Multiple sequence alignment - TraesCS6D01G334600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G334600 chr6D 100.000 4351 0 0 1 4351 436492931 436497281 0.000000e+00 8035.0
1 TraesCS6D01G334600 chr2D 97.926 3906 69 9 246 4142 616930534 616926632 0.000000e+00 6754.0
2 TraesCS6D01G334600 chr2D 97.201 3930 44 19 246 4145 316146950 316143057 0.000000e+00 6588.0
3 TraesCS6D01G334600 chr2D 90.281 1389 103 12 2687 4055 59648725 59650101 0.000000e+00 1788.0
4 TraesCS6D01G334600 chr2D 91.535 886 70 5 1672 2555 59647848 59648730 0.000000e+00 1216.0
5 TraesCS6D01G334600 chr2D 90.490 347 28 2 1287 1628 59647503 59647849 1.840000e-123 453.0
6 TraesCS6D01G334600 chr2D 86.246 349 41 5 246 588 10975752 10976099 5.310000e-99 372.0
7 TraesCS6D01G334600 chr2D 85.075 335 45 4 309 639 11214878 11215211 1.940000e-88 337.0
8 TraesCS6D01G334600 chr2D 83.841 328 42 7 3805 4122 520551589 520551263 7.070000e-78 302.0
9 TraesCS6D01G334600 chr2D 78.414 227 39 6 1219 1435 627366167 627366393 5.870000e-29 139.0
10 TraesCS6D01G334600 chr6B 93.641 3208 158 16 942 4124 55204208 55207394 0.000000e+00 4752.0
11 TraesCS6D01G334600 chr6B 96.133 181 6 1 763 943 55203991 55204170 1.180000e-75 294.0
12 TraesCS6D01G334600 chr6B 83.553 304 38 8 3743 4035 472715273 472714971 1.540000e-69 274.0
13 TraesCS6D01G334600 chr6B 88.106 227 26 1 2346 2571 75409132 75409358 7.170000e-68 268.0
14 TraesCS6D01G334600 chr6B 88.889 99 11 0 4026 4124 472714587 472714489 5.910000e-24 122.0
15 TraesCS6D01G334600 chr6B 87.692 65 8 0 4060 4124 663128182 663128118 4.670000e-10 76.8
16 TraesCS6D01G334600 chr3B 93.661 2524 129 11 942 3447 674481704 674479194 0.000000e+00 3746.0
17 TraesCS6D01G334600 chr3B 93.003 686 42 4 3443 4124 674478216 674477533 0.000000e+00 996.0
18 TraesCS6D01G334600 chr3B 85.354 396 42 8 3739 4124 534251102 534251491 3.150000e-106 396.0
19 TraesCS6D01G334600 chr3B 95.580 181 8 0 763 943 674481924 674481744 1.530000e-74 291.0
20 TraesCS6D01G334600 chr5D 89.065 1390 119 12 2687 4055 376572730 376574107 0.000000e+00 1694.0
21 TraesCS6D01G334600 chr5D 91.196 886 73 5 1672 2555 376571853 376572735 0.000000e+00 1199.0
22 TraesCS6D01G334600 chr5D 91.066 347 26 2 1287 1628 376571508 376571854 8.520000e-127 464.0
23 TraesCS6D01G334600 chr5D 98.381 247 4 0 1 247 244340555 244340801 6.680000e-118 435.0
24 TraesCS6D01G334600 chr5D 97.244 254 7 0 1 254 91861954 91861701 8.640000e-117 431.0
25 TraesCS6D01G334600 chr5D 97.976 247 5 0 1 247 272384930 272385176 3.110000e-116 429.0
26 TraesCS6D01G334600 chr1D 85.073 1159 131 17 2346 3487 189816643 189815510 0.000000e+00 1144.0
27 TraesCS6D01G334600 chr1D 97.233 253 7 0 1 253 52675977 52675725 3.110000e-116 429.0
28 TraesCS6D01G334600 chr1D 97.976 247 5 0 1 247 446553249 446553495 3.110000e-116 429.0
29 TraesCS6D01G334600 chr1D 97.976 247 5 0 1 247 470144384 470144630 3.110000e-116 429.0
30 TraesCS6D01G334600 chr4D 98.381 247 4 0 1 247 25445445 25445691 6.680000e-118 435.0
31 TraesCS6D01G334600 chr3D 98.381 247 4 0 1 247 499511135 499511381 6.680000e-118 435.0
32 TraesCS6D01G334600 chr3D 97.233 253 7 0 1 253 5297144 5296892 3.110000e-116 429.0
33 TraesCS6D01G334600 chr7D 85.242 393 56 2 1832 2222 402554964 402554572 1.880000e-108 403.0
34 TraesCS6D01G334600 chr7D 95.370 216 6 2 4137 4351 17852788 17852576 1.500000e-89 340.0
35 TraesCS6D01G334600 chr7D 89.231 65 3 1 4060 4124 556287857 556287917 1.300000e-10 78.7
36 TraesCS6D01G334600 chr5A 97.685 216 3 2 4137 4351 145745023 145744809 1.910000e-98 370.0
37 TraesCS6D01G334600 chr5A 95.349 215 10 0 4137 4351 519569222 519569008 4.170000e-90 342.0
38 TraesCS6D01G334600 chr5A 95.349 215 10 0 4137 4351 575089073 575088859 4.170000e-90 342.0
39 TraesCS6D01G334600 chr4A 95.775 213 9 0 4137 4349 171892681 171892893 1.160000e-90 344.0
40 TraesCS6D01G334600 chr4A 95.349 215 10 0 4137 4351 282690929 282691143 4.170000e-90 342.0
41 TraesCS6D01G334600 chr4A 94.884 215 11 0 4137 4351 275748875 275748661 1.940000e-88 337.0
42 TraesCS6D01G334600 chr4A 94.860 214 11 0 4137 4350 300288453 300288666 6.970000e-88 335.0
43 TraesCS6D01G334600 chr4A 94.884 215 10 1 4137 4351 346533770 346533983 6.970000e-88 335.0
44 TraesCS6D01G334600 chr2A 83.523 352 47 5 246 588 11638260 11638609 7.020000e-83 318.0
45 TraesCS6D01G334600 chr6A 82.692 104 11 6 2126 2226 286424740 286424839 7.750000e-13 86.1
46 TraesCS6D01G334600 chr4B 82.105 95 16 1 2133 2226 497107023 497106929 3.610000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G334600 chr6D 436492931 436497281 4350 False 8035.000000 8035 100.000000 1 4351 1 chr6D.!!$F1 4350
1 TraesCS6D01G334600 chr2D 616926632 616930534 3902 True 6754.000000 6754 97.926000 246 4142 1 chr2D.!!$R3 3896
2 TraesCS6D01G334600 chr2D 316143057 316146950 3893 True 6588.000000 6588 97.201000 246 4145 1 chr2D.!!$R1 3899
3 TraesCS6D01G334600 chr2D 59647503 59650101 2598 False 1152.333333 1788 90.768667 1287 4055 3 chr2D.!!$F4 2768
4 TraesCS6D01G334600 chr6B 55203991 55207394 3403 False 2523.000000 4752 94.887000 763 4124 2 chr6B.!!$F2 3361
5 TraesCS6D01G334600 chr3B 674477533 674481924 4391 True 1677.666667 3746 94.081333 763 4124 3 chr3B.!!$R1 3361
6 TraesCS6D01G334600 chr5D 376571508 376574107 2599 False 1119.000000 1694 90.442333 1287 4055 3 chr5D.!!$F3 2768
7 TraesCS6D01G334600 chr1D 189815510 189816643 1133 True 1144.000000 1144 85.073000 2346 3487 1 chr1D.!!$R2 1141

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
101 102 0.028637 GTCGGATCGGGAAGACGTAC 59.971 60.0 0.00 0.00 34.94 3.67 F
104 105 0.028637 GGATCGGGAAGACGTACGAC 59.971 60.0 24.41 16.77 38.24 4.34 F
119 120 0.038892 ACGACTACATCAACCGCGTT 60.039 50.0 4.92 0.00 0.00 4.84 F
188 189 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.0 3.79 3.79 38.76 3.96 F
203 204 1.018910 TGCATCACCATGATCTTGCG 58.981 50.0 3.07 0.30 34.28 4.85 F
204 205 1.019673 GCATCACCATGATCTTGCGT 58.980 50.0 3.07 0.87 34.28 5.24 F
2369 2466 0.249398 AGTACCGTTGATCTGGGCAC 59.751 55.0 0.00 0.00 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2030 2118 1.402968 CAACAAATCCCTGGATGAGCG 59.597 52.381 0.0 0.0 34.70 5.03 R
2091 2179 2.115910 CAAGCAGACCCCAGCCAA 59.884 61.111 0.0 0.0 0.00 4.52 R
2184 2279 3.007614 CCTAGAAAAACACCGAAGAGGGA 59.992 47.826 0.0 0.0 46.96 4.20 R
2333 2430 4.421948 GGTACTGTAAGAACATCTCCACG 58.578 47.826 0.0 0.0 37.43 4.94 R
