Multiple sequence alignment - TraesCS6D01G333800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G333800 chr6D 100.000 5411 0 0 1 5411 436072908 436078318 0.000000e+00 9993.0
1 TraesCS6D01G333800 chr6D 83.498 1515 205 35 3195 4699 436093872 436095351 0.000000e+00 1371.0
2 TraesCS6D01G333800 chr6D 84.656 189 23 2 611 795 436090641 436090827 3.330000e-42 183.0
3 TraesCS6D01G333800 chr6A 93.972 3102 110 29 1477 4539 582998613 583001676 0.000000e+00 4621.0
4 TraesCS6D01G333800 chr6A 93.170 937 44 10 564 1489 582997458 582998385 0.000000e+00 1358.0
5 TraesCS6D01G333800 chr6A 83.014 1513 212 36 3195 4696 583010459 583011937 0.000000e+00 1328.0
6 TraesCS6D01G333800 chr6A 90.833 480 40 3 1 478 582996843 582997320 1.640000e-179 640.0
7 TraesCS6D01G333800 chr6A 90.289 381 14 8 5054 5411 583002177 583002557 1.360000e-130 477.0
8 TraesCS6D01G333800 chr6A 96.751 277 9 0 4698 4974 224094294 224094018 3.820000e-126 462.0
9 TraesCS6D01G333800 chr6B 82.972 1521 212 34 3195 4699 658713133 658714622 0.000000e+00 1330.0
10 TraesCS6D01G333800 chr6B 85.569 1282 160 22 3200 4472 658666334 658667599 0.000000e+00 1319.0
11 TraesCS6D01G333800 chr6B 85.090 778 106 8 2377 3150 658712347 658713118 0.000000e+00 785.0
12 TraesCS6D01G333800 chr6B 77.260 1394 225 65 1808 3149 658664960 658666313 0.000000e+00 734.0
13 TraesCS6D01G333800 chr6B 92.188 64 5 0 550 613 658663110 658663173 2.080000e-14 91.6
14 TraesCS6D01G333800 chr2A 98.195 277 5 0 4698 4974 649507229 649506953 8.150000e-133 484.0
15 TraesCS6D01G333800 chr2A 98.175 274 4 1 4702 4974 760300115 760300388 1.360000e-130 477.0
16 TraesCS6D01G333800 chr2A 85.227 88 13 0 5186 5273 206403580 206403493 2.080000e-14 91.6
17 TraesCS6D01G333800 chr7A 97.834 277 6 0 4698 4974 81792496 81792220 3.790000e-131 479.0
18 TraesCS6D01G333800 chr7A 80.833 120 21 2 19 136 709769624 709769743 5.770000e-15 93.5
19 TraesCS6D01G333800 chr3D 97.473 277 7 0 4698 4974 93488325 93488049 1.760000e-129 473.0
20 TraesCS6D01G333800 chr3D 97.473 277 6 1 4698 4974 582724912 582724637 6.340000e-129 472.0
21 TraesCS6D01G333800 chr7D 96.763 278 7 2 4698 4974 40716062 40715786 3.820000e-126 462.0
22 TraesCS6D01G333800 chr4B 95.668 277 12 0 4698 4974 650680780 650680504 3.850000e-121 446.0
23 TraesCS6D01G333800 chr3A 95.683 278 11 1 4697 4974 124550617 124550341 3.850000e-121 446.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G333800 chr6D 436072908 436078318 5410 False 9993.000000 9993 100.000000 1 5411 1 chr6D.!!$F1 5410
1 TraesCS6D01G333800 chr6D 436090641 436095351 4710 False 777.000000 1371 84.077000 611 4699 2 chr6D.!!$F2 4088
2 TraesCS6D01G333800 chr6A 582996843 583002557 5714 False 1774.000000 4621 92.066000 1 5411 4 chr6A.!!$F2 5410
3 TraesCS6D01G333800 chr6A 583010459 583011937 1478 False 1328.000000 1328 83.014000 3195 4696 1 chr6A.!!$F1 1501
4 TraesCS6D01G333800 chr6B 658712347 658714622 2275 False 1057.500000 1330 84.031000 2377 4699 2 chr6B.!!$F2 2322
5 TraesCS6D01G333800 chr6B 658663110 658667599 4489 False 714.866667 1319 85.005667 550 4472 3 chr6B.!!$F1 3922

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
432 435 0.033920 TCCGGCGATCATGGAAGATG 59.966 55.0 9.3 0.0 0.0 2.90 F
919 1070 0.476771 TTTCCACCCACCTTCAGACC 59.523 55.0 0.0 0.0 0.0 3.85 F
1764 3044 0.531657 TGCCATGCTGAAAAATCCGG 59.468 50.0 0.0 0.0 0.0 5.14 F
1766 3046 0.526096 CCATGCTGAAAAATCCGGCG 60.526 55.0 0.0 0.0 38.7 6.46 F
3008 4460 0.108615 CTCTTCACCACAGTAGGCCG 60.109 60.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1764 3044 0.232816 TTTCGCTACAAACCGAACGC 59.767 50.000 0.00 0.00 42.39 4.84 R
1766 3046 2.481185 TGGATTTCGCTACAAACCGAAC 59.519 45.455 0.00 0.00 42.39 3.95 R
3008 4460 1.164041 ATTAACATAGTGCGGCGGCC 61.164 55.000 14.25 9.54 38.85 6.13 R
3168 4623 3.823330 CCGGACCGTTCGAGGAGG 61.823 72.222 13.94 0.00 34.73 4.30 R
4785 6553 0.035739 TTAGTTGGTTGGACGAGCCC 59.964 55.000 0.00 0.00 34.97 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 3.181483 GCAAGATTTGGTGGGATTGCTAG 60.181 47.826 0.00 0.00 39.82 3.42
44 45 1.696097 GGATTGCTAGCCCCCGAAGA 61.696 60.000 13.29 0.00 0.00 2.87
48 49 2.041819 CTAGCCCCCGAAGACCCT 60.042 66.667 0.00 0.00 0.00 4.34
49 50 2.365105 TAGCCCCCGAAGACCCTG 60.365 66.667 0.00 0.00 0.00 4.45
56 57 0.324460 CCCGAAGACCCTGGACTAGT 60.324 60.000 0.00 0.00 0.00 2.57
71 72 1.133544 ACTAGTCTAACCCTAGCCCCG 60.134 57.143 0.00 0.00 36.23 5.73
74 75 0.177373 GTCTAACCCTAGCCCCGTTG 59.823 60.000 0.00 0.00 0.00 4.10
104 105 1.602377 GTGTCCCTTTCACTTTCACCG 59.398 52.381 0.00 0.00 33.59 4.94
108 109 0.865769 CCTTTCACTTTCACCGGACG 59.134 55.000 9.46 0.00 0.00 4.79
118 119 1.666872 CACCGGACGACCTTTGACC 60.667 63.158 9.46 0.00 0.00 4.02
129 130 3.304659 CGACCTTTGACCAATGGACTTTG 60.305 47.826 18.01 0.00 38.54 2.77
136 137 1.133513 ACCAATGGACTTTGCACCTGA 60.134 47.619 6.16 0.00 0.00 3.86
145 146 4.095483 GGACTTTGCACCTGATTGTGATAG 59.905 45.833 0.00 0.00 38.55 2.08
147 148 3.719268 TTGCACCTGATTGTGATAGGT 57.281 42.857 0.00 0.00 45.36 3.08
161 162 5.162637 TGTGATAGGTTAGCCCATAGGAAT 58.837 41.667 0.00 0.00 34.66 3.01
166 167 7.906736 TGATAGGTTAGCCCATAGGAATATTCT 59.093 37.037 14.95 4.36 34.66 2.40
197 198 5.690865 AGTTTGAGTCCAACCTATCACAAA 58.309 37.500 3.56 0.00 30.88 2.83
229 230 3.247033 CGAACCGTCGTAGATTCCC 57.753 57.895 0.00 0.00 42.53 3.97
246 247 2.187946 CCCTCTAAGTGCTGGCGG 59.812 66.667 0.00 0.00 0.00 6.13
264 265 5.367302 TGGCGGTAGTAACTTGTTTTTAGT 58.633 37.500 0.00 0.00 0.00 2.24
314 317 9.646427 GAGGTGCTCTAACATCTTTTATATAGG 57.354 37.037 0.00 0.00 28.80 2.57
325 328 9.726438 ACATCTTTTATATAGGAGTAATGCCAC 57.274 33.333 0.00 0.00 0.00 5.01
339 342 1.142748 GCCACATCCGAGGTCTCTG 59.857 63.158 0.00 0.00 0.00 3.35
344 347 0.820226 CATCCGAGGTCTCTGAAGCA 59.180 55.000 0.00 0.00 0.00 3.91
352 355 1.263776 GTCTCTGAAGCACATCGACG 58.736 55.000 0.00 0.00 0.00 5.12
366 369 2.502213 TCGACGTGATGTTGTGTCTT 57.498 45.000 0.00 0.00 33.33 3.01
371 374 4.547532 GACGTGATGTTGTGTCTTCTACT 58.452 43.478 0.00 0.00 0.00 2.57
387 390 5.780793 TCTTCTACTCTAGGTTTCAAGGCTT 59.219 40.000 0.00 0.00 0.00 4.35
390 393 4.917906 ACTCTAGGTTTCAAGGCTTCAT 57.082 40.909 0.00 0.00 0.00 2.57
412 415 2.268076 CCTTTTGTCCGGTGGGCAG 61.268 63.158 0.00 0.00 0.00 4.85
432 435 0.033920 TCCGGCGATCATGGAAGATG 59.966 55.000 9.30 0.00 0.00 2.90
