Multiple sequence alignment - TraesCS6D01G333900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G333900 chr6D 100.000 5573 0 0 1 5573 436089919 436095491 0.000000e+00 10292.0
1 TraesCS6D01G333900 chr6D 83.498 1515 205 35 3954 5433 436076102 436077606 0.000000e+00 1371.0
2 TraesCS6D01G333900 chr6D 100.000 150 0 0 6009 6158 436095927 436096076 1.690000e-70 278.0
3 TraesCS6D01G333900 chr6D 84.656 189 23 2 723 909 436073518 436073702 3.790000e-42 183.0
4 TraesCS6D01G333900 chr6A 91.633 3490 205 37 77 3538 583006319 583009749 0.000000e+00 4747.0
5 TraesCS6D01G333900 chr6A 94.950 2020 95 6 3536 5550 583010041 583012058 0.000000e+00 3158.0
6 TraesCS6D01G333900 chr6A 83.333 1284 193 18 3954 5224 583000349 583001624 0.000000e+00 1166.0
7 TraesCS6D01G333900 chr6A 81.452 248 25 11 723 964 582997505 582997737 3.790000e-42 183.0
8 TraesCS6D01G333900 chr6A 100.000 49 0 0 4 52 610804314 610804266 2.360000e-14 91.6
9 TraesCS6D01G333900 chr6B 94.006 2736 125 20 2831 5550 658712027 658714739 0.000000e+00 4108.0
10 TraesCS6D01G333900 chr6B 90.338 2132 115 36 618 2734 658709985 658712040 0.000000e+00 2712.0
11 TraesCS6D01G333900 chr6B 85.597 2430 303 20 2832 5223 658665179 658667599 0.000000e+00 2505.0
12 TraesCS6D01G333900 chr6B 85.129 1197 155 16 1128 2317 658663622 658664802 0.000000e+00 1203.0
13 TraesCS6D01G333900 chr6B 86.789 545 65 4 77 618 658672201 658672741 8.830000e-168 601.0
14 TraesCS6D01G333900 chr6B 80.655 336 43 16 2412 2734 658664865 658665191 2.220000e-59 241.0
15 TraesCS6D01G333900 chr6B 90.196 51 5 0 2733 2783 529471288 529471338 3.980000e-07 67.6
16 TraesCS6D01G333900 chr1D 99.107 112 1 0 6047 6158 270281498 270281609 1.050000e-47 202.0
17 TraesCS6D01G333900 chr1D 100.000 34 0 0 48 81 240929123 240929090 5.150000e-06 63.9
18 TraesCS6D01G333900 chr2D 97.321 112 3 0 6047 6158 32752791 32752680 2.270000e-44 191.0
19 TraesCS6D01G333900 chr2D 95.536 112 5 0 6047 6158 543783249 543783138 4.900000e-41 180.0
20 TraesCS6D01G333900 chr2D 98.113 53 1 0 1 53 298940218 298940270 6.570000e-15 93.5
21 TraesCS6D01G333900 chr2D 94.737 38 0 2 48 84 616809625 616809661 2.400000e-04 58.4
22 TraesCS6D01G333900 chr7B 96.429 112 4 0 6047 6158 113636930 113636819 1.050000e-42 185.0
23 TraesCS6D01G333900 chr7B 94.643 112 6 0 6047 6158 69718617 69718506 2.280000e-39 174.0
24 TraesCS6D01G333900 chr7B 92.683 41 1 2 48 88 152901581 152901543 2.400000e-04 58.4
25 TraesCS6D01G333900 chr5B 95.536 112 5 0 6047 6158 144799076 144799187 4.900000e-41 180.0
26 TraesCS6D01G333900 chr5B 92.857 112 8 0 6047 6158 610112515 610112404 4.940000e-36 163.0
27 TraesCS6D01G333900 chr5B 84.722 72 8 2 2726 2795 25287339 25287269 1.110000e-07 69.4
28 TraesCS6D01G333900 chr3D 95.536 112 5 0 6047 6158 22980499 22980388 4.900000e-41 180.0
29 TraesCS6D01G333900 chr3D 96.364 55 1 1 1 55 94886651 94886598 8.500000e-14 89.8
30 TraesCS6D01G333900 chr3D 94.444 36 1 1 2726 2761 482496271 482496305 3.000000e-03 54.7
31 TraesCS6D01G333900 chr4B 94.643 112 6 0 6047 6158 424592436 424592547 2.280000e-39 174.0
32 TraesCS6D01G333900 chr3B 94.643 112 6 0 6047 6158 39913950 39914061 2.280000e-39 174.0
33 TraesCS6D01G333900 chr5A 96.364 55 2 0 4 58 510889188 510889134 2.360000e-14 91.6
34 TraesCS6D01G333900 chr3A 93.333 60 2 2 1 60 667194688 667194745 3.060000e-13 87.9
35 TraesCS6D01G333900 chrUn 93.220 59 2 2 1 59 147061673 147061729 1.100000e-12 86.1
36 TraesCS6D01G333900 chrUn 93.220 59 2 2 1 59 154086200 154086256 1.100000e-12 86.1
37 TraesCS6D01G333900 chrUn 93.220 59 2 2 1 59 154099336 154099392 1.100000e-12 86.1
38 TraesCS6D01G333900 chrUn 94.643 56 1 2 4 59 210809478 210809425 1.100000e-12 86.1
39 TraesCS6D01G333900 chr4A 100.000 35 0 0 48 82 339500048 339500082 1.430000e-06 65.8
40 TraesCS6D01G333900 chr4A 100.000 35 0 0 48 82 339545721 339545755 1.430000e-06 65.8
41 TraesCS6D01G333900 chr1A 97.436 39 0 1 48 85 717339 717301 1.430000e-06 65.8
42 TraesCS6D01G333900 chr1A 91.304 46 4 0 2734 2779 124018890 124018845 5.150000e-06 63.9
43 TraesCS6D01G333900 chr1B 100.000 34 0 0 48 81 124503657 124503624 5.150000e-06 63.9
44 TraesCS6D01G333900 chr5D 90.698 43 2 2 48 88 326914150 326914192 8.620000e-04 56.5
45 TraesCS6D01G333900 chr4D 87.755 49 2 3 48 94 187661007 187660961 3.000000e-03 54.7
46 TraesCS6D01G333900 chr2B 100.000 28 0 0 2734 2761 752858663 752858690 1.100000e-02 52.8
47 TraesCS6D01G333900 chr2B 100.000 28 0 0 2319 2346 794002716 794002689 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G333900 chr6D 436089919 436096076 6157 False 5285.000000 10292 100.000000 1 6158 2 chr6D.!!$F2 6157
1 TraesCS6D01G333900 chr6D 436073518 436077606 4088 False 777.000000 1371 84.077000 723 5433 2 chr6D.!!$F1 4710
2 TraesCS6D01G333900 chr6A 583006319 583012058 5739 False 3952.500000 4747 93.291500 77 5550 2 chr6A.!!$F2 5473
3 TraesCS6D01G333900 chr6A 582997505 583001624 4119 False 674.500000 1166 82.392500 723 5224 2 chr6A.!!$F1 4501
4 TraesCS6D01G333900 chr6B 658709985 658714739 4754 False 3410.000000 4108 92.172000 618 5550 2 chr6B.!!$F4 4932
5 TraesCS6D01G333900 chr6B 658663622 658667599 3977 False 1316.333333 2505 83.793667 1128 5223 3 chr6B.!!$F3 4095
6 TraesCS6D01G333900 chr6B 658672201 658672741 540 False 601.000000 601 86.789000 77 618 1 chr6B.!!$F2 541

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
151 152 0.037790 GAGCACTGGAGCTTCGAGTT 60.038 55.000 0.0 0.0 46.75 3.01 F
1119 1154 0.179189 GTCCAGAAAAATCGCCAGCG 60.179 55.000 5.5 5.5 41.35 5.18 F
1329 1382 0.108138 ACGACTACTTCATGCCAGCC 60.108 55.000 0.0 0.0 0.00 4.85 F
1330 1383 0.108186 CGACTACTTCATGCCAGCCA 60.108 55.000 0.0 0.0 0.00 4.75 F
2206 2307 0.108585 GTGCTCTGGTTTGTCTGGGA 59.891 55.000 0.0 0.0 0.00 4.37 F
2631 3351 0.396811 GTAGACAAGGGGTGTGTGCT 59.603 55.000 0.0 0.0 41.96 4.40 F
2639 3359 0.668535 GGGGTGTGTGCTTCTTTGAC 59.331 55.000 0.0 0.0 0.00 3.18 F
3118 3876 1.014352 CGTCTTATTTTCCTGGGGCG 58.986 55.000 0.0 0.0 0.00 6.13 F
4683 5812 1.220749 CATCCCACGGTCAATCGGT 59.779 57.895 0.0 0.0 0.00 4.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1328 1381 0.250295 AGACAATGTCGTGGTGGTGG 60.250 55.000 7.83 0.00 37.67 4.61 R
2782 3509 0.178981 ACATCTTGTTGGTGCAGGCT 60.179 50.000 0.00 0.00 0.00 4.58 R
