Multiple sequence alignment - TraesCS6D01G334000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G334000 chr6D 100.000 4623 0 0 924 5546 436225657 436221035 0.000000e+00 8538
1 TraesCS6D01G334000 chr6D 100.000 542 0 0 1 542 436226580 436226039 0.000000e+00 1002
2 TraesCS6D01G334000 chr6B 93.653 3718 164 32 924 4604 659236853 659233171 0.000000e+00 5493
3 TraesCS6D01G334000 chr6B 88.889 495 22 15 4601 5082 659233213 659232739 3.720000e-161 579
4 TraesCS6D01G334000 chr6B 81.892 370 34 15 5204 5546 659230723 659230360 1.180000e-71 281
5 TraesCS6D01G334000 chr6B 86.624 157 11 7 386 542 659236999 659236853 1.240000e-36 165
6 TraesCS6D01G334000 chr6B 85.714 105 3 8 36 130 659237157 659237055 3.540000e-17 100
7 TraesCS6D01G334000 chr6A 92.647 3713 161 57 942 4604 583272768 583269118 0.000000e+00 5241
8 TraesCS6D01G334000 chr6A 85.700 1014 69 30 4594 5546 583269168 583268170 0.000000e+00 1000
9 TraesCS6D01G334000 chr6A 81.678 453 35 21 7 453 583273467 583273057 3.200000e-87 333
10 TraesCS6D01G334000 chrUn 97.861 374 2 1 1 368 270354030 270354403 4.680000e-180 641
11 TraesCS6D01G334000 chr7D 97.861 374 2 1 1 368 631658180 631657807 4.680000e-180 641
12 TraesCS6D01G334000 chr4A 77.487 764 146 20 1360 2110 59481812 59482562 8.530000e-118 435
13 TraesCS6D01G334000 chr4A 75.465 269 53 12 4211 4474 59484182 59484442 9.760000e-23 119
14 TraesCS6D01G334000 chr4D 76.712 803 161 20 1360 2149 402208392 402209181 1.850000e-114 424
15 TraesCS6D01G334000 chr4B 77.285 766 144 22 1360 2110 497551783 497552533 1.850000e-114 424
16 TraesCS6D01G334000 chr4B 77.990 209 39 6 4268 4474 497554170 497554373 2.100000e-24 124


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G334000 chr6D 436221035 436226580 5545 True 4770.000000 8538 100.0000 1 5546 2 chr6D.!!$R1 5545
1 TraesCS6D01G334000 chr6B 659230360 659237157 6797 True 1323.600000 5493 87.3544 36 5546 5 chr6B.!!$R1 5510
2 TraesCS6D01G334000 chr6A 583268170 583273467 5297 True 2191.333333 5241 86.6750 7 5546 3 chr6A.!!$R1 5539
3 TraesCS6D01G334000 chr4A 59481812 59484442 2630 False 277.000000 435 76.4760 1360 4474 2 chr4A.!!$F1 3114
4 TraesCS6D01G334000 chr4D 402208392 402209181 789 False 424.000000 424 76.7120 1360 2149 1 chr4D.!!$F1 789
5 TraesCS6D01G334000 chr4B 497551783 497554373 2590 False 274.000000 424 77.6375 1360 4474 2 chr4B.!!$F1 3114

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
473 493 0.035056 CCCAGAAGCTTCCACCGAAT 60.035 55.000 22.81 0.0 0.00 3.34 F
987 1007 0.104304 CCGGTAGAACCAAGGATCGG 59.896 60.000 0.00 0.0 38.47 4.18 F
988 1008 1.108776 CGGTAGAACCAAGGATCGGA 58.891 55.000 0.00 0.0 38.47 4.55 F
989 1009 1.687123 CGGTAGAACCAAGGATCGGAT 59.313 52.381 0.00 0.0 38.47 4.18 F
2385 2434 2.024871 CGGAGCGTCATCGTCCTC 59.975 66.667 0.00 0.0 39.49 3.71 F
2937 2986 0.811616 CGGAGCATGGCTACTTCACC 60.812 60.000 0.00 0.0 39.88 4.02 F
3677 3975 0.336048 AGCTGCTTCTCTCCTCTCCT 59.664 55.000 0.00 0.0 0.00 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2385 2434 0.534412 AGCATCCCACGAACTCAGAG 59.466 55.000 0.00 0.00 0.00 3.35 R
2733 2782 0.106167 TCCCATCGTAGTCCAGGAGG 60.106 60.000 0.00 0.00 0.00 4.30 R
2919 2968 0.253044 TGGTGAAGTAGCCATGCTCC 59.747 55.000 0.00 0.00 40.44 4.70 R
2937 2986 4.704540 ACAAGTGTCTAGAGATCTCACCTG 59.295 45.833 24.39 15.11 0.00 4.00 R
3532 3830 0.036010 CCTGGCATGAACCGAAGTCT 60.036 55.000 0.00 0.00 0.00 3.24 R
3998 4314 0.036164 CACGAATTCCCCTGTCCACA 59.964 55.000 0.00 0.00 0.00 4.17 R
5424 7666 0.119155 TCAACCCATGTCCCTCTCCT 59.881 55.000 0.00 0.00 0.00 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 140 1.442857 GCGCTCGTCTATCCATCCG 60.443 63.158 0.00 0.00 0.00 4.18
124 141 1.853114 GCGCTCGTCTATCCATCCGA 61.853 60.000 0.00 0.00 0.00 4.55