464 467 2.223249 CGATGTAATTCGGCACAAAGGG 60.223 50.000 0.00 0.00 35.50 3.95
510 583 1.851304 TGTCCATTTCATTCCTGGGC 58.149 50.000 0.00 0.00 35.19 5.36
531 604 0.674534 GGGACGTCTCTTCTGTGTGT 59.325 55.000 16.46 0.00 0.00 3.72
536 609 1.261619 CGTCTCTTCTGTGTGTTTGCC 59.738 52.381 0.00 0.00 0.00 4.52
539 612 1.008538 CTTCTGTGTGTTTGCCGGC 60.009 57.895 22.73 22.73 0.00 6.13
679 810 8.493547 GTTGTCGTTTATACTTGACTAGCTTTT 58.506 33.333 0.00 0.00 32.64 2.27
680 811 8.014322 TGTCGTTTATACTTGACTAGCTTTTG 57.986 34.615 0.00 0.00 32.64 2.44
695 826 3.896122 GCTTTTGCCGTCAGTCAAATTA 58.104 40.909 0.00 0.00 40.15 1.40
743 876 1.802365 TCGAGTCGAAGTCACGAATGA 59.198 47.619 13.98 0.00 43.75 2.57
919 1070 0.476771 TTTCCACCCACCTTCAGACC 59.523 55.000 0.00 0.00 0.00 3.85
927 1087 4.164221 CACCCACCTTCAGACCTTATACAT 59.836 45.833 0.00 0.00 0.00 2.29
948 1108 7.469537 ACATATACATAGACAGGGAAGTAGC 57.530 40.000 0.00 0.00 0.00 3.58
952 1112 5.793030 ACATAGACAGGGAAGTAGCATAC 57.207 43.478 0.00 0.00 43.47 2.39
956 1116 4.290093 AGACAGGGAAGTAGCATACATGA 58.710 43.478 0.00 0.00 46.26 3.07
958 1118 4.770795 ACAGGGAAGTAGCATACATGAAC 58.229 43.478 0.00 0.00 46.26 3.18
959 1119 4.225042 ACAGGGAAGTAGCATACATGAACA 59.775 41.667 0.00 0.00 46.26 3.18
960 1120 5.104360 ACAGGGAAGTAGCATACATGAACAT 60.104 40.000 0.00 0.00 46.26 2.71
961 1121 5.237996 CAGGGAAGTAGCATACATGAACATG 59.762 44.000 12.43 12.43 46.26 3.21
964 1124 7.016563 AGGGAAGTAGCATACATGAACATGATA 59.983 37.037 19.56 9.66 46.26 2.15
965 1125 7.332926 GGGAAGTAGCATACATGAACATGATAG 59.667 40.741 19.56 10.08 46.26 2.08
966 1126 7.875041 GGAAGTAGCATACATGAACATGATAGT 59.125 37.037 19.56 3.38 46.26 2.12
967 1127 9.914131 GAAGTAGCATACATGAACATGATAGTA 57.086 33.333 19.56 4.05 46.26 1.82
1023 1192 1.132453 CCTCGCACGACTACTCATCAA 59.868 52.381 0.00 0.00 0.00 2.57
1041 1210 5.525745 TCATCAAACTTCGTTCTTGCTACAA 59.474 36.000 0.00 0.00 0.00 2.41
1059 1228 5.122396 GCTACAAGTGATGACCTTAGGTTTG 59.878 44.000 4.99 7.52 35.25 2.93
1080 1249 3.382865 TGCTTGTAGAGATCCAGCTACTG 59.617 47.826 15.05 10.68 38.21 2.74
1119 1303 3.755628 TCAGCAGACGCCGGTACC 61.756 66.667 1.90 0.16 39.83 3.34
1175 1359 1.228657 GCCGTGAAGCGTTTCCTCTT 61.229 55.000 9.65 0.00 39.32 2.85
1450 2397 7.868415 AGTATTTACTCCTCGATTTGTGATAGC 59.132 37.037 0.00 0.00 0.00 2.97
1456 2403 5.052481 TCCTCGATTTGTGATAGCAGAATG 58.948 41.667 0.00 0.00 40.87 2.67
1480 2489 6.609212 TGGCTAAATCATATGCCTACCAAAAA 59.391 34.615 0.00 0.00 45.11 1.94
1491 2740 4.407296 TGCCTACCAAAAATTGTGAAAGGT 59.593 37.500 5.89 0.00 0.00 3.50
1516 2765 1.076549 GTGGGCCTGTTGGATTCCA 59.923 57.895 4.53 0.00 34.57 3.53
1526 2775 4.581824 CCTGTTGGATTCCATATGTCCTTG 59.418 45.833 6.15 0.00 31.53 3.61
1538 2793 2.530460 TGTCCTTGGGCATATTGCTT 57.470 45.000 0.00 0.00 44.28 3.91
1551 2806 8.095792 TGGGCATATTGCTTTCAAATATTATGG 58.904 33.333 0.00 0.00 44.28 2.74
1602 2882 2.687935 ACCAAACGCCATGGATATGTTC 59.312 45.455 18.40 0.00 40.56 3.18
1606 2886 1.686587 ACGCCATGGATATGTTCTCGA 59.313 47.619 18.40 0.00 32.21 4.04
1608 2888 3.130633 CGCCATGGATATGTTCTCGAAA 58.869 45.455 18.40 0.00 32.21 3.46
1642 2922 5.385509 TCCTTAAGTAAGCATGGCAAAAC 57.614 39.130 0.97 0.00 32.02 2.43
1643 2923 4.219725 TCCTTAAGTAAGCATGGCAAAACC 59.780 41.667 0.97 0.00 33.52 3.27
1644 2924 4.220602 CCTTAAGTAAGCATGGCAAAACCT 59.779 41.667 0.97 0.00 33.85 3.50
1645 2925 3.665745 AAGTAAGCATGGCAAAACCTG 57.334 42.857 0.00 0.00 40.22 4.00
1646 2926 1.895131 AGTAAGCATGGCAAAACCTGG 59.105 47.619 0.00 0.00 40.22 4.45
1708 2988 5.508657 GCTTGCTGAAGGAAATTATCATCCC 60.509 44.000 0.00 0.00 36.31 3.85
1737 3017 5.049543 GCAAAATAATTTGTCAAGCCAAGCA 60.050 36.000 5.21 0.00 46.19 3.91
1747 3027 3.068560 TCAAGCCAAGCATTTGATTTGC 58.931 40.909 0.00 0.00 40.45 3.68
1763 3043 2.367030 TTGCCATGCTGAAAAATCCG 57.633 45.000 0.00 0.00 0.00 4.18
1764 3044 0.531657 TGCCATGCTGAAAAATCCGG 59.468 50.000 0.00 0.00 0.00 5.14
1766 3046 0.526096 CCATGCTGAAAAATCCGGCG 60.526 55.000 0.00 0.00 38.70 6.46
1780 3060 2.472934 GGCGTTCGGTTTGTAGCG 59.527 61.111 0.00 0.00 46.15 4.26
1829 3109 2.560981 CAAAAGGATGGCCGGTTTAACT 59.439 45.455 1.90 0.00 39.96 2.24
1878 3166 5.278061 AGGGTATCCTGAGCTTGTTACTTA 58.722 41.667 0.00 0.00 42.98 2.24
1879 3167 5.364157 AGGGTATCCTGAGCTTGTTACTTAG 59.636 44.000 0.00 0.00 42.98 2.18
1980 3281 3.444034 GGTGCCCTTCTCCATTTTCTTAC 59.556 47.826 0.00 0.00 0.00 2.34
2026 3331 5.542779 TGTGGGTAAATTTCCGGAAAATTG 58.457 37.500 31.47 0.00 44.88 2.32
2069 3489 5.076873 ACTCTGACCTATAGAAGAGCATCC 58.923 45.833 19.11 0.00 39.86 3.51
2083 3503 6.825721 AGAAGAGCATCCAGGTTTAAAGTATG 59.174 38.462 0.00 0.00 33.66 2.39
2086 3506 5.815581 AGCATCCAGGTTTAAAGTATGTCA 58.184 37.500 0.00 0.00 0.00 3.58
2087 3507 5.882557 AGCATCCAGGTTTAAAGTATGTCAG 59.117 40.000 0.00 0.00 0.00 3.51
2090 3510 5.815581 TCCAGGTTTAAAGTATGTCAGCAT 58.184 37.500 0.00 0.00 39.03 3.79
2120 3542 5.685728 AGAGTATTGGTCCTTAGGCATTTC 58.314 41.667 0.00 0.00 0.00 2.17
2325 3749 5.157067 GGTCTTCTTTTTGTTAGAGCATGC 58.843 41.667 10.51 10.51 35.72 4.06
2398 3847 9.449719 CCTTGTCTAACCAGTTTTATGACTAAT 57.550 33.333 0.00 0.00 0.00 1.73
2445 3894 4.503123 CCGGTTCCTCTTGATGCACATATA 60.503 45.833 0.00 0.00 0.00 0.86
2873 4325 2.246483 ACCTAACAAGGTTGCCCCA 58.754 52.632 0.00 0.00 39.57 4.96
2946 4398 5.252863 TCAAATTCAAGGGGAGATACCTCAA 59.747 40.000 0.00 0.00 42.78 3.02
3008 4460 0.108615 CTCTTCACCACAGTAGGCCG 60.109 60.000 0.00 0.00 0.00 6.13
3168 4623 2.100749 CCGCTTCATCCAAATAAACCCC 59.899 50.000 0.00 0.00 0.00 4.95
3394 4852 1.003839 GACGGAACATGGCCTGACA 60.004 57.895 3.32 0.00 0.00 3.58
3564 5022 1.974875 TCAGCTACCGCAACTCCGA 60.975 57.895 0.00 0.00 39.10 4.55
3568 5026 0.171903 GCTACCGCAACTCCGACTAA 59.828 55.000 0.00 0.00 35.78 2.24
3610 5068 3.092511 ATGGCCCCGTGAGCATCT 61.093 61.111 0.00 0.00 34.92 2.90
3940 5398 1.609061 CGAGGTCAATCAGCAACCTGT 60.609 52.381 0.00 0.00 43.43 4.00
4257 5715 0.601057 TGACTTCGCCATCTTCGTCA 59.399 50.000 0.00 0.00 0.00 4.35
4285 5743 1.205655 CTCCTGTGCGAGAAGGATCAA 59.794 52.381 0.00 0.00 41.74 2.57
4397 5855 0.989164 CGTCGCGAGAAAATAGCACA 59.011 50.000 10.24 0.00 45.01 4.57
4430 5893 7.454225 AGATGAAGTAGTTGCCTAGTCTTTTT 58.546 34.615 0.00 0.00 0.00 1.94
4477 5940 5.163764 TGTGGTGTAATTTCATGAGCGAATC 60.164 40.000 0.00 0.00 0.00 2.52
4486 5949 8.853077 AATTTCATGAGCGAATCCAAGATATA 57.147 30.769 0.00 0.00 0.00 0.86
