGGCATT 59.105 41.667 0.00 0.00 0.00 3.56
169 170 5.010012 CCTTGTAAATATGGTGGAGGCATTC 59.990 44.000 0.00 0.00 0.00 2.67
170 171 5.387113 TGTAAATATGGTGGAGGCATTCT 57.613 39.130 0.00 0.00 0.00 2.40
171 172 5.765510 TGTAAATATGGTGGAGGCATTCTT 58.234 37.500 0.00 0.00 0.00 2.52
172 173 6.194235 TGTAAATATGGTGGAGGCATTCTTT 58.806 36.000 0.00 0.00 0.00 2.52
173 174 5.603170 AAATATGGTGGAGGCATTCTTTG 57.397 39.130 0.00 0.00 0.00 2.77
188 189 7.895975 GCATTCTTTGCCTTTCTTCTTTAAT 57.104 32.000 0.00 0.00 46.15 1.40
189 190 8.986477 GCATTCTTTGCCTTTCTTCTTTAATA 57.014 30.769 0.00 0.00 46.15 0.98
190 191 9.591792 GCATTCTTTGCCTTTCTTCTTTAATAT 57.408 29.630 0.00 0.00 46.15 1.28
244 245 4.661246 AAAACGACGGCGGCGGTA 62.661 61.111 39.66 0.00 43.17 4.02
256 257 4.162690 GCGGTAGTGGGAGGGCTG 62.163 72.222 0.00 0.00 0.00 4.85
257 258 2.363795 CGGTAGTGGGAGGGCTGA 60.364 66.667 0.00 0.00 0.00 4.26
258 259 2.427245 CGGTAGTGGGAGGGCTGAG 61.427 68.421 0.00 0.00 0.00 3.35
259 260 2.066999 GGTAGTGGGAGGGCTGAGG 61.067 68.421 0.00 0.00 0.00 3.86
260 261 2.066999 GTAGTGGGAGGGCTGAGGG 61.067 68.421 0.00 0.00 0.00 4.30
269 270 4.329545 GGCTGAGGGCGGTGTGAA 62.330 66.667 0.00 0.00 42.94 3.18
270 271 3.050275 GCTGAGGGCGGTGTGAAC 61.050 66.667 0.00 0.00 0.00 3.18
271 272 2.738521 CTGAGGGCGGTGTGAACG 60.739 66.667 0.00 0.00 0.00 3.95
272 273 4.308458 TGAGGGCGGTGTGAACGG 62.308 66.667 0.00 0.00 0.00 4.44
277 278 4.309950 GCGGTGTGAACGGGGACT 62.310 66.667 0.00 0.00 0.00 3.85
278 279 2.424302 CGGTGTGAACGGGGACTT 59.576 61.111 0.00 0.00 0.00 3.01
279 280 1.227734 CGGTGTGAACGGGGACTTT 60.228 57.895 0.00 0.00 0.00 2.66
280 281 0.033781 CGGTGTGAACGGGGACTTTA 59.966 55.000 0.00 0.00 0.00 1.85
281 282 1.540797 CGGTGTGAACGGGGACTTTAA 60.541 52.381 0.00 0.00 0.00 1.52
282 283 2.574450 GGTGTGAACGGGGACTTTAAA 58.426 47.619 0.00 0.00 0.00 1.52
283 284 2.950975 GGTGTGAACGGGGACTTTAAAA 59.049 45.455 0.00 0.00 0.00 1.52
284 285 3.570975 GGTGTGAACGGGGACTTTAAAAT 59.429 43.478 0.00 0.00 0.00 1.82
285 286 4.038282 GGTGTGAACGGGGACTTTAAAATT 59.962 41.667 0.00 0.00 0.00 1.82
286 287 5.241285 GGTGTGAACGGGGACTTTAAAATTA 59.759 40.000 0.00 0.00 0.00 1.40
287 288 6.376177 GTGTGAACGGGGACTTTAAAATTAG 58.624 40.000 0.00 0.00 0.00 1.73
288 289 5.474189 TGTGAACGGGGACTTTAAAATTAGG 59.526 40.000 0.00 0.00 0.00 2.69
289 290 5.011586 TGAACGGGGACTTTAAAATTAGGG 58.988 41.667 0.00 0.00 0.00 3.53
290 291 3.972133 ACGGGGACTTTAAAATTAGGGG 58.028 45.455 0.00 0.00 0.00 4.79
291 292 3.592877 ACGGGGACTTTAAAATTAGGGGA 59.407 43.478 0.00 0.00 0.00 4.81
292 293 4.204799 CGGGGACTTTAAAATTAGGGGAG 58.795 47.826 0.00 0.00 0.00 4.30
293 294 4.080186 CGGGGACTTTAAAATTAGGGGAGA 60.080 45.833 0.00 0.00 0.00 3.71
294 295 5.574120 CGGGGACTTTAAAATTAGGGGAGAA 60.574 44.000 0.00 0.00 0.00 2.87
295 296 6.441222 GGGGACTTTAAAATTAGGGGAGAAT 58.559 40.000 0.00 0.00 0.00 2.40
296 297 6.901300 GGGGACTTTAAAATTAGGGGAGAATT 59.099 38.462 0.00 0.00 0.00 2.17
297 298 7.402071 GGGGACTTTAAAATTAGGGGAGAATTT 59.598 37.037 0.00 0.00 37.96 1.82
298 299 8.475639 GGGACTTTAAAATTAGGGGAGAATTTC 58.524 37.037 0.00 0.00 35.86 2.17
299 300 9.031537 GGACTTTAAAATTAGGGGAGAATTTCA 57.968 33.333 0.00 0.00 35.86 2.69
300 301 9.856488 GACTTTAAAATTAGGGGAGAATTTCAC 57.144 33.333 0.00 0.00 35.86 3.18
301 302 9.601810 ACTTTAAAATTAGGGGAGAATTTCACT 57.398 29.630 0.00 0.00 35.86 3.41
304 305 7.482169 AAAATTAGGGGAGAATTTCACTTCC 57.518 36.000 0.00 0.00 35.86 3.46
306 307 2.145397 GGGGAGAATTTCACTTCCCC 57.855 55.000 20.02 20.02 45.11 4.81
307 308 1.682087 GGGGAGAATTTCACTTCCCCG 60.682 57.143 20.02 0.00 45.11 5.73
308 309 1.682087 GGGAGAATTTCACTTCCCCGG 60.682 57.143 9.95 0.00 30.77 5.73
309 310 1.095600 GAGAATTTCACTTCCCCGGC 58.904 55.000 0.00 0.00 0.00 6.13
310 311 0.323451 AGAATTTCACTTCCCCGGCC 60.323 55.000 0.00 0.00 0.00 6.13
311 312 0.323451 GAATTTCACTTCCCCGGCCT 60.323 55.000 0.00 0.00 0.00 5.19
312 313 0.323451 AATTTCACTTCCCCGGCCTC 60.323 55.000 0.00 0.00 0.00 4.70
313 314 1.208165 ATTTCACTTCCCCGGCCTCT 61.208 55.000 0.00 0.00 0.00 3.69
314 315 2.124507 TTTCACTTCCCCGGCCTCTG 62.125 60.000 0.00 0.00 0.00 3.35
315 316 4.785453 CACTTCCCCGGCCTCTGC 62.785 72.222 0.00 0.00 0.00 4.26
317 318 4.785453 CTTCCCCGGCCTCTGCAC 62.785 72.222 0.00 0.00 40.13 4.57
322 323 4.335647 CCGGCCTCTGCACCAACT 62.336 66.667 0.00 0.00 40.13 3.16
323 324 2.662596 CGGCCTCTGCACCAACTA 59.337 61.111 0.00 0.00 40.13 2.24
324 325 1.448540 CGGCCTCTGCACCAACTAG 60.449 63.158 0.00 0.00 40.13 2.57
325 326 1.078143 GGCCTCTGCACCAACTAGG 60.078 63.158 0.00 0.00 45.67 3.02
326 327 1.078143 GCCTCTGCACCAACTAGGG 60.078 63.158 0.00 0.00 43.89 3.53
327 328 1.553690 GCCTCTGCACCAACTAGGGA 61.554 60.000 0.00 0.00 43.89 4.20
328 329 1.207791 CCTCTGCACCAACTAGGGAT 58.792 55.000 0.00 0.00 43.89 3.85
329 330 1.134280 CCTCTGCACCAACTAGGGATG 60.134 57.143 0.00 0.00 43.89 3.51
330 331 0.253044 TCTGCACCAACTAGGGATGC 59.747 55.000 0.00 0.00 43.89 3.91
331 332 0.035152 CTGCACCAACTAGGGATGCA 60.035 55.000 5.68 5.68 43.70 3.96
332 333 0.625316 TGCACCAACTAGGGATGCAT 59.375 50.000 0.00 0.00 41.18 3.96
333 334 1.843206 TGCACCAACTAGGGATGCATA 59.157 47.619 0.00 0.00 41.18 3.14
334 335 2.222027 GCACCAACTAGGGATGCATAC 58.778 52.381 0.00 0.00 43.89 2.39
335 336 2.483876 CACCAACTAGGGATGCATACG 58.516 52.381 1.96 0.00 43.89 3.06
336 337 1.416401 ACCAACTAGGGATGCATACGG 59.584 52.381 1.96 0.00 43.89 4.02
337 338 1.512926 CAACTAGGGATGCATACGGC 58.487 55.000 1.96 0.00 45.13 5.68
338 339 0.396811 AACTAGGGATGCATACGGCC 59.603 55.000 1.96 0.00 43.89 6.13
339 340 0.762842 ACTAGGGATGCATACGGCCA 60.763 55.000 2.24 0.00 43.89 5.36
340 341 0.615331 CTAGGGATGCATACGGCCAT 59.385 55.000 2.24 0.00 43.89 4.40
341 342 1.003580 CTAGGGATGCATACGGCCATT 59.996 52.381 2.24 0.00 43.89 3.16
342 343 0.185901 AGGGATGCATACGGCCATTT 59.814 50.000 2.24 0.00 43.89 2.32