2784 3511 0.883833 GGACATCTTGTTGGTGCAGG 59.116 55.000 0.00 0.00 0.00 4.85 R
2788 3517 2.163010 GCATCTGGACATCTTGTTGGTG 59.837 50.000 0.00 0.00 0.00 4.17 R
3564 4648 1.352352 CCATCCCCGGAAGCAGATAAT 59.648 52.381 0.73 0.00 0.00 1.28 R
4525 5648 1.935873 AGCTTGCGCATACACTGTATG 59.064 47.619 20.70 20.70 39.10 2.39 R
4683 5812 2.995466 CGTGAAGGTACGTGAGGTTA 57.005 50.000 0.00 0.00 39.13 2.85 R
5034 6163 6.755141 GCCATAACATGATATCATCAAATGGC 59.245 38.462 33.14 33.14 46.13 4.40 R
6114 7272 0.036388 TGATGTTCTCCTTCCGTGCC 60.036 55.000 0.00 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.430765 TTCGACCTCGGGAAGCGC 62.431 66.667 0.00 0.00 40.29 5.92
34 35 1.924408 CGCGAGCGCACTATATTTTG 58.076 50.000 11.47 0.00 42.06 2.44
35 36 1.397190 CGCGAGCGCACTATATTTTGG 60.397 52.381 11.47 0.00 42.06 3.28
36 37 1.864711 GCGAGCGCACTATATTTTGGA 59.135 47.619 11.47 0.00 41.49 3.53
37 38 2.286833 GCGAGCGCACTATATTTTGGAA 59.713 45.455 11.47 0.00 41.49 3.53
38 39 3.058914 GCGAGCGCACTATATTTTGGAAT 60.059 43.478 11.47 0.00 41.49 3.01
39 40 4.457810 CGAGCGCACTATATTTTGGAATG 58.542 43.478 11.47 0.00 0.00 2.67
40 41 4.611355 CGAGCGCACTATATTTTGGAATGG 60.611 45.833 11.47 0.00 0.00 3.16
41 42 4.460263 AGCGCACTATATTTTGGAATGGA 58.540 39.130 11.47 0.00 0.00 3.41
42 43 4.516698 AGCGCACTATATTTTGGAATGGAG 59.483 41.667 11.47 0.00 0.00 3.86
43 44 4.320494 GCGCACTATATTTTGGAATGGAGG 60.320 45.833 0.30 0.00 0.00 4.30
44 45 4.216257 CGCACTATATTTTGGAATGGAGGG 59.784 45.833 0.00 0.00 0.00 4.30
45 46 5.385198 GCACTATATTTTGGAATGGAGGGA 58.615 41.667 0.00 0.00 0.00 4.20
46 47 5.474876 GCACTATATTTTGGAATGGAGGGAG 59.525 44.000 0.00 0.00 0.00 4.30
47 48 6.605119 CACTATATTTTGGAATGGAGGGAGT 58.395 40.000 0.00 0.00 0.00 3.85
48 49 7.691791 GCACTATATTTTGGAATGGAGGGAGTA 60.692 40.741 0.00 0.00 0.00 2.59
49 50 8.386264 CACTATATTTTGGAATGGAGGGAGTAT 58.614 37.037 0.00 0.00 0.00 2.12
50 51 8.960064 ACTATATTTTGGAATGGAGGGAGTATT 58.040 33.333 0.00 0.00 0.00 1.89
53 54 9.981460 ATATTTTGGAATGGAGGGAGTATTATC 57.019 33.333 0.00 0.00 0.00 1.75
54 55 7.465900 TTTTGGAATGGAGGGAGTATTATCT 57.534 36.000 0.00 0.00 0.00 1.98
55 56 8.575736 TTTTGGAATGGAGGGAGTATTATCTA 57.424 34.615 0.00 0.00 0.00 1.98
56 57 8.757307 TTTGGAATGGAGGGAGTATTATCTAT 57.243 34.615 0.00 0.00 0.00 1.98
57 58 9.852784 TTTGGAATGGAGGGAGTATTATCTATA 57.147 33.333 0.00 0.00 0.00 1.31
58 59 9.494055 TTGGAATGGAGGGAGTATTATCTATAG 57.506 37.037 0.00 0.00 0.00 1.31
59 60 7.565398 TGGAATGGAGGGAGTATTATCTATAGC 59.435 40.741 0.00 0.00 0.00 2.97
60 61 7.015779 GGAATGGAGGGAGTATTATCTATAGCC 59.984 44.444 0.00 0.00 0.00 3.93
61 62 5.778542 TGGAGGGAGTATTATCTATAGCCC 58.221 45.833 0.00 0.00 35.87 5.19
62 63 5.500222 TGGAGGGAGTATTATCTATAGCCCT 59.500 44.000 9.37 9.37 43.01 5.19
63 64 6.009750 TGGAGGGAGTATTATCTATAGCCCTT 60.010 42.308 10.56 0.00 41.56 3.95
64 65 6.904093 GGAGGGAGTATTATCTATAGCCCTTT 59.096 42.308 10.56 0.00 41.56 3.11
65 66 7.403522 GGAGGGAGTATTATCTATAGCCCTTTT 59.596 40.741 10.56 0.00 41.56 2.27
66 67 8.382058 AGGGAGTATTATCTATAGCCCTTTTC 57.618 38.462 4.88 0.00 39.89 2.29
67 68 7.403522 AGGGAGTATTATCTATAGCCCTTTTCC 59.596 40.741 4.88 2.72 39.89 3.13
68 69 7.403522 GGGAGTATTATCTATAGCCCTTTTCCT 59.596 40.741 0.00 0.00 34.12 3.36
69 70 9.490083 GGAGTATTATCTATAGCCCTTTTCCTA 57.510 37.037 0.00 0.00 0.00 2.94
75 76 7.784470 ATCTATAGCCCTTTTCCTAGTAGTG 57.216 40.000 0.00 0.00 0.00 2.74
87 88 3.100671 CCTAGTAGTGAGGAGCCTTGTT 58.899 50.000 0.00 0.00 35.99 2.83
89 90 1.002544 AGTAGTGAGGAGCCTTGTTGC 59.997 52.381 0.00 0.00 0.00 4.17
95 96 1.675641 GGAGCCTTGTTGCCGTCAT 60.676 57.895 0.00 0.00 0.00 3.06
103 104 1.815421 GTTGCCGTCATCCGCATCT 60.815 57.895 0.00 0.00 34.38 2.90
115 116 2.571757 GCATCTCGTCGACCACCA 59.428 61.111 10.58 0.00 0.00 4.17
116 117 1.517257 GCATCTCGTCGACCACCAG 60.517 63.158 10.58 1.06 0.00 4.00
117 118 1.517257 CATCTCGTCGACCACCAGC 60.517 63.158 10.58 0.00 0.00 4.85
118 119 1.679305 ATCTCGTCGACCACCAGCT 60.679 57.895 10.58 0.00 0.00 4.24
119 120 1.251527 ATCTCGTCGACCACCAGCTT 61.252 55.000 10.58 0.00 0.00 3.74
151 152 0.037790 GAGCACTGGAGCTTCGAGTT 60.038 55.000 0.00 0.00 46.75 3.01
168 169 1.078759 GTTCGTCCACATCTGAGCCG 61.079 60.000 0.00 0.00 0.00 5.52
204 205 1.665599 TTTCCCGCGACTTTCCGAC 60.666 57.895 8.23 0.00 0.00 4.79
211 212 0.522915 GCGACTTTCCGACGACCTAG 60.523 60.000 0.00 0.00 32.56 3.02
231 232 3.465990 ACCATGGTGAGCTTCGATG 57.534 52.632 18.99 0.00 0.00 3.84
243 244 1.571919 CTTCGATGAAACCCTAGCCG 58.428 55.000 0.00 0.00 0.00 5.52
246 247 0.529992 CGATGAAACCCTAGCCGTCC 60.530 60.000 0.00 0.00 0.00 4.79
252 253 1.108132 AACCCTAGCCGTCCGATCTC 61.108 60.000 0.00 0.00 0.00 2.75
255 256 1.570475 CTAGCCGTCCGATCTCGAC 59.430 63.158 0.22 0.00 43.02 4.20
318 319 3.644966 AGATTTTGGCCGTTGGATCTA 57.355 42.857 0.00 0.00 0.00 1.98
319 320 3.963129 AGATTTTGGCCGTTGGATCTAA 58.037 40.909 0.00 0.00 0.00 2.10
326 327 1.132453 GCCGTTGGATCTAAAACTGGC 59.868 52.381 17.07 17.07 38.13 4.85
331 332 2.706890 TGGATCTAAAACTGGCGGTTC 58.293 47.619 12.95 0.00 37.12 3.62
335 336 0.794473 CTAAAACTGGCGGTTCCGTC 59.206 55.000 12.95 9.00 37.12 4.79
341 342 1.287425 CTGGCGGTTCCGTCTTAATC 58.713 55.000 16.56 0.00 37.80 1.75
361 362 9.931210 CTTAATCTATTTTGAATTGGTACCGAC 57.069 33.333 3.18 0.00 0.00 4.79
376 377 2.988570 ACCGACGAATCAGAGACTACT 58.011 47.619 0.00 0.00 0.00 2.57
395 396 2.360165 ACTACGTAGCCAACCTTATCCG 59.640 50.000 22.40 0.00 0.00 4.18
403 404 6.347402 CGTAGCCAACCTTATCCGAAATATTG 60.347 42.308 0.00 0.00 0.00 1.90
406 407 5.298276 GCCAACCTTATCCGAAATATTGTCA 59.702 40.000 0.00 0.00 0.00 3.58
459 460 6.089249 ACAATTTTGCAGAAAAGACCCTAG 57.911 37.500 0.00 0.00 34.53 3.02
471 474 8.899771 CAGAAAAGACCCTAGAACTTTAAAACA 58.100 33.333 0.00 0.00 34.18 2.83
533 536 7.524717 ACTTTTAGCAAAATGAAGCTTAGGA 57.475 32.000 0.00 0.00 42.05 2.94
571 574 2.796193 CCAGTCCGGCGATGATGGA 61.796 63.158 9.30 0.00 0.00 3.41
572 575 1.143838 CAGTCCGGCGATGATGGAA 59.856 57.895 9.30 0.00 32.60 3.53
573 576 0.877649 CAGTCCGGCGATGATGGAAG 60.878 60.000 9.30 0.00 32.60 3.46
574 577 2.108976 TCCGGCGATGATGGAAGC 59.891 61.111 9.30 0.00 0.00 3.86
577 580 1.645455 CGGCGATGATGGAAGCTTG 59.355 57.895 2.10 0.00 0.00 4.01
578 581 1.091771 CGGCGATGATGGAAGCTTGT 61.092 55.000 2.10 0.00 0.00 3.16
580 583 1.869767 GGCGATGATGGAAGCTTGTAG 59.130 52.381 2.10 0.00 0.00 2.74