4490 5953 9.538508 TTCATGAGCGAATCCAAGATATATATG 57.461 33.333 0.00 0.00 0.00 1.78
4491 5954 8.146412 TCATGAGCGAATCCAAGATATATATGG 58.854 37.037 0.00 9.74 35.49 2.74
4492 5955 7.423844 TGAGCGAATCCAAGATATATATGGT 57.576 36.000 13.90 0.30 35.66 3.55
4494 5961 7.981789 TGAGCGAATCCAAGATATATATGGTTC 59.018 37.037 13.90 14.21 35.66 3.62
4583 6052 2.698855 TGGCAGAGATACTTGAAGCC 57.301 50.000 0.00 0.00 40.93 4.35
4587 6056 2.941720 GCAGAGATACTTGAAGCCCTTG 59.058 50.000 0.00 0.00 0.00 3.61
4601 6070 1.736696 GCCCTTGATCCGTGCATTTTG 60.737 52.381 0.00 0.00 0.00 2.44
4606 6075 2.161855 TGATCCGTGCATTTTGAGCTT 58.838 42.857 0.00 0.00 0.00 3.74
4607 6076 2.162208 TGATCCGTGCATTTTGAGCTTC 59.838 45.455 0.00 0.00 0.00 3.86
4609 6078 0.597568 CCGTGCATTTTGAGCTTCCA 59.402 50.000 0.00 0.00 0.00 3.53
4610 6079 1.203052 CCGTGCATTTTGAGCTTCCAT 59.797 47.619 0.00 0.00 0.00 3.41
4676 6443 5.461032 AGAGCTCTTCCTTGTATAATCCG 57.539 43.478 11.45 0.00 0.00 4.18
4699 6467 7.556275 TCCGAGCTTTGAATACTCCAATAATTT 59.444 33.333 0.00 0.00 0.00 1.82
4700 6468 8.190784 CCGAGCTTTGAATACTCCAATAATTTT 58.809 33.333 0.00 0.00 0.00 1.82
4701 6469 9.573133 CGAGCTTTGAATACTCCAATAATTTTT 57.427 29.630 0.00 0.00 0.00 1.94
4719 6487 4.540359 TTTTTGAGGAAAGGCCATCATG 57.460 40.909 5.01 0.00 40.02 3.07
4720 6488 2.148446 TTGAGGAAAGGCCATCATGG 57.852 50.000 5.01 0.00 41.55 3.66
4737 6505 7.945134 CCATCATGGCTAGCTTTATTAAAACT 58.055 34.615 15.72 0.00 0.00 2.66
4738 6506 8.416329 CCATCATGGCTAGCTTTATTAAAACTT 58.584 33.333 15.72 0.00 0.00 2.66
4773 6541 2.691927 TCGTCTACGAGCTTACTGACA 58.308 47.619 0.14 0.00 44.22 3.58
4774 6542 3.069289 TCGTCTACGAGCTTACTGACAA 58.931 45.455 0.14 0.00 44.22 3.18
4775 6543 3.688185 TCGTCTACGAGCTTACTGACAAT 59.312 43.478 0.14 0.00 44.22 2.71
4776 6544 4.872124 TCGTCTACGAGCTTACTGACAATA 59.128 41.667 0.14 0.00 44.22 1.90
4777 6545 5.352293 TCGTCTACGAGCTTACTGACAATAA 59.648 40.000 0.14 0.00 44.22 1.40
4778 6546 6.025896 CGTCTACGAGCTTACTGACAATAAA 58.974 40.000 0.00 0.00 43.02 1.40
4779 6547 6.194876 CGTCTACGAGCTTACTGACAATAAAG 59.805 42.308 0.00 0.00 43.02 1.85
4780 6548 7.028361 GTCTACGAGCTTACTGACAATAAAGT 58.972 38.462 0.00 0.00 0.00 2.66
4781 6549 7.218583 GTCTACGAGCTTACTGACAATAAAGTC 59.781 40.741 0.00 0.00 38.99 3.01
4782 6550 5.779922 ACGAGCTTACTGACAATAAAGTCA 58.220 37.500 0.00 0.00 45.64 3.41
4788 6556 2.507407 TGACAATAAAGTCAGGGGGC 57.493 50.000 0.00 0.00 43.18 5.80
4789 6557 1.992557 TGACAATAAAGTCAGGGGGCT 59.007 47.619 0.00 0.00 43.18 5.19
4790 6558 2.026262 TGACAATAAAGTCAGGGGGCTC 60.026 50.000 0.00 0.00 43.18 4.70
4791 6559 1.065418 ACAATAAAGTCAGGGGGCTCG 60.065 52.381 0.00 0.00 0.00 5.03
4792 6560 1.065418 CAATAAAGTCAGGGGGCTCGT 60.065 52.381 0.00 0.00 0.00 4.18
4793 6561 0.831307 ATAAAGTCAGGGGGCTCGTC 59.169 55.000 0.00 0.00 0.00 4.20
4794 6562 1.262640 TAAAGTCAGGGGGCTCGTCC 61.263 60.000 0.00 0.00 0.00 4.79
4795 6563 3.846405 AAGTCAGGGGGCTCGTCCA 62.846 63.158 0.00 0.00 36.21 4.02
4796 6564 3.319198 GTCAGGGGGCTCGTCCAA 61.319 66.667 0.00 0.00 36.21 3.53
4797 6565 3.319198 TCAGGGGGCTCGTCCAAC 61.319 66.667 0.00 0.00 36.21 3.77
4798 6566 4.410400 CAGGGGGCTCGTCCAACC 62.410 72.222 0.00 1.38 36.21 3.77
4799 6567 4.974438 AGGGGGCTCGTCCAACCA 62.974 66.667 10.24 0.00 36.27 3.67
4800 6568 3.961414 GGGGGCTCGTCCAACCAA 61.961 66.667 0.00 0.00 36.21 3.67
4801 6569 2.671963 GGGGCTCGTCCAACCAAC 60.672 66.667 0.00 0.00 36.21 3.77
4802 6570 2.430367 GGGCTCGTCCAACCAACT 59.570 61.111 0.00 0.00 36.21 3.16
4803 6571 1.675219 GGGCTCGTCCAACCAACTA 59.325 57.895 0.00 0.00 36.21 2.24
4804 6572 0.035739 GGGCTCGTCCAACCAACTAA 59.964 55.000 0.00 0.00 36.21 2.24
4805 6573 1.543871 GGGCTCGTCCAACCAACTAAA 60.544 52.381 0.00 0.00 36.21 1.85
4806 6574 2.433436 GGCTCGTCCAACCAACTAAAT 58.567 47.619 0.00 0.00 34.01 1.40
4807 6575 2.161609 GGCTCGTCCAACCAACTAAATG 59.838 50.000 0.00 0.00 34.01 2.32
4808 6576 3.071479 GCTCGTCCAACCAACTAAATGA 58.929 45.455 0.00 0.00 0.00 2.57
4809 6577 3.500680 GCTCGTCCAACCAACTAAATGAA 59.499 43.478 0.00 0.00 0.00 2.57
4810 6578 4.378459 GCTCGTCCAACCAACTAAATGAAG 60.378 45.833 0.00 0.00 0.00 3.02
4811 6579 4.710324 TCGTCCAACCAACTAAATGAAGT 58.290 39.130 0.00 0.00 0.00 3.01
4812 6580 4.753107 TCGTCCAACCAACTAAATGAAGTC 59.247 41.667 0.00 0.00 0.00 3.01
4813 6581 4.755123 CGTCCAACCAACTAAATGAAGTCT 59.245 41.667 0.00 0.00 0.00 3.24
4814 6582 5.238650 CGTCCAACCAACTAAATGAAGTCTT 59.761 40.000 0.00 0.00 0.00 3.01
4815 6583 6.425721 CGTCCAACCAACTAAATGAAGTCTTA 59.574 38.462 0.00 0.00 0.00 2.10
4816 6584 7.119262 CGTCCAACCAACTAAATGAAGTCTTAT 59.881 37.037 0.00 0.00 0.00 1.73
4817 6585 8.793592 GTCCAACCAACTAAATGAAGTCTTATT 58.206 33.333 0.00 0.00 0.00 1.40
4841 6609 9.838339 ATTACAGTAACTAAAATGAGCTAGCAT 57.162 29.630 18.83 0.00 0.00 3.79
4844 6612 9.265901 ACAGTAACTAAAATGAGCTAGCATATG 57.734 33.333 18.83 0.00 0.00 1.78
4845 6613 9.481340 CAGTAACTAAAATGAGCTAGCATATGA 57.519 33.333 18.83 0.00 0.00 2.15
4846 6614 9.703892 AGTAACTAAAATGAGCTAGCATATGAG 57.296 33.333 18.83 10.82 0.00 2.90
4847 6615 7.432350 AACTAAAATGAGCTAGCATATGAGC 57.568 36.000 18.83 7.62 39.08 4.26
4848 6616 5.936956 ACTAAAATGAGCTAGCATATGAGCC 59.063 40.000 18.83 2.91 39.65 4.70
4849 6617 4.362470 AAATGAGCTAGCATATGAGCCA 57.638 40.909 18.83 8.19 39.65 4.75
4850 6618 2.827800 TGAGCTAGCATATGAGCCAC 57.172 50.000 18.83 5.72 39.65 5.01
4851 6619 2.323599 TGAGCTAGCATATGAGCCACT 58.676 47.619 18.83 0.00 39.65 4.00
4852 6620 2.702478 TGAGCTAGCATATGAGCCACTT 59.298 45.455 18.83 0.00 39.65 3.16
4853 6621 3.065655 GAGCTAGCATATGAGCCACTTG 58.934 50.000 18.83 0.00 39.65 3.16
4854 6622 2.702478 AGCTAGCATATGAGCCACTTGA 59.298 45.455 18.83 0.00 39.65 3.02
4855 6623 3.327172 AGCTAGCATATGAGCCACTTGAT 59.673 43.478 18.83 0.00 39.65 2.57
4856 6624 4.070716 GCTAGCATATGAGCCACTTGATT 58.929 43.478 10.63 0.00 34.23 2.57
4857 6625 5.012458 AGCTAGCATATGAGCCACTTGATTA 59.988 40.000 18.83 0.00 39.65 1.75
4858 6626 5.121454 GCTAGCATATGAGCCACTTGATTAC 59.879 44.000 10.63 0.00 34.23 1.89
4859 6627 5.039920 AGCATATGAGCCACTTGATTACA 57.960 39.130 6.97 0.00 34.23 2.41
4860 6628 5.439721 AGCATATGAGCCACTTGATTACAA 58.560 37.500 6.97 0.00 34.23 2.41
4861 6629 5.530171 AGCATATGAGCCACTTGATTACAAG 59.470 40.000 6.97 8.18 45.71 3.16
4862 6630 6.633355 AGCATATGAGCCACTTGATTACAAGA 60.633 38.462 6.97 0.00 44.44 3.02