125 142 0.805614 CGCTCGTCTATCCATCCGAT 59.194 55.000 0.00 0.00 34.73 4.18
126 143 1.202087 CGCTCGTCTATCCATCCGATC 60.202 57.143 0.00 0.00 31.92 3.69
127 144 1.133407 GCTCGTCTATCCATCCGATCC 59.867 57.143 0.00 0.00 31.92 3.36
128 145 1.746220 CTCGTCTATCCATCCGATCCC 59.254 57.143 0.00 0.00 31.92 3.85
129 146 0.818296 CGTCTATCCATCCGATCCCC 59.182 60.000 0.00 0.00 31.92 4.81
130 147 1.891011 CGTCTATCCATCCGATCCCCA 60.891 57.143 0.00 0.00 31.92 4.96
131 148 2.257207 GTCTATCCATCCGATCCCCAA 58.743 52.381 0.00 0.00 31.92 4.12
132 149 2.840651 GTCTATCCATCCGATCCCCAAT 59.159 50.000 0.00 0.00 31.92 3.16
133 150 3.264450 GTCTATCCATCCGATCCCCAATT 59.736 47.826 0.00 0.00 31.92 2.32
134 151 2.887151 ATCCATCCGATCCCCAATTC 57.113 50.000 0.00 0.00 0.00 2.17
135 152 0.771127 TCCATCCGATCCCCAATTCC 59.229 55.000 0.00 0.00 0.00 3.01
136 153 0.478072 CCATCCGATCCCCAATTCCA 59.522 55.000 0.00 0.00 0.00 3.53
137 154 1.133513 CCATCCGATCCCCAATTCCAA 60.134 52.381 0.00 0.00 0.00 3.53
138 155 1.956477 CATCCGATCCCCAATTCCAAC 59.044 52.381 0.00 0.00 0.00 3.77
218 238 1.823899 GGGGGCATGACCGTCATTC 60.824 63.158 12.68 6.95 40.62 2.67
257 277 3.550692 TCCGATCTGGATAAGCCCA 57.449 52.632 2.65 0.00 43.74 5.36
258 278 1.801242 TCCGATCTGGATAAGCCCAA 58.199 50.000 2.65 0.00 43.74 4.12
259 279 1.694150 TCCGATCTGGATAAGCCCAAG 59.306 52.381 2.65 0.00 43.74 3.61
260 280 1.517242 CGATCTGGATAAGCCCAAGC 58.483 55.000 0.00 0.00 35.47 4.01
261 281 1.879796 CGATCTGGATAAGCCCAAGCC 60.880 57.143 0.00 0.00 41.25 4.35
262 282 0.480252 ATCTGGATAAGCCCAAGCCC 59.520 55.000 0.00 0.00 41.25 5.19
263 283 1.152673 CTGGATAAGCCCAAGCCCC 60.153 63.158 0.00 0.00 41.25 5.80
264 284 2.198703 GGATAAGCCCAAGCCCCC 59.801 66.667 0.00 0.00 41.25 5.40
265 285 2.203351 GATAAGCCCAAGCCCCCG 60.203 66.667 0.00 0.00 41.25 5.73
266 286 4.522975 ATAAGCCCAAGCCCCCGC 62.523 66.667 0.00 0.00 41.25 6.13
303 323 1.155155 TTGGTTGCCCCCTTCTTCC 59.845 57.895 0.00 0.00 0.00 3.46
304 324 1.660019 TTGGTTGCCCCCTTCTTCCA 61.660 55.000 0.00 0.00 0.00 3.53
307 327 1.778383 TTGCCCCCTTCTTCCACCT 60.778 57.895 0.00 0.00 0.00 4.00
308 328 1.368268 TTGCCCCCTTCTTCCACCTT 61.368 55.000 0.00 0.00 0.00 3.50
310 330 1.299976 CCCCCTTCTTCCACCTTCG 59.700 63.158 0.00 0.00 0.00 3.79
312 332 0.400594 CCCCTTCTTCCACCTTCGTT 59.599 55.000 0.00 0.00 0.00 3.85
313 333 1.610886 CCCCTTCTTCCACCTTCGTTC 60.611 57.143 0.00 0.00 0.00 3.95
314 334 1.429463 CCTTCTTCCACCTTCGTTCG 58.571 55.000 0.00 0.00 0.00 3.95
315 335 0.790814 CTTCTTCCACCTTCGTTCGC 59.209 55.000 0.00 0.00 0.00 4.70
316 336 0.105224 TTCTTCCACCTTCGTTCGCA 59.895 50.000 0.00 0.00 0.00 5.10
317 337 0.599204 TCTTCCACCTTCGTTCGCAC 60.599 55.000 0.00 0.00 0.00 5.34
318 338 1.566018 CTTCCACCTTCGTTCGCACC 61.566 60.000 0.00 0.00 0.00 5.01
319 339 2.030562 CCACCTTCGTTCGCACCT 59.969 61.111 0.00 0.00 0.00 4.00
320 340 2.027625 CCACCTTCGTTCGCACCTC 61.028 63.158 0.00 0.00 0.00 3.85
321 341 2.027625 CACCTTCGTTCGCACCTCC 61.028 63.158 0.00 0.00 0.00 4.30
322 342 2.809601 CCTTCGTTCGCACCTCCG 60.810 66.667 0.00 0.00 0.00 4.63
346 366 1.691434 GATCCTGGTCCAAGCTAGGAG 59.309 57.143 6.79 0.00 42.19 3.69
347 367 0.413832 TCCTGGTCCAAGCTAGGAGT 59.586 55.000 0.00 0.00 38.64 3.85
348 368 0.827368 CCTGGTCCAAGCTAGGAGTC 59.173 60.000 0.00 0.00 38.64 3.36
350 370 0.251653 TGGTCCAAGCTAGGAGTCGT 60.252 55.000 0.00 0.00 38.64 4.34
353 373 2.641305 GTCCAAGCTAGGAGTCGTAGA 58.359 52.381 21.25 0.07 38.64 2.59
354 374 2.614983 GTCCAAGCTAGGAGTCGTAGAG 59.385 54.545 21.25 10.87 38.64 2.43
355 375 1.335496 CCAAGCTAGGAGTCGTAGAGC 59.665 57.143 21.25 11.08 36.95 4.09
368 388 1.762460 TAGAGCAGCTAGGTGGGCC 60.762 63.158 22.69 6.97 0.00 5.80
369 389 4.537433 GAGCAGCTAGGTGGGCCG 62.537 72.222 22.69 0.00 40.50 6.13