581 584 1.262683 GCGATGATGGAAGCTTGTAGC 59.737 52.381 2.10 0.00 42.84 3.58
582 585 2.554142 CGATGATGGAAGCTTGTAGCA 58.446 47.619 2.10 1.17 45.56 3.49
583 586 2.938451 CGATGATGGAAGCTTGTAGCAA 59.062 45.455 2.10 0.00 45.56 3.91
584 587 3.242543 CGATGATGGAAGCTTGTAGCAAC 60.243 47.826 2.10 0.00 45.56 4.17
585 588 3.138884 TGATGGAAGCTTGTAGCAACA 57.861 42.857 2.10 0.00 45.56 3.33
586 589 3.689347 TGATGGAAGCTTGTAGCAACAT 58.311 40.909 2.10 2.55 45.56 2.71
587 590 4.842574 TGATGGAAGCTTGTAGCAACATA 58.157 39.130 2.10 0.00 45.56 2.29
588 591 4.877823 TGATGGAAGCTTGTAGCAACATAG 59.122 41.667 2.10 0.00 45.56 2.23
589 592 4.551702 TGGAAGCTTGTAGCAACATAGA 57.448 40.909 2.10 0.00 45.56 1.98
590 593 4.507710 TGGAAGCTTGTAGCAACATAGAG 58.492 43.478 2.10 0.00 45.56 2.43
591 594 4.222810 TGGAAGCTTGTAGCAACATAGAGA 59.777 41.667 2.10 0.00 45.56 3.10
592 595 5.178797 GGAAGCTTGTAGCAACATAGAGAA 58.821 41.667 2.10 0.00 45.56 2.87
593 596 5.819901 GGAAGCTTGTAGCAACATAGAGAAT 59.180 40.000 2.10 0.00 45.56 2.40
594 597 6.018343 GGAAGCTTGTAGCAACATAGAGAATC 60.018 42.308 2.10 0.00 45.56 2.52
614 617 8.246430 AGAATCGTAAGGACCTGAATGTATTA 57.754 34.615 0.00 0.00 38.47 0.98
618 621 8.162878 TCGTAAGGACCTGAATGTATTACTAG 57.837 38.462 0.00 0.00 38.47 2.57
619 622 7.776969 TCGTAAGGACCTGAATGTATTACTAGT 59.223 37.037 0.00 0.00 38.47 2.57
620 623 9.060347 CGTAAGGACCTGAATGTATTACTAGTA 57.940 37.037 0.00 0.00 0.00 1.82
708 711 2.325082 CCCCTGCGTGTGCTTGTAC 61.325 63.158 0.00 0.00 43.34 2.90
709 712 1.596752 CCCTGCGTGTGCTTGTACA 60.597 57.895 0.00 0.00 43.34 2.90
837 844 0.457681 GCAGCCTCTGAAGACTCGAC 60.458 60.000 0.00 0.00 32.44 4.20
861 869 1.002624 GTCAAGAACGGGGCATGGA 60.003 57.895 0.00 0.00 0.00 3.41
862 870 1.026718 GTCAAGAACGGGGCATGGAG 61.027 60.000 0.00 0.00 0.00 3.86
863 871 2.044946 AAGAACGGGGCATGGAGC 60.045 61.111 0.00 0.00 44.65 4.70
864 872 2.606587 AAGAACGGGGCATGGAGCT 61.607 57.895 0.00 0.00 44.79 4.09
979 990 3.477530 AGATAATAAAGCGGGCTTGGTC 58.522 45.455 6.69 1.98 36.26 4.02
1019 1039 5.308014 CATTATGCCCTCAACTAGCATGTA 58.692 41.667 6.96 0.00 46.30 2.29
1051 1071 5.583854 GCACACCTGCCATCTTCTATATATG 59.416 44.000 0.00 0.00 37.45 1.78
1080 1115 4.210955 GCAGCAGAGAAGAAGTATATGTGC 59.789 45.833 0.00 0.00 0.00 4.57
1096 1131 2.441410 TGTGCTCATCTCGTCTTCTCT 58.559 47.619 0.00 0.00 0.00 3.10
1119 1154 0.179189 GTCCAGAAAAATCGCCAGCG 60.179 55.000 5.50 5.50 41.35 5.18
1158 1211 1.141053 ACCTCACTGTTGGTCACCTTC 59.859 52.381 0.00 0.00 29.18 3.46
1308 1361 2.043992 TCCTTCTCCTTCACCGACAAA 58.956 47.619 0.00 0.00 0.00 2.83
1316 1369 2.030540 CCTTCACCGACAAAGACGACTA 60.031 50.000 0.00 0.00 0.00 2.59
1317 1370 2.693797 TCACCGACAAAGACGACTAC 57.306 50.000 0.00 0.00 0.00 2.73
1318 1371 2.224606 TCACCGACAAAGACGACTACT 58.775 47.619 0.00 0.00 0.00 2.57
1319 1372 2.620115 TCACCGACAAAGACGACTACTT 59.380 45.455 0.00 0.00 0.00 2.24
1320 1373 2.978489 CACCGACAAAGACGACTACTTC 59.022 50.000 0.00 0.00 0.00 3.01
1321 1374 2.620115 ACCGACAAAGACGACTACTTCA 59.380 45.455 0.00 0.00 0.00 3.02
1322 1375 3.255149 ACCGACAAAGACGACTACTTCAT 59.745 43.478 0.00 0.00 0.00 2.57
1325 1378 3.326747 ACAAAGACGACTACTTCATGCC 58.673 45.455 0.00 0.00 0.00 4.40
1326 1379 3.244078 ACAAAGACGACTACTTCATGCCA 60.244 43.478 0.00 0.00 0.00 4.92
1327 1380 2.949451 AGACGACTACTTCATGCCAG 57.051 50.000 0.00 0.00 0.00 4.85
1328 1381 1.134965 AGACGACTACTTCATGCCAGC 60.135 52.381 0.00 0.00 0.00 4.85
1329 1382 0.108138 ACGACTACTTCATGCCAGCC 60.108 55.000 0.00 0.00 0.00 4.85
1330 1383 0.108186 CGACTACTTCATGCCAGCCA 60.108 55.000 0.00 0.00 0.00 4.75
1342 1395 2.032528 CAGCCACCACCACGACAT 59.967 61.111 0.00 0.00 0.00 3.06
1347 1400 0.250295 CCACCACCACGACATTGTCT 60.250 55.000 14.54 0.00 0.00 3.41
1453 1506 1.611977 CGGAGCGGAACCTGTATATCA 59.388 52.381 0.00 0.00 0.00 2.15
1457 1510 1.935300 GCGGAACCTGTATATCAGCGG 60.935 57.143 0.00 0.00 42.38 5.52
1458 1511 1.611977 CGGAACCTGTATATCAGCGGA 59.388 52.381 0.00 0.00 42.38 5.54
1470 1523 0.832135 TCAGCGGACTTCACCCTTCT 60.832 55.000 0.00 0.00 0.00 2.85
1475 1528 1.896465 CGGACTTCACCCTTCTCTCTT 59.104 52.381 0.00 0.00 0.00 2.85
1511 1564 2.378547 TCCAATACCTCAACCTTGCCTT 59.621 45.455 0.00 0.00 0.00 4.35
1517 1570 2.031120 CCTCAACCTTGCCTTCAACAA 58.969 47.619 0.00 0.00 0.00 2.83
1864 1965 3.455910 CCACCCATCCTTATCAAGACTCA 59.544 47.826 0.00 0.00 0.00 3.41
1875 1976 6.325028 CCTTATCAAGACTCAACTCCCTATCA 59.675 42.308 0.00 0.00 0.00 2.15
1975 2076 0.756903 ACTTGTGCTCGGTGGTAACT 59.243 50.000 0.00 0.00 37.61 2.24
2045 2146 3.861840 TCATGATTCTCGACCTTGGAAC 58.138 45.455 0.00 0.00 0.00 3.62
2108 2209 4.564372 CCTCATGTCACTCACTGAATTACG 59.436 45.833 0.00 0.00 0.00 3.18
2186 2287 4.377839 ACTTGATCATACTGGACTGTCG 57.622 45.455 0.00 0.00 0.00 4.35
2188 2289 2.735151 TGATCATACTGGACTGTCGGT 58.265 47.619 1.07 6.06 0.00 4.69
2206 2307 0.108585 GTGCTCTGGTTTGTCTGGGA 59.891 55.000 0.00 0.00 0.00 4.37
2309 2439 4.083110 TCTGAAAAGATTGCAGCTTGCTAC 60.083 41.667 4.87 0.00 45.31 3.58
2555 3249 5.659971 TCCTACCTGAGTTTTAGTGTATCCC 59.340 44.000 0.00 0.00 0.00 3.85
2631 3351 0.396811 GTAGACAAGGGGTGTGTGCT 59.603 55.000 0.00 0.00 41.96 4.40
2639 3359 0.668535 GGGGTGTGTGCTTCTTTGAC 59.331 55.000 0.00 0.00 0.00 3.18
2745 3472 7.595819 ACCCATGTTCTATTTTTGACAAAGA 57.404 32.000 0.10 0.00 0.00 2.52
2784 3511 6.767902 TCTCAAAGATATCAATTACACCCAGC 59.232 38.462 5.32 0.00 0.00 4.85
2788 3517 1.767759 ATCAATTACACCCAGCCTGC 58.232 50.000 0.00 0.00 0.00 4.85
2797 3526 2.567497 CCCAGCCTGCACCAACAAG 61.567 63.158 0.00 0.00 0.00 3.16
2815 3555 2.398252 AGATGTCCAGATGCACACAG 57.602 50.000 0.00 0.00 0.00 3.66
2964 3704 6.058183 AGGACTTGTGCTTTATCATATGGTC 58.942 40.000 2.13 0.00 0.00 4.02
3061 3806 4.298103 AGCAACATCCAGAGAGTTCAAT 57.702 40.909 0.00 0.00 0.00 2.57
3117 3875 2.014857 GTCGTCTTATTTTCCTGGGGC 58.985 52.381 0.00 0.00 0.00 5.80
3118 3876 1.014352 CGTCTTATTTTCCTGGGGCG 58.986 55.000 0.00 0.00 0.00 6.13
3555 4639 7.897864 ACCTTAGTGTTATATCAGCATCCTAC 58.102 38.462 0.00 0.00 0.00 3.18
3564 4648 6.702449 ATATCAGCATCCTACAACCCATTA 57.298 37.500 0.00 0.00 0.00 1.90
3762 4846 4.908601 TTGGAGAAACATGAGCTCCTTA 57.091 40.909 23.52 14.41 46.56 2.69
3849 4936 7.157347 TCATCGATCTTAGCTTCAATATGCTT 58.843 34.615 0.00 0.00 40.35 3.91