4863 6631 7.908153 AGCATATGAGCCACTTGATTACAAGAT 60.908 37.037 6.97 2.10 44.44 2.40
4892 6660 6.280855 ACAATGCTTATAAACAACCTTCCC 57.719 37.500 0.00 0.00 0.00 3.97
4893 6661 6.016555 ACAATGCTTATAAACAACCTTCCCT 58.983 36.000 0.00 0.00 0.00 4.20
4894 6662 7.179269 ACAATGCTTATAAACAACCTTCCCTA 58.821 34.615 0.00 0.00 0.00 3.53
4895 6663 7.839200 ACAATGCTTATAAACAACCTTCCCTAT 59.161 33.333 0.00 0.00 0.00 2.57
4896 6664 8.695456 CAATGCTTATAAACAACCTTCCCTATT 58.305 33.333 0.00 0.00 0.00 1.73
4897 6665 7.639113 TGCTTATAAACAACCTTCCCTATTG 57.361 36.000 0.00 0.00 0.00 1.90
4898 6666 7.406916 TGCTTATAAACAACCTTCCCTATTGA 58.593 34.615 0.00 0.00 0.00 2.57
4899 6667 7.891183 TGCTTATAAACAACCTTCCCTATTGAA 59.109 33.333 0.00 0.00 0.00 2.69
4900 6668 8.406297 GCTTATAAACAACCTTCCCTATTGAAG 58.594 37.037 0.00 0.00 41.15 3.02
4901 6669 9.462606 CTTATAAACAACCTTCCCTATTGAAGT 57.537 33.333 0.00 0.00 40.11 3.01
4903 6671 8.803397 ATAAACAACCTTCCCTATTGAAGTAC 57.197 34.615 0.00 0.00 40.11 2.73
4904 6672 6.449830 AACAACCTTCCCTATTGAAGTACT 57.550 37.500 0.00 0.00 40.11 2.73
4905 6673 7.563724 AACAACCTTCCCTATTGAAGTACTA 57.436 36.000 0.00 0.00 40.11 1.82
4906 6674 7.184067 ACAACCTTCCCTATTGAAGTACTAG 57.816 40.000 0.00 0.00 40.11 2.57
4907 6675 6.729569 ACAACCTTCCCTATTGAAGTACTAGT 59.270 38.462 0.00 0.00 40.11 2.57
4908 6676 6.793505 ACCTTCCCTATTGAAGTACTAGTG 57.206 41.667 5.39 0.00 40.11 2.74
4909 6677 6.262207 ACCTTCCCTATTGAAGTACTAGTGT 58.738 40.000 5.39 0.00 40.11 3.55
4910 6678 6.380560 ACCTTCCCTATTGAAGTACTAGTGTC 59.619 42.308 5.39 0.86 40.11 3.67
4911 6679 6.183360 CCTTCCCTATTGAAGTACTAGTGTCC 60.183 46.154 5.39 0.00 40.11 4.02
4912 6680 5.834460 TCCCTATTGAAGTACTAGTGTCCA 58.166 41.667 5.39 0.00 0.00 4.02
4913 6681 6.258354 TCCCTATTGAAGTACTAGTGTCCAA 58.742 40.000 5.39 5.10 0.00 3.53
4914 6682 6.727231 TCCCTATTGAAGTACTAGTGTCCAAA 59.273 38.462 5.39 0.00 0.00 3.28
4915 6683 6.817140 CCCTATTGAAGTACTAGTGTCCAAAC 59.183 42.308 5.39 0.00 0.00 2.93
4916 6684 7.383687 CCTATTGAAGTACTAGTGTCCAAACA 58.616 38.462 5.39 0.00 0.00 2.83
4917 6685 8.041323 CCTATTGAAGTACTAGTGTCCAAACAT 58.959 37.037 5.39 0.00 37.81 2.71
4918 6686 9.436957 CTATTGAAGTACTAGTGTCCAAACATT 57.563 33.333 5.39 0.00 37.81 2.71
4919 6687 7.724305 TTGAAGTACTAGTGTCCAAACATTC 57.276 36.000 5.39 2.01 37.81 2.67
4920 6688 7.062749 TGAAGTACTAGTGTCCAAACATTCT 57.937 36.000 5.39 0.00 37.81 2.40
4921 6689 6.929049 TGAAGTACTAGTGTCCAAACATTCTG 59.071 38.462 5.39 0.00 37.81 3.02
4922 6690 5.238583 AGTACTAGTGTCCAAACATTCTGC 58.761 41.667 5.39 0.00 37.81 4.26
4923 6691 3.067106 ACTAGTGTCCAAACATTCTGCG 58.933 45.455 0.00 0.00 37.81 5.18
4924 6692 2.254546 AGTGTCCAAACATTCTGCGA 57.745 45.000 0.00 0.00 37.81 5.10
4925 6693 2.571212 AGTGTCCAAACATTCTGCGAA 58.429 42.857 0.00 0.00 37.81 4.70
4926 6694 3.149196 AGTGTCCAAACATTCTGCGAAT 58.851 40.909 0.00 0.00 37.81 3.34
4927 6695 4.323417 AGTGTCCAAACATTCTGCGAATA 58.677 39.130 3.96 0.00 37.81 1.75
4928 6696 4.943705 AGTGTCCAAACATTCTGCGAATAT 59.056 37.500 3.96 0.00 37.81 1.28
4929 6697 5.415701 AGTGTCCAAACATTCTGCGAATATT 59.584 36.000 3.96 0.00 37.81 1.28
4930 6698 5.512788 GTGTCCAAACATTCTGCGAATATTG 59.487 40.000 0.00 14.67 37.81 1.90
4931 6699 4.500477 GTCCAAACATTCTGCGAATATTGC 59.500 41.667 15.43 0.00 0.00 3.56
4932 6700 3.798337 CCAAACATTCTGCGAATATTGCC 59.202 43.478 15.43 0.00 0.00 4.52
4933 6701 3.338818 AACATTCTGCGAATATTGCCG 57.661 42.857 0.00 0.00 0.00 5.69
4938 6706 4.683334 GCGAATATTGCCGCCGCC 62.683 66.667 9.71 0.00 45.06 6.13
4939 6707 4.368808 CGAATATTGCCGCCGCCG 62.369 66.667 0.00 0.00 0.00 6.46
4940 6708 2.970324 GAATATTGCCGCCGCCGA 60.970 61.111 0.00 0.00 36.29 5.54
4941 6709 2.954753 GAATATTGCCGCCGCCGAG 61.955 63.158 0.00 0.00 36.29 4.63
4942 6710 3.750373 AATATTGCCGCCGCCGAGT 62.750 57.895 0.00 0.00 36.29 4.18
4943 6711 4.884257 TATTGCCGCCGCCGAGTC 62.884 66.667 0.00 0.00 36.29 3.36
4951 6719 3.151710 CCGCCGAGTCCCACCATA 61.152 66.667 0.00 0.00 0.00 2.74
4952 6720 2.507854 CCGCCGAGTCCCACCATAT 61.508 63.158 0.00 0.00 0.00 1.78
4953 6721 1.300931 CGCCGAGTCCCACCATATG 60.301 63.158 0.00 0.00 0.00 1.78
4981 6749 6.119536 TGTCCATCACAATAATTAGTGGGTC 58.880 40.000 14.36 5.84 36.43 4.46
5008 6776 5.975410 TTTTGCATCCACTTTAAAAACCG 57.025 34.783 0.00 0.00 0.00 4.44
5016 6784 6.622833 TCCACTTTAAAAACCGGACTAAAG 57.377 37.500 9.46 16.27 37.38 1.85
5017 6785 5.532032 TCCACTTTAAAAACCGGACTAAAGG 59.468 40.000 9.46 8.92 36.23 3.11
5018 6786 5.278610 CCACTTTAAAAACCGGACTAAAGGG 60.279 44.000 9.46 15.07 36.23 3.95
5019 6787 4.279169 ACTTTAAAAACCGGACTAAAGGGC 59.721 41.667 9.46 0.00 36.23 5.19
5020 6788 2.368311 AAAAACCGGACTAAAGGGCA 57.632 45.000 9.46 0.00 0.00 5.36
5021 6789 2.597578 AAAACCGGACTAAAGGGCAT 57.402 45.000 9.46 0.00 0.00 4.40
5022 6790 3.724732 AAAACCGGACTAAAGGGCATA 57.275 42.857 9.46 0.00 0.00 3.14
5023 6791 3.724732 AAACCGGACTAAAGGGCATAA 57.275 42.857 9.46 0.00 0.00 1.90
5024 6792 2.704464 ACCGGACTAAAGGGCATAAC 57.296 50.000 9.46 0.00 0.00 1.89
5025 6793 1.211212 ACCGGACTAAAGGGCATAACC 59.789 52.381 9.46 0.00 37.93 2.85
5026 6794 1.210967 CCGGACTAAAGGGCATAACCA 59.789 52.381 0.00 0.00 42.05 3.67
5027 6795 2.158667 CCGGACTAAAGGGCATAACCAT 60.159 50.000 0.00 0.00 42.05 3.55
5028 6796 2.878406 CGGACTAAAGGGCATAACCATG 59.122 50.000 0.00 0.00 42.05 3.66
5029 6797 3.684413 CGGACTAAAGGGCATAACCATGT 60.684 47.826 0.00 0.00 42.05 3.21
5030 6798 4.443739 CGGACTAAAGGGCATAACCATGTA 60.444 45.833 0.00 0.00 42.05 2.29
5031 6799 5.442391 GGACTAAAGGGCATAACCATGTAA 58.558 41.667 0.00 0.00 42.05 2.41
5032 6800 6.068670 GGACTAAAGGGCATAACCATGTAAT 58.931 40.000 0.00 0.00 42.05 1.89
5033 6801 6.549736 GGACTAAAGGGCATAACCATGTAATT 59.450 38.462 0.00 0.00 42.05 1.40
5034 6802 7.069455 GGACTAAAGGGCATAACCATGTAATTT 59.931 37.037 0.00 0.00 42.05 1.82
5035 6803 8.007405 ACTAAAGGGCATAACCATGTAATTTC 57.993 34.615 0.00 0.00 42.05 2.17
5036 6804 7.839200 ACTAAAGGGCATAACCATGTAATTTCT 59.161 33.333 0.00 0.00 42.05 2.52
5037 6805 6.469782 AAGGGCATAACCATGTAATTTCTG 57.530 37.500 0.00 0.00 42.05 3.02
5038 6806 5.765510 AGGGCATAACCATGTAATTTCTGA 58.234 37.500 0.00 0.00 42.05 3.27
5039 6807 6.194235 AGGGCATAACCATGTAATTTCTGAA 58.806 36.000 0.00 0.00 42.05 3.02
5040 6808 6.096846 AGGGCATAACCATGTAATTTCTGAAC 59.903 38.462 0.00 0.00 42.05 3.18
5041 6809 6.096846 GGGCATAACCATGTAATTTCTGAACT 59.903 38.462 0.00 0.00 42.05 3.01
