Multiple sequence alignment - TraesCS6D01G333700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G333700 chr6D 100.000 4900 0 0 1 4900 435969617 435974516 0.000000e+00 9049.0
1 TraesCS6D01G333700 chr6D 100.000 92 0 0 5188 5279 435974804 435974895 2.530000e-38 171.0
2 TraesCS6D01G333700 chr6A 91.168 3442 270 13 600 4017 582938519 582941950 0.000000e+00 4641.0
3 TraesCS6D01G333700 chr6A 91.268 481 36 2 4259 4733 582942401 582942881 0.000000e+00 651.0
4 TraesCS6D01G333700 chr6A 96.797 281 7 2 3983 4263 582941946 582942224 8.000000e-128 468.0
5 TraesCS6D01G333700 chr6A 96.639 119 4 0 4725 4843 183352239 183352121 1.160000e-46 198.0
6 TraesCS6D01G333700 chr6B 94.523 2976 129 22 1 2961 658581418 658584374 0.000000e+00 4562.0
7 TraesCS6D01G333700 chr6B 90.999 811 65 7 2948 3758 658587317 658588119 0.000000e+00 1086.0
8 TraesCS6D01G333700 chr6B 92.966 526 35 2 3761 4285 658593285 658593809 0.000000e+00 765.0
9 TraesCS6D01G333700 chr6B 90.687 451 37 4 3905 4353 658648353 658648800 3.520000e-166 595.0
10 TraesCS6D01G333700 chr6B 89.381 452 31 4 4289 4733 658595177 658595618 2.150000e-153 553.0
11 TraesCS6D01G333700 chr6B 92.408 382 28 1 3474 3855 658647540 658647920 1.290000e-150 544.0
12 TraesCS6D01G333700 chr6B 94.203 69 3 1 4669 4736 658648866 658648934 2.600000e-18 104.0
13 TraesCS6D01G333700 chr1B 81.344 3334 580 33 981 4293 334680372 334683684 0.000000e+00 2673.0
14 TraesCS6D01G333700 chr1D 81.008 2717 486 21 1595 4296 238943299 238940598 0.000000e+00 2132.0
15 TraesCS6D01G333700 chr1D 97.414 116 3 0 4733 4848 247520958 247521073 1.160000e-46 198.0
16 TraesCS6D01G333700 chr1A 81.570 1427 237 17 2884 4296 302899380 302897966 0.000000e+00 1155.0
17 TraesCS6D01G333700 chr7D 99.091 110 1 0 4730 4839 615266607 615266716 1.160000e-46 198.0
18 TraesCS6D01G333700 chr4A 98.214 112 2 0 4731 4842 593739132 593739021 4.170000e-46 196.0
19 TraesCS6D01G333700 chr4A 92.857 70 3 2 624 693 659436429 659436362 3.360000e-17 100.0
20 TraesCS6D01G333700 chr4A 92.857 70 3 2 624 693 659499402 659499335 3.360000e-17 100.0
21 TraesCS6D01G333700 chr3B 98.214 112 2 0 4731 4842 772411461 772411572 4.170000e-46 196.0
22 TraesCS6D01G333700 chr7B 97.368 114 2 1 4733 4846 559142301 559142189 5.400000e-45 193.0
23 TraesCS6D01G333700 chr3A 95.082 122 4 2 4728 4848 681449781 681449901 1.940000e-44 191.0
24 TraesCS6D01G333700 chr3A 97.143 35 1 0 3804 3838 36249064 36249098 5.710000e-05 60.2
25 TraesCS6D01G333700 chr7A 94.309 123 5 2 4717 4839 32944542 32944422 2.510000e-43 187.0
26 TraesCS6D01G333700 chr7A 95.575 113 4 1 4729 4840 81137044 81137156 4.200000e-41 180.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G333700 chr6D 435969617 435974895 5278 False 4610.000000 9049 100.000000 1 5279 2 chr6D.!!$F1 5278
1 TraesCS6D01G333700 chr6A 582938519 582942881 4362 False 1920.000000 4641 93.077667 600 4733 3 chr6A.!!$F1 4133
2 TraesCS6D01G333700 chr6B 658581418 658588119 6701 False 2824.000000 4562 92.761000 1 3758 2 chr6B.!!$F1 3757
3 TraesCS6D01G333700 chr6B 658593285 658595618 2333 False 659.000000 765 91.173500 3761 4733 2 chr6B.!!$F2 972
4 TraesCS6D01G333700 chr6B 658647540 658648934 1394 False 414.333333 595 92.432667 3474 4736 3 chr6B.!!$F3 1262