472 492 1.374947 CCCAGAAGCTTCCACCGAA 59.625 57.895 22.81 0.00 0.00 4.30
473 493 0.035056 CCCAGAAGCTTCCACCGAAT 60.035 55.000 22.81 0.00 0.00 3.34
474 494 1.614317 CCCAGAAGCTTCCACCGAATT 60.614 52.381 22.81 0.00 0.00 2.17
475 495 1.470098 CCAGAAGCTTCCACCGAATTG 59.530 52.381 22.81 11.45 0.00 2.32
476 496 1.470098 CAGAAGCTTCCACCGAATTGG 59.530 52.381 22.81 0.00 46.41 3.16
478 498 0.539438 AAGCTTCCACCGAATTGGCA 60.539 50.000 0.00 0.00 43.94 4.92
479 499 0.539438 AGCTTCCACCGAATTGGCAA 60.539 50.000 0.68 0.68 43.94 4.52
480 500 0.388520 GCTTCCACCGAATTGGCAAC 60.389 55.000 0.00 0.00 43.94 4.17
483 503 2.645192 CCACCGAATTGGCAACCCC 61.645 63.158 0.00 0.00 43.94 4.95
484 504 1.905843 CACCGAATTGGCAACCCCA 60.906 57.895 0.00 0.00 43.94 4.96
485 505 1.078347 ACCGAATTGGCAACCCCAT 59.922 52.632 0.00 0.00 44.89 4.00
487 507 1.675720 CCGAATTGGCAACCCCATCC 61.676 60.000 0.00 0.00 44.89 3.51
488 508 0.684153 CGAATTGGCAACCCCATCCT 60.684 55.000 0.00 0.00 44.89 3.24
489 509 1.114627 GAATTGGCAACCCCATCCTC 58.885 55.000 0.00 0.00 44.89 3.71
490 510 0.325577 AATTGGCAACCCCATCCTCC 60.326 55.000 0.00 0.00 44.89 4.30
491 511 1.224003 ATTGGCAACCCCATCCTCCT 61.224 55.000 0.00 0.00 44.89 3.69
492 512 1.863155 TTGGCAACCCCATCCTCCTC 61.863 60.000 0.00 0.00 44.89 3.71
500 520 2.731461 CCATCCTCCTCCTCCCCCT 61.731 68.421 0.00 0.00 0.00 4.79
508 528 1.074850 CTCCTCCCCCTCTTCTCCC 60.075 68.421 0.00 0.00 0.00 4.30
512 532 0.398381 CTCCCCCTCTTCTCCCTCTG 60.398 65.000 0.00 0.00 0.00 3.35
515 535 0.693767 CCCCTCTTCTCCCTCTGCAT 60.694 60.000 0.00 0.00 0.00 3.96
516 536 1.211456 CCCTCTTCTCCCTCTGCATT 58.789 55.000 0.00 0.00 0.00 3.56
519 539 1.140652 CTCTTCTCCCTCTGCATTCCC 59.859 57.143 0.00 0.00 0.00 3.97
520 540 0.914644 CTTCTCCCTCTGCATTCCCA 59.085 55.000 0.00 0.00 0.00 4.37
521 541 0.620556 TTCTCCCTCTGCATTCCCAC 59.379 55.000 0.00 0.00 0.00 4.61
522 542 1.153289 CTCCCTCTGCATTCCCACG 60.153 63.158 0.00 0.00 0.00 4.94
523 543 2.825836 CCCTCTGCATTCCCACGC 60.826 66.667 0.00 0.00 0.00 5.34
524 544 3.197790 CCTCTGCATTCCCACGCG 61.198 66.667 3.53 3.53 0.00 6.01
525 545 3.197790 CTCTGCATTCCCACGCGG 61.198 66.667 12.47 0.00 35.76 6.46
980 1000 2.357760 GCGCACCGGTAGAACCAA 60.358 61.111 6.87 0.00 38.47 3.67
987 1007 0.104304 CCGGTAGAACCAAGGATCGG 59.896 60.000 0.00 0.00 38.47 4.18
988 1008 1.108776 CGGTAGAACCAAGGATCGGA 58.891 55.000 0.00 0.00 38.47 4.55
989 1009 1.687123 CGGTAGAACCAAGGATCGGAT 59.313 52.381 0.00 0.00 38.47 4.18
1041 1063 4.803426 CTGCTCGACCTGGCCGAC 62.803 72.222 0.00 0.00 32.18 4.79
2226 2254 2.592861 GTGATGATCAGCCGCCCC 60.593 66.667 8.78 0.00 0.00 5.80
2385 2434 2.024871 CGGAGCGTCATCGTCCTC 59.975 66.667 0.00 0.00 39.49 3.71
2457 2506 2.283529 ATGGAGCGTGGAGTCCGTT 61.284 57.895 4.30 0.00 35.37 4.44
2889 2938 2.157738 GATGAGCTGAGCAAGTGGTTT 58.842 47.619 7.39 0.00 0.00 3.27
2919 2968 2.753043 AAGCTGGGGATTGCTGCG 60.753 61.111 0.00 0.00 0.00 5.18
2937 2986 0.811616 CGGAGCATGGCTACTTCACC 60.812 60.000 0.00 0.00 39.88 4.02
3000 3050 1.671845 GTTGGTACGGTGTTGCTTTGA 59.328 47.619 0.00 0.00 0.00 2.69
3081 3131 5.789710 TGCGAATTAAGCAAAGGTACTAC 57.210 39.130 5.70 0.00 42.18 2.73
3091 3141 3.557264 GCAAAGGTACTACCAGAAGCAGT 60.557 47.826 8.01 0.00 41.95 4.40
3108 3158 5.633830 AGCAGTACATCCAAGAAAACATG 57.366 39.130 0.00 0.00 0.00 3.21
3197 3270 1.734465 GACATCCTTGCTTCCAGAACG 59.266 52.381 0.00 0.00 0.00 3.95
3267 3341 3.755378 CCATGAACCTAAGCATAGATGGC 59.245 47.826 0.00 0.00 28.63 4.40
3336 3418 5.728471 TGTTTGTGGTTGTGAATTTGACAT 58.272 33.333 0.00 0.00 0.00 3.06
3342 3424 5.914635 GTGGTTGTGAATTTGACATGTACTG 59.085 40.000 0.00 0.00 0.00 2.74
3344 3426 6.319911 TGGTTGTGAATTTGACATGTACTGAA 59.680 34.615 0.00 0.00 0.00 3.02
3532 3830 3.822192 CACGACGAGGCGGATCCA 61.822 66.667 13.41 0.00 37.29 3.41