2369 2466 1.820010 GAAAAGCTTGGGTGCCTGGG 61.820 60.000 0.0 0.0 0.00 4.45 R
2432 2530 1.164411 GGTCATTGTTCATCGCACCA 58.836 50.000 0.0 0.0 0.00 4.17 R
4185 5320 0.033109 AGGGCCTTCCTGTAATTGGC 60.033 55.000 0.0 0.0 46.07 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.207354 TCGGCTGGATCGGAGTTC 58.793 61.111 0.00 0.00 0.00 3.01
18 19 2.278857 CGGCTGGATCGGAGTTCG 60.279 66.667 0.00 0.00 40.90 3.95
26 27 2.033141 TCGGAGTTCGAGGGACGT 59.967 61.111 0.00 0.00 43.74 4.34
27 28 2.037136 TCGGAGTTCGAGGGACGTC 61.037 63.158 7.13 7.13 43.74 4.34
28 29 2.330372 CGGAGTTCGAGGGACGTCA 61.330 63.158 18.91 0.00 42.43 4.35
29 30 1.654954 CGGAGTTCGAGGGACGTCAT 61.655 60.000 18.91 4.87 42.43 3.06
30 31 0.100861 GGAGTTCGAGGGACGTCATC 59.899 60.000 18.91 13.48 43.13 2.92
31 32 0.248134 GAGTTCGAGGGACGTCATCG 60.248 60.000 27.08 27.08 43.13 3.84
32 33 1.226603 GTTCGAGGGACGTCATCGG 60.227 63.158 30.05 17.92 43.13 4.18
33 34 2.412323 TTCGAGGGACGTCATCGGG 61.412 63.158 30.05 14.93 43.13 5.14
34 35 4.570663 CGAGGGACGTCATCGGGC 62.571 72.222 25.96 6.61 41.85 6.13
35 36 3.148279 GAGGGACGTCATCGGGCT 61.148 66.667 18.91 0.00 41.85 5.19
36 37 3.432051 GAGGGACGTCATCGGGCTG 62.432 68.421 18.91 0.00 41.85 4.85
37 38 3.458163 GGGACGTCATCGGGCTGA 61.458 66.667 18.91 0.00 41.85 4.26
38 39 2.577059 GGACGTCATCGGGCTGAA 59.423 61.111 18.91 0.00 41.85 3.02
39 40 1.810030 GGACGTCATCGGGCTGAAC 60.810 63.158 18.91 0.00 41.85 3.18
40 41 2.126071 ACGTCATCGGGCTGAACG 60.126 61.111 16.73 16.73 41.85 3.95
41 42 2.126071 CGTCATCGGGCTGAACGT 60.126 61.111 11.46 0.00 0.00 3.99
42 43 2.444624 CGTCATCGGGCTGAACGTG 61.445 63.158 11.46 1.10 0.00 4.49
43 44 1.374252 GTCATCGGGCTGAACGTGT 60.374 57.895 0.00 0.00 0.00 4.49
44 45 1.374125 TCATCGGGCTGAACGTGTG 60.374 57.895 0.00 0.00 0.00 3.82
45 46 2.742372 ATCGGGCTGAACGTGTGC 60.742 61.111 0.00 0.00 0.00 4.57
46 47 3.240134 ATCGGGCTGAACGTGTGCT 62.240 57.895 0.00 0.00 0.00 4.40
47 48 3.716006 CGGGCTGAACGTGTGCTG 61.716 66.667 0.00 0.00 0.00 4.41
48 49 2.280797 GGGCTGAACGTGTGCTGA 60.281 61.111 0.00 0.00 0.00 4.26
49 50 1.891919 GGGCTGAACGTGTGCTGAA 60.892 57.895 0.00 0.00 0.00 3.02
50 51 1.279840 GGCTGAACGTGTGCTGAAC 59.720 57.895 0.00 0.00 0.00 3.18
51 52 1.160329 GGCTGAACGTGTGCTGAACT 61.160 55.000 0.00 0.00 0.00 3.01
52 53 0.233332 GCTGAACGTGTGCTGAACTC 59.767 55.000 0.00 0.00 0.00 3.01
56 57 3.848142 CGTGTGCTGAACTCGGAG 58.152 61.111 2.83 2.83 41.05 4.63
57 58 1.734477 CGTGTGCTGAACTCGGAGG 60.734 63.158 10.23 0.00 41.05 4.30
58 59 1.367840 GTGTGCTGAACTCGGAGGT 59.632 57.895 10.23 1.51 0.00 3.85
59 60 0.946221 GTGTGCTGAACTCGGAGGTG 60.946 60.000 10.23 0.00 0.00 4.00
60 61 1.367840 GTGCTGAACTCGGAGGTGT 59.632 57.895 10.23 0.00 0.00 4.16
61 62 0.667792 GTGCTGAACTCGGAGGTGTC 60.668 60.000 10.23 4.50 0.00 3.67
62 63 1.444553 GCTGAACTCGGAGGTGTCG 60.445 63.158 10.23 0.00 0.00 4.35
63 64 1.957562 CTGAACTCGGAGGTGTCGT 59.042 57.895 10.23 0.00 0.00 4.34
64 65 0.387367 CTGAACTCGGAGGTGTCGTG 60.387 60.000 10.23 0.00 0.00 4.35
65 66 1.733399 GAACTCGGAGGTGTCGTGC 60.733 63.158 10.23 0.00 0.00 5.34
66 67 3.553437 AACTCGGAGGTGTCGTGCG 62.553 63.158 10.23 0.00 34.68 5.34
67 68 4.039357 CTCGGAGGTGTCGTGCGT 62.039 66.667 0.00 0.00 34.93 5.24
68 69 3.553437 CTCGGAGGTGTCGTGCGTT 62.553 63.158 0.00 0.00 34.93 4.84
69 70 3.103911 CGGAGGTGTCGTGCGTTC 61.104 66.667 0.00 0.00 0.00 3.95
70 71 3.103911 GGAGGTGTCGTGCGTTCG 61.104 66.667 0.00 0.00 0.00 3.95
71 72 3.103911 GAGGTGTCGTGCGTTCGG 61.104 66.667 2.16 0.00 0.00 4.30
72 73 3.836176 GAGGTGTCGTGCGTTCGGT 62.836 63.158 2.16 0.00 0.00 4.69
73 74 2.050168 GGTGTCGTGCGTTCGGTA 60.050 61.111 2.16 0.00 0.00 4.02
74 75 2.367344 GGTGTCGTGCGTTCGGTAC 61.367 63.158 2.16 0.00 0.00 3.34
75 76 1.370900 GTGTCGTGCGTTCGGTACT 60.371 57.895 0.00 0.00 0.00 2.73
76 77 0.936297 GTGTCGTGCGTTCGGTACTT 60.936 55.000 0.00 0.00 0.00 2.24
77 78 0.935831 TGTCGTGCGTTCGGTACTTG 60.936 55.000 0.00 0.00 0.00 3.16
78 79 0.661187 GTCGTGCGTTCGGTACTTGA 60.661 55.000 0.00 0.00 0.00 3.02
79 80 0.241749 TCGTGCGTTCGGTACTTGAT 59.758 50.000 0.00 0.00 0.00 2.57
80 81 0.638746 CGTGCGTTCGGTACTTGATC 59.361 55.000 0.00 0.00 0.00 2.92
81 82 0.638746 GTGCGTTCGGTACTTGATCG 59.361 55.000 11.98 11.98 0.00 3.69
82 83 0.457166 TGCGTTCGGTACTTGATCGG 60.457 55.000 15.69 0.00 30.29 4.18
83 84 0.457337 GCGTTCGGTACTTGATCGGT 60.457 55.000 15.69 0.00 30.29 4.69
84 85 1.542544 CGTTCGGTACTTGATCGGTC 58.457 55.000 9.70 0.00 30.29 4.79
85 86 1.542544 GTTCGGTACTTGATCGGTCG 58.457 55.000 0.00 0.00 30.29 4.79
86 87 0.452987 TTCGGTACTTGATCGGTCGG 59.547 55.000 0.00 0.00 30.29 4.79
87 88 0.392863 TCGGTACTTGATCGGTCGGA 60.393 55.000 0.00 0.00 30.29 4.55
88 89 0.666913 CGGTACTTGATCGGTCGGAT 59.333 55.000 0.00 0.00 38.35 4.18
94 95 3.440151 GATCGGTCGGATCGGGAA 58.560 61.111 11.21 0.00 42.02 3.97
95 96 1.286260 GATCGGTCGGATCGGGAAG 59.714 63.158 11.21 0.00 42.02 3.46
96 97 1.152819 ATCGGTCGGATCGGGAAGA 60.153 57.895 11.21 0.00 0.00 2.87
97 98 1.453762 ATCGGTCGGATCGGGAAGAC 61.454 60.000 11.21 0.00 0.00 3.01
98 99 2.412112 GGTCGGATCGGGAAGACG 59.588 66.667 0.00 0.00 34.68 4.18
99 100 2.413142 GGTCGGATCGGGAAGACGT 61.413 63.158 0.00 0.00 34.68 4.34
100 101 1.097547 GGTCGGATCGGGAAGACGTA 61.098 60.000 0.00 0.00 34.68 3.57
101 102 0.028637 GTCGGATCGGGAAGACGTAC 59.971 60.000 0.00 0.00 34.94 3.67
102 103 1.010350 CGGATCGGGAAGACGTACG 60.010 63.158 15.01 15.01 34.94 3.67
103 104 1.431488 CGGATCGGGAAGACGTACGA 61.431 60.000 24.41 0.00 39.85 3.43
104 105 0.028637 GGATCGGGAAGACGTACGAC 59.971 60.000 24.41 16.77 38.24 4.34
105 106 1.012841 GATCGGGAAGACGTACGACT 58.987 55.000 24.41 19.11 38.24 4.18
106 107 2.205074 GATCGGGAAGACGTACGACTA 58.795 52.381 24.41 5.92 38.24 2.59
107 108 1.359848 TCGGGAAGACGTACGACTAC 58.640 55.000 24.41 16.64 34.94 2.73
108 109 1.078709 CGGGAAGACGTACGACTACA 58.921 55.000 24.41 0.00 0.00 2.74
109 110 1.667724 CGGGAAGACGTACGACTACAT 59.332 52.381 24.41 6.17 0.00 2.29
110 111 2.286067 CGGGAAGACGTACGACTACATC 60.286 54.545 24.41 15.00 0.00 3.06
111 112 2.679837 GGGAAGACGTACGACTACATCA 59.320 50.000 24.41 0.00 0.00 3.07
112 113 3.127548 GGGAAGACGTACGACTACATCAA 59.872 47.826 24.41 0.00 0.00 2.57
113 114 4.094212 GGAAGACGTACGACTACATCAAC 58.906 47.826 24.41 5.85 0.00 3.18
114 115 3.754188 AGACGTACGACTACATCAACC 57.246 47.619 24.41 0.00 0.00 3.77
115 116 2.094894 AGACGTACGACTACATCAACCG 59.905 50.000 24.41 0.00 0.00 4.44
116 117 1.186030 CGTACGACTACATCAACCGC 58.814 55.000 10.44 0.00 0.00 5.68