5 TraesCS6D01G333700 chr1B 334680372 334683684 3312 False 2673.000000 2673 81.344000 981 4293 1 chr1B.!!$F1 3312
6 TraesCS6D01G333700 chr1D 238940598 238943299 2701 True 2132.000000 2132 81.008000 1595 4296 1 chr1D.!!$R1 2701
7 TraesCS6D01G333700 chr1A 302897966 302899380 1414 True 1155.000000 1155 81.570000 2884 4296 1 chr1A.!!$R1 1412

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
34 35 0.102300 AAAGAACACAACCAAGGCGC 59.898 50.0 0.00 0.0 0.00 6.53 F
507 511 0.458716 GCCGCTAGAACCTCAGTGTC 60.459 60.0 0.00 0.0 0.00 3.67 F
1357 1385 0.826062 CCCATGGACAATTTCCCAGC 59.174 55.0 15.22 0.0 45.17 4.85 F
2616 2647 0.036732 TAGGTGGCCTCACAAAGCTG 59.963 55.0 3.32 0.0 45.32 4.24 F
3540 6531 0.037326 TGCCTCACGGTGATCTTGAC 60.037 55.0 11.86 0.0 0.00 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1851 1879 0.042431 TTGGTAGCCCATTGCCCAAT 59.958 50.000 0.00 0.0 41.49 3.16 R
2034 2062 2.856222 CTTGACTTCAGCTGGTTTCCT 58.144 47.619 15.13 0.0 0.00 3.36 R
3290 6275 0.036388 ATACCGTCCTGTGCCAACTG 60.036 55.000 0.00 0.0 0.00 3.16 R
3902 6894 0.321671 ACCGTATTCTGCACTGCACT 59.678 50.000 0.00 0.0 33.79 4.40 R
4810 9795 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.0 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.480073 GCAGAGCAGCAAAAGAACACAA 60.480 45.455 0.00 0.00 0.00 3.33
27 28 2.099756 AGAGCAGCAAAAGAACACAACC 59.900 45.455 0.00 0.00 0.00 3.77
29 30 2.233431 AGCAGCAAAAGAACACAACCAA 59.767 40.909 0.00 0.00 0.00 3.67
30 31 2.604462 GCAGCAAAAGAACACAACCAAG 59.396 45.455 0.00 0.00 0.00 3.61
31 32 3.189285 CAGCAAAAGAACACAACCAAGG 58.811 45.455 0.00 0.00 0.00 3.61
32 33 1.933181 GCAAAAGAACACAACCAAGGC 59.067 47.619 0.00 0.00 0.00 4.35
33 34 2.192624 CAAAAGAACACAACCAAGGCG 58.807 47.619 0.00 0.00 0.00 5.52
34 35 0.102300 AAAGAACACAACCAAGGCGC 59.898 50.000 0.00 0.00 0.00 6.53
39 40 4.973055 ACAACCAAGGCGCGCGTA 62.973 61.111 32.35 0.00 0.00 4.42
90 91 4.186159 CCCATCTCATTCAAACATTTGCC 58.814 43.478 0.00 0.00 38.05 4.52
105 106 3.363351 GCCTTCTGCAAGCAAGCT 58.637 55.556 0.00 0.00 40.77 3.74
140 142 4.339872 TGTCTTGGCATGCTTCAAAATT 57.660 36.364 18.92 0.00 0.00 1.82
150 152 1.274447 GCTTCAAAATTGCCCAGCTCT 59.726 47.619 0.00 0.00 0.00 4.09
156 158 3.386932 AAATTGCCCAGCTCTTCCATA 57.613 42.857 0.00 0.00 0.00 2.74
232 234 1.600957 CAGAGTTGTCTGCAGGTTGTG 59.399 52.381 15.13 0.64 43.89 3.33
254 256 2.414559 CGCCCACTAATGTTCTTGCTTG 60.415 50.000 0.00 0.00 0.00 4.01
257 259 4.501400 GCCCACTAATGTTCTTGCTTGTTT 60.501 41.667 0.00 0.00 0.00 2.83
258 260 5.222631 CCCACTAATGTTCTTGCTTGTTTC 58.777 41.667 0.00 0.00 0.00 2.78
260 262 6.461509 CCCACTAATGTTCTTGCTTGTTTCTT 60.462 38.462 0.00 0.00 0.00 2.52
261 263 7.255451 CCCACTAATGTTCTTGCTTGTTTCTTA 60.255 37.037 0.00 0.00 0.00 2.10
262 264 7.591426 CCACTAATGTTCTTGCTTGTTTCTTAC 59.409 37.037 0.00 0.00 0.00 2.34
263 265 8.128582 CACTAATGTTCTTGCTTGTTTCTTACA 58.871 33.333 0.00 0.00 34.12 2.41
264 266 8.850156 ACTAATGTTCTTGCTTGTTTCTTACAT 58.150 29.630 0.00 0.00 36.44 2.29
268 270 7.083858 TGTTCTTGCTTGTTTCTTACATATGC 58.916 34.615 1.58 0.00 36.44 3.14
276 278 7.452880 TTGTTTCTTACATATGCTCTTGCTT 57.547 32.000 1.58 0.00 37.01 3.91