3556 3854 2.331893 CGGTTCATGCCAGGCGAAA 61.332 57.895 7.03 0.00 0.00 3.46
3637 3935 2.632377 CAGCACATCGTGGAGGTTAAT 58.368 47.619 0.00 0.00 33.64 1.40
3640 3938 2.420129 GCACATCGTGGAGGTTAATCCT 60.420 50.000 0.00 0.00 40.77 3.24
3676 3974 1.134729 CAAGCTGCTTCTCTCCTCTCC 60.135 57.143 12.82 0.00 0.00 3.71
3677 3975 0.336048 AGCTGCTTCTCTCCTCTCCT 59.664 55.000 0.00 0.00 0.00 3.69
3678 3976 0.746659 GCTGCTTCTCTCCTCTCCTC 59.253 60.000 0.00 0.00 0.00 3.71
3679 3977 1.686115 GCTGCTTCTCTCCTCTCCTCT 60.686 57.143 0.00 0.00 0.00 3.69
3680 3978 2.301346 CTGCTTCTCTCCTCTCCTCTC 58.699 57.143 0.00 0.00 0.00 3.20
3897 4210 1.139853 GATCCAGTCCTCATCCACCAC 59.860 57.143 0.00 0.00 0.00 4.16
3973 4289 4.158384 CGAAACAGATTTGTTGAATCGGG 58.842 43.478 11.76 0.00 46.54 5.14
3974 4290 3.913089 AAACAGATTTGTTGAATCGGGC 58.087 40.909 1.85 0.00 46.54 6.13
3990 4306 3.297904 GCGGTGGGCCATTCATTT 58.702 55.556 10.70 0.00 34.80 2.32
3991 4307 1.141665 GCGGTGGGCCATTCATTTC 59.858 57.895 10.70 0.00 34.80 2.17
3992 4308 1.815866 CGGTGGGCCATTCATTTCC 59.184 57.895 10.70 2.71 34.09 3.13
3994 4310 1.337384 GGTGGGCCATTCATTTCCCC 61.337 60.000 10.70 0.00 37.97 4.81
3995 4311 1.381056 TGGGCCATTCATTTCCCCG 60.381 57.895 0.00 0.00 38.60 5.73
3996 4312 2.133641 GGGCCATTCATTTCCCCGG 61.134 63.158 4.39 0.00 32.60 5.73
3997 4313 2.133641 GGCCATTCATTTCCCCGGG 61.134 63.158 15.80 15.80 0.00 5.73
3998 4314 1.381191 GCCATTCATTTCCCCGGGT 60.381 57.895 21.85 0.00 0.00 5.28
4107 4433 9.614792 TTTATTTTAGAAGGAAGTAGCATCTCC 57.385 33.333 0.00 0.00 0.00 3.71
4128 4454 2.203394 ACTTGCCAGCACCACCAG 60.203 61.111 0.00 0.00 0.00 4.00
4147 4473 5.005971 CACCAGCAACTTTGAATGAAACTTG 59.994 40.000 0.00 0.00 0.00 3.16
4148 4474 5.105392 ACCAGCAACTTTGAATGAAACTTGA 60.105 36.000 0.00 0.00 0.00 3.02
4149 4475 5.461078 CCAGCAACTTTGAATGAAACTTGAG 59.539 40.000 0.00 0.00 0.00 3.02
4150 4476 5.461078 CAGCAACTTTGAATGAAACTTGAGG 59.539 40.000 0.00 0.00 0.00 3.86
4190 4516 7.999679 TGGTTTGACATGAATGAAATATCTCC 58.000 34.615 0.00 0.00 0.00 3.71
4197 4523 8.495160 ACATGAATGAAATATCTCCTCTCTCT 57.505 34.615 0.00 0.00 0.00 3.10
4546 4872 1.838077 AGGAAGGAAACGGGGTATGAG 59.162 52.381 0.00 0.00 0.00 2.90
4553 4879 0.675522 AACGGGGTATGAGCAAACCG 60.676 55.000 0.00 0.00 46.16 4.44
4555 4881 1.087771 CGGGGTATGAGCAAACCGAC 61.088 60.000 0.00 0.00 43.69 4.79
4557 4883 0.390735 GGGTATGAGCAAACCGACGT 60.391 55.000 0.00 0.00 36.57 4.34
4559 4885 1.670674 GGTATGAGCAAACCGACGTGA 60.671 52.381 0.00 0.00 0.00 4.35
4560 4886 2.268298 GTATGAGCAAACCGACGTGAT 58.732 47.619 0.00 0.00 0.00 3.06
4574 4900 3.061205 CGACGTGATGATGTCAATAACCG 60.061 47.826 5.35 0.00 38.90 4.44
4575 4901 4.109766 GACGTGATGATGTCAATAACCGA 58.890 43.478 0.00 0.00 38.90 4.69
4613 4939 3.113322 ACGACGATGATGTCAATAACCG 58.887 45.455 0.00 0.00 38.84 4.44
4614 4940 3.181494 ACGACGATGATGTCAATAACCGA 60.181 43.478 0.00 0.00 38.84 4.69
4655 4985 4.326548 CGACGATGATGATGATGATTCAGG 59.673 45.833 0.00 0.00 34.73 3.86
4656 4986 5.476614 GACGATGATGATGATGATTCAGGA 58.523 41.667 0.00 0.00 34.73 3.86
4726 5056 8.354711 ACAGGTTTCTTTCTTCTTTCTTCTTT 57.645 30.769 0.00 0.00 0.00 2.52
4727 5057 8.462811 ACAGGTTTCTTTCTTCTTTCTTCTTTC 58.537 33.333 0.00 0.00 0.00 2.62
4787 5131 1.581934 CATATACATATGCCCGCCCG 58.418 55.000 1.58 0.00 34.37 6.13
4788 5132 0.179056 ATATACATATGCCCGCCCGC 60.179 55.000 1.58 0.00 0.00 6.13
4789 5133 2.246761 TATACATATGCCCGCCCGCC 62.247 60.000 1.58 0.00 0.00 6.13
4809 5153 2.419990 CCCCATACATTGAGCGTGAGAA 60.420 50.000 0.00 0.00 0.00 2.87
4876 5220 5.107568 CGATGACGATGAAATCAATCAGAGG 60.108 44.000 0.00 0.00 45.97 3.69
4877 5221 5.343307 TGACGATGAAATCAATCAGAGGA 57.657 39.130 0.00 0.00 45.97 3.71
4878 5222 5.733676 TGACGATGAAATCAATCAGAGGAA 58.266 37.500 0.00 0.00 45.97 3.36