343 344 1.039856 GGGATGCATACGGCCATTTT 58.960 50.000 2.24 0.00 43.89 1.82
344 345 2.158534 AGGGATGCATACGGCCATTTTA 60.159 45.455 2.24 0.00 43.89 1.52
345 346 2.625790 GGGATGCATACGGCCATTTTAA 59.374 45.455 2.24 0.00 43.89 1.52
346 347 3.258123 GGGATGCATACGGCCATTTTAAT 59.742 43.478 2.24 0.00 43.89 1.40
347 348 4.461081 GGGATGCATACGGCCATTTTAATA 59.539 41.667 2.24 0.00 43.89 0.98
348 349 5.127031 GGGATGCATACGGCCATTTTAATAT 59.873 40.000 2.24 0.00 43.89 1.28
349 350 6.035843 GGATGCATACGGCCATTTTAATATG 58.964 40.000 2.24 0.00 43.89 1.78
350 351 6.127758 GGATGCATACGGCCATTTTAATATGA 60.128 38.462 2.24 0.00 43.89 2.15
351 352 6.252967 TGCATACGGCCATTTTAATATGAG 57.747 37.500 2.24 2.18 43.89 2.90
352 353 5.767665 TGCATACGGCCATTTTAATATGAGT 59.232 36.000 2.24 7.02 43.89 3.41
353 354 6.937465 TGCATACGGCCATTTTAATATGAGTA 59.063 34.615 2.24 8.60 43.89 2.59
354 355 7.609918 TGCATACGGCCATTTTAATATGAGTAT 59.390 33.333 2.24 10.07 43.89 2.12
355 356 8.122952 GCATACGGCCATTTTAATATGAGTATC 58.877 37.037 2.24 5.72 36.11 2.24
371 372 6.174720 TGAGTATCAGGATAAACATGGTCC 57.825 41.667 0.00 0.00 42.56 4.46
372 373 5.905331 TGAGTATCAGGATAAACATGGTCCT 59.095 40.000 0.00 1.47 42.56 3.85
373 374 6.042093 TGAGTATCAGGATAAACATGGTCCTC 59.958 42.308 0.00 0.00 42.56 3.71
374 375 5.905331 AGTATCAGGATAAACATGGTCCTCA 59.095 40.000 0.00 0.00 40.31 3.86
375 376 4.760530 TCAGGATAAACATGGTCCTCAG 57.239 45.455 0.00 0.00 40.31 3.35
376 377 4.361783 TCAGGATAAACATGGTCCTCAGA 58.638 43.478 0.00 0.00 40.31 3.27
377 378 4.782691 TCAGGATAAACATGGTCCTCAGAA 59.217 41.667 0.00 0.00 40.31 3.02
378 379 5.429762 TCAGGATAAACATGGTCCTCAGAAT 59.570 40.000 0.00 0.00 40.31 2.40
379 380 6.069440 TCAGGATAAACATGGTCCTCAGAATT 60.069 38.462 0.00 0.00 40.31 2.17
380 381 6.604795 CAGGATAAACATGGTCCTCAGAATTT 59.395 38.462 0.00 0.00 40.31 1.82
381 382 7.123247 CAGGATAAACATGGTCCTCAGAATTTT 59.877 37.037 0.00 0.00 40.31 1.82
382 383 7.340487 AGGATAAACATGGTCCTCAGAATTTTC 59.660 37.037 0.00 0.00 37.88 2.29
383 384 7.340487 GGATAAACATGGTCCTCAGAATTTTCT 59.660 37.037 0.00 0.00 38.25 2.52
384 385 9.396022 GATAAACATGGTCCTCAGAATTTTCTA 57.604 33.333 0.00 0.00 35.34 2.10
385 386 9.753674 ATAAACATGGTCCTCAGAATTTTCTAA 57.246 29.630 0.00 0.00 35.34 2.10
386 387 8.477419 AAACATGGTCCTCAGAATTTTCTAAA 57.523 30.769 0.00 0.00 35.34 1.85
387 388 8.655935 AACATGGTCCTCAGAATTTTCTAAAT 57.344 30.769 0.00 0.00 35.34 1.40
388 389 9.753674 AACATGGTCCTCAGAATTTTCTAAATA 57.246 29.630 0.00 0.00 35.34 1.40
389 390 9.753674 ACATGGTCCTCAGAATTTTCTAAATAA 57.246 29.630 0.00 0.00 35.34 1.40
391 392 9.981460 ATGGTCCTCAGAATTTTCTAAATAAGT 57.019 29.630 0.00 0.00 35.34 2.24
433 434 2.443958 TGGTTCCACCACACATCAAA 57.556 45.000 0.00 0.00 44.79 2.69
434 435 2.956132 TGGTTCCACCACACATCAAAT 58.044 42.857 0.00 0.00 44.79 2.32
435 436 3.303938 TGGTTCCACCACACATCAAATT 58.696 40.909 0.00 0.00 44.79 1.82
436 437 3.708631 TGGTTCCACCACACATCAAATTT 59.291 39.130 0.00 0.00 44.79 1.82
437 438 4.057432 GGTTCCACCACACATCAAATTTG 58.943 43.478 12.15 12.15 38.42 2.32
438 439 4.202202 GGTTCCACCACACATCAAATTTGA 60.202 41.667 22.52 22.52 38.84 2.69
439 440 5.511202 GGTTCCACCACACATCAAATTTGAT 60.511 40.000 24.83 24.83 42.45 2.57
440 441 5.389859 TCCACCACACATCAAATTTGATC 57.610 39.130 27.08 0.00 45.62 2.92
441 442 4.220382 TCCACCACACATCAAATTTGATCC 59.780 41.667 27.08 0.00 45.62 3.36
442 443 4.221262 CCACCACACATCAAATTTGATCCT 59.779 41.667 27.08 14.56 45.62 3.24
443 444 5.279607 CCACCACACATCAAATTTGATCCTT 60.280 40.000 27.08 13.89 45.62 3.36
444 445 6.071447 CCACCACACATCAAATTTGATCCTTA 60.071 38.462 27.08 4.18 45.62 2.69
445 446 7.377398 CACCACACATCAAATTTGATCCTTAA 58.623 34.615 27.08 3.45 45.62 1.85
446 447 8.036575 CACCACACATCAAATTTGATCCTTAAT 58.963 33.333 27.08 11.79 45.62 1.40
447 448 9.253832 ACCACACATCAAATTTGATCCTTAATA 57.746 29.630 27.08 2.01 45.62 0.98
479 480 5.886960 AAAAACTCTGTGCATCACCTATC 57.113 39.130 0.00 0.00 32.73 2.08
480 481 4.558226 AAACTCTGTGCATCACCTATCA 57.442 40.909 0.00 0.00 32.73 2.15
481 482 4.558226 AACTCTGTGCATCACCTATCAA 57.442 40.909 0.00 0.00 32.73 2.57
482 483 4.767578 ACTCTGTGCATCACCTATCAAT 57.232 40.909 0.00 0.00 32.73 2.57
483 484 5.108187 ACTCTGTGCATCACCTATCAATT 57.892 39.130 0.00 0.00 32.73 2.32
484 485 5.121811 ACTCTGTGCATCACCTATCAATTC 58.878 41.667 0.00 0.00 32.73 2.17
485 486 5.104610 ACTCTGTGCATCACCTATCAATTCT 60.105 40.000 0.00 0.00 32.73 2.40
486 487 6.098838 ACTCTGTGCATCACCTATCAATTCTA 59.901 38.462 0.00 0.00 32.73 2.10
487 488 6.888105 TCTGTGCATCACCTATCAATTCTAA 58.112 36.000 0.00 0.00 32.73 2.10
488 489 6.988580 TCTGTGCATCACCTATCAATTCTAAG 59.011 38.462 0.00 0.00 32.73 2.18
489 490 6.888105 TGTGCATCACCTATCAATTCTAAGA 58.112 36.000 0.00 0.00 32.73 2.10
490 491 7.337938 TGTGCATCACCTATCAATTCTAAGAA 58.662 34.615 0.00 0.00 32.73 2.52
491 492 7.994911 TGTGCATCACCTATCAATTCTAAGAAT 59.005 33.333 0.00 0.00 32.73 2.40
492 493 8.844244 GTGCATCACCTATCAATTCTAAGAATT 58.156 33.333 0.00 0.00 0.00 2.17
493 494 8.843262 TGCATCACCTATCAATTCTAAGAATTG 58.157 33.333 3.00 3.00 38.60 2.32
494 495 9.060347 GCATCACCTATCAATTCTAAGAATTGA 57.940 33.333 21.83 21.83 46.71 2.57
499 500 9.319143 ACCTATCAATTCTAAGAATTGAACTCG 57.681 33.333 22.69 16.26 46.06 4.18
500 501 8.768955 CCTATCAATTCTAAGAATTGAACTCGG 58.231 37.037 22.69 18.02 46.06 4.63
501 502 6.985188 TCAATTCTAAGAATTGAACTCGGG 57.015 37.500 19.38 0.00 41.92 5.14
502 503 6.472887 TCAATTCTAAGAATTGAACTCGGGT 58.527 36.000 19.38 0.00 41.92 5.28
503 504 6.594159 TCAATTCTAAGAATTGAACTCGGGTC 59.406 38.462 19.38 0.00 41.92 4.46
504 505 4.106029 TCTAAGAATTGAACTCGGGTCG 57.894 45.455 0.00 0.00 0.00 4.79
505 506 2.833631 AAGAATTGAACTCGGGTCGT 57.166 45.000 0.00 0.00 0.00 4.34
506 507 2.833631 AGAATTGAACTCGGGTCGTT 57.166 45.000 0.00 0.00 0.00 3.85
507 508 3.947910 AGAATTGAACTCGGGTCGTTA 57.052 42.857 0.00 0.00 0.00 3.18