282 284 3.087031 ACATATGCTCTTGCTTGCTTGT 58.913 40.909 1.58 0.00 40.48 3.16
330 333 4.581824 ACACTCTACTTGACGAGTTTACCA 59.418 41.667 0.00 0.00 38.37 3.25
342 345 4.809426 ACGAGTTTACCAGACTTCAAACTG 59.191 41.667 9.47 0.00 40.38 3.16
386 390 5.319043 ACTCCCTCTGTTCCAAAATAACA 57.681 39.130 0.00 0.00 35.61 2.41
488 492 3.515286 CTTGGCATCCCAGCAGCG 61.515 66.667 0.00 0.00 43.37 5.18
503 507 2.583593 GCGCCGCTAGAACCTCAG 60.584 66.667 0.00 0.00 0.00 3.35
504 508 2.885861 CGCCGCTAGAACCTCAGT 59.114 61.111 0.00 0.00 0.00 3.41
507 511 0.458716 GCCGCTAGAACCTCAGTGTC 60.459 60.000 0.00 0.00 0.00 3.67
508 512 0.888619 CCGCTAGAACCTCAGTGTCA 59.111 55.000 0.00 0.00 0.00 3.58
535 539 1.626321 TCCTCCATGTGCTTCCGTTTA 59.374 47.619 0.00 0.00 0.00 2.01
568 572 3.530260 CCCATCACCATTGCCGCC 61.530 66.667 0.00 0.00 0.00 6.13
622 626 3.128242 GTGCCTCCATTTGATCAAGTCTG 59.872 47.826 8.41 7.82 0.00 3.51
710 729 9.823647 ATATTTGATATAGTAGATCTTTGCGGG 57.176 33.333 0.00 0.00 0.00 6.13
723 749 4.116961 TCTTTGCGGGTTATTCTATGTCG 58.883 43.478 0.00 0.00 0.00 4.35
762 788 8.519799 TTGACTTGTGAAAATCCTAGAACTTT 57.480 30.769 0.00 0.00 0.00 2.66
780 806 8.411991 AGAACTTTAATTATTTGGGAACGGAA 57.588 30.769 0.00 0.00 0.00 4.30
817 843 3.494332 ACTACTCCTACAAACCACGAGT 58.506 45.455 0.00 0.00 37.54 4.18
913 939 3.181499 GCAAAATCTCATGACTCTGGCTG 60.181 47.826 0.00 0.00 0.00 4.85
922 948 2.703416 TGACTCTGGCTGCTATGTTTG 58.297 47.619 0.00 0.00 0.00 2.93
1066 1094 2.818432 CTGGCATCAGCTTCAAGTTTCT 59.182 45.455 0.00 0.00 41.70 2.52
1141 1169 1.593296 GGGTCTAAGCCGTCACTCGT 61.593 60.000 0.00 0.00 37.94 4.18
1251 1279 1.745320 TTAATCTCTCCTCGGCGGGC 61.745 60.000 7.21 0.00 0.00 6.13
1336 1364 7.496920 TCAGCTACAATCTATTTCATGGTGAAG 59.503 37.037 0.00 0.00 37.70 3.02
1357 1385 0.826062 CCCATGGACAATTTCCCAGC 59.174 55.000 15.22 0.00 45.17 4.85
1529 1557 3.607775 CGTCTTGTCAGCATCAAACTTGG 60.608 47.826 0.00 0.00 0.00 3.61
1809 1837 1.153549 GTCCTCACTCGCCCACATC 60.154 63.158 0.00 0.00 0.00 3.06
1850 1878 4.760047 CGGCACACTTCCCTCCGG 62.760 72.222 0.00 0.00 36.73 5.14
1851 1879 3.319198 GGCACACTTCCCTCCGGA 61.319 66.667 2.93 2.93 35.88 5.14
1967 1995 2.950781 TCAGTCACTTGACCTCTCTGT 58.049 47.619 5.73 0.00 45.85 3.41
2034 2062 4.007659 GCCCGAACTTCCTGATTCTTAAA 58.992 43.478 0.00 0.00 0.00 1.52
2153 2181 2.691011 GGTTTAGTGGTGTGCTTCCAAA 59.309 45.455 0.00 0.00 36.68 3.28
2250 2278 1.204704 GGCATTGGCAACTTCCCTTAC 59.795 52.381 0.00 0.00 43.71 2.34
2274 2305 3.569194 ATCAAGCTCGGACTCTCTAGA 57.431 47.619 0.00 0.00 0.00 2.43
2420 2451 3.929610 GAGCACCTTTCAGTAGCTAACAG 59.070 47.826 0.00 0.00 35.36 3.16
2616 2647 0.036732 TAGGTGGCCTCACAAAGCTG 59.963 55.000 3.32 0.00 45.32 4.24
2667 2698 2.618984 TGGGATGCTGCCAGATACA 58.381 52.632 0.00 0.00 30.85 2.29
2669 2700 0.536006 GGGATGCTGCCAGATACACC 60.536 60.000 0.00 0.00 0.00 4.16
2676 2707 0.322456 TGCCAGATACACCCAGCAAC 60.322 55.000 0.00 0.00 0.00 4.17
2712 2743 2.421529 GGAGCTCCGTTTGGATGGTAAT 60.422 50.000 19.06 0.00 45.33 1.89
2752 2783 4.033009 TCCTCTGTCCATAAGCAGAATGA 58.967 43.478 0.00 0.00 40.68 2.57
2766 2797 3.133003 GCAGAATGAGAGGCTTGGTACTA 59.867 47.826 0.00 0.00 39.69 1.82