4879 5223 5.814188 TGACGATGAAATCAATCAGAGGAAG 59.186 40.000 0.00 0.00 45.97 3.46
4904 5248 4.840115 AGAAAAATGATTCTTTCAGCCCCA 59.160 37.500 12.12 0.00 36.23 4.96
4905 5249 5.486419 AGAAAAATGATTCTTTCAGCCCCAT 59.514 36.000 12.12 0.00 36.23 4.00
4906 5250 4.748277 AAATGATTCTTTCAGCCCCATG 57.252 40.909 0.00 0.00 37.89 3.66
4907 5251 3.675348 ATGATTCTTTCAGCCCCATGA 57.325 42.857 0.00 0.00 37.89 3.07
4911 5256 5.074804 TGATTCTTTCAGCCCCATGATATG 58.925 41.667 0.00 0.00 0.00 1.78
4943 5289 6.821616 AGTATATCCTTGATCCATCCATCC 57.178 41.667 0.00 0.00 0.00 3.51
4948 5294 2.377531 CCTTGATCCATCCATCCATCCA 59.622 50.000 0.00 0.00 0.00 3.41
4949 5295 3.011369 CCTTGATCCATCCATCCATCCAT 59.989 47.826 0.00 0.00 0.00 3.41
4950 5296 4.270834 CTTGATCCATCCATCCATCCATC 58.729 47.826 0.00 0.00 0.00 3.51
4951 5297 2.579400 TGATCCATCCATCCATCCATCC 59.421 50.000 0.00 0.00 0.00 3.51
5057 5403 2.545526 CTGCTGCATTATTACGACCAGG 59.454 50.000 1.31 0.00 0.00 4.45
5113 5478 0.900421 CAGATCAGACCAGGTGCTCA 59.100 55.000 0.00 0.00 0.00 4.26
5120 5485 3.776969 TCAGACCAGGTGCTCATTATCTT 59.223 43.478 0.00 0.00 0.00 2.40
5123 5488 3.614092 ACCAGGTGCTCATTATCTTGTG 58.386 45.455 0.00 0.00 0.00 3.33
5152 5542 4.214980 CAGCATCCTGGTAAATAAAGCG 57.785 45.455 0.00 0.00 35.38 4.68
5170 7407 1.065251 GCGACGGGAGACTAACCTAAG 59.935 57.143 0.00 0.00 0.00 2.18
5174 7411 1.829222 CGGGAGACTAACCTAAGCCAA 59.171 52.381 0.00 0.00 0.00 4.52
5176 7413 2.838813 GGGAGACTAACCTAAGCCAACT 59.161 50.000 0.00 0.00 0.00 3.16
5177 7414 3.369576 GGGAGACTAACCTAAGCCAACTG 60.370 52.174 0.00 0.00 0.00 3.16
5179 7416 4.162509 GGAGACTAACCTAAGCCAACTGAT 59.837 45.833 0.00 0.00 0.00 2.90
5180 7417 5.346181 AGACTAACCTAAGCCAACTGATC 57.654 43.478 0.00 0.00 0.00 2.92
5181 7418 4.777896 AGACTAACCTAAGCCAACTGATCA 59.222 41.667 0.00 0.00 0.00 2.92
5182 7419 5.091261 ACTAACCTAAGCCAACTGATCAG 57.909 43.478 21.37 21.37 0.00 2.90
5227 7469 1.040646 GGGATATCTCTGTGCCACGA 58.959 55.000 2.05 0.00 0.00 4.35
5279 7521 1.207089 TGTGACATTTCCTAGGAGCCG 59.793 52.381 12.26 6.71 0.00 5.52
5337 7579 0.800012 TACGGTTGGCAAATCTTCGC 59.200 50.000 0.00 0.00 0.00 4.70
5343 7585 1.603456 TGGCAAATCTTCGCTGTCAA 58.397 45.000 0.00 0.00 0.00 3.18
5345 7587 2.360483 TGGCAAATCTTCGCTGTCAAAA 59.640 40.909 0.00 0.00 0.00 2.44
5360 7602 4.393834 TGTCAAAAAGCAGCCAGTACATA 58.606 39.130 0.00 0.00 0.00 2.29
5362 7604 3.440173 TCAAAAAGCAGCCAGTACATAGC 59.560 43.478 0.00 0.00 0.00 2.97
5441 7683 1.566298 GCAGGAGAGGGACATGGGTT 61.566 60.000 0.00 0.00 0.00 4.11
5448 7690 0.833287 AGGGACATGGGTTGATCGAG 59.167 55.000 0.00 0.00 0.00 4.04
5451 7693 1.153369 ACATGGGTTGATCGAGCGG 60.153 57.895 6.07 1.49 0.00 5.52
5485 7756 4.839706 ATGGAATGCCCCGGGTGC 62.840 66.667 21.85 22.44 0.00 5.01
5505 7776 1.667724 CTCCATCATTTCGCCTCACAC 59.332 52.381 0.00 0.00 0.00 3.82
5508 7779 1.369091 ATCATTTCGCCTCACACGCC 61.369 55.000 0.00 0.00 0.00 5.68
5509 7780 2.034879 CATTTCGCCTCACACGCCT 61.035 57.895 0.00 0.00 0.00 5.52
5510 7781 1.302511 ATTTCGCCTCACACGCCTT 60.303 52.632 0.00 0.00 0.00 4.35
5512 7783 3.876589 TTCGCCTCACACGCCTTCC 62.877 63.158 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 72 3.652000 TCAAACGAAACGGCCGCC 61.652 61.111 28.58 14.14 0.00 6.13
104 116 1.857318 CGGATGGATAGACGAGCGCT 61.857 60.000 11.27 11.27 0.00 5.92
123 140 2.826674 TGGAGTTGGAATTGGGGATC 57.173 50.000 0.00 0.00 0.00 3.36
124 141 3.782413 ATTGGAGTTGGAATTGGGGAT 57.218 42.857 0.00 0.00 0.00 3.85
125 142 3.309556 GGTATTGGAGTTGGAATTGGGGA 60.310 47.826 0.00 0.00 0.00 4.81
126 143 3.031013 GGTATTGGAGTTGGAATTGGGG 58.969 50.000 0.00 0.00 0.00 4.96
127 144 3.981212 AGGTATTGGAGTTGGAATTGGG 58.019 45.455 0.00 0.00 0.00 4.12
128 145 5.329035 CAAGGTATTGGAGTTGGAATTGG 57.671 43.478 0.00 0.00 32.43 3.16