508 509 3.846360 AGAATTGAACTCGGGTCGTTAG 58.154 45.455 0.00 0.00 0.00 2.34
509 510 3.508793 AGAATTGAACTCGGGTCGTTAGA 59.491 43.478 0.00 0.00 0.00 2.10
510 511 2.712057 TTGAACTCGGGTCGTTAGAC 57.288 50.000 0.00 0.00 46.34 2.59
511 512 1.901591 TGAACTCGGGTCGTTAGACT 58.098 50.000 0.00 0.00 46.29 3.24
512 513 1.538512 TGAACTCGGGTCGTTAGACTG 59.461 52.381 0.00 0.00 46.29 3.51
513 514 0.243095 AACTCGGGTCGTTAGACTGC 59.757 55.000 0.00 0.00 46.29 4.40
514 515 0.892358 ACTCGGGTCGTTAGACTGCA 60.892 55.000 0.00 0.00 46.29 4.41
515 516 0.456312 CTCGGGTCGTTAGACTGCAC 60.456 60.000 0.00 0.00 46.29 4.57
516 517 1.174078 TCGGGTCGTTAGACTGCACA 61.174 55.000 0.00 0.00 46.29 4.57
517 518 0.319211 CGGGTCGTTAGACTGCACAA 60.319 55.000 0.00 0.00 46.29 3.33
518 519 1.145803 GGGTCGTTAGACTGCACAAC 58.854 55.000 0.00 0.00 46.29 3.32
519 520 1.145803 GGTCGTTAGACTGCACAACC 58.854 55.000 0.00 0.00 46.29 3.77
520 521 1.539496 GGTCGTTAGACTGCACAACCA 60.539 52.381 0.00 0.00 46.29 3.67
521 522 1.525619 GTCGTTAGACTGCACAACCAC 59.474 52.381 0.00 0.00 43.80 4.16
522 523 1.137282 TCGTTAGACTGCACAACCACA 59.863 47.619 0.00 0.00 0.00 4.17
523 524 2.143122 CGTTAGACTGCACAACCACAT 58.857 47.619 0.00 0.00 0.00 3.21
524 525 2.096268 CGTTAGACTGCACAACCACATG 60.096 50.000 0.00 0.00 0.00 3.21
525 526 1.522668 TAGACTGCACAACCACATGC 58.477 50.000 0.00 0.00 42.40 4.06
526 527 1.174712 AGACTGCACAACCACATGCC 61.175 55.000 0.00 0.00 41.33 4.40
527 528 2.146073 GACTGCACAACCACATGCCC 62.146 60.000 0.00 0.00 41.33 5.36
528 529 2.123554 TGCACAACCACATGCCCA 60.124 55.556 0.00 0.00 41.33 5.36
529 530 1.746322 CTGCACAACCACATGCCCAA 61.746 55.000 0.00 0.00 41.33 4.12
530 531 1.300853 GCACAACCACATGCCCAAC 60.301 57.895 0.00 0.00 35.73 3.77
531 532 1.367102 CACAACCACATGCCCAACC 59.633 57.895 0.00 0.00 0.00 3.77
532 533 1.075674 ACAACCACATGCCCAACCA 60.076 52.632 0.00 0.00 0.00 3.67
533 534 0.471591 ACAACCACATGCCCAACCAT 60.472 50.000 0.00 0.00 0.00 3.55
534 535 0.686224 CAACCACATGCCCAACCATT 59.314 50.000 0.00 0.00 0.00 3.16
535 536 1.898472 CAACCACATGCCCAACCATTA 59.102 47.619 0.00 0.00 0.00 1.90
536 537 2.301296 CAACCACATGCCCAACCATTAA 59.699 45.455 0.00 0.00 0.00 1.40
537 538 2.178580 ACCACATGCCCAACCATTAAG 58.821 47.619 0.00 0.00 0.00 1.85
538 539 1.134729 CCACATGCCCAACCATTAAGC 60.135 52.381 0.00 0.00 0.00 3.09
539 540 1.134729 CACATGCCCAACCATTAAGCC 60.135 52.381 0.00 0.00 0.00 4.35
540 541 1.193323 CATGCCCAACCATTAAGCCA 58.807 50.000 0.00 0.00 0.00 4.75
541 542 1.554160 CATGCCCAACCATTAAGCCAA 59.446 47.619 0.00 0.00 0.00 4.52
542 543 1.265236 TGCCCAACCATTAAGCCAAG 58.735 50.000 0.00 0.00 0.00 3.61
543 544 0.536724 GCCCAACCATTAAGCCAAGG 59.463 55.000 0.00 0.00 0.00 3.61
544 545 0.536724 CCCAACCATTAAGCCAAGGC 59.463 55.000 2.02 2.02 42.33 4.35
602 603 9.045223 CGAATATTGGATTCTCATCAGTTTACA 57.955 33.333 0.00 0.00 0.00 2.41
663 670 0.035739 GGACACCTTTCCAAGCCGTA 59.964 55.000 0.00 0.00 35.49 4.02
742 758 4.141688 GGAAACCAACTCTATCTACCCTGG 60.142 50.000 0.00 0.00 0.00 4.45
776 792 3.458163 GTCGATCGGGCCTCCACA 61.458 66.667 16.41 0.00 0.00 4.17
777 793 3.458163 TCGATCGGGCCTCCACAC 61.458 66.667 16.41 0.00 0.00 3.82
871 909 3.281751 CTCACGACGCGGCAACAAG 62.282 63.158 14.85 0.00 0.00 3.16
883 921 0.318955 GCAACAAGCAGCACGGATTT 60.319 50.000 0.00 0.00 44.79 2.17
895 933 3.505680 AGCACGGATTTGTTTATGCTTCA 59.494 39.130 0.00 0.00 40.39 3.02
1029 1085 2.359478 GGAAAAAGCCTCGCCCGA 60.359 61.111 0.00 0.00 0.00 5.14
1182 1238 2.431601 GAGCGCGTGAAGCTGACT 60.432 61.111 8.43 0.00 46.13 3.41
1185 1241 2.440569 GCGCGTGAAGCTGACTCTC 61.441 63.158 8.43 0.00 45.59 3.20
1254 1310 2.668550 GTCCGCGGCAAGAACCTT 60.669 61.111 23.51 0.00 0.00 3.50
1256 1312 1.079405 TCCGCGGCAAGAACCTTAG 60.079 57.895 23.51 0.00 0.00 2.18
1367 1423 4.451150 GGCGCTCGACACCATCCA 62.451 66.667 7.64 0.00 0.00 3.41
1386 1442 0.603569 ACAAATCCTGCGACGAGACT 59.396 50.000 0.00 0.00 0.00 3.24
1452 1508 2.182030 CACCTCTTCCTCGTCGGC 59.818 66.667 0.00 0.00 0.00 5.54
1550 1612 2.181021 GTACGACACCGCCCTCAG 59.819 66.667 0.00 0.00 39.95 3.35
1728 1790 4.505217 CACAAGGCGCGCATCGTC 62.505 66.667 34.42 15.34 44.51 4.20
1818 1880 1.207089 CTGATAAAGGACACGAGGGCA 59.793 52.381 0.00 0.00 0.00 5.36
2031 2093 2.151202 GTGAAGAAGATCGGTGGCAAA 58.849 47.619 0.00 0.00 0.00 3.68
2061 2123 3.638627 TCTTATCGTCCATGCATGTCTCT 59.361 43.478 24.58 8.33 0.00 3.10
2064 2126 0.107993 CGTCCATGCATGTCTCTGGT 60.108 55.000 24.58 0.00 0.00 4.00
2204 2280 7.117379 GGTGTACGCTCTCTGTTTTACTTTTAT 59.883 37.037 6.35 0.00 0.00 1.40
2205 2281 8.493547 GTGTACGCTCTCTGTTTTACTTTTATT 58.506 33.333 0.00 0.00 0.00 1.40
2206 2282 9.695526 TGTACGCTCTCTGTTTTACTTTTATTA 57.304 29.630 0.00 0.00 0.00 0.98
2231 2313 7.353497 ACTTGAACTATATATCGTGTGTCTCG 58.647 38.462 0.00 0.00 0.00 4.04
2232 2314 5.686834 TGAACTATATATCGTGTGTCTCGC 58.313 41.667 0.00 0.00 0.00 5.03
2233 2315 5.469084 TGAACTATATATCGTGTGTCTCGCT 59.531 40.000 0.00 0.00 0.00 4.93
2234 2316 5.533533 ACTATATATCGTGTGTCTCGCTC 57.466 43.478 0.00 0.00 0.00 5.03
2298 2401 8.356657 CCATGTTTATTCAGTTTTGTAACCAGA 58.643 33.333 0.00 0.00 34.71 3.86
2317 2422 8.458573 AACCAGACAAAGTTTATACATTGTGA 57.541 30.769 10.90 0.00 43.86 3.58
2330 2437 9.619316 TTTATACATTGTGAAGGTGATTTTTCG 57.381 29.630 0.00 0.00 0.00 3.46
2345 2455 8.534778 GGTGATTTTTCGCTGAAAATATCAATC 58.465 33.333 22.83 18.34 40.50 2.67
2357 2467 9.884465 CTGAAAATATCAATCCGAAAATCTACC 57.116 33.333 0.00 0.00 37.67 3.18
2401 4443 4.735132 TAGCACGTGGTGGCTCGC 62.735 66.667 29.36 6.31 41.41 5.03
2459 4501 2.286365 TCTTCGTTTTCCCATGCCTT 57.714 45.000 0.00 0.00 0.00 4.35
2467 4509 4.503910 GTTTTCCCATGCCTTATTTGGAC 58.496 43.478 0.00 0.00 31.94 4.02
2468 4510 2.051334 TCCCATGCCTTATTTGGACG 57.949 50.000 0.00 0.00 31.94 4.79
2474 4516 3.627395 TGCCTTATTTGGACGACATCT 57.373 42.857 0.00 0.00 0.00 2.90