117 118 1.186030 GTACGACTACATCAACCGCG 58.814 55.000 0.00 0.00 0.00 6.46
118 119 0.804364 TACGACTACATCAACCGCGT 59.196 50.000 4.92 0.00 0.00 6.01
119 120 0.038892 ACGACTACATCAACCGCGTT 60.039 50.000 4.92 0.00 0.00 4.84
120 121 0.365523 CGACTACATCAACCGCGTTG 59.634 55.000 4.92 10.14 43.99 4.10
121 122 1.425412 GACTACATCAACCGCGTTGT 58.575 50.000 16.97 9.99 43.23 3.32
122 123 1.126113 GACTACATCAACCGCGTTGTG 59.874 52.381 16.97 15.92 43.23 3.33
123 124 0.179225 CTACATCAACCGCGTTGTGC 60.179 55.000 16.97 0.00 43.23 4.57
124 125 0.601576 TACATCAACCGCGTTGTGCT 60.602 50.000 16.97 6.88 43.23 4.40
125 126 0.601576 ACATCAACCGCGTTGTGCTA 60.602 50.000 16.97 3.28 43.23 3.49
126 127 0.515127 CATCAACCGCGTTGTGCTAA 59.485 50.000 16.97 2.99 43.23 3.09
127 128 0.515564 ATCAACCGCGTTGTGCTAAC 59.484 50.000 16.97 0.00 43.23 2.34
128 129 1.438059 CAACCGCGTTGTGCTAACG 60.438 57.895 18.25 18.25 45.56 3.18
134 135 1.129809 CGTTGTGCTAACGCTTCCG 59.870 57.895 12.46 0.00 36.82 4.30
135 136 1.154469 GTTGTGCTAACGCTTCCGC 60.154 57.895 0.00 0.00 38.22 5.54
136 137 1.301401 TTGTGCTAACGCTTCCGCT 60.301 52.632 0.00 0.00 38.22 5.52
137 138 0.882927 TTGTGCTAACGCTTCCGCTT 60.883 50.000 0.00 0.00 38.22 4.68
138 139 0.882927 TGTGCTAACGCTTCCGCTTT 60.883 50.000 0.00 0.00 38.22 3.51
139 140 0.179222 GTGCTAACGCTTCCGCTTTC 60.179 55.000 0.00 0.00 38.22 2.62
140 141 1.058903 GCTAACGCTTCCGCTTTCG 59.941 57.895 0.00 0.00 38.22 3.46
158 159 2.101700 GGTCTACGAGGGTACGTGG 58.898 63.158 0.00 0.00 46.02 4.94
160 161 3.159298 TCTACGAGGGTACGTGGAC 57.841 57.895 0.00 0.00 45.53 4.02
161 162 0.324614 TCTACGAGGGTACGTGGACA 59.675 55.000 0.00 0.00 45.53 4.02
162 163 1.167851 CTACGAGGGTACGTGGACAA 58.832 55.000 0.00 0.00 44.98 3.18
163 164 0.881118 TACGAGGGTACGTGGACAAC 59.119 55.000 0.00 0.00 46.02 3.32
164 165 1.108727 ACGAGGGTACGTGGACAACA 61.109 55.000 0.00 0.00 44.84 3.33
165 166 0.665369 CGAGGGTACGTGGACAACAC 60.665 60.000 0.00 0.00 46.78 3.32
173 174 2.453242 GTGGACAACACTCTCCCCT 58.547 57.895 0.00 0.00 46.72 4.79
174 175 0.321996 GTGGACAACACTCTCCCCTC 59.678 60.000 0.00 0.00 46.72 4.30
175 176 0.191064 TGGACAACACTCTCCCCTCT 59.809 55.000 0.00 0.00 0.00 3.69
176 177 0.899019 GGACAACACTCTCCCCTCTC 59.101 60.000 0.00 0.00 0.00 3.20
177 178 0.528470 GACAACACTCTCCCCTCTCG 59.472 60.000 0.00 0.00 0.00 4.04
178 179 0.178958 ACAACACTCTCCCCTCTCGT 60.179 55.000 0.00 0.00 0.00 4.18
179 180 0.969894 CAACACTCTCCCCTCTCGTT 59.030 55.000 0.00 0.00 0.00 3.85
180 181 0.969894 AACACTCTCCCCTCTCGTTG 59.030 55.000 0.00 0.00 0.00 4.10
181 182 1.216710 CACTCTCCCCTCTCGTTGC 59.783 63.158 0.00 0.00 0.00 4.17
182 183 1.077625 ACTCTCCCCTCTCGTTGCT 59.922 57.895 0.00 0.00 0.00 3.91
183 184 0.331954 ACTCTCCCCTCTCGTTGCTA 59.668 55.000 0.00 0.00 0.00 3.49
184 185 1.063567 ACTCTCCCCTCTCGTTGCTAT 60.064 52.381 0.00 0.00 0.00 2.97
185 186 1.339610 CTCTCCCCTCTCGTTGCTATG 59.660 57.143 0.00 0.00 0.00 2.23
186 187 0.249657 CTCCCCTCTCGTTGCTATGC 60.250 60.000 0.00 0.00 0.00 3.14
187 188 0.975556 TCCCCTCTCGTTGCTATGCA 60.976 55.000 0.00 0.00 36.47 3.96
188 189 0.107456 CCCCTCTCGTTGCTATGCAT 59.893 55.000 3.79 3.79 38.76 3.96
189 190 1.506493 CCCTCTCGTTGCTATGCATC 58.494 55.000 0.19 0.00 38.76 3.91
190 191 1.202568 CCCTCTCGTTGCTATGCATCA 60.203 52.381 0.19 0.00 38.76 3.07
191 192 1.863454 CCTCTCGTTGCTATGCATCAC 59.137 52.381 0.19 0.00 38.76 3.06
192 193 1.863454 CTCTCGTTGCTATGCATCACC 59.137 52.381 0.19 0.00 38.76 4.02
193 194 1.206849 TCTCGTTGCTATGCATCACCA 59.793 47.619 0.19 0.00 38.76 4.17
194 195 2.158914 TCTCGTTGCTATGCATCACCAT 60.159 45.455 0.19 0.00 38.76 3.55
195 196 1.941975 TCGTTGCTATGCATCACCATG 59.058 47.619 0.19 0.00 38.76 3.66
196 197 1.941975 CGTTGCTATGCATCACCATGA 59.058 47.619 0.19 0.00 38.76 3.07
197 198 2.551032 CGTTGCTATGCATCACCATGAT 59.449 45.455 0.19 0.00 38.76 2.45
198 199 3.364664 CGTTGCTATGCATCACCATGATC 60.365 47.826 0.19 0.00 38.76 2.92
199 200 3.782656 TGCTATGCATCACCATGATCT 57.217 42.857 0.19 0.00 34.28 2.75
200 201 4.094830 TGCTATGCATCACCATGATCTT 57.905 40.909 0.19 0.00 34.28 2.40
201 202 3.818773 TGCTATGCATCACCATGATCTTG 59.181 43.478 0.19 1.60 34.28 3.02
202 203 3.366070 GCTATGCATCACCATGATCTTGC 60.366 47.826 0.19 0.00 34.28 4.01
203 204 1.018910 TGCATCACCATGATCTTGCG 58.981 50.000 3.07 0.30 34.28 4.85
204 205 1.019673 GCATCACCATGATCTTGCGT 58.980 50.000 3.07 0.87 34.28 5.24
205 206 1.268386 GCATCACCATGATCTTGCGTG 60.268 52.381 17.02 17.02 34.28 5.34
206 207 2.011947 CATCACCATGATCTTGCGTGT 58.988 47.619 19.89 6.63 34.28 4.49
207 208 1.441738 TCACCATGATCTTGCGTGTG 58.558 50.000 19.89 14.96 0.00 3.82
208 209 1.159285 CACCATGATCTTGCGTGTGT 58.841 50.000 15.81 3.20 0.00 3.72
209 210 1.135888 CACCATGATCTTGCGTGTGTG 60.136 52.381 15.81 9.68 0.00 3.82
210 211 1.159285 CCATGATCTTGCGTGTGTGT 58.841 50.000 3.07 0.00 0.00 3.72
211 212 2.289382 ACCATGATCTTGCGTGTGTGTA 60.289 45.455 3.07 0.00 0.00 2.90
212 213 2.349580 CCATGATCTTGCGTGTGTGTAG 59.650 50.000 3.07 0.00 0.00 2.74
213 214 2.078849 TGATCTTGCGTGTGTGTAGG 57.921 50.000 0.00 0.00 0.00 3.18
214 215 1.616374 TGATCTTGCGTGTGTGTAGGA 59.384 47.619 0.00 0.00 0.00 2.94
215 216 2.036604 TGATCTTGCGTGTGTGTAGGAA 59.963 45.455 0.00 0.00 0.00 3.36
216 217 2.831685 TCTTGCGTGTGTGTAGGAAT 57.168 45.000 0.00 0.00 0.00 3.01
217 218 3.120321 TCTTGCGTGTGTGTAGGAATT 57.880 42.857 0.00 0.00 0.00 2.17
218 219 3.472652 TCTTGCGTGTGTGTAGGAATTT 58.527 40.909 0.00 0.00 0.00 1.82
219 220 3.880490 TCTTGCGTGTGTGTAGGAATTTT 59.120 39.130 0.00 0.00 0.00 1.82
220 221 4.336993 TCTTGCGTGTGTGTAGGAATTTTT 59.663 37.500 0.00 0.00 0.00 1.94
242 243 7.762588 TTTTTGAAATTACTATGTTCCCCGA 57.237 32.000 0.00 0.00 0.00 5.14
243 244 6.746745 TTTGAAATTACTATGTTCCCCGAC 57.253 37.500 0.00 0.00 0.00 4.79
244 245 5.423704 TGAAATTACTATGTTCCCCGACA 57.576 39.130 0.00 0.00 0.00 4.35
404 405 4.582869 ACTAATCACAGATGAAGCTTGCA 58.417 39.130 2.10 1.94 38.69 4.08
495 497 3.891366 CCCAGGAAAGGCATATTTACCAG 59.109 47.826 0.00 0.00 0.00 4.00
533 535 7.438160 GCCTGGTAATATTTTGCTGGATAAAAC 59.562 37.037 0.00 0.00 30.64 2.43
591 593 8.567948 TCAAGACTTGTTGATTCAATAGAAACC 58.432 33.333 14.75 0.00 37.29 3.27
797 800 5.135383 TCTCCTGCCAAAATAATGAGATGG 58.865 41.667 0.00 0.00 0.00 3.51
1550 1638 5.503002 TCCCCTTGGTTATTTACTTACTGC 58.497 41.667 0.00 0.00 0.00 4.40
1557 1645 5.180492 TGGTTATTTACTTACTGCACTGTGC 59.820 40.000 25.15 25.15 45.29 4.57
1579 1667 4.384056 CCAGATGGCAATAAGTAGGTGAG 58.616 47.826 0.00 0.00 0.00 3.51