5042 6810 7.363793 GGGCATAACCATGTAATTTCTGAACTT 60.364 37.037 0.00 0.00 42.05 2.66
5043 6811 8.034804 GGCATAACCATGTAATTTCTGAACTTT 58.965 33.333 0.00 0.00 38.86 2.66
5044 6812 9.076596 GCATAACCATGTAATTTCTGAACTTTC 57.923 33.333 0.00 0.00 34.40 2.62
5050 6818 9.573133 CCATGTAATTTCTGAACTTTCATAACC 57.427 33.333 10.63 0.00 36.46 2.85
5051 6819 9.277565 CATGTAATTTCTGAACTTTCATAACCG 57.722 33.333 10.63 0.00 36.46 4.44
5052 6820 8.385898 TGTAATTTCTGAACTTTCATAACCGT 57.614 30.769 0.00 0.00 36.46 4.83
5061 6829 6.369615 TGAACTTTCATAACCGTAGGCTAAAC 59.630 38.462 0.00 0.00 42.11 2.01
5086 6854 4.162040 AGAATAGCCCAAGTTCCATCTG 57.838 45.455 0.00 0.00 0.00 2.90
5274 7064 7.334421 ACATGGTAAATCACATACAACAGACTC 59.666 37.037 0.00 0.00 0.00 3.36
5290 7080 2.164624 AGACTCGGAACATCTAGCACAC 59.835 50.000 0.00 0.00 0.00 3.82
5297 7087 1.362768 ACATCTAGCACACACGCATG 58.637 50.000 0.00 0.00 0.00 4.06
5309 7100 1.518325 CACGCATGTGTTAGGGAACA 58.482 50.000 9.73 0.00 43.41 3.18
5315 7106 4.424061 CATGTGTTAGGGAACATGTGTG 57.576 45.455 0.00 0.00 46.98 3.82
5328 7119 2.159099 ACATGTGTGTCTGTTCACGTCT 60.159 45.455 0.00 0.00 40.74 4.18
5329 7120 2.203800 TGTGTGTCTGTTCACGTCTC 57.796 50.000 0.00 0.00 40.74 3.36
5345 7136 2.442413 GTCTCTGTGCTAGGACTGAGT 58.558 52.381 34.25 0.00 40.78 3.41
5363 7154 6.402222 ACTGAGTCATAAGGCTAGTTTTCTG 58.598 40.000 0.00 0.00 0.00 3.02
5381 7172 4.672587 TCTGTGAGTATGATAAGCCCAC 57.327 45.455 0.00 0.00 0.00 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 2.009165 AGGGTTAGACTAGTCCAGGGT 58.991 52.381 19.38 3.00 0.00 4.34
48 49 3.309600 GGCTAGGGTTAGACTAGTCCA 57.690 52.381 19.38 2.51 40.01 4.02
56 57 0.041535 TCAACGGGGCTAGGGTTAGA 59.958 55.000 0.00 0.00 0.00 2.10
71 72 1.143073 AGGGACACTTTCCTGGTCAAC 59.857 52.381 0.00 0.00 45.09 3.18
74 75 2.658807 AAAGGGACACTTTCCTGGTC 57.341 50.000 0.00 0.00 46.20 4.02
104 105 1.165270 CCATTGGTCAAAGGTCGTCC 58.835 55.000 0.00 0.00 0.00 4.79
108 109 3.552890 GCAAAGTCCATTGGTCAAAGGTC 60.553 47.826 1.86 0.54 31.55 3.85
118 119 3.006110 ACAATCAGGTGCAAAGTCCATTG 59.994 43.478 0.00 0.00 0.00 2.82
129 130 3.561725 GCTAACCTATCACAATCAGGTGC 59.438 47.826 0.00 0.00 41.90 5.01
136 137 5.162637 TCCTATGGGCTAACCTATCACAAT 58.837 41.667 0.00 0.00 38.31 2.71
145 146 9.011095 GTTTTAGAATATTCCTATGGGCTAACC 57.989 37.037 11.92 0.00 40.81 2.85
182 183 5.261216 GAGGGAATTTTGTGATAGGTTGGA 58.739 41.667 0.00 0.00 0.00 3.53
224 225 1.216990 CCAGCACTTAGAGGGGGAAT 58.783 55.000 0.00 0.00 0.00 3.01
229 230 1.327690 TACCGCCAGCACTTAGAGGG 61.328 60.000 0.00 0.00 0.00 4.30
264 265 6.266168 CAACAGCCTTTGTATGTTGGATTA 57.734 37.500 8.95 0.00 46.33 1.75
272 273 2.489329 CACCTCCAACAGCCTTTGTATG 59.511 50.000 0.00 0.00 39.73 2.39
314 317 1.139058 ACCTCGGATGTGGCATTACTC 59.861 52.381 0.00 0.00 31.75 2.59
323 326 1.470632 GCTTCAGAGACCTCGGATGTG 60.471 57.143 12.10 4.17 34.02 3.21
325 328 0.820226 TGCTTCAGAGACCTCGGATG 59.180 55.000 0.98 5.05 34.02 3.51
352 355 6.071840 ACCTAGAGTAGAAGACACAACATCAC 60.072 42.308 0.00 0.00 0.00 3.06
358 361 6.971726 TGAAACCTAGAGTAGAAGACACAA 57.028 37.500 0.00 0.00 0.00 3.33
366 369 5.084519 TGAAGCCTTGAAACCTAGAGTAGA 58.915 41.667 0.00 0.00 0.00 2.59
371 374 4.908601 TCATGAAGCCTTGAAACCTAGA 57.091 40.909 0.00 0.00 0.00 2.43
387 390 2.226330 CACCGGACAAAAGGTTCATGA 58.774 47.619 9.46 0.00 39.00 3.07
390 393 0.466555 CCCACCGGACAAAAGGTTCA 60.467 55.000 9.46 0.00 39.00 3.18
412 415 0.034059 ATCTTCCATGATCGCCGGAC 59.966 55.000 5.05 0.00 0.00 4.79
416 419 1.572085 CGCCATCTTCCATGATCGCC 61.572 60.000 0.00 0.00 28.89 5.54
445 448 2.802719 ACCCTTTGTGCCGAATTACAT 58.197 42.857 0.00 0.00 0.00 2.29
501 574 2.610859 ACGTCCCAGCCCAGGAAT 60.611 61.111 0.00 0.00 34.43 3.01
510 583 0.962489 ACACAGAAGAGACGTCCCAG 59.038 55.000 13.01 0.00 0.00 4.45
544 617 2.659897 GCAGATAGCTCACGCGGG 60.660 66.667 12.47 6.51 42.32 6.13
545 618 2.659897 GGCAGATAGCTCACGCGG 60.660 66.667 12.47 0.00 44.79 6.46
546 619 2.659897 GGGCAGATAGCTCACGCG 60.660 66.667 3.53 3.53 45.63 6.01
552 625 0.978146 ACCGTGAAGGGCAGATAGCT 60.978 55.000 0.00 0.00 46.96 3.32
553 626 0.107654 AACCGTGAAGGGCAGATAGC 60.108 55.000 0.00 0.00 46.96 2.97
554 627 1.066143 ACAACCGTGAAGGGCAGATAG 60.066 52.381 0.00 0.00 46.96 2.08
555 628 0.981183 ACAACCGTGAAGGGCAGATA 59.019 50.000 0.00 0.00 46.96 1.98
556 629 0.981183 TACAACCGTGAAGGGCAGAT 59.019 50.000 0.00 0.00 46.96 2.90
557 630 0.981183 ATACAACCGTGAAGGGCAGA 59.019 50.000 0.00 0.00 46.96 4.26
558 631 1.737793 GAATACAACCGTGAAGGGCAG 59.262 52.381 0.00 0.00 46.96 4.85
559 632 1.816074 GAATACAACCGTGAAGGGCA 58.184 50.000 0.00 0.00 46.96 5.36
560 633 0.725117 CGAATACAACCGTGAAGGGC 59.275 55.000 0.00 0.00 46.96 5.19
561 634 2.373540 TCGAATACAACCGTGAAGGG 57.626 50.000 0.00 0.00 46.96 3.95
679 810 2.093921 TCCGATAATTTGACTGACGGCA 60.094 45.455 0.00 0.00 38.94 5.69
680 811 2.284417 GTCCGATAATTTGACTGACGGC 59.716 50.000 0.00 0.00 38.94 5.68
687 818 3.544244 GCTGCTTCGTCCGATAATTTGAC 60.544 47.826 0.00 0.00 0.00 3.18
695 826 2.510238 GCTGCTGCTTCGTCCGAT 60.510 61.111 8.53 0.00 36.03 4.18
737 870 1.874019 CCGCTCCGTGTCTCATTCG 60.874 63.158 0.00 0.00 0.00 3.34
743 876 0.322277 TTAGTCTCCGCTCCGTGTCT 60.322 55.000 0.00 0.00 0.00 3.41
824 971 3.560068 CCGGTTTATCTGCAGTATGAACC 59.440 47.826 25.88 25.88 39.69 3.62
927 1087 8.168058 TGTATGCTACTTCCCTGTCTATGTATA 58.832 37.037 0.00 0.00 0.00 1.47
935 1095 4.672587 TCATGTATGCTACTTCCCTGTC 57.327 45.455 0.00 0.00 0.00 3.51
936 1096 4.225042 TGTTCATGTATGCTACTTCCCTGT 59.775 41.667 0.00 0.00 0.00 4.00
948 1108 9.070149 CGAGATGTACTATCATGTTCATGTATG 57.930 37.037 11.73 0.00 30.11 2.39
952 1112 7.366513 AGACGAGATGTACTATCATGTTCATG 58.633 38.462 6.46 6.46 30.11 3.07
956 1116 7.255312 GGAGAAGACGAGATGTACTATCATGTT 60.255 40.741 0.00 0.00 0.00 2.71
958 1118 6.429692 AGGAGAAGACGAGATGTACTATCATG 59.570 42.308 0.00 0.00 0.00 3.07
959 1119 6.539173 AGGAGAAGACGAGATGTACTATCAT 58.461 40.000 0.00 0.00 0.00 2.45
960 1120 5.931294 AGGAGAAGACGAGATGTACTATCA 58.069 41.667 0.00 0.00 0.00 2.15
961 1121 7.380536 TCTAGGAGAAGACGAGATGTACTATC 58.619 42.308 0.00 0.00 0.00 2.08
964 1124 5.617528 TCTAGGAGAAGACGAGATGTACT 57.382 43.478 0.00 0.00 0.00 2.73
965 1125 6.870971 AATCTAGGAGAAGACGAGATGTAC 57.129 41.667 0.00 0.00 0.00 2.90
966 1126 6.238786 GCAAATCTAGGAGAAGACGAGATGTA 60.239 42.308 0.00 0.00 0.00 2.29