2499 4541 4.123497 TGTGATACGTGCTCTGCTTATT 57.877 40.909 0.00 0.00 0.00 1.40
2508 4550 5.084722 CGTGCTCTGCTTATTTTTCTTCAG 58.915 41.667 0.00 0.00 0.00 3.02
2831 4873 5.647658 TCAACGTTGGAAGATAGCATTTCAT 59.352 36.000 27.02 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.890147 ACCTAGGACTACGCCTAATGAAG 59.110 47.826 17.98 0.00 39.91 3.02
1 2 3.907221 ACCTAGGACTACGCCTAATGAA 58.093 45.455 17.98 0.00 39.91 2.57
2 3 3.589951 ACCTAGGACTACGCCTAATGA 57.410 47.619 17.98 0.00 39.91 2.57
3 4 4.649692 TCTACCTAGGACTACGCCTAATG 58.350 47.826 17.98 0.00 39.91 1.90
4 5 4.350520 ACTCTACCTAGGACTACGCCTAAT 59.649 45.833 17.98 0.00 39.91 1.73
5 6 3.713764 ACTCTACCTAGGACTACGCCTAA 59.286 47.826 17.98 0.00 39.91 2.69
6 7 3.312890 ACTCTACCTAGGACTACGCCTA 58.687 50.000 17.98 0.00 39.50 3.93
7 8 2.104622 GACTCTACCTAGGACTACGCCT 59.895 54.545 17.98 0.00 42.15 5.52
8 9 2.493035 GACTCTACCTAGGACTACGCC 58.507 57.143 17.98 0.00 0.00 5.68
9 10 2.134346 CGACTCTACCTAGGACTACGC 58.866 57.143 17.98 0.00 0.00 4.42
10 11 2.547642 CCCGACTCTACCTAGGACTACG 60.548 59.091 17.98 12.41 0.00 3.51
11 12 2.437651 ACCCGACTCTACCTAGGACTAC 59.562 54.545 17.98 0.79 0.00 2.73
12 13 2.703007 GACCCGACTCTACCTAGGACTA 59.297 54.545 17.98 0.00 0.00 2.59
13 14 1.490069 GACCCGACTCTACCTAGGACT 59.510 57.143 17.98 0.00 0.00 3.85
14 15 1.809651 CGACCCGACTCTACCTAGGAC 60.810 61.905 17.98 0.00 0.00 3.85
15 16 0.467384 CGACCCGACTCTACCTAGGA 59.533 60.000 17.98 0.00 0.00 2.94
16 17 0.534652 CCGACCCGACTCTACCTAGG 60.535 65.000 7.41 7.41 0.00 3.02
17 18 0.467384 TCCGACCCGACTCTACCTAG 59.533 60.000 0.00 0.00 0.00 3.02
18 19 0.911769 TTCCGACCCGACTCTACCTA 59.088 55.000 0.00 0.00 0.00 3.08
19 20 0.394080 CTTCCGACCCGACTCTACCT 60.394 60.000 0.00 0.00 0.00 3.08
20 21 1.382692 CCTTCCGACCCGACTCTACC 61.383 65.000 0.00 0.00 0.00 3.18
21 22 1.382692 CCCTTCCGACCCGACTCTAC 61.383 65.000 0.00 0.00 0.00 2.59
22 23 1.077212 CCCTTCCGACCCGACTCTA 60.077 63.158 0.00 0.00 0.00 2.43
23 24 2.362632 CCCTTCCGACCCGACTCT 60.363 66.667 0.00 0.00 0.00 3.24
24 25 2.362120 TCCCTTCCGACCCGACTC 60.362 66.667 0.00 0.00 0.00 3.36
25 26 2.362632 CTCCCTTCCGACCCGACT 60.363 66.667 0.00 0.00 0.00 4.18
26 27 1.328430 ATTCTCCCTTCCGACCCGAC 61.328 60.000 0.00 0.00 0.00 4.79
27 28 1.001248 ATTCTCCCTTCCGACCCGA 59.999 57.895 0.00 0.00 0.00 5.14
28 29 1.144057 CATTCTCCCTTCCGACCCG 59.856 63.158 0.00 0.00 0.00 5.28
29 30 0.107654 CACATTCTCCCTTCCGACCC 60.108 60.000 0.00 0.00 0.00 4.46
30 31 0.107654 CCACATTCTCCCTTCCGACC 60.108 60.000 0.00 0.00 0.00 4.79
31 32 0.107654 CCCACATTCTCCCTTCCGAC 60.108 60.000 0.00 0.00 0.00 4.79
32 33 1.910580 GCCCACATTCTCCCTTCCGA 61.911 60.000 0.00 0.00 0.00 4.55
33 34 1.452108 GCCCACATTCTCCCTTCCG 60.452 63.158 0.00 0.00 0.00 4.30
34 35 1.213296 TAGCCCACATTCTCCCTTCC 58.787 55.000 0.00 0.00 0.00 3.46
35 36 3.217626 CAATAGCCCACATTCTCCCTTC 58.782 50.000 0.00 0.00 0.00 3.46
36 37 2.687914 GCAATAGCCCACATTCTCCCTT 60.688 50.000 0.00 0.00 33.58 3.95
37 38 1.133668 GCAATAGCCCACATTCTCCCT 60.134 52.381 0.00 0.00 33.58 4.20
38 39 1.133668 AGCAATAGCCCACATTCTCCC 60.134 52.381 0.00 0.00 43.56 4.30
39 40 1.952296 CAGCAATAGCCCACATTCTCC 59.048 52.381 0.00 0.00 43.56 3.71
40 41 1.952296 CCAGCAATAGCCCACATTCTC 59.048 52.381 0.00 0.00 43.56 2.87
41 42 2.025863 GCCAGCAATAGCCCACATTCT 61.026 52.381 0.00 0.00 43.56 2.40
42 43 0.386838 GCCAGCAATAGCCCACATTC 59.613 55.000 0.00 0.00 43.56 2.67
43 44 0.324552 TGCCAGCAATAGCCCACATT 60.325 50.000 0.00 0.00 43.56 2.71
44 45 0.324552 TTGCCAGCAATAGCCCACAT 60.325 50.000 0.00 0.00 43.56 3.21
45 46 0.966875 CTTGCCAGCAATAGCCCACA 60.967 55.000 5.38 0.00 43.56 4.17
46 47 0.967380 ACTTGCCAGCAATAGCCCAC 60.967 55.000 5.38 0.00 43.56 4.61
47 48 0.251742 AACTTGCCAGCAATAGCCCA 60.252 50.000 5.38 0.00 43.56 5.36
48 49 0.897621 AAACTTGCCAGCAATAGCCC 59.102 50.000 5.38 0.00 43.56 5.19
49 50 3.866883 TTAAACTTGCCAGCAATAGCC 57.133 42.857 5.38 0.00 43.56 3.93
50 51 4.627035 CCTTTTAAACTTGCCAGCAATAGC 59.373 41.667 5.38 0.00 42.56 2.97
51 52 6.024552 TCCTTTTAAACTTGCCAGCAATAG 57.975 37.500 5.38 0.00 35.20 1.73
52 53 5.566627 GCTCCTTTTAAACTTGCCAGCAATA 60.567 40.000 5.38 0.00 35.20 1.90
53 54 4.800582 GCTCCTTTTAAACTTGCCAGCAAT 60.801 41.667 5.38 0.00 35.20 3.56
54 55 3.492482 GCTCCTTTTAAACTTGCCAGCAA 60.492 43.478 4.78 4.78 0.00 3.91
55 56 2.035832 GCTCCTTTTAAACTTGCCAGCA 59.964 45.455 0.00 0.00 0.00 4.41
56 57 2.035832 TGCTCCTTTTAAACTTGCCAGC 59.964 45.455 0.00 0.00 0.00 4.85
57 58 4.240096 CATGCTCCTTTTAAACTTGCCAG 58.760 43.478 0.00 0.00 0.00 4.85
58 59 3.006752 CCATGCTCCTTTTAAACTTGCCA 59.993 43.478 0.00 0.00 0.00 4.92
59 60 3.258123 TCCATGCTCCTTTTAAACTTGCC 59.742 43.478 0.00 0.00 0.00 4.52
60 61 4.237724 GTCCATGCTCCTTTTAAACTTGC 58.762 43.478 0.00 0.00 0.00 4.01
61 62 4.321974 GGGTCCATGCTCCTTTTAAACTTG 60.322 45.833 0.00 0.00 0.00 3.16
62 63 3.832490 GGGTCCATGCTCCTTTTAAACTT 59.168 43.478 0.00 0.00 0.00 2.66
63 64 3.431415 GGGTCCATGCTCCTTTTAAACT 58.569 45.455 0.00 0.00 0.00 2.66
64 65 2.496070 GGGGTCCATGCTCCTTTTAAAC 59.504 50.000 0.00 0.00 0.00 2.01
65 66 2.381961 AGGGGTCCATGCTCCTTTTAAA 59.618 45.455 0.00 0.00 35.36 1.52
66 67 2.000048 AGGGGTCCATGCTCCTTTTAA 59.000 47.619 0.00 0.00 35.36 1.52
67 68 1.681229 AGGGGTCCATGCTCCTTTTA 58.319 50.000 0.00 0.00 35.36 1.52
68 69 0.786435 AAGGGGTCCATGCTCCTTTT 59.214 50.000 0.00 0.00 46.63 2.27
69 70 2.491271 AAGGGGTCCATGCTCCTTT 58.509 52.632 0.00 0.00 46.63 3.11
70 71 4.276055 AAGGGGTCCATGCTCCTT 57.724 55.556 0.00 0.00 44.12 3.36
71 72 0.551131 AAGAAGGGGTCCATGCTCCT 60.551 55.000 0.00 0.00 42.17 3.69
72 73 0.106967 GAAGAAGGGGTCCATGCTCC 60.107 60.000 0.00 0.00 0.00 4.70
73 74 0.106967 GGAAGAAGGGGTCCATGCTC 60.107 60.000 0.00 0.00 33.79 4.26
74 75 0.551131 AGGAAGAAGGGGTCCATGCT 60.551 55.000 0.00 0.00 36.28 3.79
75 76 0.332972 AAGGAAGAAGGGGTCCATGC 59.667 55.000 0.00 0.00 36.28 4.06