1813 1901 2.129607 GCATGAATATTTGCCTTGCCG 58.870 47.619 0.00 0.00 32.66 5.69
2030 2118 1.798223 TCTCGTTTGTGCTGTACATGC 59.202 47.619 0.00 3.09 39.48 4.06
2091 2179 3.299503 AGGTTTGCTGGTTGATTTGTCT 58.700 40.909 0.00 0.00 0.00 3.41
2184 2279 2.355209 GGTGATTCTTTCCTCTCGCCTT 60.355 50.000 0.00 0.00 35.79 4.35
2333 2430 4.552184 GCTTCCGCGAATTTAGTCCATAAC 60.552 45.833 8.23 0.00 0.00 1.89
2369 2466 0.249398 AGTACCGTTGATCTGGGCAC 59.751 55.000 0.00 0.00 0.00 5.01
2432 2530 1.484240 CGGAGGGAGCTCTTCTTCATT 59.516 52.381 14.64 0.00 0.00 2.57
2496 2594 0.042731 AGCTAGCAAGGTAGACCCCA 59.957 55.000 18.83 0.00 36.42 4.96
3436 3566 4.350368 AAAAAGGAATTTGCGGGTCAAT 57.650 36.364 0.00 0.00 34.12 2.57
3499 4612 3.371285 CGGATCTGCATATGATCAAGCTG 59.629 47.826 6.97 15.28 41.35 4.24
3681 4804 3.510388 TGACTTCCTGCTGTATCTTCG 57.490 47.619 0.00 0.00 0.00 3.79
3775 4898 5.209818 TCAACTCCTGACGTCACTATTTT 57.790 39.130 15.76 1.52 0.00 1.82
4002 5128 8.752187 AGTTACTTCATACGTTAGTCCCATTTA 58.248 33.333 0.00 0.00 0.00 1.40
4145 5280 5.539048 CCTACCCGATCTAGTTGTATTTGG 58.461 45.833 0.00 0.00 0.00 3.28
4146 5281 5.070047 CCTACCCGATCTAGTTGTATTTGGT 59.930 44.000 0.00 0.00 0.00 3.67
4147 5282 5.431179 ACCCGATCTAGTTGTATTTGGTT 57.569 39.130 0.00 0.00 0.00 3.67
4148 5283 6.549433 ACCCGATCTAGTTGTATTTGGTTA 57.451 37.500 0.00 0.00 0.00 2.85
4149 5284 6.579865 ACCCGATCTAGTTGTATTTGGTTAG 58.420 40.000 0.00 0.00 0.00 2.34
4150 5285 5.989777 CCCGATCTAGTTGTATTTGGTTAGG 59.010 44.000 0.00 0.00 0.00 2.69
4151 5286 6.183360 CCCGATCTAGTTGTATTTGGTTAGGA 60.183 42.308 0.00 0.00 0.00 2.94
4152 5287 7.442656 CCGATCTAGTTGTATTTGGTTAGGAT 58.557 38.462 0.00 0.00 0.00 3.24
4153 5288 7.599245 CCGATCTAGTTGTATTTGGTTAGGATC 59.401 40.741 0.00 0.00 0.00 3.36
4154 5289 7.599245 CGATCTAGTTGTATTTGGTTAGGATCC 59.401 40.741 2.48 2.48 0.00 3.36
4155 5290 7.743116 TCTAGTTGTATTTGGTTAGGATCCA 57.257 36.000 15.82 0.00 0.00 3.41
4156 5291 8.153221 TCTAGTTGTATTTGGTTAGGATCCAA 57.847 34.615 15.82 3.42 42.29 3.53
4157 5292 8.265055 TCTAGTTGTATTTGGTTAGGATCCAAG 58.735 37.037 15.82 0.00 44.26 3.61
4158 5293 5.652452 AGTTGTATTTGGTTAGGATCCAAGC 59.348 40.000 15.82 15.39 44.26 4.01
4159 5294 5.186256 TGTATTTGGTTAGGATCCAAGCA 57.814 39.130 15.82 17.66 44.26 3.91
4160 5295 5.192927 TGTATTTGGTTAGGATCCAAGCAG 58.807 41.667 15.82 0.00 44.26 4.24
4161 5296 2.806945 TTGGTTAGGATCCAAGCAGG 57.193 50.000 15.82 0.00 39.62 4.85
4162 5297 0.918983 TGGTTAGGATCCAAGCAGGG 59.081 55.000 15.82 0.00 38.24 4.45
4163 5298 0.466372 GGTTAGGATCCAAGCAGGGC 60.466 60.000 15.82 0.00 38.24 5.19
4164 5299 0.466372 GTTAGGATCCAAGCAGGGCC 60.466 60.000 15.82 0.00 38.24 5.80
4165 5300 1.983119 TTAGGATCCAAGCAGGGCCG 61.983 60.000 15.82 0.00 37.33 6.13
4166 5301 4.883354 GGATCCAAGCAGGGCCGG 62.883 72.222 6.95 0.00 38.24 6.13
4167 5302 3.797353 GATCCAAGCAGGGCCGGA 61.797 66.667 5.05 3.27 38.24 5.14
4168 5303 3.099170 ATCCAAGCAGGGCCGGAT 61.099 61.111 5.05 5.92 36.79 4.18
4169 5304 1.768684 GATCCAAGCAGGGCCGGATA 61.769 60.000 5.05 0.00 40.12 2.59
4170 5305 1.772819 ATCCAAGCAGGGCCGGATAG 61.773 60.000 5.05 0.00 38.86 2.08
4171 5306 2.592861 CAAGCAGGGCCGGATAGC 60.593 66.667 5.05 2.47 0.00 2.97
4172 5307 4.241555 AAGCAGGGCCGGATAGCG 62.242 66.667 5.05 0.00 0.00 4.26
4192 5327 2.124901 CGCCCTCCACGCCAATTA 60.125 61.111 0.00 0.00 0.00 1.40
4193 5328 2.469516 CGCCCTCCACGCCAATTAC 61.470 63.158 0.00 0.00 0.00 1.89
4194 5329 1.377987 GCCCTCCACGCCAATTACA 60.378 57.895 0.00 0.00 0.00 2.41
4195 5330 1.376609 GCCCTCCACGCCAATTACAG 61.377 60.000 0.00 0.00 0.00 2.74
4196 5331 0.748005 CCCTCCACGCCAATTACAGG 60.748 60.000 0.00 0.00 0.00 4.00
4197 5332 0.251916 CCTCCACGCCAATTACAGGA 59.748 55.000 0.00 0.00 0.00 3.86
4198 5333 1.339631 CCTCCACGCCAATTACAGGAA 60.340 52.381 0.00 0.00 0.00 3.36
4199 5334 2.009774 CTCCACGCCAATTACAGGAAG 58.990 52.381 0.00 0.00 0.00 3.46
4200 5335 1.094785 CCACGCCAATTACAGGAAGG 58.905 55.000 0.00 0.00 0.00 3.46
4201 5336 0.451783 CACGCCAATTACAGGAAGGC 59.548 55.000 0.00 0.00 41.86 4.35
4202 5337 0.679960 ACGCCAATTACAGGAAGGCC 60.680 55.000 0.00 0.00 42.28 5.19
4203 5338 1.384222 CGCCAATTACAGGAAGGCCC 61.384 60.000 0.00 0.00 42.28 5.80
4205 5340 2.024306 GCCAATTACAGGAAGGCCCTC 61.024 57.143 0.00 0.00 45.60 4.30
4206 5341 1.410224 CCAATTACAGGAAGGCCCTCC 60.410 57.143 13.04 13.04 45.60 4.30
4207 5342 1.284785 CAATTACAGGAAGGCCCTCCA 59.715 52.381 22.80 1.53 45.60 3.86
4208 5343 0.919710 ATTACAGGAAGGCCCTCCAC 59.080 55.000 22.80 0.00 45.60 4.02
4209 5344 0.474854 TTACAGGAAGGCCCTCCACA 60.475 55.000 22.80 3.87 45.60 4.17
4210 5345 1.198759 TACAGGAAGGCCCTCCACAC 61.199 60.000 22.80 0.00 45.60 3.82
4211 5346 2.121963 AGGAAGGCCCTCCACACA 60.122 61.111 22.80 0.00 43.31 3.72
4212 5347 1.774217 AGGAAGGCCCTCCACACAA 60.774 57.895 22.80 0.00 43.31 3.33
4213 5348 1.152830 GGAAGGCCCTCCACACAAA 59.847 57.895 16.11 0.00 35.36 2.83
4214 5349 0.251787 GGAAGGCCCTCCACACAAAT 60.252 55.000 16.11 0.00 35.36 2.32
4215 5350 1.005450 GGAAGGCCCTCCACACAAATA 59.995 52.381 16.11 0.00 35.36 1.40
4216 5351 2.092323 GAAGGCCCTCCACACAAATAC 58.908 52.381 0.00 0.00 33.74 1.89
4217 5352 1.072266 AGGCCCTCCACACAAATACA 58.928 50.000 0.00 0.00 33.74 2.29
4218 5353 1.173913 GGCCCTCCACACAAATACAC 58.826 55.000 0.00 0.00 0.00 2.90
4219 5354 1.271926 GGCCCTCCACACAAATACACT 60.272 52.381 0.00 0.00 0.00 3.55
4220 5355 2.514803 GCCCTCCACACAAATACACTT 58.485 47.619 0.00 0.00 0.00 3.16
4221 5356 2.228822 GCCCTCCACACAAATACACTTG 59.771 50.000 0.00 0.00 0.00 3.16
4222 5357 2.819608 CCCTCCACACAAATACACTTGG 59.180 50.000 0.00 0.00 0.00 3.61
4223 5358 2.819608 CCTCCACACAAATACACTTGGG 59.180 50.000 0.00 0.00 35.72 4.12
4224 5359 3.486383 CTCCACACAAATACACTTGGGT 58.514 45.455 0.00 0.00 43.82 4.51
4227 5362 1.960689 ACACAAATACACTTGGGTGCC 59.039 47.619 0.00 0.00 41.42 5.01
4228 5363 2.238521 CACAAATACACTTGGGTGCCT 58.761 47.619 0.00 0.00 46.57 4.75
4229 5364 2.627699 CACAAATACACTTGGGTGCCTT 59.372 45.455 0.00 0.00 46.57 4.35
4230 5365 3.069443 CACAAATACACTTGGGTGCCTTT 59.931 43.478 0.00 0.00 46.57 3.11
4231 5366 4.279671 CACAAATACACTTGGGTGCCTTTA 59.720 41.667 0.00 0.00 46.57 1.85
4232 5367 4.896482 ACAAATACACTTGGGTGCCTTTAA 59.104 37.500 0.00 0.00 46.57 1.52
4233 5368 5.364157 ACAAATACACTTGGGTGCCTTTAAA 59.636 36.000 0.00 0.00 46.57 1.52
4234 5369 6.127026 ACAAATACACTTGGGTGCCTTTAAAA 60.127 34.615 0.00 0.00 46.57 1.52