163 180 1.883926 CGGTTCCGGTTGGATTTTTCT 59.116 47.619 0.00 0.00 45.91 2.52
170 187 3.628982 GGGACGGTTCCGGTTGGA 61.629 66.667 15.66 0.00 43.94 3.53
171 188 3.943691 TGGGACGGTTCCGGTTGG 61.944 66.667 15.66 0.00 43.94 3.77
172 189 2.667199 GTGGGACGGTTCCGGTTG 60.667 66.667 15.66 0.00 43.94 3.77
173 190 4.303993 CGTGGGACGGTTCCGGTT 62.304 66.667 15.66 0.00 43.94 4.44
274 294 4.954680 CAACCAACGCGCACACGG 62.955 66.667 5.73 4.18 40.57 4.94
298 318 0.599204 GTGCGAACGAAGGTGGAAGA 60.599 55.000 0.00 0.00 0.00 2.87
303 323 2.027625 GGAGGTGCGAACGAAGGTG 61.028 63.158 0.00 0.00 0.00 4.00
304 324 2.342648 GGAGGTGCGAACGAAGGT 59.657 61.111 0.00 0.00 0.00 3.50
310 330 3.665675 ATCAGGCGGAGGTGCGAAC 62.666 63.158 0.00 0.00 35.06 3.95
312 332 3.838271 GATCAGGCGGAGGTGCGA 61.838 66.667 0.00 0.00 35.06 5.10
313 333 4.899239 GGATCAGGCGGAGGTGCG 62.899 72.222 0.00 0.00 35.06 5.34
314 334 3.474570 AGGATCAGGCGGAGGTGC 61.475 66.667 0.00 0.00 0.00 5.01
315 335 2.503061 CAGGATCAGGCGGAGGTG 59.497 66.667 0.00 0.00 0.00 4.00
316 336 2.765807 CCAGGATCAGGCGGAGGT 60.766 66.667 0.00 0.00 0.00 3.85
317 337 2.765807 ACCAGGATCAGGCGGAGG 60.766 66.667 0.00 0.00 0.00 4.30
318 338 2.801631 GGACCAGGATCAGGCGGAG 61.802 68.421 0.00 0.00 0.00 4.63
319 339 2.764128 GGACCAGGATCAGGCGGA 60.764 66.667 0.00 0.00 0.00 5.54
320 340 2.599645 CTTGGACCAGGATCAGGCGG 62.600 65.000 0.00 0.00 0.00 6.13
321 341 1.153289 CTTGGACCAGGATCAGGCG 60.153 63.158 0.00 0.00 0.00 5.52
322 342 1.452833 GCTTGGACCAGGATCAGGC 60.453 63.158 7.99 0.00 0.00 4.85
346 366 0.382515 CCACCTAGCTGCTCTACGAC 59.617 60.000 4.91 0.00 0.00 4.34
347 367 0.752009 CCCACCTAGCTGCTCTACGA 60.752 60.000 4.91 0.00 0.00 3.43
348 368 1.736586 CCCACCTAGCTGCTCTACG 59.263 63.158 4.91 0.00 0.00 3.51
350 370 1.762460 GGCCCACCTAGCTGCTCTA 60.762 63.158 4.91 0.00 0.00 2.43
472 492 1.224003 AGGAGGATGGGGTTGCCAAT 61.224 55.000 0.00 0.00 0.00 3.16
473 493 1.856873 AGGAGGATGGGGTTGCCAA 60.857 57.895 0.00 0.00 0.00 4.52
474 494 2.204291 AGGAGGATGGGGTTGCCA 60.204 61.111 0.00 0.00 0.00 4.92
475 495 2.597903 GAGGAGGATGGGGTTGCC 59.402 66.667 0.00 0.00 0.00 4.52
476 496 1.988982 GAGGAGGAGGATGGGGTTGC 61.989 65.000 0.00 0.00 0.00 4.17
478 498 1.004891 GGAGGAGGAGGATGGGGTT 59.995 63.158 0.00 0.00 0.00 4.11
479 499 2.706071 GGAGGAGGAGGATGGGGT 59.294 66.667 0.00 0.00 0.00 4.95
480 500 2.122189 GGGAGGAGGAGGATGGGG 60.122 72.222 0.00 0.00 0.00 4.96
483 503 1.152139 GAGGGGGAGGAGGAGGATG 60.152 68.421 0.00 0.00 0.00 3.51
484 504 0.938926 AAGAGGGGGAGGAGGAGGAT 60.939 60.000 0.00 0.00 0.00 3.24
485 505 1.550374 AAGAGGGGGAGGAGGAGGA 60.550 63.158 0.00 0.00 0.00 3.71
487 507 0.105709 GAGAAGAGGGGGAGGAGGAG 60.106 65.000 0.00 0.00 0.00 3.69
488 508 1.595058 GGAGAAGAGGGGGAGGAGGA 61.595 65.000 0.00 0.00 0.00 3.71
489 509 1.074850 GGAGAAGAGGGGGAGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
490 510 1.074850 GGGAGAAGAGGGGGAGGAG 60.075 68.421 0.00 0.00 0.00 3.69
491 511 1.550374 AGGGAGAAGAGGGGGAGGA 60.550 63.158 0.00 0.00 0.00 3.71
492 512 1.074850 GAGGGAGAAGAGGGGGAGG 60.075 68.421 0.00 0.00 0.00 4.30
500 520 1.207791 GGGAATGCAGAGGGAGAAGA 58.792 55.000 0.00 0.00 0.00 2.87
508 528 3.197790 CCGCGTGGGAATGCAGAG 61.198 66.667 7.26 0.00 38.47 3.35
1146 1168 2.102357 CGGTGGGAGACGATGACG 59.898 66.667 0.00 0.00 45.75 4.35
1599 1621 2.764547 AAGGTAGGGAGGGCGAGC 60.765 66.667 0.00 0.00 0.00 5.03
2205 2233 0.882042 GGCGGCTGATCATCACGATT 60.882 55.000 15.26 0.00 33.17 3.34
2382 2431 1.135915 CATCCCACGAACTCAGAGAGG 59.864 57.143 3.79 0.00 33.35 3.69
2385 2434 0.534412 AGCATCCCACGAACTCAGAG 59.466 55.000 0.00 0.00 0.00 3.35
2457 2506 4.166888 GAGCTCATGGCCTCGGCA 62.167 66.667 9.40 0.00 44.11 5.69
2592 2641 0.169009 GCGAGAAATGGTCCTTGCAC 59.831 55.000 0.00 0.00 39.13 4.57