967 1127 5.451242 GCAAATCTAGGAGAAGACGAGATGT 60.451 44.000 0.00 0.00 0.00 3.06
1041 1210 4.074970 CAAGCAAACCTAAGGTCATCACT 58.925 43.478 0.00 0.00 33.12 3.41
1059 1228 3.976169 CAGTAGCTGGATCTCTACAAGC 58.024 50.000 16.65 0.00 38.05 4.01
1080 1249 3.747976 GCATGGGAACGGTGTGCC 61.748 66.667 0.00 0.00 0.00 5.01
1169 1353 1.975327 CTGCCGGTGAAGAAGAGGA 59.025 57.895 1.90 0.00 0.00 3.71
1293 1483 3.112709 GACGCGAGGTTGAGTGCC 61.113 66.667 15.93 0.00 0.00 5.01
1480 2489 2.151202 CACGTGGCTACCTTTCACAAT 58.849 47.619 7.95 0.00 0.00 2.71
1516 2765 4.393239 AGCAATATGCCCAAGGACATAT 57.607 40.909 2.48 2.48 46.52 1.78
1526 2775 8.096414 ACCATAATATTTGAAAGCAATATGCCC 58.904 33.333 0.00 0.00 46.52 5.36
1574 2854 1.204467 CCATGGCGTTTGGTTTGCTAT 59.796 47.619 0.00 0.00 0.00 2.97
1624 2904 3.509575 CCAGGTTTTGCCATGCTTACTTA 59.490 43.478 0.00 0.00 40.61 2.24
1649 2929 7.498570 TCCTTGCAATGCTCAGTTTTTATTTTT 59.501 29.630 6.82 0.00 0.00 1.94
1650 2930 6.991531 TCCTTGCAATGCTCAGTTTTTATTTT 59.008 30.769 6.82 0.00 0.00 1.82
1651 2931 6.523840 TCCTTGCAATGCTCAGTTTTTATTT 58.476 32.000 6.82 0.00 0.00 1.40
1652 2932 6.100404 TCCTTGCAATGCTCAGTTTTTATT 57.900 33.333 6.82 0.00 0.00 1.40
1653 2933 5.726980 TCCTTGCAATGCTCAGTTTTTAT 57.273 34.783 6.82 0.00 0.00 1.40
1654 2934 5.726980 ATCCTTGCAATGCTCAGTTTTTA 57.273 34.783 6.82 0.00 0.00 1.52
1655 2935 4.612264 ATCCTTGCAATGCTCAGTTTTT 57.388 36.364 6.82 0.00 0.00 1.94
1656 2936 4.612264 AATCCTTGCAATGCTCAGTTTT 57.388 36.364 6.82 0.00 0.00 2.43
1657 2937 4.312443 CAAATCCTTGCAATGCTCAGTTT 58.688 39.130 6.82 0.00 0.00 2.66
1658 2938 3.921677 CAAATCCTTGCAATGCTCAGTT 58.078 40.909 6.82 0.00 0.00 3.16
1708 2988 4.143137 GCTTGACAAATTATTTTGCCACGG 60.143 41.667 9.46 3.32 45.01 4.94
1729 3009 1.348366 TGGCAAATCAAATGCTTGGCT 59.652 42.857 16.64 0.00 43.80 4.75
1730 3010 1.810959 TGGCAAATCAAATGCTTGGC 58.189 45.000 11.90 11.90 43.34 4.52
1737 3017 6.127842 GGATTTTTCAGCATGGCAAATCAAAT 60.128 34.615 11.39 0.00 42.12 2.32
1747 3027 0.526096 CGCCGGATTTTTCAGCATGG 60.526 55.000 5.05 0.00 36.16 3.66
1763 3043 1.559149 TTCGCTACAAACCGAACGCC 61.559 55.000 0.00 0.00 38.40 5.68
1764 3044 0.232816 TTTCGCTACAAACCGAACGC 59.767 50.000 0.00 0.00 42.39 4.84
1766 3046 2.481185 TGGATTTCGCTACAAACCGAAC 59.519 45.455 0.00 0.00 42.39 3.95
1780 3060 6.041979 ACATAAGCCCCATACATTTGGATTTC 59.958 38.462 0.00 0.00 39.25 2.17
1899 3189 8.531146 CCCATATTTTTACAATGTCTTGGAAGT 58.469 33.333 0.00 0.00 36.55 3.01
1900 3190 8.748412 TCCCATATTTTTACAATGTCTTGGAAG 58.252 33.333 0.00 0.00 36.55 3.46
1903 3193 8.477256 ACATCCCATATTTTTACAATGTCTTGG 58.523 33.333 0.00 0.00 36.64 3.61
1910 3200 7.180322 TGCACACATCCCATATTTTTACAAT 57.820 32.000 0.00 0.00 0.00 2.71
1944 3245 2.801631 GCACCTGCTCGGCCTCTAT 61.802 63.158 0.00 0.00 38.21 1.98
1980 3281 3.306703 ACAGTTTGTTTGCGCAATTCTTG 59.693 39.130 25.64 18.48 0.00 3.02
2083 3503 8.560374 GGACCAATACTCTAAAATTATGCTGAC 58.440 37.037 0.00 0.00 0.00 3.51
2090 3510 8.774183 TGCCTAAGGACCAATACTCTAAAATTA 58.226 33.333 0.00 0.00 0.00 1.40
2105 3527 3.454812 TGTAGGAGAAATGCCTAAGGACC 59.545 47.826 0.00 0.00 39.58 4.46
2325 3749 9.368674 TGTCATAATTAATTTGCAACTCATTGG 57.631 29.630 5.91 0.00 36.23 3.16
2398 3847 5.278758 GCCCTGTGTAAGAAAATTGCTTGTA 60.279 40.000 0.00 0.00 0.00 2.41
2873 4325 9.802039 CTAGTTCTGGTAGATATCTAAGGACTT 57.198 37.037 22.38 12.01 31.16 3.01
2946 4398 4.607239 AGCTCATGTTTCTCCAAATCCAT 58.393 39.130 0.00 0.00 0.00 3.41
3008 4460 1.164041 ATTAACATAGTGCGGCGGCC 61.164 55.000 14.25 9.54 38.85 6.13
3168 4623 3.823330 CCGGACCGTTCGAGGAGG 61.823 72.222 13.94 0.00 34.73 4.30
3394 4852 4.727507 ACTGACATGATTCGCTAGTCTT 57.272 40.909 0.00 0.00 0.00 3.01
3520 4978 5.545723 CCATCCATATAGGGAAAGAGTCTGT 59.454 44.000 10.70 0.00 41.12 3.41
3521 4979 5.046014 CCCATCCATATAGGGAAAGAGTCTG 60.046 48.000 10.70 2.18 45.80 3.51
3522 4980 5.097234 CCCATCCATATAGGGAAAGAGTCT 58.903 45.833 10.70 0.00 45.80 3.24
3700 5158 5.009010 TGAAACTCTTGAAGAAATCTGGTGC 59.991 40.000 0.00 0.00 0.00 5.01
3940 5398 2.147958 GTTTACAACATGCAGGGACGA 58.852 47.619 2.31 0.00 0.00 4.20
4285 5743 7.236529 AGCCATAACATGATATCCTCAAATGT 58.763 34.615 0.00 0.08 37.44 2.71
4397 5855 3.775202 CAACTACTTCATCTAGCGCTGT 58.225 45.455 22.90 10.06 0.00 4.40
4477 5940 7.919091 GCATGCATTGAACCATATATATCTTGG 59.081 37.037 14.21 11.37 36.56 3.61
4486 5949 6.999950 ACATATTGCATGCATTGAACCATAT 58.000 32.000 23.37 16.05 0.00 1.78
4489 5952 4.739587 ACATATTGCATGCATTGAACCA 57.260 36.364 23.37 4.56 0.00 3.67
4490 5953 4.676471 CGTACATATTGCATGCATTGAACC 59.324 41.667 23.37 6.41 0.00 3.62
4491 5954 5.509771 TCGTACATATTGCATGCATTGAAC 58.490 37.500 23.37 13.69 0.00 3.18
4492 5955 5.296531 ACTCGTACATATTGCATGCATTGAA 59.703 36.000 23.37 6.76 0.00 2.69
4494 5961 5.049886 AGACTCGTACATATTGCATGCATTG 60.050 40.000 23.37 20.51 0.00 2.82
4566 6035 2.941720 CAAGGGCTTCAAGTATCTCTGC 59.058 50.000 0.00 0.00 0.00 4.26
4567 6036 4.478206 TCAAGGGCTTCAAGTATCTCTG 57.522 45.455 0.00 0.00 0.00 3.35
4568 6037 4.102367 GGATCAAGGGCTTCAAGTATCTCT 59.898 45.833 0.00 0.00 0.00 3.10
4569 6038 4.384940 GGATCAAGGGCTTCAAGTATCTC 58.615 47.826 0.00 0.00 0.00 2.75
4573 6042 1.906574 ACGGATCAAGGGCTTCAAGTA 59.093 47.619 0.00 0.00 0.00 2.24
4579 6048 0.323725 AATGCACGGATCAAGGGCTT 60.324 50.000 14.43 6.71 39.12 4.35
4583 6052 2.733227 GCTCAAAATGCACGGATCAAGG 60.733 50.000 0.00 0.00 0.00 3.61
4587 6056 2.478539 GGAAGCTCAAAATGCACGGATC 60.479 50.000 0.00 0.00 0.00 3.36
4629 6098 5.705441 TGGTGTCCTGTTCTTGCTTTTATAG 59.295 40.000 0.00 0.00 0.00 1.31
4630 6099 5.626142 TGGTGTCCTGTTCTTGCTTTTATA 58.374 37.500 0.00 0.00 0.00 0.98
4631 6100 4.469657 TGGTGTCCTGTTCTTGCTTTTAT 58.530 39.130 0.00 0.00 0.00 1.40
4637 6106 1.876156 CTCTTGGTGTCCTGTTCTTGC 59.124 52.381 0.00 0.00 0.00 4.01
4642 6111 1.428869 AGAGCTCTTGGTGTCCTGTT 58.571 50.000 11.45 0.00 0.00 3.16
4643 6112 1.346068 GAAGAGCTCTTGGTGTCCTGT 59.654 52.381 33.07 5.20 36.11 4.00
4651 6120 5.994668 GGATTATACAAGGAAGAGCTCTTGG 59.005 44.000 33.07 20.06 43.20 3.61
4699 6467 2.833338 CCATGATGGCCTTTCCTCAAAA 59.167 45.455 3.32 0.00 35.26 2.44
4700 6468 2.459644 CCATGATGGCCTTTCCTCAAA 58.540 47.619 3.32 0.00 35.26 2.69
4701 6469 2.148446 CCATGATGGCCTTTCCTCAA 57.852 50.000 3.32 0.00 35.26 3.02
4702 6470 3.909587 CCATGATGGCCTTTCCTCA 57.090 52.632 3.32 0.00 35.26 3.86