4235 5370 6.487299 AATACACTTGGGTGCCTTTAAAAA 57.513 33.333 0.00 0.00 46.57 1.94
4256 5391 6.479395 AAAACTCTCCTTTAATTAGGGGGT 57.521 37.500 6.40 0.00 36.36 4.95
4257 5392 6.479395 AAACTCTCCTTTAATTAGGGGGTT 57.521 37.500 6.40 2.32 36.36 4.11
4258 5393 6.479395 AACTCTCCTTTAATTAGGGGGTTT 57.521 37.500 6.40 0.89 36.36 3.27
4259 5394 6.075949 ACTCTCCTTTAATTAGGGGGTTTC 57.924 41.667 6.40 0.00 36.36 2.78
4260 5395 5.796399 ACTCTCCTTTAATTAGGGGGTTTCT 59.204 40.000 6.40 0.00 36.36 2.52
4261 5396 6.277283 ACTCTCCTTTAATTAGGGGGTTTCTT 59.723 38.462 6.40 0.00 36.36 2.52
4262 5397 6.490492 TCTCCTTTAATTAGGGGGTTTCTTG 58.510 40.000 6.40 0.00 36.36 3.02
4263 5398 6.046286 TCTCCTTTAATTAGGGGGTTTCTTGT 59.954 38.462 6.40 0.00 36.36 3.16
4264 5399 6.626238 TCCTTTAATTAGGGGGTTTCTTGTT 58.374 36.000 6.69 0.00 35.90 2.83
4265 5400 7.077095 TCCTTTAATTAGGGGGTTTCTTGTTT 58.923 34.615 6.69 0.00 35.90 2.83
4266 5401 7.569485 TCCTTTAATTAGGGGGTTTCTTGTTTT 59.431 33.333 6.69 0.00 35.90 2.43
4267 5402 8.215050 CCTTTAATTAGGGGGTTTCTTGTTTTT 58.785 33.333 0.00 0.00 0.00 1.94
4291 5426 9.761504 TTTTTCTTGAACAATCATCAATTAGCA 57.238 25.926 0.00 0.00 36.30 3.49
4292 5427 9.761504 TTTTCTTGAACAATCATCAATTAGCAA 57.238 25.926 0.00 0.00 36.30 3.91
4293 5428 9.932207 TTTCTTGAACAATCATCAATTAGCAAT 57.068 25.926 0.00 0.00 36.30 3.56
4294 5429 9.932207 TTCTTGAACAATCATCAATTAGCAATT 57.068 25.926 0.00 0.00 36.30 2.32
4295 5430 9.932207 TCTTGAACAATCATCAATTAGCAATTT 57.068 25.926 0.00 0.00 36.30 1.82
4297 5432 9.708092 TTGAACAATCATCAATTAGCAATTTCA 57.292 25.926 0.00 0.00 34.96 2.69
4298 5433 9.878667 TGAACAATCATCAATTAGCAATTTCAT 57.121 25.926 0.00 0.00 0.00 2.57
4308 5443 9.857656 TCAATTAGCAATTTCATCTAATCTCCT 57.142 29.630 0.00 0.00 33.35 3.69
4331 5466 9.667989 TCCTTTAATACTTGTTTTCTTAAACGC 57.332 29.630 0.00 0.00 45.29 4.84
4332 5467 8.908678 CCTTTAATACTTGTTTTCTTAAACGCC 58.091 33.333 0.00 0.00 45.29 5.68
4333 5468 8.800231 TTTAATACTTGTTTTCTTAAACGCCC 57.200 30.769 0.00 0.00 45.29 6.13
4334 5469 6.644248 AATACTTGTTTTCTTAAACGCCCT 57.356 33.333 0.00 0.00 45.29 5.19
4335 5470 4.563337 ACTTGTTTTCTTAAACGCCCTC 57.437 40.909 0.00 0.00 45.29 4.30
4336 5471 4.204799 ACTTGTTTTCTTAAACGCCCTCT 58.795 39.130 0.00 0.00 45.29 3.69
4337 5472 4.643334 ACTTGTTTTCTTAAACGCCCTCTT 59.357 37.500 0.00 0.00 45.29 2.85
4338 5473 5.126545 ACTTGTTTTCTTAAACGCCCTCTTT 59.873 36.000 0.00 0.00 45.29 2.52
4339 5474 5.585820 TGTTTTCTTAAACGCCCTCTTTT 57.414 34.783 0.00 0.00 45.29 2.27
4340 5475 6.696441 TGTTTTCTTAAACGCCCTCTTTTA 57.304 33.333 0.00 0.00 45.29 1.52
4341 5476 7.098074 TGTTTTCTTAAACGCCCTCTTTTAA 57.902 32.000 0.00 0.00 45.29 1.52
4342 5477 7.545489 TGTTTTCTTAAACGCCCTCTTTTAAA 58.455 30.769 0.00 0.00 45.29 1.52
4343 5478 8.198778 TGTTTTCTTAAACGCCCTCTTTTAAAT 58.801 29.630 0.00 0.00 45.29 1.40
4344 5479 9.037737 GTTTTCTTAAACGCCCTCTTTTAAATT 57.962 29.630 0.00 0.00 34.79 1.82
4345 5480 9.602568 TTTTCTTAAACGCCCTCTTTTAAATTT 57.397 25.926 0.00 0.00 29.35 1.82
4348 5483 9.849166 TCTTAAACGCCCTCTTTTAAATTTATG 57.151 29.630 0.00 0.00 29.35 1.90
4349 5484 6.961359 AAACGCCCTCTTTTAAATTTATGC 57.039 33.333 0.00 0.00 0.00 3.14
4350 5485 5.652994 ACGCCCTCTTTTAAATTTATGCA 57.347 34.783 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.771639 CGAACTCCGATCCAGCCGA 61.772 63.158 0.00 0.00 41.76 5.54
1 2 2.278857 CGAACTCCGATCCAGCCG 60.279 66.667 0.00 0.00 41.76 5.52
2 3 3.207354 TCGAACTCCGATCCAGCC 58.793 61.111 0.00 0.00 43.23 4.85
9 10 2.033141 ACGTCCCTCGAACTCCGA 59.967 61.111 1.88 0.00 46.35 4.55
10 11 1.654954 ATGACGTCCCTCGAACTCCG 61.655 60.000 14.12 0.00 42.86 4.63
11 12 0.100861 GATGACGTCCCTCGAACTCC 59.899 60.000 14.12 0.00 42.86 3.85
12 13 0.248134 CGATGACGTCCCTCGAACTC 60.248 60.000 24.99 5.48 42.86 3.01
13 14 1.654954 CCGATGACGTCCCTCGAACT 61.655 60.000 28.68 1.14 42.86 3.01
14 15 1.226603 CCGATGACGTCCCTCGAAC 60.227 63.158 28.68 4.93 42.86 3.95
15 16 2.412323 CCCGATGACGTCCCTCGAA 61.412 63.158 28.68 6.36 42.86 3.71
16 17 2.827190 CCCGATGACGTCCCTCGA 60.827 66.667 28.68 7.05 42.86 4.04
17 18 4.570663 GCCCGATGACGTCCCTCG 62.571 72.222 23.26 23.26 46.00 4.63
18 19 3.148279 AGCCCGATGACGTCCCTC 61.148 66.667 14.12 9.05 37.88 4.30
19 20 3.461773 CAGCCCGATGACGTCCCT 61.462 66.667 14.12 0.00 37.88 4.20
20 21 3.014085 TTCAGCCCGATGACGTCCC 62.014 63.158 14.12 3.95 37.88 4.46
21 22 1.810030 GTTCAGCCCGATGACGTCC 60.810 63.158 14.12 0.00 37.88 4.79
22 23 2.158959 CGTTCAGCCCGATGACGTC 61.159 63.158 9.11 9.11 37.88 4.34
23 24 2.126071 CGTTCAGCCCGATGACGT 60.126 61.111 0.00 0.00 37.88 4.34
24 25 2.126071 ACGTTCAGCCCGATGACG 60.126 61.111 0.00 0.00 39.43 4.35
25 26 1.374252 ACACGTTCAGCCCGATGAC 60.374 57.895 0.00 0.00 0.00 3.06
26 27 1.374125 CACACGTTCAGCCCGATGA 60.374 57.895 0.00 0.00 0.00 2.92
27 28 3.027170 GCACACGTTCAGCCCGATG 62.027 63.158 0.00 0.00 0.00 3.84
28 29 2.742372 GCACACGTTCAGCCCGAT 60.742 61.111 0.00 0.00 0.00 4.18
29 30 3.923864 AGCACACGTTCAGCCCGA 61.924 61.111 0.00 0.00 0.00 5.14
30 31 3.716006 CAGCACACGTTCAGCCCG 61.716 66.667 0.00 0.00 0.00 6.13
31 32 1.891919 TTCAGCACACGTTCAGCCC 60.892 57.895 0.00 0.00 0.00 5.19
32 33 1.160329 AGTTCAGCACACGTTCAGCC 61.160 55.000 0.00 0.00 0.00 4.85
33 34 0.233332 GAGTTCAGCACACGTTCAGC 59.767 55.000 0.00 0.00 0.00 4.26
34 35 0.504384 CGAGTTCAGCACACGTTCAG 59.496 55.000 0.00 0.00 35.01 3.02
35 36 0.874175 CCGAGTTCAGCACACGTTCA 60.874 55.000 0.00 0.00 37.75 3.18
36 37 0.596600 TCCGAGTTCAGCACACGTTC 60.597 55.000 0.00 0.00 37.75 3.95
37 38 0.597637 CTCCGAGTTCAGCACACGTT 60.598 55.000 0.00 0.00 37.75 3.99
38 39 1.007271 CTCCGAGTTCAGCACACGT 60.007 57.895 0.00 0.00 37.75 4.49
39 40 1.734477 CCTCCGAGTTCAGCACACG 60.734 63.158 0.00 0.00 39.03 4.49
40 41 0.946221 CACCTCCGAGTTCAGCACAC 60.946 60.000 0.00 0.00 0.00 3.82
41 42 1.367471 CACCTCCGAGTTCAGCACA 59.633 57.895 0.00 0.00 0.00 4.57
42 43 0.667792 GACACCTCCGAGTTCAGCAC 60.668 60.000 0.00 0.00 0.00 4.40
43 44 1.666011 GACACCTCCGAGTTCAGCA 59.334 57.895 0.00 0.00 0.00 4.41
44 45 1.444553 CGACACCTCCGAGTTCAGC 60.445 63.158 0.00 0.00 0.00 4.26
45 46 0.387367 CACGACACCTCCGAGTTCAG 60.387 60.000 0.00 0.00 0.00 3.02
46 47 1.658114 CACGACACCTCCGAGTTCA 59.342 57.895 0.00 0.00 0.00 3.18
47 48 1.733399 GCACGACACCTCCGAGTTC 60.733 63.158 0.00 0.00 0.00 3.01
48 49 2.338984 GCACGACACCTCCGAGTT 59.661 61.111 0.00 0.00 0.00 3.01
49 50 4.039357 CGCACGACACCTCCGAGT 62.039 66.667 0.00 0.00 0.00 4.18
50 51 3.553437 AACGCACGACACCTCCGAG 62.553 63.158 0.00 0.00 0.00 4.63