76 77 1.407437 CGAAGGAAGAAGGGGTCCATG 60.407 57.143 0.00 0.00 36.28 3.66
77 78 0.912486 CGAAGGAAGAAGGGGTCCAT 59.088 55.000 0.00 0.00 36.28 3.41
78 79 2.372852 CGAAGGAAGAAGGGGTCCA 58.627 57.895 0.00 0.00 36.28 4.02
92 93 2.325082 CCCACCGTTCAAGCCGAAG 61.325 63.158 0.00 0.00 33.09 3.79
93 94 2.281208 CCCACCGTTCAAGCCGAA 60.281 61.111 0.00 0.00 0.00 4.30
96 97 4.966787 TGGCCCACCGTTCAAGCC 62.967 66.667 0.00 0.00 44.13 4.35
97 98 2.741486 TACTGGCCCACCGTTCAAGC 62.741 60.000 0.00 0.00 39.70 4.01
98 99 0.673644 CTACTGGCCCACCGTTCAAG 60.674 60.000 0.00 0.00 39.70 3.02
99 100 1.373435 CTACTGGCCCACCGTTCAA 59.627 57.895 0.00 0.00 39.70 2.69
100 101 1.839747 ACTACTGGCCCACCGTTCA 60.840 57.895 0.00 0.00 39.70 3.18
101 102 1.375523 CACTACTGGCCCACCGTTC 60.376 63.158 0.00 0.00 39.70 3.95
102 103 1.827399 CTCACTACTGGCCCACCGTT 61.827 60.000 0.00 0.00 39.70 4.44
103 104 2.203728 TCACTACTGGCCCACCGT 60.204 61.111 0.00 0.00 39.70 4.83
104 105 2.579201 CTCACTACTGGCCCACCG 59.421 66.667 0.00 0.00 39.70 4.94
105 106 0.983378 ATCCTCACTACTGGCCCACC 60.983 60.000 0.00 0.00 0.00 4.61
106 107 0.912486 AATCCTCACTACTGGCCCAC 59.088 55.000 0.00 0.00 0.00 4.61
107 108 2.561209 TAATCCTCACTACTGGCCCA 57.439 50.000 0.00 0.00 0.00 5.36
108 109 2.972713 TCATAATCCTCACTACTGGCCC 59.027 50.000 0.00 0.00 0.00 5.80
109 110 3.556004 GCTCATAATCCTCACTACTGGCC 60.556 52.174 0.00 0.00 0.00 5.36
110 111 3.658709 GCTCATAATCCTCACTACTGGC 58.341 50.000 0.00 0.00 0.00 4.85
111 112 3.319405 ACGCTCATAATCCTCACTACTGG 59.681 47.826 0.00 0.00 0.00 4.00
112 113 4.576216 ACGCTCATAATCCTCACTACTG 57.424 45.455 0.00 0.00 0.00 2.74
113 114 4.402793 ACAACGCTCATAATCCTCACTACT 59.597 41.667 0.00 0.00 0.00 2.57
114 115 4.683832 ACAACGCTCATAATCCTCACTAC 58.316 43.478 0.00 0.00 0.00 2.73
115 116 6.459670 TTACAACGCTCATAATCCTCACTA 57.540 37.500 0.00 0.00 0.00 2.74
116 117 3.895232 ACAACGCTCATAATCCTCACT 57.105 42.857 0.00 0.00 0.00 3.41
117 118 5.523916 ACATTACAACGCTCATAATCCTCAC 59.476 40.000 0.00 0.00 0.00 3.51
118 119 5.523552 CACATTACAACGCTCATAATCCTCA 59.476 40.000 0.00 0.00 0.00 3.86
119 120 5.753438 TCACATTACAACGCTCATAATCCTC 59.247 40.000 0.00 0.00 0.00 3.71
120 121 5.523916 GTCACATTACAACGCTCATAATCCT 59.476 40.000 0.00 0.00 0.00 3.24
121 122 5.277345 GGTCACATTACAACGCTCATAATCC 60.277 44.000 0.00 0.00 0.00 3.01
122 123 5.277345 GGGTCACATTACAACGCTCATAATC 60.277 44.000 0.00 0.00 0.00 1.75
123 124 4.574828 GGGTCACATTACAACGCTCATAAT 59.425 41.667 0.00 0.00 0.00 1.28
124 125 3.936453 GGGTCACATTACAACGCTCATAA 59.064 43.478 0.00 0.00 0.00 1.90
125 126 3.196901 AGGGTCACATTACAACGCTCATA 59.803 43.478 0.00 0.00 31.32 2.15
126 127 2.027192 AGGGTCACATTACAACGCTCAT 60.027 45.455 0.00 0.00 31.32 2.90
127 128 1.346395 AGGGTCACATTACAACGCTCA 59.654 47.619 0.00 0.00 31.32 4.26
128 129 2.094762 AGGGTCACATTACAACGCTC 57.905 50.000 0.00 0.00 31.32 5.03
129 130 2.151202 CAAGGGTCACATTACAACGCT 58.849 47.619 0.00 0.00 37.75 5.07
130 131 1.877443 ACAAGGGTCACATTACAACGC 59.123 47.619 0.00 0.00 0.00 4.84
131 132 5.676532 TTTACAAGGGTCACATTACAACG 57.323 39.130 0.00 0.00 0.00 4.10
132 133 8.188139 CCATATTTACAAGGGTCACATTACAAC 58.812 37.037 0.00 0.00 0.00 3.32
133 134 7.891183 ACCATATTTACAAGGGTCACATTACAA 59.109 33.333 0.00 0.00 0.00 2.41
134 135 7.338196 CACCATATTTACAAGGGTCACATTACA 59.662 37.037 0.00 0.00 0.00 2.41
135 136 7.201785 CCACCATATTTACAAGGGTCACATTAC 60.202 40.741 0.00 0.00 0.00 1.89
136 137 6.831353 CCACCATATTTACAAGGGTCACATTA 59.169 38.462 0.00 0.00 0.00 1.90
137 138 5.656416 CCACCATATTTACAAGGGTCACATT 59.344 40.000 0.00 0.00 0.00 2.71
138 139 5.044476 TCCACCATATTTACAAGGGTCACAT 60.044 40.000 0.00 0.00 0.00 3.21
139 140 4.289934 TCCACCATATTTACAAGGGTCACA 59.710 41.667 0.00 0.00 0.00 3.58
140 141 4.850680 TCCACCATATTTACAAGGGTCAC 58.149 43.478 0.00 0.00 0.00 3.67
141 142 4.080015 CCTCCACCATATTTACAAGGGTCA 60.080 45.833 0.00 0.00 0.00 4.02
142 143 4.461198 CCTCCACCATATTTACAAGGGTC 58.539 47.826 0.00 0.00 0.00 4.46
143 144 3.372675 GCCTCCACCATATTTACAAGGGT 60.373 47.826 0.00 0.00 0.00 4.34
144 145 3.222603 GCCTCCACCATATTTACAAGGG 58.777 50.000 0.00 0.00 0.00 3.95
145 146 3.897239 TGCCTCCACCATATTTACAAGG 58.103 45.455 0.00 0.00 0.00 3.61
146 147 5.829924 AGAATGCCTCCACCATATTTACAAG 59.170 40.000 0.00 0.00 0.00 3.16
147 148 5.765510 AGAATGCCTCCACCATATTTACAA 58.234 37.500 0.00 0.00 0.00 2.41
148 149 5.387113 AGAATGCCTCCACCATATTTACA 57.613 39.130 0.00 0.00 0.00 2.41
149 150 6.507023 CAAAGAATGCCTCCACCATATTTAC 58.493 40.000 0.00 0.00 0.00 2.01
150 151 6.713762 CAAAGAATGCCTCCACCATATTTA 57.286 37.500 0.00 0.00 0.00 1.40
151 152 5.603170 CAAAGAATGCCTCCACCATATTT 57.397 39.130 0.00 0.00 0.00 1.40
227 228 4.661246 TACCGCCGCCGTCGTTTT 62.661 61.111 0.00 0.00 0.00 2.43
239 240 4.162690 CAGCCCTCCCACTACCGC 62.163 72.222 0.00 0.00 0.00 5.68
240 241 2.363795 TCAGCCCTCCCACTACCG 60.364 66.667 0.00 0.00 0.00 4.02
241 242 2.066999 CCTCAGCCCTCCCACTACC 61.067 68.421 0.00 0.00 0.00 3.18
242 243 2.066999 CCCTCAGCCCTCCCACTAC 61.067 68.421 0.00 0.00 0.00 2.73
243 244 2.368594 CCCTCAGCCCTCCCACTA 59.631 66.667 0.00 0.00 0.00 2.74
252 253 4.329545 TTCACACCGCCCTCAGCC 62.330 66.667 0.00 0.00 38.78 4.85
253 254 3.050275 GTTCACACCGCCCTCAGC 61.050 66.667 0.00 0.00 38.52 4.26
254 255 2.738521 CGTTCACACCGCCCTCAG 60.739 66.667 0.00 0.00 0.00 3.35
255 256 4.308458 CCGTTCACACCGCCCTCA 62.308 66.667 0.00 0.00 0.00 3.86
260 261 3.819877 AAGTCCCCGTTCACACCGC 62.820 63.158 0.00 0.00 0.00 5.68
261 262 0.033781 TAAAGTCCCCGTTCACACCG 59.966 55.000 0.00 0.00 0.00 4.94
262 263 2.259266 TTAAAGTCCCCGTTCACACC 57.741 50.000 0.00 0.00 0.00 4.16
263 264 4.841443 ATTTTAAAGTCCCCGTTCACAC 57.159 40.909 0.00 0.00 0.00 3.82
264 265 5.474189 CCTAATTTTAAAGTCCCCGTTCACA 59.526 40.000 0.00 0.00 0.00 3.58
265 266 5.106038 CCCTAATTTTAAAGTCCCCGTTCAC 60.106 44.000 0.00 0.00 0.00 3.18