2784 2815 8.472007 TGGTACTACTGAATTTGACCAAAAAT 57.528 30.769 0.00 0.00 32.69 1.82
2787 2818 6.815089 ACTACTGAATTTGACCAAAAATGCA 58.185 32.000 0.00 0.00 33.49 3.96
2807 2838 0.742281 CTCACAGGTGCAATCCCTCG 60.742 60.000 0.00 0.00 0.00 4.63
2817 2848 1.548269 GCAATCCCTCGAGAGATAGGG 59.452 57.143 15.71 6.39 44.73 3.53
2829 2860 3.582208 GAGAGATAGGGCTCATGAATGGT 59.418 47.826 0.00 0.00 37.37 3.55
2909 2940 4.458989 GGAAAGCATGACATCACTTTACCA 59.541 41.667 11.26 0.00 32.70 3.25
3031 6016 2.354821 GGTGGTATTTCCGAGTTGCATC 59.645 50.000 0.00 0.00 39.52 3.91
3064 6049 2.472816 CAACCAAACCAGTTGTGCATC 58.527 47.619 0.00 0.00 39.79 3.91
3078 6063 5.470098 AGTTGTGCATCGTCAAAGAATAACT 59.530 36.000 0.00 0.00 0.00 2.24
3080 6065 4.994217 TGTGCATCGTCAAAGAATAACTCA 59.006 37.500 0.00 0.00 0.00 3.41
3081 6066 5.107104 TGTGCATCGTCAAAGAATAACTCAC 60.107 40.000 0.00 0.00 0.00 3.51
3089 6074 5.174398 GTCAAAGAATAACTCACGTCGTTCA 59.826 40.000 0.00 0.00 0.00 3.18
3160 6145 3.055530 CCTGGCACTAGTTGTCTTCTCAT 60.056 47.826 0.00 0.00 0.00 2.90
3162 6147 5.337571 CCTGGCACTAGTTGTCTTCTCATTA 60.338 44.000 0.00 0.00 0.00 1.90
3166 6151 7.173218 TGGCACTAGTTGTCTTCTCATTAAAAG 59.827 37.037 0.00 0.00 0.00 2.27
3167 6152 7.361286 GGCACTAGTTGTCTTCTCATTAAAAGG 60.361 40.741 0.00 0.00 0.00 3.11
3189 6174 9.547279 AAAGGGAAATTAAGAATACCATCAGTT 57.453 29.630 0.00 0.00 0.00 3.16
3202 6187 2.744202 CCATCAGTTAGAACAGCACCAC 59.256 50.000 0.00 0.00 0.00 4.16
3213 6198 1.606601 AGCACCACTAGCTCCGTCA 60.607 57.895 0.00 0.00 38.01 4.35
3220 6205 2.101415 CCACTAGCTCCGTCATTCATGA 59.899 50.000 0.00 0.00 0.00 3.07
3334 6319 6.388689 TGGATGTGTTTATAAGGGTAGGATGT 59.611 38.462 0.00 0.00 0.00 3.06
3393 6378 0.322816 TTGACCCTGAGCAATCTGGC 60.323 55.000 0.00 0.00 0.00 4.85
3540 6531 0.037326 TGCCTCACGGTGATCTTGAC 60.037 55.000 11.86 0.00 0.00 3.18
3555 6546 5.700832 TGATCTTGACAAGTGGTTACATCAC 59.299 40.000 14.75 0.00 35.51 3.06
3561 6552 3.181469 ACAAGTGGTTACATCACGACACT 60.181 43.478 0.00 0.00 40.55 3.55
3669 6660 1.080093 CAACTGCCAGCCAGCAATG 60.080 57.895 0.00 0.00 45.78 2.82
3744 6735 1.080638 ATGTTGGGGACTTTGGCCTA 58.919 50.000 3.32 0.00 0.00 3.93
3754 6745 3.127030 GGACTTTGGCCTAACGAAGATTG 59.873 47.826 3.32 0.00 35.77 2.67
3759 6750 2.007608 GGCCTAACGAAGATTGTCACC 58.992 52.381 0.00 0.00 0.00 4.02
3902 6894 6.259167 GGTTTGGCATATTACTCATGTCGTTA 59.741 38.462 0.00 0.00 30.41 3.18
3908 7282 6.346120 GCATATTACTCATGTCGTTAGTGCAG 60.346 42.308 0.00 0.00 0.00 4.41
3944 7318 4.590647 TGAAGGTGGTCAGATATCTCCATC 59.409 45.833 14.49 14.01 32.45 3.51
4008 7412 1.337260 ACAGCAAAGACGCCTACAGAG 60.337 52.381 0.00 0.00 0.00 3.35
4267 7853 2.271800 CAGGAGTAACTAGGCAAAGCG 58.728 52.381 0.00 0.00 0.00 4.68
4302 9252 5.512753 TGAACAGCAGTGCTTTAATTTCA 57.487 34.783 16.89 15.24 36.40 2.69
4311 9261 8.186821 AGCAGTGCTTTAATTTCACAAGATATC 58.813 33.333 13.14 0.00 33.89 1.63
4372 9350 4.594970 AGAGCATGTCAGACAGTAGTACT 58.405 43.478 9.64 0.00 0.00 2.73
4486 9471 4.448395 CAGATAGAAGCACTTATGAGCTGC 59.552 45.833 0.00 0.00 39.93 5.25
4487 9472 2.775911 AGAAGCACTTATGAGCTGCA 57.224 45.000 1.02 0.00 39.93 4.41
4508 9493 5.706833 TGCAAACAGAGAAAGCAAGATATCA 59.293 36.000 5.32 0.00 31.42 2.15
4514 9499 6.703607 ACAGAGAAAGCAAGATATCATAACCG 59.296 38.462 5.32 0.00 0.00 4.44