51 52 3.547249 GAACGCACGACACCTCCGA 62.547 63.158 0.00 0.00 0.00 4.55
52 53 3.103911 GAACGCACGACACCTCCG 61.104 66.667 0.00 0.00 0.00 4.63
53 54 3.103911 CGAACGCACGACACCTCC 61.104 66.667 0.00 0.00 35.09 4.30
54 55 2.462255 TACCGAACGCACGACACCTC 62.462 60.000 0.00 0.00 35.09 3.85
55 56 2.554636 TACCGAACGCACGACACCT 61.555 57.895 0.00 0.00 35.09 4.00
56 57 2.050168 TACCGAACGCACGACACC 60.050 61.111 0.00 0.00 35.09 4.16
57 58 0.936297 AAGTACCGAACGCACGACAC 60.936 55.000 0.00 1.68 35.09 3.67
58 59 0.935831 CAAGTACCGAACGCACGACA 60.936 55.000 0.00 0.00 35.09 4.35
59 60 0.661187 TCAAGTACCGAACGCACGAC 60.661 55.000 0.00 0.00 35.09 4.34
60 61 0.241749 ATCAAGTACCGAACGCACGA 59.758 50.000 0.00 0.00 35.09 4.35
61 62 0.638746 GATCAAGTACCGAACGCACG 59.361 55.000 0.00 0.00 0.00 5.34
62 63 0.638746 CGATCAAGTACCGAACGCAC 59.361 55.000 0.00 0.00 0.00 5.34
63 64 0.457166 CCGATCAAGTACCGAACGCA 60.457 55.000 6.95 0.00 0.00 5.24
64 65 0.457337 ACCGATCAAGTACCGAACGC 60.457 55.000 6.95 0.00 0.00 4.84
65 66 1.542544 GACCGATCAAGTACCGAACG 58.457 55.000 5.81 5.81 0.00 3.95
66 67 1.542544 CGACCGATCAAGTACCGAAC 58.457 55.000 0.00 0.00 0.00 3.95
67 68 0.452987 CCGACCGATCAAGTACCGAA 59.547 55.000 0.00 0.00 0.00 4.30
68 69 0.392863 TCCGACCGATCAAGTACCGA 60.393 55.000 0.00 0.00 0.00 4.69
69 70 0.666913 ATCCGACCGATCAAGTACCG 59.333 55.000 0.00 0.00 0.00 4.02
70 71 1.334779 CGATCCGACCGATCAAGTACC 60.335 57.143 4.93 0.00 46.85 3.34
71 72 1.334779 CCGATCCGACCGATCAAGTAC 60.335 57.143 4.93 0.00 46.85 2.73
72 73 0.949397 CCGATCCGACCGATCAAGTA 59.051 55.000 4.93 0.00 46.85 2.24
73 74 1.734137 CCGATCCGACCGATCAAGT 59.266 57.895 4.93 0.00 46.85 3.16
74 75 1.007271 CCCGATCCGACCGATCAAG 60.007 63.158 4.93 0.00 46.85 3.02
75 76 1.038681 TTCCCGATCCGACCGATCAA 61.039 55.000 4.93 0.00 46.85 2.57
76 77 1.452953 CTTCCCGATCCGACCGATCA 61.453 60.000 4.93 0.00 46.85 2.92
77 78 1.170919 TCTTCCCGATCCGACCGATC 61.171 60.000 0.00 0.00 43.58 3.69
78 79 1.152819 TCTTCCCGATCCGACCGAT 60.153 57.895 0.00 0.00 0.00 4.18
79 80 2.117156 GTCTTCCCGATCCGACCGA 61.117 63.158 0.00 0.00 0.00 4.69
80 81 2.412112 GTCTTCCCGATCCGACCG 59.588 66.667 0.00 0.00 0.00 4.79
81 82 1.097547 TACGTCTTCCCGATCCGACC 61.098 60.000 0.00 0.00 0.00 4.79
82 83 0.028637 GTACGTCTTCCCGATCCGAC 59.971 60.000 0.00 0.00 0.00 4.79
83 84 1.431488 CGTACGTCTTCCCGATCCGA 61.431 60.000 7.22 0.00 0.00 4.55
84 85 1.010350 CGTACGTCTTCCCGATCCG 60.010 63.158 7.22 0.00 0.00 4.18
85 86 0.028637 GTCGTACGTCTTCCCGATCC 59.971 60.000 16.05 0.00 0.00 3.36
86 87 1.012841 AGTCGTACGTCTTCCCGATC 58.987 55.000 16.05 0.00 0.00 3.69
87 88 1.936547 GTAGTCGTACGTCTTCCCGAT 59.063 52.381 19.61 0.00 0.00 4.18
88 89 1.337728 TGTAGTCGTACGTCTTCCCGA 60.338 52.381 19.61 0.00 30.95 5.14
89 90 1.078709 TGTAGTCGTACGTCTTCCCG 58.921 55.000 19.61 0.00 30.95 5.14
90 91 2.679837 TGATGTAGTCGTACGTCTTCCC 59.320 50.000 19.61 10.02 43.23 3.97
91 92 4.094212 GTTGATGTAGTCGTACGTCTTCC 58.906 47.826 19.61 11.53 43.23 3.46
92 93 4.094212 GGTTGATGTAGTCGTACGTCTTC 58.906 47.826 19.61 15.02 43.23 2.87
93 94 3.425359 CGGTTGATGTAGTCGTACGTCTT 60.425 47.826 19.61 2.66 43.23 3.01
94 95 2.094894 CGGTTGATGTAGTCGTACGTCT 59.905 50.000 18.54 18.54 43.23 4.18
95 96 2.434761 CGGTTGATGTAGTCGTACGTC 58.565 52.381 16.05 10.06 43.16 4.34
96 97 1.466360 GCGGTTGATGTAGTCGTACGT 60.466 52.381 16.05 0.00 30.95 3.57
97 98 1.186030 GCGGTTGATGTAGTCGTACG 58.814 55.000 9.53 9.53 30.95 3.67
98 99 1.186030 CGCGGTTGATGTAGTCGTAC 58.814 55.000 0.00 0.00 0.00 3.67
99 100 0.804364 ACGCGGTTGATGTAGTCGTA 59.196 50.000 12.47 0.00 0.00 3.43
100 101 0.038892 AACGCGGTTGATGTAGTCGT 60.039 50.000 12.47 0.00 0.00 4.34
101 102 0.365523 CAACGCGGTTGATGTAGTCG 59.634 55.000 12.47 0.00 45.28 4.18
102 103 1.126113 CACAACGCGGTTGATGTAGTC 59.874 52.381 22.26 0.00 45.28 2.59
103 104 1.144969 CACAACGCGGTTGATGTAGT 58.855 50.000 22.26 2.04 45.28 2.73
104 105 0.179225 GCACAACGCGGTTGATGTAG 60.179 55.000 22.26 1.41 45.28 2.74
105 106 0.601576 AGCACAACGCGGTTGATGTA 60.602 50.000 22.26 0.00 45.28 2.29
106 107 0.601576 TAGCACAACGCGGTTGATGT 60.602 50.000 22.26 11.72 45.28 3.06
107 108 0.515127 TTAGCACAACGCGGTTGATG 59.485 50.000 22.26 17.39 45.28 3.07
108 109 0.515564 GTTAGCACAACGCGGTTGAT 59.484 50.000 22.26 13.46 45.28 2.57
109 110 1.823260 CGTTAGCACAACGCGGTTGA 61.823 55.000 22.26 3.38 45.28 3.18
133 134 1.226603 CCCTCGTAGACCGAAAGCG 60.227 63.158 0.00 0.00 46.75 4.68
134 135 1.098050 TACCCTCGTAGACCGAAAGC 58.902 55.000 0.00 0.00 46.75 3.51
135 136 1.063174 CGTACCCTCGTAGACCGAAAG 59.937 57.143 0.00 0.00 46.75 2.62
136 137 1.086696 CGTACCCTCGTAGACCGAAA 58.913 55.000 0.00 0.00 46.75 3.46
137 138 0.036388 ACGTACCCTCGTAGACCGAA 60.036 55.000 0.00 0.00 46.75 4.30
138 139 0.740868 CACGTACCCTCGTAGACCGA 60.741 60.000 0.00 0.00 45.00 4.69
139 140 1.709147 CCACGTACCCTCGTAGACCG 61.709 65.000 0.00 0.00 42.27 4.79
140 141 0.392998 TCCACGTACCCTCGTAGACC 60.393 60.000 0.00 0.00 42.27 3.85
141 142 0.729690 GTCCACGTACCCTCGTAGAC 59.270 60.000 0.00 2.79 42.50 2.59
142 143 0.324614 TGTCCACGTACCCTCGTAGA 59.675 55.000 0.00 0.00 42.27 2.59
143 144 1.135575 GTTGTCCACGTACCCTCGTAG 60.136 57.143 0.00 0.00 42.27 3.51
144 145 0.881118 GTTGTCCACGTACCCTCGTA 59.119 55.000 0.00 0.00 42.27 3.43
145 146 1.108727 TGTTGTCCACGTACCCTCGT 61.109 55.000 0.00 0.00 45.10 4.18
146 147 0.665369 GTGTTGTCCACGTACCCTCG 60.665 60.000 0.00 0.00 33.61 4.63
147 148 3.206090 GTGTTGTCCACGTACCCTC 57.794 57.895 0.00 0.00 33.61 4.30
152 153 4.748514 AGGGGAGAGTGTTGTCCACGTA 62.749 54.545 0.00 0.00 44.77 3.57
154 155 1.472662 AGGGGAGAGTGTTGTCCACG 61.473 60.000 0.00 0.00 44.77 4.94
155 156 0.321996 GAGGGGAGAGTGTTGTCCAC 59.678 60.000 0.00 0.00 40.47 4.02
156 157 0.191064 AGAGGGGAGAGTGTTGTCCA 59.809 55.000 0.00 0.00 38.50 4.02
157 158 0.899019 GAGAGGGGAGAGTGTTGTCC 59.101 60.000 0.00 0.00 36.03 4.02
158 159 0.528470 CGAGAGGGGAGAGTGTTGTC 59.472 60.000 0.00 0.00 0.00 3.18
159 160 0.178958 ACGAGAGGGGAGAGTGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
160 161 0.969894 AACGAGAGGGGAGAGTGTTG 59.030 55.000 0.00 0.00 0.00 3.33
161 162 0.969894 CAACGAGAGGGGAGAGTGTT 59.030 55.000 0.00 0.00 0.00 3.32
162 163 1.536943 GCAACGAGAGGGGAGAGTGT 61.537 60.000 0.00 0.00 0.00 3.55
163 164 1.216710 GCAACGAGAGGGGAGAGTG 59.783 63.158 0.00 0.00 0.00 3.51
164 165 0.331954 TAGCAACGAGAGGGGAGAGT 59.668 55.000 0.00 0.00 0.00 3.24
165 166 1.339610 CATAGCAACGAGAGGGGAGAG 59.660 57.143 0.00 0.00 0.00 3.20