3873 4960 2.561037 CGCCGTGCCTTTCCCTTTT 61.561 57.895 0.00 0.00 0.00 2.27
4047 5167 3.697045 CTCTCCAAATACTCGACCTGTCT 59.303 47.826 0.00 0.00 0.00 3.41
4183 5303 3.209410 GAATCATGTAACCTGAGGCTGG 58.791 50.000 0.00 0.00 0.00 4.85
4308 5428 1.789523 TCCCTGTATGGCTAGGTCAC 58.210 55.000 0.00 0.00 31.99 3.67
4525 5648 5.327091 CAAATGGAATCGCGGAATATGATC 58.673 41.667 6.13 0.00 0.00 2.92
4683 5812 1.220749 CATCCCACGGTCAATCGGT 59.779 57.895 0.00 0.00 0.00 4.69
5034 6163 1.649664 CTCCTGTGCAAGAAGGATCG 58.350 55.000 13.00 1.61 41.74 3.69
5345 6491 4.212214 GGAGCTCTTATCCGTGCATTTTAG 59.788 45.833 14.64 0.00 0.00 1.85
5351 6497 2.489938 TCCGTGCATTTTAGGCTCTT 57.510 45.000 0.00 0.00 0.00 2.85
5424 6580 5.763876 ATAACCCAAGCTCTTGACTACTT 57.236 39.130 10.94 0.00 42.93 2.24
5469 6627 4.976224 CCTTGTATTAAAAAGGGGTCCG 57.024 45.455 6.94 0.00 39.49 4.79
5550 6708 9.956720 CCATTATTTTTGAGAACTCACATATCC 57.043 33.333 3.88 0.00 39.66 2.59
5556 6714 9.904198 TTTTTGAGAACTCACATATCCATATGA 57.096 29.630 12.61 0.00 42.42 2.15
5560 6718 9.498176 TGAGAACTCACATATCCATATGATTTG 57.502 33.333 12.61 4.55 42.42 2.32
5561 6719 8.859236 AGAACTCACATATCCATATGATTTGG 57.141 34.615 12.61 0.00 42.05 3.28
5562 6720 7.886970 AGAACTCACATATCCATATGATTTGGG 59.113 37.037 12.61 3.40 42.05 4.12
5563 6721 7.095183 ACTCACATATCCATATGATTTGGGT 57.905 36.000 12.61 4.89 42.05 4.51
5564 6722 8.218423 ACTCACATATCCATATGATTTGGGTA 57.782 34.615 12.61 0.00 42.05 3.69
5565 6723 8.668653 ACTCACATATCCATATGATTTGGGTAA 58.331 33.333 12.61 0.00 42.05 2.85
5566 6724 9.690913 CTCACATATCCATATGATTTGGGTAAT 57.309 33.333 12.61 0.00 42.05 1.89
5567 6725 9.685276 TCACATATCCATATGATTTGGGTAATC 57.315 33.333 12.61 0.00 42.05 1.75
6029 7187 4.326413 CGAAAAACATCATTCTCGCTCA 57.674 40.909 0.00 0.00 0.00 4.26
6030 7188 4.711721 CGAAAAACATCATTCTCGCTCAA 58.288 39.130 0.00 0.00 0.00 3.02
6031 7189 5.146460 CGAAAAACATCATTCTCGCTCAAA 58.854 37.500 0.00 0.00 0.00 2.69
6032 7190 5.282310 CGAAAAACATCATTCTCGCTCAAAG 59.718 40.000 0.00 0.00 0.00 2.77
6033 7191 5.947228 AAAACATCATTCTCGCTCAAAGA 57.053 34.783 0.00 0.00 0.00 2.52
6034 7192 5.947228 AAACATCATTCTCGCTCAAAGAA 57.053 34.783 0.00 0.00 37.18 2.52
6035 7193 5.947228 AACATCATTCTCGCTCAAAGAAA 57.053 34.783 0.00 0.00 36.41 2.52
6036 7194 5.288543 ACATCATTCTCGCTCAAAGAAAC 57.711 39.130 0.00 0.00 36.41 2.78
6037 7195 4.756642 ACATCATTCTCGCTCAAAGAAACA 59.243 37.500 0.00 0.00 36.41 2.83
6038 7196 5.239306 ACATCATTCTCGCTCAAAGAAACAA 59.761 36.000 0.00 0.00 36.41 2.83
6039 7197 5.095691 TCATTCTCGCTCAAAGAAACAAC 57.904 39.130 0.00 0.00 36.41 3.32
6040 7198 4.574421 TCATTCTCGCTCAAAGAAACAACA 59.426 37.500 0.00 0.00 36.41 3.33
6041 7199 4.955925 TTCTCGCTCAAAGAAACAACAA 57.044 36.364 0.00 0.00 30.00 2.83
6042 7200 4.955925 TCTCGCTCAAAGAAACAACAAA 57.044 36.364 0.00 0.00 0.00 2.83
6043 7201 4.658071 TCTCGCTCAAAGAAACAACAAAC 58.342 39.130 0.00 0.00 0.00 2.93
6044 7202 3.765026 TCGCTCAAAGAAACAACAAACC 58.235 40.909 0.00 0.00 0.00 3.27
6045 7203 3.191581 TCGCTCAAAGAAACAACAAACCA 59.808 39.130 0.00 0.00 0.00 3.67
6046 7204 3.547468 CGCTCAAAGAAACAACAAACCAG 59.453 43.478 0.00 0.00 0.00 4.00
6047 7205 4.674101 CGCTCAAAGAAACAACAAACCAGA 60.674 41.667 0.00 0.00 0.00 3.86
6048 7206 4.562789 GCTCAAAGAAACAACAAACCAGAC 59.437 41.667 0.00 0.00 0.00 3.51
6049 7207 5.622233 GCTCAAAGAAACAACAAACCAGACT 60.622 40.000 0.00 0.00 0.00 3.24
6050 7208 5.949735 TCAAAGAAACAACAAACCAGACTC 58.050 37.500 0.00 0.00 0.00 3.36
6051 7209 4.616181 AAGAAACAACAAACCAGACTCG 57.384 40.909 0.00 0.00 0.00 4.18
6052 7210 2.943033 AGAAACAACAAACCAGACTCGG 59.057 45.455 0.00 0.00 0.00 4.63
6053 7211 2.413310 AACAACAAACCAGACTCGGT 57.587 45.000 0.00 0.00 42.71 4.69
6054 7212 1.663695 ACAACAAACCAGACTCGGTG 58.336 50.000 0.00 0.00 39.95 4.94
6055 7213 0.307760 CAACAAACCAGACTCGGTGC 59.692 55.000 0.00 0.00 39.95 5.01
6056 7214 0.818040 AACAAACCAGACTCGGTGCC 60.818 55.000 0.00 0.00 39.95 5.01
6057 7215 1.227823 CAAACCAGACTCGGTGCCA 60.228 57.895 0.00 0.00 39.95 4.92
6058 7216 1.227853 AAACCAGACTCGGTGCCAC 60.228 57.895 0.00 0.00 39.95 5.01
6059 7217 1.978455 AAACCAGACTCGGTGCCACA 61.978 55.000 0.00 0.00 39.95 4.17
6060 7218 2.047844 CCAGACTCGGTGCCACAG 60.048 66.667 0.00 0.00 0.00 3.66
6061 7219 2.737180 CAGACTCGGTGCCACAGT 59.263 61.111 0.00 0.00 0.00 3.55
6062 7220 1.069765 CAGACTCGGTGCCACAGTT 59.930 57.895 0.00 0.00 0.00 3.16
6063 7221 0.946221 CAGACTCGGTGCCACAGTTC 60.946 60.000 0.00 0.00 0.00 3.01
6064 7222 2.022129 GACTCGGTGCCACAGTTCG 61.022 63.158 0.00 0.00 0.00 3.95
6065 7223 2.738521 CTCGGTGCCACAGTTCGG 60.739 66.667 0.00 0.00 0.00 4.30
6071 7229 2.434185 GCCACAGTTCGGCGATCA 60.434 61.111 19.04 0.00 40.35 2.92
6072 7230 2.032634 GCCACAGTTCGGCGATCAA 61.033 57.895 19.04 0.00 40.35 2.57
6073 7231 1.573829 GCCACAGTTCGGCGATCAAA 61.574 55.000 19.04 0.00 40.35 2.69
6074 7232 0.871722 CCACAGTTCGGCGATCAAAA 59.128 50.000 19.04 0.00 0.00 2.44
6075 7233 1.468520 CCACAGTTCGGCGATCAAAAT 59.531 47.619 19.04 0.00 0.00 1.82
6076 7234 2.675844 CCACAGTTCGGCGATCAAAATA 59.324 45.455 19.04 0.00 0.00 1.40
6077 7235 3.126171 CCACAGTTCGGCGATCAAAATAA 59.874 43.478 19.04 0.00 0.00 1.40
6078 7236 4.088648 CACAGTTCGGCGATCAAAATAAC 58.911 43.478 19.04 8.23 0.00 1.89
6079 7237 3.749088 ACAGTTCGGCGATCAAAATAACA 59.251 39.130 19.04 0.00 0.00 2.41
6080 7238 4.142902 ACAGTTCGGCGATCAAAATAACAG 60.143 41.667 19.04 7.68 0.00 3.16
6081 7239 3.374058 AGTTCGGCGATCAAAATAACAGG 59.626 43.478 19.04 0.00 0.00 4.00
6082 7240 3.254470 TCGGCGATCAAAATAACAGGA 57.746 42.857 4.99 0.00 0.00 3.86
6083 7241 2.933906 TCGGCGATCAAAATAACAGGAC 59.066 45.455 4.99 0.00 0.00 3.85
6084 7242 2.675844 CGGCGATCAAAATAACAGGACA 59.324 45.455 0.00 0.00 0.00 4.02
6085 7243 3.485216 CGGCGATCAAAATAACAGGACAC 60.485 47.826 0.00 0.00 0.00 3.67
6086 7244 3.485216 GGCGATCAAAATAACAGGACACG 60.485 47.826 0.00 0.00 0.00 4.49
6087 7245 3.670203 CGATCAAAATAACAGGACACGC 58.330 45.455 0.00 0.00 0.00 5.34
6088 7246 3.124466 CGATCAAAATAACAGGACACGCA 59.876 43.478 0.00 0.00 0.00 5.24
6089 7247 4.651994 GATCAAAATAACAGGACACGCAG 58.348 43.478 0.00 0.00 0.00 5.18
6091 7249 4.633175 TCAAAATAACAGGACACGCAGTA 58.367 39.130 0.00 0.00 41.61 2.74
6092 7250 4.688879 TCAAAATAACAGGACACGCAGTAG 59.311 41.667 0.00 0.00 41.61 2.57
6093 7251 3.955650 AATAACAGGACACGCAGTAGT 57.044 42.857 0.00 0.00 41.61 2.73