2733 2782 0.106167 TCCCATCGTAGTCCAGGAGG 60.106 60.000 0.00 0.00 0.00 4.30
2889 2938 2.036571 CAGCTTCTCACATGGCGCA 61.037 57.895 10.83 0.00 0.00 6.09
2919 2968 0.253044 TGGTGAAGTAGCCATGCTCC 59.747 55.000 0.00 0.00 40.44 4.70
2937 2986 4.704540 ACAAGTGTCTAGAGATCTCACCTG 59.295 45.833 24.39 15.11 0.00 4.00
3000 3050 2.012051 GCGGTCAACAAGAATCCGGAT 61.012 52.381 12.38 12.38 41.24 4.18
3081 3131 3.616956 TCTTGGATGTACTGCTTCTGG 57.383 47.619 0.00 0.00 0.00 3.86
3091 3141 7.424803 CAACTTGACATGTTTTCTTGGATGTA 58.575 34.615 0.00 0.00 0.00 2.29
3108 3158 4.036262 TGGTTACTCATTGTGCAACTTGAC 59.964 41.667 0.00 0.00 38.04 3.18
3197 3270 7.147897 CCTCCAAAACCATAACCTCCTAAATTC 60.148 40.741 0.00 0.00 0.00 2.17
3336 3418 3.569194 TTGGCCAGAGTTTTCAGTACA 57.431 42.857 5.11 0.00 0.00 2.90
3342 3424 4.853924 TGAAGAATTGGCCAGAGTTTTC 57.146 40.909 5.11 8.38 0.00 2.29
3344 3426 4.562143 GCAATGAAGAATTGGCCAGAGTTT 60.562 41.667 5.11 0.00 45.05 2.66
3478 3776 2.223923 GCTCTCCTTGTGCTCGATGTAT 60.224 50.000 0.00 0.00 32.89 2.29
3514 3812 3.515286 GGATCCGCCTCGTCGTGA 61.515 66.667 0.00 0.00 0.00 4.35
3532 3830 0.036010 CCTGGCATGAACCGAAGTCT 60.036 55.000 0.00 0.00 0.00 3.24
3556 3854 2.114638 GAGATGGTCGAGCAGCTCT 58.885 57.895 40.53 30.30 0.00 4.09
3637 3935 1.080093 CACGCGCTTTACCTGAGGA 60.080 57.895 4.99 0.00 0.00 3.71
3640 3938 1.565156 CTTGCACGCGCTTTACCTGA 61.565 55.000 5.73 0.00 39.64 3.86
3676 3974 2.733956 AGAACTACAGCCAGAGGAGAG 58.266 52.381 0.00 0.00 0.00 3.20
3677 3975 2.909504 AGAACTACAGCCAGAGGAGA 57.090 50.000 0.00 0.00 0.00 3.71
3678 3976 3.357203 TGTAGAACTACAGCCAGAGGAG 58.643 50.000 10.14 0.00 40.77 3.69
3679 3977 3.451402 TGTAGAACTACAGCCAGAGGA 57.549 47.619 10.14 0.00 40.77 3.71
3778 4085 9.113876 GCTGTTGTTCAACATGTTTTATAGTAC 57.886 33.333 16.89 2.23 31.47 2.73
3861 4169 3.489355 TGGATCGGATTGGATTGGATTG 58.511 45.455 0.00 0.00 0.00 2.67
3862 4170 3.139025 ACTGGATCGGATTGGATTGGATT 59.861 43.478 0.00 0.00 0.00 3.01
3897 4210 2.646719 GCATGTGGCAGTGTGGTG 59.353 61.111 0.00 0.00 43.97 4.17
3973 4289 1.141665 GAAATGAATGGCCCACCGC 59.858 57.895 0.00 0.00 39.70 5.68
3974 4290 1.675720 GGGAAATGAATGGCCCACCG 61.676 60.000 0.00 0.00 40.39 4.94
3986 4302 1.677633 GTCCACACCCGGGGAAATG 60.678 63.158 27.92 16.84 34.34 2.32
3987 4303 2.137177 CTGTCCACACCCGGGGAAAT 62.137 60.000 27.92 0.00 34.34 2.17
3988 4304 2.773053 TGTCCACACCCGGGGAAA 60.773 61.111 27.92 3.97 34.34 3.13
3989 4305 3.246112 CTGTCCACACCCGGGGAA 61.246 66.667 27.92 1.37 34.34 3.97
3994 4310 2.137177 AATTCCCCTGTCCACACCCG 62.137 60.000 0.00 0.00 0.00 5.28
3995 4311 0.323451 GAATTCCCCTGTCCACACCC 60.323 60.000 0.00 0.00 0.00 4.61
3996 4312 0.676782 CGAATTCCCCTGTCCACACC 60.677 60.000 0.00 0.00 0.00 4.16
3997 4313 0.036306 ACGAATTCCCCTGTCCACAC 59.964 55.000 0.00 0.00 0.00 3.82
3998 4314 0.036164 CACGAATTCCCCTGTCCACA 59.964 55.000 0.00 0.00 0.00 4.17
4098 4424 0.175760 GGCAAGTGACGGAGATGCTA 59.824 55.000 0.00 0.00 37.20 3.49
4106 4432 3.357079 GGTGCTGGCAAGTGACGG 61.357 66.667 0.00 0.00 0.00 4.79
4107 4433 2.591429 TGGTGCTGGCAAGTGACG 60.591 61.111 0.00 0.00 0.00 4.35
4147 4473 2.496470 ACCAAGACAACGATACTCCCTC 59.504 50.000 0.00 0.00 0.00 4.30
4148 4474 2.537143 ACCAAGACAACGATACTCCCT 58.463 47.619 0.00 0.00 0.00 4.20
4149 4475 3.329929 AACCAAGACAACGATACTCCC 57.670 47.619 0.00 0.00 0.00 4.30
4150 4476 4.151867 GTCAAACCAAGACAACGATACTCC 59.848 45.833 0.00 0.00 36.06 3.85
4190 4516 0.242286 CACGACCACCACAGAGAGAG 59.758 60.000 0.00 0.00 0.00 3.20
4197 4523 4.248842 CCCTGCACGACCACCACA 62.249 66.667 0.00 0.00 0.00 4.17
4278 4604 0.733909 CGATGCAGAGCACGAAGTCA 60.734 55.000 0.00 0.00 43.04 3.41
4546 4872 0.796312 ACATCATCACGTCGGTTTGC 59.204 50.000 0.00 0.00 0.00 3.68
4553 4879 4.109766 TCGGTTATTGACATCATCACGTC 58.890 43.478 0.00 0.00 36.92 4.34