266 267 5.011586 CCCTAATTTTAAAGTCCCCGTTCA 58.988 41.667 0.00 0.00 0.00 3.18
267 268 4.400251 CCCCTAATTTTAAAGTCCCCGTTC 59.600 45.833 0.00 0.00 0.00 3.95
268 269 4.044444 TCCCCTAATTTTAAAGTCCCCGTT 59.956 41.667 0.00 0.00 0.00 4.44
269 270 3.592877 TCCCCTAATTTTAAAGTCCCCGT 59.407 43.478 0.00 0.00 0.00 5.28
270 271 4.080186 TCTCCCCTAATTTTAAAGTCCCCG 60.080 45.833 0.00 0.00 0.00 5.73
271 272 5.461516 TCTCCCCTAATTTTAAAGTCCCC 57.538 43.478 0.00 0.00 0.00 4.81
272 273 7.973048 AATTCTCCCCTAATTTTAAAGTCCC 57.027 36.000 0.00 0.00 0.00 4.46
273 274 9.031537 TGAAATTCTCCCCTAATTTTAAAGTCC 57.968 33.333 0.00 0.00 36.82 3.85
274 275 9.856488 GTGAAATTCTCCCCTAATTTTAAAGTC 57.144 33.333 0.00 0.00 36.82 3.01
275 276 9.601810 AGTGAAATTCTCCCCTAATTTTAAAGT 57.398 29.630 0.00 0.00 36.82 2.66
278 279 9.031537 GGAAGTGAAATTCTCCCCTAATTTTAA 57.968 33.333 0.00 0.00 36.82 1.52
279 280 7.618117 GGGAAGTGAAATTCTCCCCTAATTTTA 59.382 37.037 7.38 0.00 36.82 1.52
280 281 6.440647 GGGAAGTGAAATTCTCCCCTAATTTT 59.559 38.462 7.38 0.00 36.82 1.82
281 282 5.958380 GGGAAGTGAAATTCTCCCCTAATTT 59.042 40.000 7.38 0.00 38.82 1.82
282 283 5.519808 GGGAAGTGAAATTCTCCCCTAATT 58.480 41.667 7.38 0.00 0.00 1.40
283 284 5.130705 GGGAAGTGAAATTCTCCCCTAAT 57.869 43.478 7.38 0.00 0.00 1.73
284 285 4.586306 GGGAAGTGAAATTCTCCCCTAA 57.414 45.455 7.38 0.00 0.00 2.69
287 288 1.682087 CGGGGAAGTGAAATTCTCCCC 60.682 57.143 21.69 21.69 45.66 4.81
288 289 1.682087 CCGGGGAAGTGAAATTCTCCC 60.682 57.143 9.59 9.59 45.66 4.30
289 290 1.751437 CCGGGGAAGTGAAATTCTCC 58.249 55.000 0.00 0.00 45.08 3.71
290 291 1.095600 GCCGGGGAAGTGAAATTCTC 58.904 55.000 2.18 0.00 0.00 2.87
291 292 0.323451 GGCCGGGGAAGTGAAATTCT 60.323 55.000 2.18 0.00 0.00 2.40
292 293 0.323451 AGGCCGGGGAAGTGAAATTC 60.323 55.000 2.18 0.00 0.00 2.17
293 294 0.323451 GAGGCCGGGGAAGTGAAATT 60.323 55.000 2.18 0.00 0.00 1.82
294 295 1.208165 AGAGGCCGGGGAAGTGAAAT 61.208 55.000 2.18 0.00 0.00 2.17
295 296 1.846124 AGAGGCCGGGGAAGTGAAA 60.846 57.895 2.18 0.00 0.00 2.69
296 297 2.203938 AGAGGCCGGGGAAGTGAA 60.204 61.111 2.18 0.00 0.00 3.18
297 298 3.003173 CAGAGGCCGGGGAAGTGA 61.003 66.667 2.18 0.00 0.00 3.41
298 299 4.785453 GCAGAGGCCGGGGAAGTG 62.785 72.222 2.18 0.00 0.00 3.16
300 301 4.785453 GTGCAGAGGCCGGGGAAG 62.785 72.222 2.18 0.00 40.13 3.46
305 306 2.859273 CTAGTTGGTGCAGAGGCCGG 62.859 65.000 0.00 0.00 40.13 6.13
306 307 1.448540 CTAGTTGGTGCAGAGGCCG 60.449 63.158 0.00 0.00 40.13 6.13
307 308 1.078143 CCTAGTTGGTGCAGAGGCC 60.078 63.158 0.00 0.00 40.13 5.19
308 309 1.078143 CCCTAGTTGGTGCAGAGGC 60.078 63.158 0.00 0.00 41.68 4.70
309 310 1.134280 CATCCCTAGTTGGTGCAGAGG 60.134 57.143 0.00 0.00 0.00 3.69
310 311 1.745141 GCATCCCTAGTTGGTGCAGAG 60.745 57.143 9.27 0.00 34.56 3.35
311 312 0.253044 GCATCCCTAGTTGGTGCAGA 59.747 55.000 9.27 0.00 34.56 4.26
312 313 0.035152 TGCATCCCTAGTTGGTGCAG 60.035 55.000 12.10 0.00 37.44 4.41
313 314 0.625316 ATGCATCCCTAGTTGGTGCA 59.375 50.000 16.90 16.90 42.44 4.57
314 315 2.222027 GTATGCATCCCTAGTTGGTGC 58.778 52.381 0.19 7.60 34.81 5.01
315 316 2.483876 CGTATGCATCCCTAGTTGGTG 58.516 52.381 0.19 0.00 0.00 4.17
316 317 1.416401 CCGTATGCATCCCTAGTTGGT 59.584 52.381 0.19 0.00 0.00 3.67
317 318 1.878102 GCCGTATGCATCCCTAGTTGG 60.878 57.143 0.19 0.00 40.77 3.77
318 319 1.512926 GCCGTATGCATCCCTAGTTG 58.487 55.000 0.19 0.00 40.77 3.16
319 320 0.396811 GGCCGTATGCATCCCTAGTT 59.603 55.000 0.19 0.00 43.89 2.24
320 321 0.762842 TGGCCGTATGCATCCCTAGT 60.763 55.000 0.19 0.00 43.89 2.57
321 322 0.615331 ATGGCCGTATGCATCCCTAG 59.385 55.000 0.19 0.00 43.89 3.02
322 323 1.064003 AATGGCCGTATGCATCCCTA 58.936 50.000 0.19 0.00 43.89 3.53
323 324 0.185901 AAATGGCCGTATGCATCCCT 59.814 50.000 0.19 0.00 43.89 4.20
324 325 1.039856 AAAATGGCCGTATGCATCCC 58.960 50.000 0.19 0.18 43.89 3.85
325 326 4.519540 ATTAAAATGGCCGTATGCATCC 57.480 40.909 0.19 0.00 43.89 3.51
326 327 6.851609 TCATATTAAAATGGCCGTATGCATC 58.148 36.000 0.19 0.00 43.89 3.91
327 328 6.434028 ACTCATATTAAAATGGCCGTATGCAT 59.566 34.615 3.79 3.79 43.89 3.96
328 329 5.767665 ACTCATATTAAAATGGCCGTATGCA 59.232 36.000 0.00 0.00 43.89 3.96
329 330 6.254281 ACTCATATTAAAATGGCCGTATGC 57.746 37.500 0.00 0.00 40.16 3.14
330 331 9.161629 TGATACTCATATTAAAATGGCCGTATG 57.838 33.333 0.00 0.00 0.00 2.39
331 332 9.383519 CTGATACTCATATTAAAATGGCCGTAT 57.616 33.333 0.00 0.00 0.00 3.06
332 333 7.822334 CCTGATACTCATATTAAAATGGCCGTA 59.178 37.037 0.00 0.00 0.00 4.02
333 334 6.655003 CCTGATACTCATATTAAAATGGCCGT 59.345 38.462 0.00 0.00 0.00 5.68
334 335 6.878923 TCCTGATACTCATATTAAAATGGCCG 59.121 38.462 0.00 0.00 0.00 6.13
335 336 8.814038 ATCCTGATACTCATATTAAAATGGCC 57.186 34.615 0.00 0.00 0.00 5.36
344 345 9.950496 GACCATGTTTATCCTGATACTCATATT 57.050 33.333 0.00 0.00 0.00 1.28
345 346 8.543774 GGACCATGTTTATCCTGATACTCATAT 58.456 37.037 0.00 0.00 0.00 1.78
346 347 7.734865 AGGACCATGTTTATCCTGATACTCATA 59.265 37.037 0.00 0.00 41.47 2.15
347 348 6.560304 AGGACCATGTTTATCCTGATACTCAT 59.440 38.462 0.00 0.00 41.47 2.90
348 349 5.905331 AGGACCATGTTTATCCTGATACTCA 59.095 40.000 0.00 0.00 41.47 3.41
349 350 6.042093 TGAGGACCATGTTTATCCTGATACTC 59.958 42.308 9.18 0.00 43.12 2.59
350 351 5.905331 TGAGGACCATGTTTATCCTGATACT 59.095 40.000 9.18 0.00 43.12 2.12
351 352 6.042093 TCTGAGGACCATGTTTATCCTGATAC 59.958 42.308 9.18 0.00 43.12 2.24
352 353 6.143206 TCTGAGGACCATGTTTATCCTGATA 58.857 40.000 9.18 0.00 43.12 2.15
353 354 4.971282 TCTGAGGACCATGTTTATCCTGAT 59.029 41.667 9.18 0.00 43.12 2.90
354 355 4.361783 TCTGAGGACCATGTTTATCCTGA 58.638 43.478 9.18 1.84 43.12 3.86
355 356 4.760530 TCTGAGGACCATGTTTATCCTG 57.239 45.455 9.18 0.00 43.12 3.86
356 357 5.983333 ATTCTGAGGACCATGTTTATCCT 57.017 39.130 5.09 5.09 45.84 3.24
357 358 7.340487 AGAAAATTCTGAGGACCATGTTTATCC 59.660 37.037 0.00 0.00 35.89 2.59