4712 6480 7.945134 AGTTTTAATAAAGCTAGCCATGATGG 58.055 34.615 12.13 7.21 33.54 3.51
4754 6522 3.466712 TTGTCAGTAAGCTCGTAGACG 57.533 47.619 0.00 0.00 41.45 4.18
4755 6523 7.028361 ACTTTATTGTCAGTAAGCTCGTAGAC 58.972 38.462 0.00 0.00 0.00 2.59
4756 6524 7.094506 TGACTTTATTGTCAGTAAGCTCGTAGA 60.095 37.037 0.00 0.00 41.43 2.59
4757 6525 7.027760 TGACTTTATTGTCAGTAAGCTCGTAG 58.972 38.462 0.00 0.00 41.43 3.51
4758 6526 6.916440 TGACTTTATTGTCAGTAAGCTCGTA 58.084 36.000 0.00 0.00 41.43 3.43
4759 6527 5.779922 TGACTTTATTGTCAGTAAGCTCGT 58.220 37.500 0.00 0.00 41.43 4.18
4769 6537 1.992557 AGCCCCCTGACTTTATTGTCA 59.007 47.619 0.00 0.00 43.72 3.58
4770 6538 2.644676 GAGCCCCCTGACTTTATTGTC 58.355 52.381 0.00 0.00 37.47 3.18
4771 6539 1.065418 CGAGCCCCCTGACTTTATTGT 60.065 52.381 0.00 0.00 0.00 2.71
4772 6540 1.065418 ACGAGCCCCCTGACTTTATTG 60.065 52.381 0.00 0.00 0.00 1.90
4773 6541 1.209747 GACGAGCCCCCTGACTTTATT 59.790 52.381 0.00 0.00 0.00 1.40
4774 6542 0.831307 GACGAGCCCCCTGACTTTAT 59.169 55.000 0.00 0.00 0.00 1.40
4775 6543 1.262640 GGACGAGCCCCCTGACTTTA 61.263 60.000 0.00 0.00 0.00 1.85
4776 6544 2.593956 GGACGAGCCCCCTGACTTT 61.594 63.158 0.00 0.00 0.00 2.66
4777 6545 3.003763 GGACGAGCCCCCTGACTT 61.004 66.667 0.00 0.00 0.00 3.01
4778 6546 3.846405 TTGGACGAGCCCCCTGACT 62.846 63.158 0.00 0.00 34.97 3.41
4779 6547 3.319198 TTGGACGAGCCCCCTGAC 61.319 66.667 0.00 0.00 34.97 3.51
4780 6548 3.319198 GTTGGACGAGCCCCCTGA 61.319 66.667 0.00 0.00 34.97 3.86
4781 6549 4.410400 GGTTGGACGAGCCCCCTG 62.410 72.222 0.00 0.00 34.97 4.45
4782 6550 4.974438 TGGTTGGACGAGCCCCCT 62.974 66.667 0.00 0.00 34.97 4.79
4783 6551 3.961414 TTGGTTGGACGAGCCCCC 61.961 66.667 0.00 0.00 34.97 5.40
4784 6552 1.833787 TAGTTGGTTGGACGAGCCCC 61.834 60.000 0.00 0.00 34.97 5.80
4785 6553 0.035739 TTAGTTGGTTGGACGAGCCC 59.964 55.000 0.00 0.00 34.97 5.19
4786 6554 1.886886 TTTAGTTGGTTGGACGAGCC 58.113 50.000 0.00 0.00 37.10 4.70
4787 6555 3.071479 TCATTTAGTTGGTTGGACGAGC 58.929 45.455 0.00 0.00 0.00 5.03
4788 6556 4.755123 ACTTCATTTAGTTGGTTGGACGAG 59.245 41.667 0.00 0.00 0.00 4.18
4789 6557 4.710324 ACTTCATTTAGTTGGTTGGACGA 58.290 39.130 0.00 0.00 0.00 4.20
4790 6558 4.755123 AGACTTCATTTAGTTGGTTGGACG 59.245 41.667 0.00 0.00 0.00 4.79
4791 6559 6.635030 AAGACTTCATTTAGTTGGTTGGAC 57.365 37.500 0.00 0.00 0.00 4.02
4792 6560 8.934023 AATAAGACTTCATTTAGTTGGTTGGA 57.066 30.769 0.00 0.00 0.00 3.53
4815 6583 9.838339 ATGCTAGCTCATTTTAGTTACTGTAAT 57.162 29.630 17.23 0.00 0.00 1.89
4818 6586 9.265901 CATATGCTAGCTCATTTTAGTTACTGT 57.734 33.333 17.23 0.00 0.00 3.55
4819 6587 9.481340 TCATATGCTAGCTCATTTTAGTTACTG 57.519 33.333 17.23 0.00 0.00 2.74
4820 6588 9.703892 CTCATATGCTAGCTCATTTTAGTTACT 57.296 33.333 17.23 0.00 0.00 2.24
4821 6589 8.439286 GCTCATATGCTAGCTCATTTTAGTTAC 58.561 37.037 17.23 0.00 35.80 2.50
4822 6590 7.604164 GGCTCATATGCTAGCTCATTTTAGTTA 59.396 37.037 17.23 0.00 38.80 2.24
4823 6591 6.429385 GGCTCATATGCTAGCTCATTTTAGTT 59.571 38.462 17.23 0.00 38.80 2.24
4824 6592 5.936956 GGCTCATATGCTAGCTCATTTTAGT 59.063 40.000 17.23 0.00 38.80 2.24
4825 6593 5.936372 TGGCTCATATGCTAGCTCATTTTAG 59.064 40.000 17.23 6.06 38.80 1.85
4826 6594 5.702670 GTGGCTCATATGCTAGCTCATTTTA 59.297 40.000 17.23 0.00 38.80 1.52
4827 6595 4.518211 GTGGCTCATATGCTAGCTCATTTT 59.482 41.667 17.23 0.00 38.80 1.82
4828 6596 4.070716 GTGGCTCATATGCTAGCTCATTT 58.929 43.478 17.23 0.00 38.80 2.32
4829 6597 3.327172 AGTGGCTCATATGCTAGCTCATT 59.673 43.478 17.23 6.68 38.80 2.57
4830 6598 2.905085 AGTGGCTCATATGCTAGCTCAT 59.095 45.455 17.23 4.41 38.80 2.90
4831 6599 2.323599 AGTGGCTCATATGCTAGCTCA 58.676 47.619 17.23 3.61 38.80 4.26
4832 6600 3.065655 CAAGTGGCTCATATGCTAGCTC 58.934 50.000 17.23 9.10 38.80 4.09
4833 6601 2.702478 TCAAGTGGCTCATATGCTAGCT 59.298 45.455 17.23 4.07 38.80 3.32
4834 6602 3.117491 TCAAGTGGCTCATATGCTAGC 57.883 47.619 8.10 8.10 38.03 3.42
4835 6603 6.226052 TGTAATCAAGTGGCTCATATGCTAG 58.774 40.000 0.00 0.00 0.00 3.42
4836 6604 6.173427 TGTAATCAAGTGGCTCATATGCTA 57.827 37.500 0.00 0.00 0.00 3.49
4837 6605 5.039920 TGTAATCAAGTGGCTCATATGCT 57.960 39.130 0.00 0.00 0.00 3.79
4838 6606 5.755813 CTTGTAATCAAGTGGCTCATATGC 58.244 41.667 0.00 0.00 44.09 3.14
4866 6634 8.474831 GGGAAGGTTGTTTATAAGCATTGTTAT 58.525 33.333 2.62 0.00 0.00 1.89
4867 6635 7.672239 AGGGAAGGTTGTTTATAAGCATTGTTA 59.328 33.333 2.62 0.00 0.00 2.41
4868 6636 6.496911 AGGGAAGGTTGTTTATAAGCATTGTT 59.503 34.615 2.62 0.00 0.00 2.83
4869 6637 6.016555 AGGGAAGGTTGTTTATAAGCATTGT 58.983 36.000 2.62 0.00 0.00 2.71
4870 6638 6.530019 AGGGAAGGTTGTTTATAAGCATTG 57.470 37.500 2.62 0.00 0.00 2.82
4871 6639 8.695456 CAATAGGGAAGGTTGTTTATAAGCATT 58.305 33.333 2.62 0.00 0.00 3.56
4872 6640 8.058847 TCAATAGGGAAGGTTGTTTATAAGCAT 58.941 33.333 2.62 0.00 0.00 3.79
4873 6641 7.406916 TCAATAGGGAAGGTTGTTTATAAGCA 58.593 34.615 0.00 0.00 0.00 3.91
4874 6642 7.875327 TCAATAGGGAAGGTTGTTTATAAGC 57.125 36.000 0.00 0.00 0.00 3.09
4875 6643 9.462606 ACTTCAATAGGGAAGGTTGTTTATAAG 57.537 33.333 7.71 0.00 46.73 1.73
4877 6645 9.895138 GTACTTCAATAGGGAAGGTTGTTTATA 57.105 33.333 7.71 0.00 46.73 0.98
4878 6646 8.612145 AGTACTTCAATAGGGAAGGTTGTTTAT 58.388 33.333 7.71 0.00 46.73 1.40
4879 6647 7.981142 AGTACTTCAATAGGGAAGGTTGTTTA 58.019 34.615 7.71 0.00 46.73 2.01
4880 6648 6.849151 AGTACTTCAATAGGGAAGGTTGTTT 58.151 36.000 7.71 0.00 46.73 2.83
4881 6649 6.449830 AGTACTTCAATAGGGAAGGTTGTT 57.550 37.500 7.71 0.00 46.73 2.83
4882 6650 6.729569 ACTAGTACTTCAATAGGGAAGGTTGT 59.270 38.462 0.00 0.00 46.73 3.32
4883 6651 7.042335 CACTAGTACTTCAATAGGGAAGGTTG 58.958 42.308 0.00 0.00 46.73 3.77
4884 6652 6.729569 ACACTAGTACTTCAATAGGGAAGGTT 59.270 38.462 0.00 0.00 46.73 3.50
4885 6653 6.262207 ACACTAGTACTTCAATAGGGAAGGT 58.738 40.000 0.00 0.00 46.73 3.50
4886 6654 6.183360 GGACACTAGTACTTCAATAGGGAAGG 60.183 46.154 0.00 0.00 46.73 3.46
4888 6656 6.258354 TGGACACTAGTACTTCAATAGGGAA 58.742 40.000 0.00 0.00 0.00 3.97
4889 6657 5.834460 TGGACACTAGTACTTCAATAGGGA 58.166 41.667 0.00 0.00 0.00 4.20
4890 6658 6.540438 TTGGACACTAGTACTTCAATAGGG 57.460 41.667 0.00 0.00 0.00 3.53
4891 6659 7.383687 TGTTTGGACACTAGTACTTCAATAGG 58.616 38.462 0.00 0.00 0.00 2.57
4892 6660 9.436957 AATGTTTGGACACTAGTACTTCAATAG 57.563 33.333 0.00 0.00 38.91 1.73
4893 6661 9.431887 GAATGTTTGGACACTAGTACTTCAATA 57.568 33.333 0.00 0.00 38.91 1.90