4515 9500 6.703607 CAGAGAAAGCAAGATATCATAACCGT 59.296 38.462 5.32 0.00 0.00 4.83
4560 9545 4.635765 ACCTGGTTCACATGTCAAATATCG 59.364 41.667 0.00 0.00 0.00 2.92
4561 9546 4.496341 CCTGGTTCACATGTCAAATATCGC 60.496 45.833 0.00 0.00 0.00 4.58
4615 9600 6.107343 GGTTCTCTGTCTGGTAAACTTATCC 58.893 44.000 0.00 0.00 0.00 2.59
4619 9604 4.020928 TCTGTCTGGTAAACTTATCCGCAA 60.021 41.667 0.00 0.00 0.00 4.85
4630 9615 2.949177 TATCCGCAACCCATTAGCAT 57.051 45.000 0.00 0.00 0.00 3.79
4670 9655 0.933097 CAGCGGCAGTCATGTACATC 59.067 55.000 5.07 0.00 0.00 3.06
4682 9667 6.600822 CAGTCATGTACATCTCAAGGGAAAAT 59.399 38.462 5.07 0.00 0.00 1.82
4737 9722 9.569122 TGGGAATAGCAAAATATAAAGTACTCC 57.431 33.333 0.00 0.00 0.00 3.85
4738 9723 9.011095 GGGAATAGCAAAATATAAAGTACTCCC 57.989 37.037 0.00 0.00 0.00 4.30
4739 9724 9.794719 GGAATAGCAAAATATAAAGTACTCCCT 57.205 33.333 0.00 0.00 0.00 4.20
4741 9726 9.794719 AATAGCAAAATATAAAGTACTCCCTCC 57.205 33.333 0.00 0.00 0.00 4.30
4742 9727 6.289064 AGCAAAATATAAAGTACTCCCTCCG 58.711 40.000 0.00 0.00 0.00 4.63
4743 9728 6.053650 GCAAAATATAAAGTACTCCCTCCGT 58.946 40.000 0.00 0.00 0.00 4.69
4744 9729 6.541278 GCAAAATATAAAGTACTCCCTCCGTT 59.459 38.462 0.00 0.00 0.00 4.44
4745 9730 7.254692 GCAAAATATAAAGTACTCCCTCCGTTC 60.255 40.741 0.00 0.00 0.00 3.95
4746 9731 6.416631 AATATAAAGTACTCCCTCCGTTCC 57.583 41.667 0.00 0.00 0.00 3.62
4747 9732 0.893447 AAAGTACTCCCTCCGTTCCG 59.107 55.000 0.00 0.00 0.00 4.30
4748 9733 0.038744 AAGTACTCCCTCCGTTCCGA 59.961 55.000 0.00 0.00 0.00 4.55
4749 9734 0.038744 AGTACTCCCTCCGTTCCGAA 59.961 55.000 0.00 0.00 0.00 4.30
4750 9735 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
4751 9736 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
4752 9737 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
4753 9738 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
4754 9739 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
4755 9740 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
4756 9741 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4757 9742 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4758 9743 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4759 9744 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
4760 9745 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
4761 9746 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
4762 9747 2.156117 CGTTCCGAATTACTTGTCGCAA 59.844 45.455 0.00 0.00 35.93 4.85
4763 9748 3.720920 CGTTCCGAATTACTTGTCGCAAG 60.721 47.826 15.16 15.16 35.93 4.01
4764 9749 3.034721 TCCGAATTACTTGTCGCAAGT 57.965 42.857 22.53 22.53 35.93 3.16
4765 9750 4.177165 TCCGAATTACTTGTCGCAAGTA 57.823 40.909 20.95 20.95 35.93 2.24
4766 9751 4.751060 TCCGAATTACTTGTCGCAAGTAT 58.249 39.130 23.59 14.96 35.93 2.12
4767 9752 4.565166 TCCGAATTACTTGTCGCAAGTATG 59.435 41.667 23.59 16.51 35.93 2.39
4768 9753 4.260212 CCGAATTACTTGTCGCAAGTATGG 60.260 45.833 23.59 19.57 35.93 2.74
4769 9754 4.565166 CGAATTACTTGTCGCAAGTATGGA 59.435 41.667 23.59 14.66 33.27 3.41
4770 9755 5.234329 CGAATTACTTGTCGCAAGTATGGAT 59.766 40.000 23.59 15.77 33.27 3.41