358 359 8.286191 AGAAAATTCTGAGGACCATGTTTATC 57.714 34.615 0.00 0.00 35.89 1.75
359 360 9.753674 TTAGAAAATTCTGAGGACCATGTTTAT 57.246 29.630 5.93 0.00 38.19 1.40
360 361 9.581289 TTTAGAAAATTCTGAGGACCATGTTTA 57.419 29.630 5.93 0.00 38.19 2.01
361 362 8.477419 TTTAGAAAATTCTGAGGACCATGTTT 57.523 30.769 5.93 0.00 38.19 2.83
362 363 8.655935 ATTTAGAAAATTCTGAGGACCATGTT 57.344 30.769 5.93 0.00 38.19 2.71
363 364 9.753674 TTATTTAGAAAATTCTGAGGACCATGT 57.246 29.630 5.93 0.00 38.19 3.21
365 366 9.981460 ACTTATTTAGAAAATTCTGAGGACCAT 57.019 29.630 5.93 0.00 38.19 3.55
415 416 4.202202 TCAAATTTGATGTGTGGTGGAACC 60.202 41.667 16.91 0.00 45.30 3.62
416 417 4.942852 TCAAATTTGATGTGTGGTGGAAC 58.057 39.130 16.91 0.00 31.01 3.62
417 418 5.804944 ATCAAATTTGATGTGTGGTGGAA 57.195 34.783 28.57 1.66 45.63 3.53
457 458 5.316167 TGATAGGTGATGCACAGAGTTTTT 58.684 37.500 0.00 0.00 35.86 1.94
458 459 4.910195 TGATAGGTGATGCACAGAGTTTT 58.090 39.130 0.00 0.00 35.86 2.43
459 460 4.558226 TGATAGGTGATGCACAGAGTTT 57.442 40.909 0.00 0.00 35.86 2.66
460 461 4.558226 TTGATAGGTGATGCACAGAGTT 57.442 40.909 0.00 0.00 35.86 3.01
461 462 4.767578 ATTGATAGGTGATGCACAGAGT 57.232 40.909 0.00 0.00 35.86 3.24
462 463 5.366460 AGAATTGATAGGTGATGCACAGAG 58.634 41.667 0.00 0.00 35.86 3.35
463 464 5.363562 AGAATTGATAGGTGATGCACAGA 57.636 39.130 0.00 0.00 35.86 3.41
464 465 6.988580 TCTTAGAATTGATAGGTGATGCACAG 59.011 38.462 0.00 0.00 35.86 3.66
465 466 6.888105 TCTTAGAATTGATAGGTGATGCACA 58.112 36.000 0.00 0.00 35.86 4.57
466 467 7.792374 TTCTTAGAATTGATAGGTGATGCAC 57.208 36.000 0.00 0.00 0.00 4.57
467 468 8.843262 CAATTCTTAGAATTGATAGGTGATGCA 58.157 33.333 32.38 0.00 39.36 3.96
468 469 9.060347 TCAATTCTTAGAATTGATAGGTGATGC 57.940 33.333 33.61 0.00 40.53 3.91
473 474 9.319143 CGAGTTCAATTCTTAGAATTGATAGGT 57.681 33.333 35.87 25.01 43.62 3.08
474 475 8.768955 CCGAGTTCAATTCTTAGAATTGATAGG 58.231 37.037 35.87 30.48 43.62 2.57
475 476 8.768955 CCCGAGTTCAATTCTTAGAATTGATAG 58.231 37.037 35.87 27.61 43.62 2.08
476 477 8.265055 ACCCGAGTTCAATTCTTAGAATTGATA 58.735 33.333 35.87 26.77 43.62 2.15
477 478 7.112779 ACCCGAGTTCAATTCTTAGAATTGAT 58.887 34.615 35.87 27.28 43.62 2.57
478 479 6.472887 ACCCGAGTTCAATTCTTAGAATTGA 58.527 36.000 33.61 33.61 42.82 2.57
479 480 6.455646 CGACCCGAGTTCAATTCTTAGAATTG 60.456 42.308 30.96 30.96 38.60 2.32
480 481 5.581085 CGACCCGAGTTCAATTCTTAGAATT 59.419 40.000 13.82 13.82 0.00 2.17
481 482 5.109903 CGACCCGAGTTCAATTCTTAGAAT 58.890 41.667 0.99 0.99 0.00 2.40
482 483 4.021719 ACGACCCGAGTTCAATTCTTAGAA 60.022 41.667 0.00 0.00 0.00 2.10
483 484 3.508793 ACGACCCGAGTTCAATTCTTAGA 59.491 43.478 0.00 0.00 0.00 2.10
484 485 3.846360 ACGACCCGAGTTCAATTCTTAG 58.154 45.455 0.00 0.00 0.00 2.18
485 486 3.947910 ACGACCCGAGTTCAATTCTTA 57.052 42.857 0.00 0.00 0.00 2.10
486 487 2.833631 ACGACCCGAGTTCAATTCTT 57.166 45.000 0.00 0.00 0.00 2.52
487 488 2.833631 AACGACCCGAGTTCAATTCT 57.166 45.000 0.00 0.00 0.00 2.40
488 489 3.611549 GTCTAACGACCCGAGTTCAATTC 59.388 47.826 0.00 0.00 33.98 2.17
489 490 3.257624 AGTCTAACGACCCGAGTTCAATT 59.742 43.478 0.00 0.00 41.16 2.32
490 491 2.824341 AGTCTAACGACCCGAGTTCAAT 59.176 45.455 0.00 0.00 41.16 2.57
491 492 2.030540 CAGTCTAACGACCCGAGTTCAA 60.031 50.000 0.00 0.00 41.16 2.69
492 493 1.538512 CAGTCTAACGACCCGAGTTCA 59.461 52.381 0.00 0.00 41.16 3.18
493 494 1.731750 GCAGTCTAACGACCCGAGTTC 60.732 57.143 0.00 0.00 41.16 3.01
494 495 0.243095 GCAGTCTAACGACCCGAGTT 59.757 55.000 0.00 0.00 41.16 3.01
495 496 0.892358 TGCAGTCTAACGACCCGAGT 60.892 55.000 0.00 0.00 41.16 4.18
496 497 0.456312 GTGCAGTCTAACGACCCGAG 60.456 60.000 0.00 0.00 41.16 4.63
497 498 1.174078 TGTGCAGTCTAACGACCCGA 61.174 55.000 0.00 0.00 41.16 5.14
498 499 0.319211 TTGTGCAGTCTAACGACCCG 60.319 55.000 0.00 0.00 41.16 5.28
499 500 1.145803 GTTGTGCAGTCTAACGACCC 58.854 55.000 0.00 0.00 41.16 4.46
500 501 1.145803 GGTTGTGCAGTCTAACGACC 58.854 55.000 8.02 8.02 42.26 4.79
501 502 1.525619 GTGGTTGTGCAGTCTAACGAC 59.474 52.381 0.00 0.00 40.54 4.34
502 503 1.137282 TGTGGTTGTGCAGTCTAACGA 59.863 47.619 0.00 0.00 0.00 3.85
503 504 1.577468 TGTGGTTGTGCAGTCTAACG 58.423 50.000 0.00 0.00 0.00 3.18
504 505 2.350772 GCATGTGGTTGTGCAGTCTAAC 60.351 50.000 0.00 0.00 40.94 2.34
505 506 1.879380 GCATGTGGTTGTGCAGTCTAA 59.121 47.619 0.00 0.00 40.94 2.10
506 507 1.522668 GCATGTGGTTGTGCAGTCTA 58.477 50.000 0.00 0.00 40.94 2.59
507 508 1.174712 GGCATGTGGTTGTGCAGTCT 61.175 55.000 0.00 0.00 43.00 3.24
508 509 1.286880 GGCATGTGGTTGTGCAGTC 59.713 57.895 0.00 0.00 43.00 3.51
509 510 2.202395 GGGCATGTGGTTGTGCAGT 61.202 57.895 0.00 0.00 43.00 4.40
510 511 1.746322 TTGGGCATGTGGTTGTGCAG 61.746 55.000 0.00 0.00 43.00 4.41
511 512 1.759692 TTGGGCATGTGGTTGTGCA 60.760 52.632 0.00 0.00 43.00 4.57
512 513 1.300853 GTTGGGCATGTGGTTGTGC 60.301 57.895 0.00 0.00 40.55 4.57
513 514 1.367102 GGTTGGGCATGTGGTTGTG 59.633 57.895 0.00 0.00 0.00 3.33
514 515 0.471591 ATGGTTGGGCATGTGGTTGT 60.472 50.000 0.00 0.00 0.00 3.32
515 516 0.686224 AATGGTTGGGCATGTGGTTG 59.314 50.000 0.00 0.00 0.00 3.77
516 517 2.317371 TAATGGTTGGGCATGTGGTT 57.683 45.000 0.00 0.00 0.00 3.67
517 518 2.178580 CTTAATGGTTGGGCATGTGGT 58.821 47.619 0.00 0.00 0.00 4.16
518 519 1.134729 GCTTAATGGTTGGGCATGTGG 60.135 52.381 0.00 0.00 0.00 4.17
519 520 1.134729 GGCTTAATGGTTGGGCATGTG 60.135 52.381 0.00 0.00 0.00 3.21
520 521 1.194218 GGCTTAATGGTTGGGCATGT 58.806 50.000 0.00 0.00 0.00 3.21
521 522 1.193323 TGGCTTAATGGTTGGGCATG 58.807 50.000 0.00 0.00 0.00 4.06
522 523 1.832998 CTTGGCTTAATGGTTGGGCAT 59.167 47.619 0.00 0.00 34.42 4.40
523 524 1.265236 CTTGGCTTAATGGTTGGGCA 58.735 50.000 0.00 0.00 0.00 5.36
524 525 0.536724 CCTTGGCTTAATGGTTGGGC 59.463 55.000 0.00 0.00 0.00 5.36
525 526 0.536724 GCCTTGGCTTAATGGTTGGG 59.463 55.000 4.11 0.00 0.00 4.12