4894 6662 8.157476 AGAATGTTTGGACACTAGTACTTCAAT 58.843 33.333 0.00 0.00 38.91 2.57
4895 6663 7.441157 CAGAATGTTTGGACACTAGTACTTCAA 59.559 37.037 0.00 0.00 38.91 2.69
4896 6664 6.929049 CAGAATGTTTGGACACTAGTACTTCA 59.071 38.462 0.00 0.00 38.91 3.02
4897 6665 6.128526 GCAGAATGTTTGGACACTAGTACTTC 60.129 42.308 0.00 0.00 38.91 3.01
4898 6666 5.701290 GCAGAATGTTTGGACACTAGTACTT 59.299 40.000 0.00 0.00 38.91 2.24
4899 6667 5.238583 GCAGAATGTTTGGACACTAGTACT 58.761 41.667 0.00 0.00 38.91 2.73
4900 6668 4.091509 CGCAGAATGTTTGGACACTAGTAC 59.908 45.833 0.00 0.00 38.91 2.73
4901 6669 4.021807 TCGCAGAATGTTTGGACACTAGTA 60.022 41.667 0.00 0.00 38.91 1.82
4902 6670 3.067106 CGCAGAATGTTTGGACACTAGT 58.933 45.455 0.00 0.00 38.91 2.57
4903 6671 3.325870 TCGCAGAATGTTTGGACACTAG 58.674 45.455 0.00 0.00 38.91 2.57
4904 6672 3.394674 TCGCAGAATGTTTGGACACTA 57.605 42.857 0.00 0.00 38.91 2.74
4905 6673 2.254546 TCGCAGAATGTTTGGACACT 57.745 45.000 0.00 0.00 38.91 3.55
4906 6674 3.559238 ATTCGCAGAATGTTTGGACAC 57.441 42.857 3.51 0.00 45.90 3.67
4907 6675 5.639757 CAATATTCGCAGAATGTTTGGACA 58.360 37.500 12.17 0.00 45.90 4.02
4908 6676 4.500477 GCAATATTCGCAGAATGTTTGGAC 59.500 41.667 18.49 8.72 45.90 4.02
4909 6677 4.439974 GGCAATATTCGCAGAATGTTTGGA 60.440 41.667 18.49 3.31 45.90 3.53
4910 6678 3.798337 GGCAATATTCGCAGAATGTTTGG 59.202 43.478 18.49 9.72 45.90 3.28
4911 6679 3.483196 CGGCAATATTCGCAGAATGTTTG 59.517 43.478 12.17 14.29 45.90 2.93
4912 6680 3.694734 CGGCAATATTCGCAGAATGTTT 58.305 40.909 12.17 5.34 45.90 2.83
4913 6681 3.338818 CGGCAATATTCGCAGAATGTT 57.661 42.857 12.17 9.61 45.90 2.71
4922 6690 4.368808 CGGCGGCGGCAATATTCG 62.369 66.667 32.59 11.08 42.47 3.34
4923 6691 2.954753 CTCGGCGGCGGCAATATTC 61.955 63.158 32.59 0.77 42.47 1.75
4924 6692 2.972505 CTCGGCGGCGGCAATATT 60.973 61.111 32.59 0.00 42.47 1.28
4925 6693 4.235762 ACTCGGCGGCGGCAATAT 62.236 61.111 32.59 12.32 42.47 1.28
4926 6694 4.884257 GACTCGGCGGCGGCAATA 62.884 66.667 32.59 16.32 42.47 1.90
4934 6702 2.507854 ATATGGTGGGACTCGGCGG 61.508 63.158 7.21 0.00 0.00 6.13
4935 6703 1.300931 CATATGGTGGGACTCGGCG 60.301 63.158 0.00 0.00 0.00 6.46
4936 6704 1.071471 CCATATGGTGGGACTCGGC 59.929 63.158 14.09 0.00 44.79 5.54
4957 6725 6.069673 AGACCCACTAATTATTGTGATGGACA 60.070 38.462 6.46 0.00 36.38 4.02
4958 6726 6.357367 AGACCCACTAATTATTGTGATGGAC 58.643 40.000 6.46 2.20 36.38 4.02
4959 6727 6.575244 AGACCCACTAATTATTGTGATGGA 57.425 37.500 6.46 0.00 36.38 3.41
4960 6728 7.645058 AAAGACCCACTAATTATTGTGATGG 57.355 36.000 6.46 3.55 36.38 3.51
4992 6760 6.208007 CCTTTAGTCCGGTTTTTAAAGTGGAT 59.792 38.462 18.78 0.00 33.41 3.41
5000 6768 3.505480 TGCCCTTTAGTCCGGTTTTTA 57.495 42.857 0.00 0.00 0.00 1.52
5007 6775 2.702592 TGGTTATGCCCTTTAGTCCG 57.297 50.000 0.00 0.00 36.04 4.79
5008 6776 3.898482 ACATGGTTATGCCCTTTAGTCC 58.102 45.455 0.00 0.00 37.85 3.85
5016 6784 6.096846 AGTTCAGAAATTACATGGTTATGCCC 59.903 38.462 0.00 0.00 37.85 5.36
5017 6785 7.100458 AGTTCAGAAATTACATGGTTATGCC 57.900 36.000 0.00 0.00 37.85 4.40
5018 6786 8.986477 AAAGTTCAGAAATTACATGGTTATGC 57.014 30.769 0.00 0.00 37.85 3.14
5024 6792 9.573133 GGTTATGAAAGTTCAGAAATTACATGG 57.427 33.333 2.84 0.00 39.74 3.66
5025 6793 9.277565 CGGTTATGAAAGTTCAGAAATTACATG 57.722 33.333 2.84 0.00 39.74 3.21
5026 6794 9.010029 ACGGTTATGAAAGTTCAGAAATTACAT 57.990 29.630 2.84 0.00 39.74 2.29
5027 6795 8.385898 ACGGTTATGAAAGTTCAGAAATTACA 57.614 30.769 2.84 0.00 39.74 2.41
5028 6796 9.968743 CTACGGTTATGAAAGTTCAGAAATTAC 57.031 33.333 2.84 0.00 39.74 1.89
5029 6797 9.158233 CCTACGGTTATGAAAGTTCAGAAATTA 57.842 33.333 2.84 0.00 39.74 1.40
5030 6798 7.361799 GCCTACGGTTATGAAAGTTCAGAAATT 60.362 37.037 2.84 0.00 39.74 1.82
5031 6799 6.093633 GCCTACGGTTATGAAAGTTCAGAAAT 59.906 38.462 2.84 0.00 39.74 2.17
5032 6800 5.410439 GCCTACGGTTATGAAAGTTCAGAAA 59.590 40.000 2.84 0.00 39.74 2.52
5033 6801 4.933400 GCCTACGGTTATGAAAGTTCAGAA 59.067 41.667 0.00 0.00 41.08 3.02
5034 6802 4.222145 AGCCTACGGTTATGAAAGTTCAGA 59.778 41.667 0.00 0.00 41.08 3.27
5035 6803 4.504858 AGCCTACGGTTATGAAAGTTCAG 58.495 43.478 0.00 0.00 41.08 3.02
5036 6804 4.546829 AGCCTACGGTTATGAAAGTTCA 57.453 40.909 0.00 0.00 42.14 3.18
5037 6805 6.369615 TGTTTAGCCTACGGTTATGAAAGTTC 59.630 38.462 0.00 0.00 0.00 3.01
5038 6806 6.232692 TGTTTAGCCTACGGTTATGAAAGTT 58.767 36.000 0.00 0.00 0.00 2.66
5039 6807 5.797051 TGTTTAGCCTACGGTTATGAAAGT 58.203 37.500 0.00 0.00 0.00 2.66
5040 6808 6.920569 ATGTTTAGCCTACGGTTATGAAAG 57.079 37.500 0.00 0.00 0.00 2.62
5041 6809 8.259411 TCTTATGTTTAGCCTACGGTTATGAAA 58.741 33.333 0.00 0.00 0.00 2.69
5042 6810 7.784037 TCTTATGTTTAGCCTACGGTTATGAA 58.216 34.615 0.00 0.00 0.00 2.57
5043 6811 7.350744 TCTTATGTTTAGCCTACGGTTATGA 57.649 36.000 0.00 0.00 0.00 2.15
5044 6812 8.603242 ATTCTTATGTTTAGCCTACGGTTATG 57.397 34.615 0.00 0.00 0.00 1.90
5045 6813 9.924650 CTATTCTTATGTTTAGCCTACGGTTAT 57.075 33.333 0.00 0.00 0.00 1.89
5046 6814 7.869429 GCTATTCTTATGTTTAGCCTACGGTTA 59.131 37.037 0.00 0.00 32.72 2.85
5047 6815 6.704937 GCTATTCTTATGTTTAGCCTACGGTT 59.295 38.462 0.00 0.00 32.72 4.44
5048 6816 6.221659 GCTATTCTTATGTTTAGCCTACGGT 58.778 40.000 0.00 0.00 32.72 4.83
5049 6817 6.707599 GCTATTCTTATGTTTAGCCTACGG 57.292 41.667 0.00 0.00 32.72 4.02
5061 6829 6.206243 CAGATGGAACTTGGGCTATTCTTATG 59.794 42.308 0.00 0.00 0.00 1.90
5086 6854 1.696988 CCATTGGCGTGCTTTACAAC 58.303 50.000 0.00 0.00 0.00 3.32
5178 6946 7.440505 TCTGGCTAATTACCTAACCATGTTA 57.559 36.000 0.00 0.00 0.00 2.41
5274 7064 0.992072 CGTGTGTGCTAGATGTTCCG 59.008 55.000 0.00 0.00 0.00 4.30
5301 7091 4.002906 GAACAGACACACATGTTCCCTA 57.997 45.455 0.00 0.00 46.15 3.53
5302 7092 2.851195 GAACAGACACACATGTTCCCT 58.149 47.619 0.00 0.00 46.15 4.20
5309 7100 2.362397 AGAGACGTGAACAGACACACAT 59.638 45.455 0.00 0.00 40.34 3.21
5315 7106 1.132588 GCACAGAGACGTGAACAGAC 58.867 55.000 0.00 0.00 39.34 3.51
5324 7115 1.400142 CTCAGTCCTAGCACAGAGACG 59.600 57.143 0.00 0.00 32.91 4.18
5328 7119 2.586648 TGACTCAGTCCTAGCACAGA 57.413 50.000 1.24 0.00 0.00 3.41
5329 7120 4.202101 CCTTATGACTCAGTCCTAGCACAG 60.202 50.000 1.24 0.00 0.00 3.66
5345 7136 6.360370 ACTCACAGAAAACTAGCCTTATGA 57.640 37.500 6.14 0.00 0.00 2.15
5363 7154 3.454371 ACGTGGGCTTATCATACTCAC 57.546 47.619 0.00 0.00 0.00 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.