6094 7252 3.955650 ATAACAGGACACGCAGTAGTT 57.044 42.857 0.00 0.00 41.61 2.24
6095 7253 2.150397 AACAGGACACGCAGTAGTTC 57.850 50.000 0.00 0.00 41.61 3.01
6096 7254 0.039437 ACAGGACACGCAGTAGTTCG 60.039 55.000 0.00 0.00 41.61 3.95
6097 7255 0.732880 CAGGACACGCAGTAGTTCGG 60.733 60.000 0.00 0.00 41.61 4.30
6098 7256 2.092882 GGACACGCAGTAGTTCGGC 61.093 63.158 0.00 0.00 41.61 5.54
6103 7261 4.874534 GCAGTAGTTCGGCGTACA 57.125 55.556 18.71 2.37 0.00 2.90
6104 7262 3.111536 GCAGTAGTTCGGCGTACAA 57.888 52.632 18.71 0.00 0.00 2.41
6105 7263 1.421382 GCAGTAGTTCGGCGTACAAA 58.579 50.000 18.71 3.65 0.00 2.83
6106 7264 1.794116 GCAGTAGTTCGGCGTACAAAA 59.206 47.619 18.71 1.13 0.00 2.44
6107 7265 2.221517 GCAGTAGTTCGGCGTACAAAAA 59.778 45.455 18.71 0.00 0.00 1.94
6122 7280 3.524346 AAAAAGGAAGGGCACGGAA 57.476 47.368 0.00 0.00 0.00 4.30
6123 7281 1.328279 AAAAAGGAAGGGCACGGAAG 58.672 50.000 0.00 0.00 0.00 3.46
6124 7282 0.539669 AAAAGGAAGGGCACGGAAGG 60.540 55.000 0.00 0.00 0.00 3.46
6125 7283 1.423794 AAAGGAAGGGCACGGAAGGA 61.424 55.000 0.00 0.00 0.00 3.36
6126 7284 1.842381 AAGGAAGGGCACGGAAGGAG 61.842 60.000 0.00 0.00 0.00 3.69
6127 7285 2.291043 GGAAGGGCACGGAAGGAGA 61.291 63.158 0.00 0.00 0.00 3.71
6128 7286 1.677552 GAAGGGCACGGAAGGAGAA 59.322 57.895 0.00 0.00 0.00 2.87
6129 7287 0.673956 GAAGGGCACGGAAGGAGAAC 60.674 60.000 0.00 0.00 0.00 3.01
6130 7288 1.415672 AAGGGCACGGAAGGAGAACA 61.416 55.000 0.00 0.00 0.00 3.18
6131 7289 1.201429 AGGGCACGGAAGGAGAACAT 61.201 55.000 0.00 0.00 0.00 2.71
6132 7290 0.744771 GGGCACGGAAGGAGAACATC 60.745 60.000 0.00 0.00 0.00 3.06
6133 7291 0.036388 GGCACGGAAGGAGAACATCA 60.036 55.000 0.00 0.00 0.00 3.07
6134 7292 1.610624 GGCACGGAAGGAGAACATCAA 60.611 52.381 0.00 0.00 0.00 2.57
6135 7293 1.734465 GCACGGAAGGAGAACATCAAG 59.266 52.381 0.00 0.00 0.00 3.02
6136 7294 1.734465 CACGGAAGGAGAACATCAAGC 59.266 52.381 0.00 0.00 0.00 4.01
6137 7295 1.002366 CGGAAGGAGAACATCAAGCG 58.998 55.000 0.00 0.00 0.00 4.68
6138 7296 1.673033 CGGAAGGAGAACATCAAGCGT 60.673 52.381 0.00 0.00 0.00 5.07
6139 7297 2.003301 GGAAGGAGAACATCAAGCGTC 58.997 52.381 0.00 0.00 0.00 5.19
6140 7298 1.656095 GAAGGAGAACATCAAGCGTCG 59.344 52.381 0.00 0.00 0.00 5.12
6141 7299 0.888619 AGGAGAACATCAAGCGTCGA 59.111 50.000 0.00 0.00 0.00 4.20
6142 7300 1.135257 AGGAGAACATCAAGCGTCGAG 60.135 52.381 0.00 0.00 0.00 4.04
6143 7301 1.402984 GGAGAACATCAAGCGTCGAGT 60.403 52.381 0.00 0.00 0.00 4.18
6144 7302 2.329379 GAGAACATCAAGCGTCGAGTT 58.671 47.619 0.00 0.00 0.00 3.01
6145 7303 2.329379 AGAACATCAAGCGTCGAGTTC 58.671 47.619 0.00 0.00 36.52 3.01
6146 7304 2.058798 GAACATCAAGCGTCGAGTTCA 58.941 47.619 0.00 0.00 36.35 3.18
6147 7305 2.148916 ACATCAAGCGTCGAGTTCAA 57.851 45.000 0.00 0.00 0.00 2.69
6148 7306 1.792949 ACATCAAGCGTCGAGTTCAAC 59.207 47.619 0.00 0.00 0.00 3.18
6149 7307 1.126846 CATCAAGCGTCGAGTTCAACC 59.873 52.381 0.00 0.00 0.00 3.77
6150 7308 0.387929 TCAAGCGTCGAGTTCAACCT 59.612 50.000 0.00 0.00 0.00 3.50
6151 7309 0.784778 CAAGCGTCGAGTTCAACCTC 59.215 55.000 0.00 0.00 0.00 3.85
6152 7310 0.319641 AAGCGTCGAGTTCAACCTCC 60.320 55.000 0.00 0.00 0.00 4.30
6153 7311 2.087009 GCGTCGAGTTCAACCTCCG 61.087 63.158 0.00 0.00 0.00 4.63
6154 7312 1.443872 CGTCGAGTTCAACCTCCGG 60.444 63.158 0.00 0.00 0.00 5.14
6155 7313 1.737008 GTCGAGTTCAACCTCCGGC 60.737 63.158 0.00 0.00 0.00 6.13
6156 7314 2.809601 CGAGTTCAACCTCCGGCG 60.810 66.667 0.00 0.00 0.00 6.46
6157 7315 2.434359 GAGTTCAACCTCCGGCGG 60.434 66.667 22.51 22.51 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.430765 GCGCTTCCCGAGGTCGAA 62.431 66.667 0.00 0.00 43.02 3.71
3 4 4.856607 CTCGCGCTTCCCGAGGTC 62.857 72.222 5.56 0.00 46.15 3.85
15 16 1.397190 CCAAAATATAGTGCGCTCGCG 60.397 52.381 9.73 6.98 45.51 5.87
16 17 1.864711 TCCAAAATATAGTGCGCTCGC 59.135 47.619 9.73 7.38 42.35 5.03
17 18 4.457810 CATTCCAAAATATAGTGCGCTCG 58.542 43.478 9.73 0.00 0.00 5.03
18 19 4.515191 TCCATTCCAAAATATAGTGCGCTC 59.485 41.667 9.73 4.74 0.00 5.03
19 20 4.460263 TCCATTCCAAAATATAGTGCGCT 58.540 39.130 9.73 4.58 0.00 5.92
20 21 4.320494 CCTCCATTCCAAAATATAGTGCGC 60.320 45.833 0.00 0.00 0.00 6.09
21 22 4.216257 CCCTCCATTCCAAAATATAGTGCG 59.784 45.833 0.00 0.00 0.00 5.34
22 23 5.385198 TCCCTCCATTCCAAAATATAGTGC 58.615 41.667 0.00 0.00 0.00 4.40
23 24 6.605119 ACTCCCTCCATTCCAAAATATAGTG 58.395 40.000 0.00 0.00 0.00 2.74
24 25 6.848562 ACTCCCTCCATTCCAAAATATAGT 57.151 37.500 0.00 0.00 0.00 2.12
27 28 9.981460 GATAATACTCCCTCCATTCCAAAATAT 57.019 33.333 0.00 0.00 0.00 1.28
28 29 9.182642 AGATAATACTCCCTCCATTCCAAAATA 57.817 33.333 0.00 0.00 0.00 1.40
29 30 8.061890 AGATAATACTCCCTCCATTCCAAAAT 57.938 34.615 0.00 0.00 0.00 1.82
30 31 7.465900 AGATAATACTCCCTCCATTCCAAAA 57.534 36.000 0.00 0.00 0.00 2.44
31 32 8.757307 ATAGATAATACTCCCTCCATTCCAAA 57.243 34.615 0.00 0.00 0.00 3.28
32 33 9.494055 CTATAGATAATACTCCCTCCATTCCAA 57.506 37.037 0.00 0.00 0.00 3.53
33 34 7.565398 GCTATAGATAATACTCCCTCCATTCCA 59.435 40.741 3.21 0.00 0.00 3.53
34 35 7.015779 GGCTATAGATAATACTCCCTCCATTCC 59.984 44.444 3.21 0.00 0.00 3.01
35 36 7.015779 GGGCTATAGATAATACTCCCTCCATTC 59.984 44.444 3.21 0.00 30.27 2.67
36 37 6.847036 GGGCTATAGATAATACTCCCTCCATT 59.153 42.308 3.21 0.00 30.27 3.16
37 38 6.164949 AGGGCTATAGATAATACTCCCTCCAT 59.835 42.308 3.21 0.00 34.94 3.41
38 39 5.500222 AGGGCTATAGATAATACTCCCTCCA 59.500 44.000 3.21 0.00 34.94 3.86
39 40 6.033203 AGGGCTATAGATAATACTCCCTCC 57.967 45.833 3.21 0.00 34.94 4.30
40 41 7.981475 AAAGGGCTATAGATAATACTCCCTC 57.019 40.000 3.21 0.00 37.22 4.30
41 42 7.403522 GGAAAAGGGCTATAGATAATACTCCCT 59.596 40.741 3.21 4.23 38.71 4.20
42 43 7.403522 AGGAAAAGGGCTATAGATAATACTCCC 59.596 40.741 3.21 1.74 31.88 4.30
43 44 8.382058 AGGAAAAGGGCTATAGATAATACTCC 57.618 38.462 3.21 0.92 0.00 3.85
49 50 9.310449 CACTACTAGGAAAAGGGCTATAGATAA 57.690 37.037 3.21 0.00 0.00 1.75
50 51 8.676020 TCACTACTAGGAAAAGGGCTATAGATA 58.324 37.037 3.21 0.00 0.00 1.98
51 52 7.536625 TCACTACTAGGAAAAGGGCTATAGAT 58.463 38.462 3.21 0.00 0.00 1.98
52 53 6.919158 TCACTACTAGGAAAAGGGCTATAGA 58.081 40.000 3.21 0.00 0.00 1.98
53 54 6.209788 CCTCACTACTAGGAAAAGGGCTATAG 59.790 46.154 0.00 0.00 36.08 1.31
54 55 6.075984 CCTCACTACTAGGAAAAGGGCTATA 58.924 44.000 0.00 0.00 36.08 1.31