166 167 1.403814 CATAGCAACGAGAGGGGAGA 58.596 55.000 0.00 0.00 0.00 3.71
167 168 0.249657 GCATAGCAACGAGAGGGGAG 60.250 60.000 0.00 0.00 0.00 4.30
168 169 0.975556 TGCATAGCAACGAGAGGGGA 60.976 55.000 0.00 0.00 34.76 4.81
169 170 0.107456 ATGCATAGCAACGAGAGGGG 59.893 55.000 0.00 0.00 43.62 4.79
170 171 1.202568 TGATGCATAGCAACGAGAGGG 60.203 52.381 0.00 0.00 43.62 4.30
171 172 1.863454 GTGATGCATAGCAACGAGAGG 59.137 52.381 0.00 0.00 43.62 3.69
172 173 1.863454 GGTGATGCATAGCAACGAGAG 59.137 52.381 0.00 0.00 43.62 3.20
173 174 1.206849 TGGTGATGCATAGCAACGAGA 59.793 47.619 0.00 0.00 43.62 4.04
174 175 1.655484 TGGTGATGCATAGCAACGAG 58.345 50.000 0.00 0.00 43.62 4.18
175 176 1.941975 CATGGTGATGCATAGCAACGA 59.058 47.619 0.00 0.00 43.62 3.85
176 177 1.941975 TCATGGTGATGCATAGCAACG 59.058 47.619 0.00 1.35 43.62 4.10
177 178 3.819337 AGATCATGGTGATGCATAGCAAC 59.181 43.478 0.00 0.00 43.62 4.17
178 179 4.094830 AGATCATGGTGATGCATAGCAA 57.905 40.909 0.00 0.00 43.62 3.91
179 180 3.782656 AGATCATGGTGATGCATAGCA 57.217 42.857 0.00 4.86 44.86 3.49
180 181 3.366070 GCAAGATCATGGTGATGCATAGC 60.366 47.826 0.00 0.00 37.20 2.97
181 182 3.120304 CGCAAGATCATGGTGATGCATAG 60.120 47.826 0.00 0.00 37.20 2.23
182 183 2.809696 CGCAAGATCATGGTGATGCATA 59.190 45.455 0.00 0.00 37.20 3.14
183 184 1.607148 CGCAAGATCATGGTGATGCAT 59.393 47.619 0.00 0.00 37.20 3.96
184 185 1.018910 CGCAAGATCATGGTGATGCA 58.981 50.000 11.83 0.00 37.20 3.96
185 186 1.019673 ACGCAAGATCATGGTGATGC 58.980 50.000 0.00 3.06 37.20 3.91
186 187 2.011947 ACACGCAAGATCATGGTGATG 58.988 47.619 19.56 8.58 37.20 3.07
187 188 2.011947 CACACGCAAGATCATGGTGAT 58.988 47.619 19.56 0.00 40.34 3.06
188 189 1.270785 ACACACGCAAGATCATGGTGA 60.271 47.619 19.56 0.00 43.62 4.02
189 190 1.135888 CACACACGCAAGATCATGGTG 60.136 52.381 14.17 14.17 43.62 4.17
190 191 1.159285 CACACACGCAAGATCATGGT 58.841 50.000 0.00 0.00 43.62 3.55
191 192 1.159285 ACACACACGCAAGATCATGG 58.841 50.000 0.00 0.00 43.62 3.66
192 193 2.349580 CCTACACACACGCAAGATCATG 59.650 50.000 0.00 0.00 43.62 3.07
193 194 2.233676 TCCTACACACACGCAAGATCAT 59.766 45.455 0.00 0.00 43.62 2.45
194 195 1.616374 TCCTACACACACGCAAGATCA 59.384 47.619 0.00 0.00 43.62 2.92
195 196 2.363788 TCCTACACACACGCAAGATC 57.636 50.000 0.00 0.00 43.62 2.75
196 197 2.831685 TTCCTACACACACGCAAGAT 57.168 45.000 0.00 0.00 43.62 2.40
197 198 2.831685 ATTCCTACACACACGCAAGA 57.168 45.000 0.00 0.00 43.62 3.02
199 200 4.640789 AAAAATTCCTACACACACGCAA 57.359 36.364 0.00 0.00 0.00 4.85
218 219 7.230913 TGTCGGGGAACATAGTAATTTCAAAAA 59.769 33.333 0.00 0.00 0.00 1.94
219 220 6.715718 TGTCGGGGAACATAGTAATTTCAAAA 59.284 34.615 0.00 0.00 0.00 2.44
220 221 6.239396 TGTCGGGGAACATAGTAATTTCAAA 58.761 36.000 0.00 0.00 0.00 2.69
221 222 5.806818 TGTCGGGGAACATAGTAATTTCAA 58.193 37.500 0.00 0.00 0.00 2.69
222 223 5.046159 ACTGTCGGGGAACATAGTAATTTCA 60.046 40.000 0.00 0.00 0.00 2.69
223 224 5.425630 ACTGTCGGGGAACATAGTAATTTC 58.574 41.667 0.00 0.00 0.00 2.17
224 225 5.431179 ACTGTCGGGGAACATAGTAATTT 57.569 39.130 0.00 0.00 0.00 1.82
225 226 5.431179 AACTGTCGGGGAACATAGTAATT 57.569 39.130 0.00 0.00 0.00 1.40
226 227 5.046159 TGAAACTGTCGGGGAACATAGTAAT 60.046 40.000 0.00 0.00 0.00 1.89
227 228 4.283978 TGAAACTGTCGGGGAACATAGTAA 59.716 41.667 0.00 0.00 0.00 2.24
228 229 3.833650 TGAAACTGTCGGGGAACATAGTA 59.166 43.478 0.00 0.00 0.00 1.82
229 230 2.635915 TGAAACTGTCGGGGAACATAGT 59.364 45.455 0.00 0.00 0.00 2.12
230 231 3.328382 TGAAACTGTCGGGGAACATAG 57.672 47.619 0.00 0.00 0.00 2.23
231 232 3.517901 AGATGAAACTGTCGGGGAACATA 59.482 43.478 0.00 0.00 0.00 2.29
232 233 2.305927 AGATGAAACTGTCGGGGAACAT 59.694 45.455 0.00 0.00 0.00 2.71
233 234 1.697432 AGATGAAACTGTCGGGGAACA 59.303 47.619 0.00 0.00 0.00 3.18
234 235 2.474410 AGATGAAACTGTCGGGGAAC 57.526 50.000 0.00 0.00 0.00 3.62
235 236 2.370519 TCAAGATGAAACTGTCGGGGAA 59.629 45.455 0.00 0.00 0.00 3.97
236 237 1.974957 TCAAGATGAAACTGTCGGGGA 59.025 47.619 0.00 0.00 0.00 4.81
237 238 2.472695 TCAAGATGAAACTGTCGGGG 57.527 50.000 0.00 0.00 0.00 5.73
238 239 4.568359 CAGTATCAAGATGAAACTGTCGGG 59.432 45.833 4.16 0.00 0.00 5.14
239 240 4.033358 GCAGTATCAAGATGAAACTGTCGG 59.967 45.833 11.17 0.00 0.00 4.79
240 241 4.867047 AGCAGTATCAAGATGAAACTGTCG 59.133 41.667 11.17 0.00 0.00 4.35
241 242 5.871524 TGAGCAGTATCAAGATGAAACTGTC 59.128 40.000 11.17 8.77 0.00 3.51
242 243 5.798132 TGAGCAGTATCAAGATGAAACTGT 58.202 37.500 11.17 2.02 0.00 3.55
243 244 6.732531 TTGAGCAGTATCAAGATGAAACTG 57.267 37.500 6.97 6.97 34.31 3.16
244 245 7.934855 ATTTGAGCAGTATCAAGATGAAACT 57.065 32.000 0.00 0.00 40.16 2.66
389 390 0.037877 AGCCTGCAAGCTTCATCTGT 59.962 50.000 3.30 0.00 41.41 3.41
471 473 4.017037 TGGTAAATATGCCTTTCCTGGGAA 60.017 41.667 0.00 0.00 31.58 3.97
495 497 6.944234 ATATTACCAGGCTTTAAGTTCAGC 57.056 37.500 0.00 0.00 35.07 4.26
533 535 2.173356 TCTGCAATCTTGGGGGTCATAG 59.827 50.000 0.00 0.00 0.00 2.23
591 593 0.792640 GGCGCATATCTGGTTCATCG 59.207 55.000 10.83 0.00 0.00 3.84
886 889 4.499183 ACAATCAGCAGCTCAACTACTAC 58.501 43.478 0.00 0.00 0.00 2.73
1557 1645 4.141620 ACTCACCTACTTATTGCCATCTGG 60.142 45.833 0.00 0.00 38.53 3.86
1579 1667 5.418676 ACAATTTGCAACCCAGCATATAAC 58.581 37.500 0.00 0.00 45.19 1.89
1813 1901 3.247648 CCACGTCCGAATCAAATCATACC 59.752 47.826 0.00 0.00 0.00 2.73
2030 2118 1.402968 CAACAAATCCCTGGATGAGCG 59.597 52.381 0.00 0.00 34.70 5.03
2063 2151 3.892284 TCAACCAGCAAACCTTAGACAA 58.108 40.909 0.00 0.00 0.00 3.18
2091 2179 2.115910 CAAGCAGACCCCAGCCAA 59.884 61.111 0.00 0.00 0.00 4.52
2184 2279 3.007614 CCTAGAAAAACACCGAAGAGGGA 59.992 47.826 0.00 0.00 46.96 4.20
2333 2430 4.421948 GGTACTGTAAGAACATCTCCACG 58.578 47.826 0.00 0.00 37.43 4.94
2369 2466 1.820010 GAAAAGCTTGGGTGCCTGGG 61.820 60.000 0.00 0.00 0.00 4.45
2432 2530 1.164411 GGTCATTGTTCATCGCACCA 58.836 50.000 0.00 0.00 0.00 4.17
2496 2594 6.463995 TGTTTTAGAGTTGACCAAGCAAAT 57.536 33.333 0.00 0.00 0.00 2.32
2696 2795 1.837439 AGATCAAGCATGAACCCGGTA 59.163 47.619 0.00 0.00 39.49 4.02
3436 3566 2.763215 CAGCCCTTGGTAAGCCCA 59.237 61.111 0.00 0.00 43.27 5.36
3499 4612 1.149148 GAAGAACCAGTCGGAAGCAC 58.851 55.000 0.00 0.00 35.59 4.40
3873 4996 2.447047 AGAAACCTCCAAACACCCATCT 59.553 45.455 0.00 0.00 0.00 2.90
4002 5128 7.828508 AGCATGATATTATCACCATGTGTTT 57.171 32.000 8.51 0.00 43.01 2.83
4145 5280 0.466372 GGCCCTGCTTGGATCCTAAC 60.466 60.000 14.23 0.85 38.35 2.34