4771 9756 5.991328 ATTACTTGTCGCAAGTATGGATG 57.009 39.130 23.59 2.90 33.27 3.51
4772 9757 3.334583 ACTTGTCGCAAGTATGGATGT 57.665 42.857 19.21 0.00 39.48 3.06
4773 9758 4.465632 ACTTGTCGCAAGTATGGATGTA 57.534 40.909 19.21 0.00 39.48 2.29
4774 9759 5.023533 ACTTGTCGCAAGTATGGATGTAT 57.976 39.130 19.21 0.00 39.48 2.29
4775 9760 5.050490 ACTTGTCGCAAGTATGGATGTATC 58.950 41.667 19.21 0.00 39.48 2.24
4776 9761 4.937201 TGTCGCAAGTATGGATGTATCT 57.063 40.909 0.00 0.00 39.48 1.98
4777 9762 6.040504 ACTTGTCGCAAGTATGGATGTATCTA 59.959 38.462 19.21 0.00 39.48 1.98
4778 9763 6.013842 TGTCGCAAGTATGGATGTATCTAG 57.986 41.667 0.00 0.00 39.48 2.43
4779 9764 5.768164 TGTCGCAAGTATGGATGTATCTAGA 59.232 40.000 0.00 0.00 39.48 2.43
4780 9765 6.434340 TGTCGCAAGTATGGATGTATCTAGAT 59.566 38.462 10.73 10.73 39.48 1.98
4781 9766 6.749578 GTCGCAAGTATGGATGTATCTAGATG 59.250 42.308 15.79 0.00 39.48 2.90
4782 9767 6.434340 TCGCAAGTATGGATGTATCTAGATGT 59.566 38.462 15.79 1.25 39.48 3.06
4783 9768 7.610305 TCGCAAGTATGGATGTATCTAGATGTA 59.390 37.037 15.79 4.44 39.48 2.29
4784 9769 8.409371 CGCAAGTATGGATGTATCTAGATGTAT 58.591 37.037 15.79 9.11 0.00 2.29
4811 9796 8.662781 TTAGTTCTAGATACATCCATTTGTGC 57.337 34.615 0.00 0.00 0.00 4.57
4812 9797 5.755375 AGTTCTAGATACATCCATTTGTGCG 59.245 40.000 0.00 0.00 0.00 5.34
4813 9798 5.529581 TCTAGATACATCCATTTGTGCGA 57.470 39.130 0.00 0.00 0.00 5.10
4814 9799 5.289595 TCTAGATACATCCATTTGTGCGAC 58.710 41.667 0.00 0.00 0.00 5.19
4815 9800 2.866156 AGATACATCCATTTGTGCGACG 59.134 45.455 0.00 0.00 0.00 5.12
4816 9801 2.371910 TACATCCATTTGTGCGACGA 57.628 45.000 0.00 0.00 0.00 4.20
4817 9802 1.078709 ACATCCATTTGTGCGACGAG 58.921 50.000 0.00 0.00 0.00 4.18
4818 9803 1.078709 CATCCATTTGTGCGACGAGT 58.921 50.000 0.00 0.00 0.00 4.18
4819 9804 2.267426 CATCCATTTGTGCGACGAGTA 58.733 47.619 0.00 0.00 0.00 2.59
4820 9805 2.442212 TCCATTTGTGCGACGAGTAA 57.558 45.000 0.00 0.00 0.00 2.24
4821 9806 2.967362 TCCATTTGTGCGACGAGTAAT 58.033 42.857 0.00 0.00 0.00 1.89
4822 9807 3.331150 TCCATTTGTGCGACGAGTAATT 58.669 40.909 0.00 0.00 0.00 1.40
4823 9808 3.749088 TCCATTTGTGCGACGAGTAATTT 59.251 39.130 0.00 0.00 0.00 1.82
4824 9809 3.845775 CCATTTGTGCGACGAGTAATTTG 59.154 43.478 0.00 0.00 0.00 2.32
4825 9810 3.529634 TTTGTGCGACGAGTAATTTGG 57.470 42.857 0.00 0.00 0.00 3.28
4826 9811 2.442212 TGTGCGACGAGTAATTTGGA 57.558 45.000 0.00 0.00 0.00 3.53
4827 9812 2.756829 TGTGCGACGAGTAATTTGGAA 58.243 42.857 0.00 0.00 0.00 3.53
4828 9813 2.477375 TGTGCGACGAGTAATTTGGAAC 59.523 45.455 0.00 0.00 0.00 3.62
4829 9814 1.722464 TGCGACGAGTAATTTGGAACG 59.278 47.619 0.00 0.00 0.00 3.95
4830 9815 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
4831 9816 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
4832 9817 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
4833 9818 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
4834 9819 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
4835 9820 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
4836 9821 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
4837 9822 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
4838 9823 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