55 56 4.902448 CCTCACTACTAGGAAAAGGGCTAT 59.098 45.833 0.00 0.00 36.08 2.97
56 57 4.016851 TCCTCACTACTAGGAAAAGGGCTA 60.017 45.833 0.00 0.00 40.23 3.93
57 58 3.108376 CCTCACTACTAGGAAAAGGGCT 58.892 50.000 0.00 0.00 36.08 5.19
58 59 3.105283 TCCTCACTACTAGGAAAAGGGC 58.895 50.000 0.00 0.00 40.23 5.19
59 60 3.133183 GCTCCTCACTACTAGGAAAAGGG 59.867 52.174 0.00 0.00 42.56 3.95
60 61 3.133183 GGCTCCTCACTACTAGGAAAAGG 59.867 52.174 0.00 0.00 42.56 3.11
61 62 4.027437 AGGCTCCTCACTACTAGGAAAAG 58.973 47.826 0.00 0.00 42.56 2.27
62 63 4.062490 AGGCTCCTCACTACTAGGAAAA 57.938 45.455 0.00 0.00 42.56 2.29
63 64 3.759815 AGGCTCCTCACTACTAGGAAA 57.240 47.619 0.00 0.00 42.56 3.13
64 65 3.245658 ACAAGGCTCCTCACTACTAGGAA 60.246 47.826 0.00 0.00 42.56 3.36
65 66 2.312140 ACAAGGCTCCTCACTACTAGGA 59.688 50.000 0.00 0.00 40.92 2.94
66 67 2.741145 ACAAGGCTCCTCACTACTAGG 58.259 52.381 0.00 0.00 35.26 3.02
67 68 3.677424 GCAACAAGGCTCCTCACTACTAG 60.677 52.174 0.00 0.00 0.00 2.57
68 69 2.233922 GCAACAAGGCTCCTCACTACTA 59.766 50.000 0.00 0.00 0.00 1.82
69 70 1.002544 GCAACAAGGCTCCTCACTACT 59.997 52.381 0.00 0.00 0.00 2.57
70 71 1.443802 GCAACAAGGCTCCTCACTAC 58.556 55.000 0.00 0.00 0.00 2.73
71 72 0.324943 GGCAACAAGGCTCCTCACTA 59.675 55.000 0.00 0.00 40.24 2.74
72 73 1.073897 GGCAACAAGGCTCCTCACT 59.926 57.895 0.00 0.00 40.24 3.41
73 74 2.328099 CGGCAACAAGGCTCCTCAC 61.328 63.158 0.00 0.00 41.46 3.51
74 75 2.032528 CGGCAACAAGGCTCCTCA 59.967 61.111 0.00 0.00 41.46 3.86
75 76 2.032681 ACGGCAACAAGGCTCCTC 59.967 61.111 0.00 0.00 41.46 3.71
89 90 1.658717 GACGAGATGCGGATGACGG 60.659 63.158 14.36 0.00 46.49 4.79
95 96 2.748647 TGGTCGACGAGATGCGGA 60.749 61.111 9.92 0.00 46.49 5.54
103 104 2.338620 CAAGCTGGTGGTCGACGA 59.661 61.111 9.92 1.86 0.00 4.20
117 118 4.899239 CTCCCTAGCGGCGGCAAG 62.899 72.222 19.21 6.15 43.41 4.01
138 139 1.176619 TGGACGAACTCGAAGCTCCA 61.177 55.000 6.05 5.65 43.02 3.86
144 145 1.883926 TCAGATGTGGACGAACTCGAA 59.116 47.619 6.05 0.00 43.02 3.71
151 152 1.934220 GACGGCTCAGATGTGGACGA 61.934 60.000 12.40 0.00 0.00 4.20
185 186 1.665599 TCGGAAAGTCGCGGGAAAC 60.666 57.895 6.13 0.00 0.00 2.78
197 198 1.180456 TGGTGCTAGGTCGTCGGAAA 61.180 55.000 0.00 0.00 0.00 3.13
204 205 0.179100 CTCACCATGGTGCTAGGTCG 60.179 60.000 35.73 13.68 45.04 4.79
211 212 0.745845 ATCGAAGCTCACCATGGTGC 60.746 55.000 35.73 26.52 45.04 5.01
230 231 0.974010 ATCGGACGGCTAGGGTTTCA 60.974 55.000 0.00 0.00 0.00 2.69
231 232 0.249363 GATCGGACGGCTAGGGTTTC 60.249 60.000 0.00 0.00 0.00 2.78
243 244 1.012841 ACGTTAGGTCGAGATCGGAC 58.987 55.000 10.43 10.43 40.29 4.79
246 247 2.539346 AACACGTTAGGTCGAGATCG 57.461 50.000 0.00 0.00 41.45 3.69
252 253 6.632035 GTGATCTAATCTAACACGTTAGGTCG 59.368 42.308 15.18 5.46 42.03 4.79
289 290 4.870221 ACGGCCAAAATCTAAACGTATC 57.130 40.909 2.24 0.00 0.00 2.24
318 319 0.464916 AAGACGGAACCGCCAGTTTT 60.465 50.000 13.32 0.00 44.19 2.43
319 320 0.393820 TAAGACGGAACCGCCAGTTT 59.606 50.000 13.32 3.89 44.19 2.66
326 327 6.897259 TCAAAATAGATTAAGACGGAACCG 57.103 37.500 11.83 11.83 46.03 4.44
331 332 9.931210 GTACCAATTCAAAATAGATTAAGACGG 57.069 33.333 0.00 0.00 0.00 4.79
335 336 9.931210 GTCGGTACCAATTCAAAATAGATTAAG 57.069 33.333 13.54 0.00 0.00 1.85
341 342 6.411630 TTCGTCGGTACCAATTCAAAATAG 57.588 37.500 13.54 0.00 0.00 1.73
376 377 2.653726 TCGGATAAGGTTGGCTACGTA 58.346 47.619 0.00 0.00 0.00 3.57
429 430 7.043391 GGTCTTTTCTGCAAAATTGTCAGTTAC 60.043 37.037 13.43 8.31 35.39 2.50
439 440 6.071320 AGTTCTAGGGTCTTTTCTGCAAAAT 58.929 36.000 0.00 0.00 30.91 1.82
502 505 7.011389 AGCTTCATTTTGCTAAAAGTTTCAACC 59.989 33.333 0.00 0.00 37.81 3.77
504 507 8.491331 AAGCTTCATTTTGCTAAAAGTTTCAA 57.509 26.923 0.00 0.00 38.75 2.69
515 518 8.588472 AGTTTATTTCCTAAGCTTCATTTTGCT 58.412 29.630 0.00 0.00 41.82 3.91
533 536 1.471287 GCCGCCGGAGAAAGTTTATTT 59.529 47.619 7.68 0.00 0.00 1.40
571 574 5.521735 CGATTCTCTATGTTGCTACAAGCTT 59.478 40.000 4.79 0.00 42.97 3.74
572 575 5.046529 CGATTCTCTATGTTGCTACAAGCT 58.953 41.667 4.79 0.00 42.97 3.74
573 576 4.806247 ACGATTCTCTATGTTGCTACAAGC 59.194 41.667 4.79 0.00 42.82 4.01
574 577 7.168302 CCTTACGATTCTCTATGTTGCTACAAG 59.832 40.741 4.79 4.83 37.91 3.16
577 580 6.637658 GTCCTTACGATTCTCTATGTTGCTAC 59.362 42.308 0.00 0.00 0.00 3.58
578 581 6.238953 GGTCCTTACGATTCTCTATGTTGCTA 60.239 42.308 0.00 0.00 0.00 3.49
580 583 4.745620 GGTCCTTACGATTCTCTATGTTGC 59.254 45.833 0.00 0.00 0.00 4.17
581 584 5.980116 CAGGTCCTTACGATTCTCTATGTTG 59.020 44.000 0.00 0.00 0.00 3.33
582 585 5.892119 TCAGGTCCTTACGATTCTCTATGTT 59.108 40.000 0.00 0.00 0.00 2.71
583 586 5.446860 TCAGGTCCTTACGATTCTCTATGT 58.553 41.667 0.00 0.00 0.00 2.29
584 587 6.392625 TTCAGGTCCTTACGATTCTCTATG 57.607 41.667 0.00 0.00 0.00 2.23
585 588 6.551601 ACATTCAGGTCCTTACGATTCTCTAT 59.448 38.462 0.00 0.00 0.00 1.98
586 589 5.892119 ACATTCAGGTCCTTACGATTCTCTA 59.108 40.000 0.00 0.00 0.00 2.43
587 590 4.712337 ACATTCAGGTCCTTACGATTCTCT 59.288 41.667 0.00 0.00 0.00 3.10
588 591 5.012328 ACATTCAGGTCCTTACGATTCTC 57.988 43.478 0.00 0.00 0.00 2.87
589 592 6.732896 ATACATTCAGGTCCTTACGATTCT 57.267 37.500 0.00 0.00 0.00 2.40
590 593 8.142551 AGTAATACATTCAGGTCCTTACGATTC 58.857 37.037 0.00 0.00 30.44 2.52
591 594 8.019656 AGTAATACATTCAGGTCCTTACGATT 57.980 34.615 0.00 0.00 30.44 3.34
592 595 7.598759 AGTAATACATTCAGGTCCTTACGAT 57.401 36.000 0.00 0.00 30.44 3.73
593 596 7.776969 ACTAGTAATACATTCAGGTCCTTACGA 59.223 37.037 0.00 0.00 30.44 3.43
594 597 7.938715 ACTAGTAATACATTCAGGTCCTTACG 58.061 38.462 0.00 0.00 30.44 3.18
837 844 1.524008 GCCCCGTTCTTGACTTTGGG 61.524 60.000 0.00 0.00 36.37 4.12
863 871 2.025155 TGGAAAGCTAGTCTCCGCTAG 58.975 52.381 0.00 0.00 40.91 3.42
864 872 1.749634 GTGGAAAGCTAGTCTCCGCTA 59.250 52.381 11.15 0.00 36.90 4.26
964 975 0.608035 CAAGGACCAAGCCCGCTTTA 60.608 55.000 0.00 0.00 33.42 1.85
965 976 1.903404 CAAGGACCAAGCCCGCTTT 60.903 57.895 0.00 0.00 33.42 3.51
966 977 2.282462 CAAGGACCAAGCCCGCTT 60.282 61.111 0.00 0.00 36.60 4.68
979 990 1.856629 ATGCCCTGATTGAACCAAGG 58.143 50.000 0.00 0.00 0.00 3.61
1051 1071 3.204526 ACTTCTTCTCTGCTGCATATGC 58.795 45.455 21.09 21.09 42.50 3.14
1080 1115 4.201910 GGACTCAAGAGAAGACGAGATGAG 60.202 50.000 3.73 0.00 38.91 2.90
1096 1131 2.813754 CTGGCGATTTTTCTGGACTCAA 59.186 45.455 0.00 0.00 0.00 3.02