4146 5281 1.922821 GGCCCTGCTTGGATCCTAA 59.077 57.895 14.23 4.93 38.35 2.69
4147 5282 2.443394 CGGCCCTGCTTGGATCCTA 61.443 63.158 14.23 4.17 38.35 2.94
4148 5283 3.801997 CGGCCCTGCTTGGATCCT 61.802 66.667 14.23 0.00 38.35 3.24
4149 5284 4.883354 CCGGCCCTGCTTGGATCC 62.883 72.222 4.20 4.20 38.35 3.36
4150 5285 1.768684 TATCCGGCCCTGCTTGGATC 61.769 60.000 10.52 0.00 40.68 3.36
4151 5286 1.770110 TATCCGGCCCTGCTTGGAT 60.770 57.895 11.72 11.72 42.70 3.41
4152 5287 2.366301 TATCCGGCCCTGCTTGGA 60.366 61.111 0.00 0.00 37.43 3.53
4153 5288 2.111878 CTATCCGGCCCTGCTTGG 59.888 66.667 0.00 0.00 0.00 3.61
4154 5289 2.592861 GCTATCCGGCCCTGCTTG 60.593 66.667 0.00 0.00 0.00 4.01
4155 5290 4.241555 CGCTATCCGGCCCTGCTT 62.242 66.667 0.00 0.00 0.00 3.91
4174 5309 3.690685 TAATTGGCGTGGAGGGCGG 62.691 63.158 0.00 0.00 34.76 6.13
4175 5310 2.124901 TAATTGGCGTGGAGGGCG 60.125 61.111 0.00 0.00 34.76 6.13
4176 5311 1.376609 CTGTAATTGGCGTGGAGGGC 61.377 60.000 0.00 0.00 0.00 5.19
4177 5312 0.748005 CCTGTAATTGGCGTGGAGGG 60.748 60.000 0.00 0.00 0.00 4.30
4178 5313 0.251916 TCCTGTAATTGGCGTGGAGG 59.748 55.000 0.00 0.00 0.00 4.30
4179 5314 2.009774 CTTCCTGTAATTGGCGTGGAG 58.990 52.381 0.00 0.00 0.00 3.86
4180 5315 1.339631 CCTTCCTGTAATTGGCGTGGA 60.340 52.381 0.00 0.00 0.00 4.02
4181 5316 1.094785 CCTTCCTGTAATTGGCGTGG 58.905 55.000 0.00 0.00 0.00 4.94
4182 5317 0.451783 GCCTTCCTGTAATTGGCGTG 59.548 55.000 0.00 0.00 33.96 5.34
4183 5318 0.679960 GGCCTTCCTGTAATTGGCGT 60.680 55.000 0.00 0.00 44.07 5.68
4184 5319 1.384222 GGGCCTTCCTGTAATTGGCG 61.384 60.000 0.84 0.00 44.07 5.69
4185 5320 0.033109 AGGGCCTTCCTGTAATTGGC 60.033 55.000 0.00 0.00 46.07 4.52
4195 5330 0.251787 ATTTGTGTGGAGGGCCTTCC 60.252 55.000 26.78 26.78 37.77 3.46
4196 5331 2.092323 GTATTTGTGTGGAGGGCCTTC 58.908 52.381 7.89 6.03 34.31 3.46
4197 5332 1.427368 TGTATTTGTGTGGAGGGCCTT 59.573 47.619 7.89 0.00 34.31 4.35
4198 5333 1.072266 TGTATTTGTGTGGAGGGCCT 58.928 50.000 5.25 5.25 34.31 5.19
4199 5334 1.173913 GTGTATTTGTGTGGAGGGCC 58.826 55.000 0.00 0.00 0.00 5.80
4200 5335 2.200373 AGTGTATTTGTGTGGAGGGC 57.800 50.000 0.00 0.00 0.00 5.19
4201 5336 2.819608 CCAAGTGTATTTGTGTGGAGGG 59.180 50.000 0.00 0.00 0.00 4.30
4202 5337 2.819608 CCCAAGTGTATTTGTGTGGAGG 59.180 50.000 0.00 0.00 0.00 4.30
4203 5338 3.253188 CACCCAAGTGTATTTGTGTGGAG 59.747 47.826 0.00 0.00 39.30 3.86
4204 5339 3.218453 CACCCAAGTGTATTTGTGTGGA 58.782 45.455 0.00 0.00 39.30 4.02
4205 5340 2.288152 GCACCCAAGTGTATTTGTGTGG 60.288 50.000 5.28 0.00 46.35 4.17
4206 5341 2.288152 GGCACCCAAGTGTATTTGTGTG 60.288 50.000 0.00 0.00 46.35 3.82
4207 5342 1.960689 GGCACCCAAGTGTATTTGTGT 59.039 47.619 0.00 0.00 46.35 3.72
4208 5343 2.238521 AGGCACCCAAGTGTATTTGTG 58.761 47.619 0.00 0.00 46.35 3.33
4209 5344 2.675658 AGGCACCCAAGTGTATTTGT 57.324 45.000 0.00 0.00 46.35 2.83
4210 5345 5.461032 TTAAAGGCACCCAAGTGTATTTG 57.539 39.130 7.55 0.00 46.35 2.32
4211 5346 6.487299 TTTTAAAGGCACCCAAGTGTATTT 57.513 33.333 0.00 0.00 46.35 1.40
4212 5347 6.487299 TTTTTAAAGGCACCCAAGTGTATT 57.513 33.333 0.00 0.00 46.35 1.89
4232 5367 6.871035 ACCCCCTAATTAAAGGAGAGTTTTT 58.129 36.000 3.26 0.00 39.15 1.94
4233 5368 6.479395 ACCCCCTAATTAAAGGAGAGTTTT 57.521 37.500 3.26 0.00 39.15 2.43
4234 5369 6.479395 AACCCCCTAATTAAAGGAGAGTTT 57.521 37.500 3.26 0.00 39.15 2.66
4235 5370 6.277283 AGAAACCCCCTAATTAAAGGAGAGTT 59.723 38.462 3.26 2.27 39.15 3.01
4236 5371 5.796399 AGAAACCCCCTAATTAAAGGAGAGT 59.204 40.000 3.26 0.00 39.15 3.24
4237 5372 6.328782 AGAAACCCCCTAATTAAAGGAGAG 57.671 41.667 3.26 0.00 39.15 3.20
4238 5373 6.046286 ACAAGAAACCCCCTAATTAAAGGAGA 59.954 38.462 3.26 0.00 39.15 3.71
4239 5374 6.253758 ACAAGAAACCCCCTAATTAAAGGAG 58.746 40.000 3.26 0.00 39.15 3.69
4240 5375 6.222227 ACAAGAAACCCCCTAATTAAAGGA 57.778 37.500 3.26 0.00 39.15 3.36
4241 5376 6.928348 AACAAGAAACCCCCTAATTAAAGG 57.072 37.500 0.00 0.00 36.30 3.11
4265 5400 9.761504 TGCTAATTGATGATTGTTCAAGAAAAA 57.238 25.926 0.00 0.00 36.60 1.94
4266 5401 9.761504 TTGCTAATTGATGATTGTTCAAGAAAA 57.238 25.926 0.00 0.00 36.60 2.29
4267 5402 9.932207 ATTGCTAATTGATGATTGTTCAAGAAA 57.068 25.926 0.00 0.00 36.60 2.52
4268 5403 9.932207 AATTGCTAATTGATGATTGTTCAAGAA 57.068 25.926 0.00 0.00 36.60 2.52
4269 5404 9.932207 AAATTGCTAATTGATGATTGTTCAAGA 57.068 25.926 0.00 0.00 36.60 3.02
4271 5406 9.708092 TGAAATTGCTAATTGATGATTGTTCAA 57.292 25.926 0.00 0.00 37.49 2.69
4272 5407 9.878667 ATGAAATTGCTAATTGATGATTGTTCA 57.121 25.926 0.00 0.00 36.00 3.18
4282 5417 9.857656 AGGAGATTAGATGAAATTGCTAATTGA 57.142 29.630 0.00 0.00 35.58 2.57
4305 5440 9.667989 GCGTTTAAGAAAACAAGTATTAAAGGA 57.332 29.630 10.75 0.00 44.37 3.36
4306 5441 8.908678 GGCGTTTAAGAAAACAAGTATTAAAGG 58.091 33.333 2.33 0.00 44.37 3.11
4307 5442 8.908678 GGGCGTTTAAGAAAACAAGTATTAAAG 58.091 33.333 2.33 0.00 44.37 1.85
4308 5443 8.631797 AGGGCGTTTAAGAAAACAAGTATTAAA 58.368 29.630 2.33 0.00 44.37 1.52
4309 5444 8.168790 AGGGCGTTTAAGAAAACAAGTATTAA 57.831 30.769 2.33 0.00 44.37 1.40
4310 5445 7.662669 AGAGGGCGTTTAAGAAAACAAGTATTA 59.337 33.333 2.33 0.00 44.37 0.98
4311 5446 6.489022 AGAGGGCGTTTAAGAAAACAAGTATT 59.511 34.615 2.33 0.00 44.37 1.89
4312 5447 6.002082 AGAGGGCGTTTAAGAAAACAAGTAT 58.998 36.000 2.33 0.00 44.37 2.12
4313 5448 5.370679 AGAGGGCGTTTAAGAAAACAAGTA 58.629 37.500 2.33 0.00 44.37 2.24
4314 5449 4.204799 AGAGGGCGTTTAAGAAAACAAGT 58.795 39.130 2.33 0.00 44.37 3.16
4315 5450 4.830826 AGAGGGCGTTTAAGAAAACAAG 57.169 40.909 2.33 0.00 44.37 3.16
4316 5451 5.585820 AAAGAGGGCGTTTAAGAAAACAA 57.414 34.783 2.33 0.00 44.37 2.83
4317 5452 5.585820 AAAAGAGGGCGTTTAAGAAAACA 57.414 34.783 2.33 0.00 44.37 2.83
4318 5453 7.990541 TTTAAAAGAGGGCGTTTAAGAAAAC 57.009 32.000 0.00 0.00 38.52 2.43
4319 5454 9.602568 AAATTTAAAAGAGGGCGTTTAAGAAAA 57.397 25.926 0.00 0.00 38.52 2.29
4322 5457 9.849166 CATAAATTTAAAAGAGGGCGTTTAAGA 57.151 29.630 1.21 0.00 38.52 2.10
4323 5458 8.592155 GCATAAATTTAAAAGAGGGCGTTTAAG 58.408 33.333 1.21 0.00 38.52 1.85
4324 5459 8.088981 TGCATAAATTTAAAAGAGGGCGTTTAA 58.911 29.630 1.21 0.00 36.58 1.52
4325 5460 7.603651 TGCATAAATTTAAAAGAGGGCGTTTA 58.396 30.769 1.21 0.00 0.00 2.01
4326 5461 6.459923 TGCATAAATTTAAAAGAGGGCGTTT 58.540 32.000 1.21 0.00 0.00 3.60
4327 5462 6.031751 TGCATAAATTTAAAAGAGGGCGTT 57.968 33.333 1.21 0.00 0.00 4.84
4328 5463 5.652994 TGCATAAATTTAAAAGAGGGCGT 57.347 34.783 1.21 0.00 0.00 5.68


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.