4839 9824 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
4840 9825 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
4841 9826 2.019807 TTGGAACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
4842 9827 2.905415 TGGAACGGAGGGAGTACTTA 57.095 50.000 0.00 0.00 0.00 2.24
4843 9828 2.731572 TGGAACGGAGGGAGTACTTAG 58.268 52.381 0.00 0.00 0.00 2.18
4844 9829 2.042162 TGGAACGGAGGGAGTACTTAGT 59.958 50.000 0.00 0.00 0.00 2.24
4845 9830 3.095332 GGAACGGAGGGAGTACTTAGTT 58.905 50.000 0.00 0.00 0.00 2.24
4846 9831 4.263905 TGGAACGGAGGGAGTACTTAGTTA 60.264 45.833 0.00 0.00 0.00 2.24
4847 9832 4.337836 GGAACGGAGGGAGTACTTAGTTAG 59.662 50.000 0.00 0.00 0.00 2.34
4848 9833 3.895998 ACGGAGGGAGTACTTAGTTAGG 58.104 50.000 0.00 0.00 0.00 2.69
4849 9834 3.525199 ACGGAGGGAGTACTTAGTTAGGA 59.475 47.826 0.00 0.00 0.00 2.94
4850 9835 4.018050 ACGGAGGGAGTACTTAGTTAGGAA 60.018 45.833 0.00 0.00 0.00 3.36
4851 9836 4.337836 CGGAGGGAGTACTTAGTTAGGAAC 59.662 50.000 0.00 0.00 0.00 3.62
4852 9837 4.337836 GGAGGGAGTACTTAGTTAGGAACG 59.662 50.000 0.00 0.00 36.23 3.95
4853 9838 5.184892 AGGGAGTACTTAGTTAGGAACGA 57.815 43.478 0.00 0.00 36.23 3.85
4854 9839 5.764432 AGGGAGTACTTAGTTAGGAACGAT 58.236 41.667 0.00 0.00 36.23 3.73
4855 9840 6.904626 AGGGAGTACTTAGTTAGGAACGATA 58.095 40.000 0.00 0.00 36.23 2.92
4856 9841 7.349598 AGGGAGTACTTAGTTAGGAACGATAA 58.650 38.462 0.00 0.00 36.23 1.75
4857 9842 7.836183 AGGGAGTACTTAGTTAGGAACGATAAA 59.164 37.037 0.00 0.00 36.23 1.40
4858 9843 8.470002 GGGAGTACTTAGTTAGGAACGATAAAA 58.530 37.037 0.00 0.00 36.23 1.52
4868 9853 9.530633 AGTTAGGAACGATAAAATACAGTGATC 57.469 33.333 0.00 0.00 36.23 2.92
4869 9854 9.530633 GTTAGGAACGATAAAATACAGTGATCT 57.469 33.333 0.00 0.00 0.00 2.75
4872 9857 9.698309 AGGAACGATAAAATACAGTGATCTATG 57.302 33.333 0.00 0.00 0.00 2.23
4873 9858 8.926710 GGAACGATAAAATACAGTGATCTATGG 58.073 37.037 0.00 0.00 0.00 2.74
4874 9859 9.692749 GAACGATAAAATACAGTGATCTATGGA 57.307 33.333 0.00 0.00 0.00 3.41
4875 9860 9.698309 AACGATAAAATACAGTGATCTATGGAG 57.302 33.333 0.00 0.00 0.00 3.86
4876 9861 9.078990 ACGATAAAATACAGTGATCTATGGAGA 57.921 33.333 0.00 0.00 35.71 3.71
4877 9862 9.914131 CGATAAAATACAGTGATCTATGGAGAA 57.086 33.333 0.00 0.00 34.61 2.87
4880 9865 8.443953 AAAATACAGTGATCTATGGAGAAAGC 57.556 34.615 0.00 0.00 34.61 3.51
4881 9866 4.052159 ACAGTGATCTATGGAGAAAGCG 57.948 45.455 0.00 0.00 34.61 4.68
4882 9867 3.449018 ACAGTGATCTATGGAGAAAGCGT 59.551 43.478 0.00 0.00 34.61 5.07
4883 9868 4.645136 ACAGTGATCTATGGAGAAAGCGTA 59.355 41.667 0.00 0.00 34.61 4.42
4884 9869 5.127194 ACAGTGATCTATGGAGAAAGCGTAA 59.873 40.000 0.00 0.00 34.61 3.18
4885 9870 5.460419 CAGTGATCTATGGAGAAAGCGTAAC 59.540 44.000 0.00 0.00 34.61 2.50
4886 9871 5.361285 AGTGATCTATGGAGAAAGCGTAACT 59.639 40.000 0.00 0.00 34.61 2.24
4887 9872 5.688176 GTGATCTATGGAGAAAGCGTAACTC 59.312 44.000 0.00 0.00 34.61 3.01
4888 9873 5.594725 TGATCTATGGAGAAAGCGTAACTCT 59.405 40.000 0.00 0.00 34.61 3.24
4889 9874 6.771267 TGATCTATGGAGAAAGCGTAACTCTA 59.229 38.462 0.00 0.00 34.61 2.43
4890 9875 6.374565 TCTATGGAGAAAGCGTAACTCTAC 57.625 41.667 0.00 0.00 0.00 2.59
4891 9876 6.120905 TCTATGGAGAAAGCGTAACTCTACT 58.879 40.000 0.00 0.00 0.00 2.57