1135 1179 1.072331 GGTGACCAACAGTGAGGTGAT 59.928 52.381 15.09 0.00 36.95 3.06
1158 1211 2.095059 CAGGATTTCTGCAAGGAAACCG 60.095 50.000 3.47 2.43 33.17 4.44
1308 1361 1.134965 GCTGGCATGAAGTAGTCGTCT 60.135 52.381 0.00 0.00 0.00 4.18
1316 1369 1.604593 GTGGTGGCTGGCATGAAGT 60.605 57.895 7.33 0.00 0.00 3.01
1317 1370 2.345760 GGTGGTGGCTGGCATGAAG 61.346 63.158 7.33 0.00 0.00 3.02
1318 1371 2.283101 GGTGGTGGCTGGCATGAA 60.283 61.111 7.33 0.00 0.00 2.57
1319 1372 3.578286 TGGTGGTGGCTGGCATGA 61.578 61.111 7.33 0.00 0.00 3.07
1320 1373 3.376078 GTGGTGGTGGCTGGCATG 61.376 66.667 7.33 0.00 0.00 4.06
1325 1378 1.600636 AATGTCGTGGTGGTGGCTG 60.601 57.895 0.00 0.00 0.00 4.85
1326 1379 1.600636 CAATGTCGTGGTGGTGGCT 60.601 57.895 0.00 0.00 0.00 4.75
1327 1380 1.852067 GACAATGTCGTGGTGGTGGC 61.852 60.000 0.00 0.00 0.00 5.01
1328 1381 0.250295 AGACAATGTCGTGGTGGTGG 60.250 55.000 7.83 0.00 37.67 4.61
1329 1382 1.531149 GAAGACAATGTCGTGGTGGTG 59.469 52.381 6.55 0.00 37.67 4.17
1330 1383 1.872237 CGAAGACAATGTCGTGGTGGT 60.872 52.381 6.55 0.00 37.67 4.16
1342 1395 0.679505 CCCTCTGTCCACGAAGACAA 59.320 55.000 12.14 4.80 45.77 3.18
1347 1400 2.099652 CTGTGCCCTCTGTCCACGAA 62.100 60.000 0.00 0.00 32.32 3.85
1416 1469 3.692406 GGGAGGTCGAGTGCGGTT 61.692 66.667 0.00 0.00 38.28 4.44
1453 1506 0.543174 AGAGAAGGGTGAAGTCCGCT 60.543 55.000 0.00 0.00 0.00 5.52
1457 1510 3.056179 CCTGAAGAGAGAAGGGTGAAGTC 60.056 52.174 0.00 0.00 0.00 3.01
1458 1511 2.903135 CCTGAAGAGAGAAGGGTGAAGT 59.097 50.000 0.00 0.00 0.00 3.01
1511 1564 2.173782 TGGGAGCTGGTAAACTTGTTGA 59.826 45.455 0.00 0.00 0.00 3.18
1864 1965 6.409005 CCAAGATCAATCACTGATAGGGAGTT 60.409 42.308 0.00 0.00 45.23 3.01
1875 1976 9.965902 AAAGAGTTATAACCAAGATCAATCACT 57.034 29.630 12.05 0.00 0.00 3.41
1975 2076 2.093658 GGAATGTTCCAGGCTCGAAGTA 60.094 50.000 6.91 0.00 46.76 2.24
2045 2146 2.561037 GCCCCAACGAGGTTTGTGG 61.561 63.158 0.00 0.00 34.66 4.17
2108 2209 1.648467 GAAGCTGTTCCCACCGATGC 61.648 60.000 0.00 0.00 0.00 3.91
2186 2287 0.890996 CCCAGACAAACCAGAGCACC 60.891 60.000 0.00 0.00 0.00 5.01
2188 2289 0.843309 TTCCCAGACAAACCAGAGCA 59.157 50.000 0.00 0.00 0.00 4.26
2309 2439 4.763073 TGTTTACAGAGGAGCAGATGATG 58.237 43.478 0.00 0.00 0.00 3.07
2422 2797 2.684881 GTGATGTGCCTAAGAACATGGG 59.315 50.000 0.00 0.00 37.15 4.00
2631 3351 0.321671 CGGGCTCTCCAGTCAAAGAA 59.678 55.000 0.00 0.00 34.36 2.52
2639 3359 4.463879 CCTGCACGGGCTCTCCAG 62.464 72.222 12.74 0.00 41.91 3.86
2766 3493 3.503748 GCAGGCTGGGTGTAATTGATATC 59.496 47.826 17.64 0.00 0.00 1.63
2782 3509 0.178981 ACATCTTGTTGGTGCAGGCT 60.179 50.000 0.00 0.00 0.00 4.58
2784 3511 0.883833 GGACATCTTGTTGGTGCAGG 59.116 55.000 0.00 0.00 0.00 4.85
2788 3517 2.163010 GCATCTGGACATCTTGTTGGTG 59.837 50.000 0.00 0.00 0.00 4.17
3117 3875 6.655062 TCTTAATTTGCAGTAACTTGTCACG 58.345 36.000 0.00 0.00 0.00 4.35
3118 3876 8.850454 TTTCTTAATTTGCAGTAACTTGTCAC 57.150 30.769 0.00 0.00 0.00 3.67
3540 4624 6.702449 AATGGGTTGTAGGATGCTGATATA 57.298 37.500 0.00 0.00 0.00 0.86
3555 4639 4.216257 CCGGAAGCAGATAATAATGGGTTG 59.784 45.833 0.00 0.00 0.00 3.77
3564 4648 1.352352 CCATCCCCGGAAGCAGATAAT 59.648 52.381 0.73 0.00 0.00 1.28
3623 4707 5.104900 AGGTTACAGTATGCTAGAAACAGGG 60.105 44.000 0.00 0.00 42.53 4.45
3629 4713 7.553334 CCTTGTTAGGTTACAGTATGCTAGAA 58.447 38.462 0.00 0.00 36.70 2.10
3657 4741 4.838986 GGTAGATATCTAACAGCAAGGGGA 59.161 45.833 20.79 0.00 36.21 4.81
3762 4846 3.199946 TGAAGTGGTTGTGAGAGAGGTTT 59.800 43.478 0.00 0.00 0.00 3.27
3873 4960 3.999001 AGTAGTCAAGATCGTACACGTCA 59.001 43.478 1.19 0.00 40.80 4.35
3999 5116 4.021807 TGGTGCTTACGACATTCTGAGTAA 60.022 41.667 0.00 0.00 0.00 2.24
4047 5167 3.355378 CAACCCACTGAGATTATTGCCA 58.645 45.455 0.00 0.00 0.00 4.92
4183 5303 5.531287 GGATGTGGTTCCCATGTAAATCTAC 59.469 44.000 0.00 0.00 35.28 2.59
4525 5648 1.935873 AGCTTGCGCATACACTGTATG 59.064 47.619 20.70 20.70 39.10 2.39
4683 5812 2.995466 CGTGAAGGTACGTGAGGTTA 57.005 50.000 0.00 0.00 39.13 2.85
5034 6163 6.755141 GCCATAACATGATATCATCAAATGGC 59.245 38.462 33.14 33.14 46.13 4.40
5345 6491 4.708726 AGCATGTACAAAATGAAGAGCC 57.291 40.909 0.00 0.00 0.00 4.70
5351 6497 6.644592 GCTTGGTTTTAGCATGTACAAAATGA 59.355 34.615 0.00 0.00 38.51 2.57
5467 6625 4.766375 TGGTTATCTCTTTCTTTAGCCGG 58.234 43.478 0.00 0.00 0.00 6.13
5468 6626 5.817816 ACATGGTTATCTCTTTCTTTAGCCG 59.182 40.000 0.00 0.00 0.00 5.52
5469 6627 8.732746 TTACATGGTTATCTCTTTCTTTAGCC 57.267 34.615 0.00 0.00 0.00 3.93
5537 6695 7.667219 ACCCAAATCATATGGATATGTGAGTTC 59.333 37.037 2.13 0.00 39.58 3.01
6008 7166 4.326413 TGAGCGAGAATGATGTTTTTCG 57.674 40.909 0.00 0.00 0.00 3.46
6009 7167 6.373779 TCTTTGAGCGAGAATGATGTTTTTC 58.626 36.000 0.00 0.00 0.00 2.29
6010 7168 6.317789 TCTTTGAGCGAGAATGATGTTTTT 57.682 33.333 0.00 0.00 0.00 1.94
6011 7169 5.947228 TCTTTGAGCGAGAATGATGTTTT 57.053 34.783 0.00 0.00 0.00 2.43
6012 7170 5.947228 TTCTTTGAGCGAGAATGATGTTT 57.053 34.783 0.00 0.00 0.00 2.83
6013 7171 5.239306 TGTTTCTTTGAGCGAGAATGATGTT 59.761 36.000 0.00 0.00 33.48 2.71
6014 7172 4.756642 TGTTTCTTTGAGCGAGAATGATGT 59.243 37.500 0.00 0.00 33.48 3.06
6015 7173 5.287170 TGTTTCTTTGAGCGAGAATGATG 57.713 39.130 0.00 0.00 33.48 3.07
6016 7174 5.239306 TGTTGTTTCTTTGAGCGAGAATGAT 59.761 36.000 0.00 0.00 33.48 2.45
6017 7175 4.574421 TGTTGTTTCTTTGAGCGAGAATGA 59.426 37.500 0.00 0.00 33.48 2.57
6018 7176 4.847633 TGTTGTTTCTTTGAGCGAGAATG 58.152 39.130 0.00 0.00 33.48 2.67
6019 7177 5.499139 TTGTTGTTTCTTTGAGCGAGAAT 57.501 34.783 0.00 0.00 33.48 2.40
6020 7178 4.955925 TTGTTGTTTCTTTGAGCGAGAA 57.044 36.364 0.00 0.00 0.00 2.87
6021 7179 4.438200 GGTTTGTTGTTTCTTTGAGCGAGA 60.438 41.667 0.00 0.00 0.00 4.04
6022 7180 3.791353 GGTTTGTTGTTTCTTTGAGCGAG 59.209 43.478 0.00 0.00 0.00 5.03
6023 7181 3.191581 TGGTTTGTTGTTTCTTTGAGCGA 59.808 39.130 0.00 0.00 0.00 4.93
6024 7182 3.506810 TGGTTTGTTGTTTCTTTGAGCG 58.493 40.909 0.00 0.00 0.00 5.03
6025 7183 4.562789 GTCTGGTTTGTTGTTTCTTTGAGC 59.437 41.667 0.00 0.00 0.00 4.26
6026 7184 5.954335 AGTCTGGTTTGTTGTTTCTTTGAG 58.046 37.500 0.00 0.00 0.00 3.02
6027 7185 5.391523 CGAGTCTGGTTTGTTGTTTCTTTGA 60.392 40.000 0.00 0.00 0.00 2.69
6028 7186 4.793216 CGAGTCTGGTTTGTTGTTTCTTTG 59.207 41.667 0.00 0.00 0.00 2.77
6029 7187 4.142469 CCGAGTCTGGTTTGTTGTTTCTTT 60.142 41.667 0.00 0.00 0.00 2.52