4555 4881 4.744631 TCATCGGTTATTGACATCATCACG 59.255 41.667 0.00 0.00 36.92 4.35
4557 4883 7.622893 TTTTCATCGGTTATTGACATCATCA 57.377 32.000 0.00 0.00 34.65 3.07
4626 4956 1.002792 TCATCATCATCGTCGTCGTCC 60.003 52.381 1.33 0.00 38.33 4.79
4629 4959 2.921126 TCATCATCATCATCGTCGTCG 58.079 47.619 0.00 0.00 38.55 5.12
4655 4985 4.036380 CCTAAAACCACACCAACTGACTTC 59.964 45.833 0.00 0.00 0.00 3.01
4656 4986 3.951680 CCTAAAACCACACCAACTGACTT 59.048 43.478 0.00 0.00 0.00 3.01
4787 5131 0.463654 TCACGCTCAATGTATGGGGC 60.464 55.000 0.00 0.00 0.00 5.80
4788 5132 1.138859 TCTCACGCTCAATGTATGGGG 59.861 52.381 0.00 0.00 0.00 4.96
4789 5133 2.602257 TCTCACGCTCAATGTATGGG 57.398 50.000 0.00 0.00 0.00 4.00
4790 5134 3.785486 TCTTCTCACGCTCAATGTATGG 58.215 45.455 0.00 0.00 0.00 2.74
4809 5153 3.127425 CGGAAGGAACAAACCTCTTCT 57.873 47.619 0.00 0.00 39.62 2.85
4876 5220 7.330454 GGGCTGAAAGAATCATTTTTCTTCTTC 59.670 37.037 0.35 0.00 43.42 2.87
4877 5221 7.157347 GGGCTGAAAGAATCATTTTTCTTCTT 58.843 34.615 0.35 0.00 43.42 2.52
4878 5222 6.295518 GGGGCTGAAAGAATCATTTTTCTTCT 60.296 38.462 0.35 0.00 43.42 2.85
4879 5223 5.871524 GGGGCTGAAAGAATCATTTTTCTTC 59.128 40.000 0.35 0.00 43.42 2.87
4904 5248 9.444668 AAGGATATACTATCTGTGCCATATCAT 57.555 33.333 0.00 0.00 30.97 2.45
4905 5249 8.699130 CAAGGATATACTATCTGTGCCATATCA 58.301 37.037 0.00 0.00 30.97 2.15
4906 5250 8.918116 TCAAGGATATACTATCTGTGCCATATC 58.082 37.037 0.00 0.00 0.00 1.63
4907 5251 8.844865 TCAAGGATATACTATCTGTGCCATAT 57.155 34.615 0.00 0.00 0.00 1.78
4911 5256 6.155221 TGGATCAAGGATATACTATCTGTGCC 59.845 42.308 0.00 0.00 0.00 5.01
4943 5289 2.624838 GTTGCAATAGTGGGGATGGATG 59.375 50.000 0.59 0.00 0.00 3.51
4948 5294 4.601406 TTAAGGTTGCAATAGTGGGGAT 57.399 40.909 0.59 0.00 0.00 3.85
4949 5295 4.601406 ATTAAGGTTGCAATAGTGGGGA 57.399 40.909 0.59 0.00 0.00 4.81
4950 5296 5.186797 TGAAATTAAGGTTGCAATAGTGGGG 59.813 40.000 0.59 0.00 0.00 4.96
4951 5297 6.099341 GTGAAATTAAGGTTGCAATAGTGGG 58.901 40.000 0.59 0.00 0.00 4.61
5113 5478 2.186826 GGCGGCGGCACAAGATAAT 61.187 57.895 29.41 0.00 42.47 1.28
5144 5534 3.429960 GGTTAGTCTCCCGTCGCTTTATT 60.430 47.826 0.00 0.00 0.00 1.40
5152 5542 1.408340 GGCTTAGGTTAGTCTCCCGTC 59.592 57.143 0.00 0.00 0.00 4.79
5179 7416 1.278537 TGTGGGTGATGATCAGCTGA 58.721 50.000 20.79 20.79 43.82 4.26
5180 7417 2.343484 ATGTGGGTGATGATCAGCTG 57.657 50.000 22.11 7.63 43.82 4.24
5181 7418 3.285484 GAAATGTGGGTGATGATCAGCT 58.715 45.455 22.11 3.22 43.82 4.24
5182 7419 3.018856 TGAAATGTGGGTGATGATCAGC 58.981 45.455 15.79 15.79 43.63 4.26
5192 7434 0.850100 TCCCTGTGTGAAATGTGGGT 59.150 50.000 0.00 0.00 36.23 4.51
5279 7521 1.206831 GCTTCGGCCGTTGAAGTTC 59.793 57.895 27.15 6.01 43.72 3.01
5337 7579 2.618241 TGTACTGGCTGCTTTTTGACAG 59.382 45.455 0.00 0.00 36.96 3.51
5343 7585 2.369394 GGCTATGTACTGGCTGCTTTT 58.631 47.619 0.00 0.00 0.00 2.27
5345 7587 0.181350 GGGCTATGTACTGGCTGCTT 59.819 55.000 0.00 0.00 0.00 3.91
5424 7666 0.119155 TCAACCCATGTCCCTCTCCT 59.881 55.000 0.00 0.00 0.00 3.69
5458 7700 0.394352 GGCATTCCATTCCACCGACT 60.394 55.000 0.00 0.00 0.00 4.18
5485 7756 1.667724 GTGTGAGGCGAAATGATGGAG 59.332 52.381 0.00 0.00 0.00 3.86
5508 7779 0.242017 CAAAGCCTCTTTGCCGGAAG 59.758 55.000 5.05 0.00 0.00 3.46
5509 7780 1.178534 CCAAAGCCTCTTTGCCGGAA 61.179 55.000 5.05 0.00 0.00 4.30
5510 7781 1.603455 CCAAAGCCTCTTTGCCGGA 60.603 57.895 5.05 0.00 0.00 5.14
5512 7783 2.964978 CCCAAAGCCTCTTTGCCG 59.035 61.111 12.43 3.05 0.00 5.69
5513 7784 1.881903 GAGCCCAAAGCCTCTTTGCC 61.882 60.000 12.43 6.85 45.47 4.52
5514 7785 1.588597 GAGCCCAAAGCCTCTTTGC 59.411 57.895 12.43 4.22 45.47 3.68
5516 7787 0.411058 ATGGAGCCCAAAGCCTCTTT 59.589 50.000 0.00 0.00 45.47 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.