526 527 1.478105 GAGCCTTGGCTTAATGGTTGG 59.522 52.381 15.92 0.00 0.00 3.77
527 528 2.424956 GAGAGCCTTGGCTTAATGGTTG 59.575 50.000 15.92 0.00 0.00 3.77
528 529 2.310052 AGAGAGCCTTGGCTTAATGGTT 59.690 45.455 15.92 0.00 0.00 3.67
529 530 1.918957 AGAGAGCCTTGGCTTAATGGT 59.081 47.619 15.92 0.00 0.00 3.55
530 531 2.725221 AGAGAGCCTTGGCTTAATGG 57.275 50.000 15.92 0.00 0.00 3.16
531 532 3.428589 GCAAAGAGAGCCTTGGCTTAATG 60.429 47.826 15.92 11.31 46.15 1.90
532 533 2.757314 GCAAAGAGAGCCTTGGCTTAAT 59.243 45.455 15.92 5.23 46.15 1.40
533 534 2.162681 GCAAAGAGAGCCTTGGCTTAA 58.837 47.619 15.92 0.00 46.15 1.85
534 535 1.826385 GCAAAGAGAGCCTTGGCTTA 58.174 50.000 15.92 0.00 46.15 3.09
535 536 2.651071 GCAAAGAGAGCCTTGGCTT 58.349 52.632 15.92 5.89 46.15 4.35
536 537 4.412075 GCAAAGAGAGCCTTGGCT 57.588 55.556 14.69 14.69 46.15 4.75
549 550 6.915544 TGCATTACAATTGTTTCTTGCAAA 57.084 29.167 23.42 10.39 0.00 3.68
550 551 6.566187 GCATGCATTACAATTGTTTCTTGCAA 60.566 34.615 26.55 13.21 32.26 4.08
551 552 5.107026 GCATGCATTACAATTGTTTCTTGCA 60.107 36.000 25.72 25.72 0.00 4.08
552 553 5.318349 GCATGCATTACAATTGTTTCTTGC 58.682 37.500 17.78 18.85 0.00 4.01
553 554 5.444877 CGGCATGCATTACAATTGTTTCTTG 60.445 40.000 21.36 10.30 0.00 3.02
602 603 4.285260 ACCAGGTAAAACAAGTCCGTCTAT 59.715 41.667 0.00 0.00 0.00 1.98
663 670 4.101448 GCCGACCCACAGCTGGAT 62.101 66.667 19.93 0.00 40.55 3.41
742 758 1.267632 CGACTCCGAGTTCAGATCGAC 60.268 57.143 1.71 0.00 42.76 4.20
776 792 5.876460 AGCTATTTATAACGTTGGTTTCGGT 59.124 36.000 11.99 0.00 37.58 4.69
777 793 6.354039 AGCTATTTATAACGTTGGTTTCGG 57.646 37.500 11.99 0.00 37.58 4.30
864 902 0.318955 AAATCCGTGCTGCTTGTTGC 60.319 50.000 0.00 0.00 43.25 4.17
871 909 1.919918 GCATAAACAAATCCGTGCTGC 59.080 47.619 0.00 0.00 0.00 5.25
872 910 3.492421 AGCATAAACAAATCCGTGCTG 57.508 42.857 0.00 0.00 40.99 4.41
878 916 4.098416 GCGACTGAAGCATAAACAAATCC 58.902 43.478 0.00 0.00 34.19 3.01
883 921 1.075542 CGGCGACTGAAGCATAAACA 58.924 50.000 0.00 0.00 36.08 2.83
986 1030 3.265791 AGCTTCATCGTTCAGGATCAAC 58.734 45.455 0.00 0.00 0.00 3.18
1047 1103 1.327690 CCACCTCCGGTAGCAGCTTA 61.328 60.000 0.00 0.00 32.11 3.09
1071 1127 2.598099 TACGCGTCCCACAGGTCA 60.598 61.111 18.63 0.00 0.00 4.02
1182 1238 4.747529 TCGACCGCGACCTCGAGA 62.748 66.667 15.71 0.00 42.51 4.04
1185 1241 4.517703 GACTCGACCGCGACCTCG 62.518 72.222 8.23 11.21 42.51 4.63
1299 1355 4.537433 GGCCTCCGCAGCTCGATT 62.537 66.667 0.00 0.00 41.67 3.34
1367 1423 0.603569 AGTCTCGTCGCAGGATTTGT 59.396 50.000 0.00 0.00 0.00 2.83
1920 1982 1.739049 GAGAGTCTGGATGGCGAGG 59.261 63.158 0.00 0.00 0.00 4.63
1989 2051 1.095228 ATTCGGCCAAATCGACGCAT 61.095 50.000 2.24 0.00 36.30 4.73
2031 2093 0.885879 TGGACGATAAGACGCACACT 59.114 50.000 0.00 0.00 36.70 3.55
2043 2105 1.202615 CCAGAGACATGCATGGACGAT 60.203 52.381 29.41 9.11 34.60 3.73
2061 2123 1.514553 CTGCTCGAGCTGATCACCA 59.485 57.895 35.27 13.87 41.71 4.17
2205 2281 8.493547 CGAGACACACGATATATAGTTCAAGTA 58.506 37.037 0.00 0.00 0.00 2.24
2206 2282 7.353497 CGAGACACACGATATATAGTTCAAGT 58.647 38.462 0.00 0.00 0.00 3.16
2217 2299 1.389555 TGGAGCGAGACACACGATAT 58.610 50.000 0.00 0.00 0.00 1.63
2218 2300 1.170442 TTGGAGCGAGACACACGATA 58.830 50.000 0.00 0.00 0.00 2.92
2219 2301 0.532573 ATTGGAGCGAGACACACGAT 59.467 50.000 0.00 0.00 0.00 3.73
2221 2303 1.269166 GTATTGGAGCGAGACACACG 58.731 55.000 0.00 0.00 0.00 4.49
2222 2304 1.993370 GTGTATTGGAGCGAGACACAC 59.007 52.381 0.00 0.00 39.11 3.82
2223 2305 1.616374 TGTGTATTGGAGCGAGACACA 59.384 47.619 0.00 0.00 44.42 3.72
2225 2307 2.299013 AGTTGTGTATTGGAGCGAGACA 59.701 45.455 0.00 0.00 0.00 3.41
2226 2308 2.960819 AGTTGTGTATTGGAGCGAGAC 58.039 47.619 0.00 0.00 0.00 3.36
2227 2309 3.678056 AAGTTGTGTATTGGAGCGAGA 57.322 42.857 0.00 0.00 0.00 4.04
2229 2311 3.734463 TCAAAGTTGTGTATTGGAGCGA 58.266 40.909 0.00 0.00 0.00 4.93
2231 2313 5.182001 AGTGATCAAAGTTGTGTATTGGAGC 59.818 40.000 0.00 0.00 0.00 4.70
2232 2314 6.808008 AGTGATCAAAGTTGTGTATTGGAG 57.192 37.500 0.00 0.00 0.00 3.86
2233 2315 8.862325 ATAAGTGATCAAAGTTGTGTATTGGA 57.138 30.769 0.00 0.00 0.00 3.53
2270 2353 9.132923 TGGTTACAAAACTGAATAAACATGGTA 57.867 29.630 0.00 0.00 35.81 3.25
2272 2355 8.356657 TCTGGTTACAAAACTGAATAAACATGG 58.643 33.333 0.00 0.00 35.81 3.66
2273 2356 9.180678 GTCTGGTTACAAAACTGAATAAACATG 57.819 33.333 0.00 0.00 35.81 3.21
2274 2357 8.908903 TGTCTGGTTACAAAACTGAATAAACAT 58.091 29.630 0.00 0.00 35.81 2.71
2275 2358 8.282455 TGTCTGGTTACAAAACTGAATAAACA 57.718 30.769 0.00 0.00 35.81 2.83
2276 2359 9.575783 TTTGTCTGGTTACAAAACTGAATAAAC 57.424 29.630 0.00 0.00 44.23 2.01
2277 2360 9.796120 CTTTGTCTGGTTACAAAACTGAATAAA 57.204 29.630 4.00 0.00 45.88 1.40
2279 2362 8.514330 ACTTTGTCTGGTTACAAAACTGAATA 57.486 30.769 4.00 0.00 45.88 1.75
2280 2363 7.404671 ACTTTGTCTGGTTACAAAACTGAAT 57.595 32.000 4.00 0.00 45.88 2.57
2281 2364 6.827586 ACTTTGTCTGGTTACAAAACTGAA 57.172 33.333 4.00 0.00 45.88 3.02
2282 2365 6.827586 AACTTTGTCTGGTTACAAAACTGA 57.172 33.333 4.00 0.00 45.88 3.41
2317 2422 7.601856 TGATATTTTCAGCGAAAAATCACCTT 58.398 30.769 16.43 5.36 43.32 3.50
2330 2437 9.387123 GTAGATTTTCGGATTGATATTTTCAGC 57.613 33.333 0.00 0.00 35.27 4.26
2345 2455 6.036844 GCTTAGTAACTTGGGTAGATTTTCGG 59.963 42.308 0.00 0.00 0.00 4.30
2357 2467 5.934402 TTCTAGGGAGCTTAGTAACTTGG 57.066 43.478 0.00 0.00 0.00 3.61
2401 4443 2.801063 CATCAATGCCTTACAAAGCCG 58.199 47.619 0.00 0.00 0.00 5.52
2474 4516 2.952310 AGCAGAGCACGTATCACATCTA 59.048 45.455 0.00 0.00 0.00 1.98
2486 4528 6.148480 TCTCTGAAGAAAAATAAGCAGAGCAC 59.852 38.462 0.00 0.00 45.39 4.40
2487 4529 6.233434 TCTCTGAAGAAAAATAAGCAGAGCA 58.767 36.000 0.00 0.00 45.39 4.26
2529 4571 6.455113 CGGTGTAATTGACTCCATCTAAAACG 60.455 42.308 0.00 0.00 41.10 3.60


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.