6030 7188 3.377172 CCGAGTCTGGTTTGTTGTTTCTT 59.623 43.478 0.00 0.00 0.00 2.52
6031 7189 2.943033 CCGAGTCTGGTTTGTTGTTTCT 59.057 45.455 0.00 0.00 0.00 2.52
6032 7190 2.681344 ACCGAGTCTGGTTTGTTGTTTC 59.319 45.455 1.41 0.00 39.99 2.78
6033 7191 2.422127 CACCGAGTCTGGTTTGTTGTTT 59.578 45.455 4.22 0.00 41.38 2.83
6034 7192 2.014128 CACCGAGTCTGGTTTGTTGTT 58.986 47.619 4.22 0.00 41.38 2.83
6035 7193 1.663695 CACCGAGTCTGGTTTGTTGT 58.336 50.000 4.22 0.00 41.38 3.32
6036 7194 0.307760 GCACCGAGTCTGGTTTGTTG 59.692 55.000 4.22 0.00 41.38 3.33
6037 7195 0.818040 GGCACCGAGTCTGGTTTGTT 60.818 55.000 4.22 0.00 41.38 2.83
6038 7196 1.227853 GGCACCGAGTCTGGTTTGT 60.228 57.895 4.22 0.00 41.38 2.83
6039 7197 1.227823 TGGCACCGAGTCTGGTTTG 60.228 57.895 4.22 0.00 41.38 2.93
6040 7198 1.227853 GTGGCACCGAGTCTGGTTT 60.228 57.895 6.29 0.00 41.38 3.27
6041 7199 2.383245 CTGTGGCACCGAGTCTGGTT 62.383 60.000 16.26 0.00 41.38 3.67
6042 7200 2.842462 TGTGGCACCGAGTCTGGT 60.842 61.111 16.26 1.41 45.21 4.00
6043 7201 2.047844 CTGTGGCACCGAGTCTGG 60.048 66.667 16.26 0.23 0.00 3.86
6044 7202 0.946221 GAACTGTGGCACCGAGTCTG 60.946 60.000 16.26 0.00 0.00 3.51
6045 7203 1.367840 GAACTGTGGCACCGAGTCT 59.632 57.895 16.26 4.16 0.00 3.24
6046 7204 2.022129 CGAACTGTGGCACCGAGTC 61.022 63.158 16.26 10.67 0.00 3.36
6047 7205 2.029073 CGAACTGTGGCACCGAGT 59.971 61.111 16.26 10.09 0.00 4.18
6048 7206 2.738521 CCGAACTGTGGCACCGAG 60.739 66.667 16.26 9.37 0.00 4.63
6055 7213 0.871722 TTTTGATCGCCGAACTGTGG 59.128 50.000 0.00 0.00 0.00 4.17
6056 7214 2.900122 ATTTTGATCGCCGAACTGTG 57.100 45.000 0.00 0.00 0.00 3.66
6057 7215 3.749088 TGTTATTTTGATCGCCGAACTGT 59.251 39.130 0.00 0.00 0.00 3.55
6058 7216 4.334443 CTGTTATTTTGATCGCCGAACTG 58.666 43.478 0.00 0.00 0.00 3.16
6059 7217 3.374058 CCTGTTATTTTGATCGCCGAACT 59.626 43.478 0.00 0.00 0.00 3.01
6060 7218 3.372822 TCCTGTTATTTTGATCGCCGAAC 59.627 43.478 0.00 0.00 0.00 3.95
6061 7219 3.372822 GTCCTGTTATTTTGATCGCCGAA 59.627 43.478 0.00 0.00 0.00 4.30
6062 7220 2.933906 GTCCTGTTATTTTGATCGCCGA 59.066 45.455 0.00 0.00 0.00 5.54
6063 7221 2.675844 TGTCCTGTTATTTTGATCGCCG 59.324 45.455 0.00 0.00 0.00 6.46
6064 7222 3.485216 CGTGTCCTGTTATTTTGATCGCC 60.485 47.826 0.00 0.00 0.00 5.54
6065 7223 3.670203 CGTGTCCTGTTATTTTGATCGC 58.330 45.455 0.00 0.00 0.00 4.58
6066 7224 3.124466 TGCGTGTCCTGTTATTTTGATCG 59.876 43.478 0.00 0.00 0.00 3.69
6067 7225 4.154195 ACTGCGTGTCCTGTTATTTTGATC 59.846 41.667 0.00 0.00 0.00 2.92
6068 7226 4.072131 ACTGCGTGTCCTGTTATTTTGAT 58.928 39.130 0.00 0.00 0.00 2.57
6069 7227 3.472652 ACTGCGTGTCCTGTTATTTTGA 58.527 40.909 0.00 0.00 0.00 2.69
6070 7228 3.896648 ACTGCGTGTCCTGTTATTTTG 57.103 42.857 0.00 0.00 0.00 2.44
6071 7229 4.638304 ACTACTGCGTGTCCTGTTATTTT 58.362 39.130 0.00 0.00 0.00 1.82
6072 7230 4.267349 ACTACTGCGTGTCCTGTTATTT 57.733 40.909 0.00 0.00 0.00 1.40
6073 7231 3.955650 ACTACTGCGTGTCCTGTTATT 57.044 42.857 0.00 0.00 0.00 1.40
6074 7232 3.672511 CGAACTACTGCGTGTCCTGTTAT 60.673 47.826 0.00 0.00 0.00 1.89
6075 7233 2.351060 CGAACTACTGCGTGTCCTGTTA 60.351 50.000 0.00 0.00 0.00 2.41
6076 7234 1.602165 CGAACTACTGCGTGTCCTGTT 60.602 52.381 0.00 0.00 0.00 3.16
6077 7235 0.039437 CGAACTACTGCGTGTCCTGT 60.039 55.000 0.00 0.00 0.00 4.00
6078 7236 0.732880 CCGAACTACTGCGTGTCCTG 60.733 60.000 0.00 0.00 0.00 3.86
6079 7237 1.585006 CCGAACTACTGCGTGTCCT 59.415 57.895 0.00 0.00 0.00 3.85
6080 7238 2.092882 GCCGAACTACTGCGTGTCC 61.093 63.158 0.00 0.00 0.00 4.02
6081 7239 2.434134 CGCCGAACTACTGCGTGTC 61.434 63.158 0.00 0.00 44.68 3.67
6082 7240 2.430244 CGCCGAACTACTGCGTGT 60.430 61.111 0.00 0.00 44.68 4.49
6086 7244 1.421382 TTTGTACGCCGAACTACTGC 58.579 50.000 0.00 0.00 0.00 4.40
6104 7262 1.328279 CTTCCGTGCCCTTCCTTTTT 58.672 50.000 0.00 0.00 0.00 1.94
6105 7263 0.539669 CCTTCCGTGCCCTTCCTTTT 60.540 55.000 0.00 0.00 0.00 2.27
6106 7264 1.074951 CCTTCCGTGCCCTTCCTTT 59.925 57.895 0.00 0.00 0.00 3.11
6107 7265 1.842381 CTCCTTCCGTGCCCTTCCTT 61.842 60.000 0.00 0.00 0.00 3.36
6108 7266 2.203938 TCCTTCCGTGCCCTTCCT 60.204 61.111 0.00 0.00 0.00 3.36
6109 7267 1.838073 TTCTCCTTCCGTGCCCTTCC 61.838 60.000 0.00 0.00 0.00 3.46
6110 7268 0.673956 GTTCTCCTTCCGTGCCCTTC 60.674 60.000 0.00 0.00 0.00 3.46
6111 7269 1.375326 GTTCTCCTTCCGTGCCCTT 59.625 57.895 0.00 0.00 0.00 3.95
6112 7270 1.201429 ATGTTCTCCTTCCGTGCCCT 61.201 55.000 0.00 0.00 0.00 5.19
6113 7271 0.744771 GATGTTCTCCTTCCGTGCCC 60.745 60.000 0.00 0.00 0.00 5.36
6114 7272 0.036388 TGATGTTCTCCTTCCGTGCC 60.036 55.000 0.00 0.00 0.00 5.01
6115 7273 1.734465 CTTGATGTTCTCCTTCCGTGC 59.266 52.381 0.00 0.00 0.00 5.34
6116 7274 1.734465 GCTTGATGTTCTCCTTCCGTG 59.266 52.381 0.00 0.00 0.00 4.94
6117 7275 1.673033 CGCTTGATGTTCTCCTTCCGT 60.673 52.381 0.00 0.00 0.00 4.69
6118 7276 1.002366 CGCTTGATGTTCTCCTTCCG 58.998 55.000 0.00 0.00 0.00 4.30
6119 7277 2.003301 GACGCTTGATGTTCTCCTTCC 58.997 52.381 0.00 0.00 0.00 3.46
6120 7278 1.656095 CGACGCTTGATGTTCTCCTTC 59.344 52.381 0.00 0.00 0.00 3.46
6121 7279 1.272490 TCGACGCTTGATGTTCTCCTT 59.728 47.619 0.00 0.00 0.00 3.36
6122 7280 0.888619 TCGACGCTTGATGTTCTCCT 59.111 50.000 0.00 0.00 0.00 3.69
6123 7281 1.272781 CTCGACGCTTGATGTTCTCC 58.727 55.000 0.00 0.00 0.00 3.71
6124 7282 1.983972 ACTCGACGCTTGATGTTCTC 58.016 50.000 0.00 0.00 0.00 2.87
6125 7283 2.288213 TGAACTCGACGCTTGATGTTCT 60.288 45.455 10.16 0.00 35.99 3.01
6126 7284 2.058798 TGAACTCGACGCTTGATGTTC 58.941 47.619 3.68 3.68 35.68 3.18
6127 7285 2.148916 TGAACTCGACGCTTGATGTT 57.851 45.000 0.00 0.00 0.00 2.71
6128 7286 1.792949 GTTGAACTCGACGCTTGATGT 59.207 47.619 0.00 0.00 0.00 3.06
6129 7287 1.126846 GGTTGAACTCGACGCTTGATG 59.873 52.381 0.00 0.00 0.00 3.07
6130 7288 1.000955 AGGTTGAACTCGACGCTTGAT 59.999 47.619 0.00 0.00 0.00 2.57
6131 7289 0.387929 AGGTTGAACTCGACGCTTGA 59.612 50.000 0.00 0.00 0.00 3.02
6132 7290 0.784778 GAGGTTGAACTCGACGCTTG 59.215 55.000 0.00 0.00 0.00 4.01
6133 7291 0.319641 GGAGGTTGAACTCGACGCTT 60.320 55.000 0.00 0.00 38.39 4.68
6134 7292 1.289380 GGAGGTTGAACTCGACGCT 59.711 57.895 0.00 0.00 38.39 5.07
6135 7293 2.087009 CGGAGGTTGAACTCGACGC 61.087 63.158 0.00 0.00 38.39 5.19
6136 7294 4.148230 CGGAGGTTGAACTCGACG 57.852 61.111 0.00 0.00 38.39 5.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.