4892 9877 5.662674 ATGGAGAAAGCGTAACTCTACTT 57.337 39.130 0.00 0.00 0.00 2.24
4893 9878 5.056894 TGGAGAAAGCGTAACTCTACTTC 57.943 43.478 0.00 0.00 0.00 3.01
4894 9879 4.082354 TGGAGAAAGCGTAACTCTACTTCC 60.082 45.833 0.00 0.00 0.00 3.46
4895 9880 4.158209 GGAGAAAGCGTAACTCTACTTCCT 59.842 45.833 0.00 0.00 0.00 3.36
4896 9881 5.336610 GGAGAAAGCGTAACTCTACTTCCTT 60.337 44.000 0.00 0.00 0.00 3.36
4897 9882 6.099159 AGAAAGCGTAACTCTACTTCCTTT 57.901 37.500 0.00 0.00 0.00 3.11
4898 9883 5.927115 AGAAAGCGTAACTCTACTTCCTTTG 59.073 40.000 0.00 0.00 0.00 2.77
4899 9884 4.189639 AGCGTAACTCTACTTCCTTTGG 57.810 45.455 0.00 0.00 0.00 3.28
5220 10205 9.860650 ATAGCAACTGGTAAATATCATAACCAA 57.139 29.630 0.00 0.00 41.30 3.67
5221 10206 8.225603 AGCAACTGGTAAATATCATAACCAAG 57.774 34.615 0.00 0.00 41.30 3.61
5222 10207 6.918022 GCAACTGGTAAATATCATAACCAAGC 59.082 38.462 0.00 0.00 41.30 4.01
5223 10208 7.416213 GCAACTGGTAAATATCATAACCAAGCA 60.416 37.037 0.00 0.00 41.30 3.91
5224 10209 7.807977 ACTGGTAAATATCATAACCAAGCAG 57.192 36.000 0.00 0.00 41.30 4.24
5225 10210 7.346471 ACTGGTAAATATCATAACCAAGCAGT 58.654 34.615 0.00 0.00 41.30 4.40
5226 10211 7.834181 ACTGGTAAATATCATAACCAAGCAGTT 59.166 33.333 0.00 0.00 40.41 3.16
5227 10212 8.588290 TGGTAAATATCATAACCAAGCAGTTT 57.412 30.769 0.00 0.00 39.02 2.66
5228 10213 8.465999 TGGTAAATATCATAACCAAGCAGTTTG 58.534 33.333 0.00 0.00 39.02 2.93
5229 10214 8.466798 GGTAAATATCATAACCAAGCAGTTTGT 58.533 33.333 0.00 0.00 34.87 2.83
5232 10217 5.897377 ATCATAACCAAGCAGTTTGTACC 57.103 39.130 0.00 0.00 34.87 3.34
5233 10218 4.980573 TCATAACCAAGCAGTTTGTACCT 58.019 39.130 0.00 0.00 34.87 3.08
5234 10219 6.116711 TCATAACCAAGCAGTTTGTACCTA 57.883 37.500 0.00 0.00 34.87 3.08
5235 10220 6.535540 TCATAACCAAGCAGTTTGTACCTAA 58.464 36.000 0.00 0.00 34.87 2.69
5236 10221 6.999272 TCATAACCAAGCAGTTTGTACCTAAA 59.001 34.615 0.00 0.00 34.87 1.85
5237 10222 7.502895 TCATAACCAAGCAGTTTGTACCTAAAA 59.497 33.333 0.00 0.00 34.87 1.52
5238 10223 6.532988 AACCAAGCAGTTTGTACCTAAAAA 57.467 33.333 0.00 0.00 34.87 1.94
5239 10224 6.724893 ACCAAGCAGTTTGTACCTAAAAAT 57.275 33.333 0.00 0.00 34.87 1.82
5240 10225 7.826918 ACCAAGCAGTTTGTACCTAAAAATA 57.173 32.000 0.00 0.00 34.87 1.40
5241 10226 7.882179 ACCAAGCAGTTTGTACCTAAAAATAG 58.118 34.615 0.00 0.00 34.87 1.73
5242 10227 6.806739 CCAAGCAGTTTGTACCTAAAAATAGC 59.193 38.462 0.00 0.00 34.87 2.97
5243 10228 6.510879 AGCAGTTTGTACCTAAAAATAGCC 57.489 37.500 0.00 0.00 0.00 3.93
5244 10229 6.246163 AGCAGTTTGTACCTAAAAATAGCCT 58.754 36.000 0.00 0.00 0.00 4.58
5245 10230 6.151144 AGCAGTTTGTACCTAAAAATAGCCTG 59.849 38.462 0.00 0.00 0.00 4.85
5246 10231 6.072119 GCAGTTTGTACCTAAAAATAGCCTGT 60.072 38.462 0.00 0.00 0.00 4.00
5247 10232 7.120138 GCAGTTTGTACCTAAAAATAGCCTGTA 59.880 37.037 0.00 0.00 0.00 2.74
5248 10233 8.448615 CAGTTTGTACCTAAAAATAGCCTGTAC 58.551 37.037 0.00 0.00 0.00 2.90
5249 10234 7.609146 AGTTTGTACCTAAAAATAGCCTGTACC 59.391 37.037 0.00 0.00 0.00 3.34
5250 10235 6.879367 TGTACCTAAAAATAGCCTGTACCT 57.121 37.500 0.00 0.00 0.00 3.08
5251 10236 7.261688 TGTACCTAAAAATAGCCTGTACCTT 57.738 36.000 0.00 0.00 0.00 3.50
5252 10237 7.107542 TGTACCTAAAAATAGCCTGTACCTTG 58.892 38.462 0.00 0.00 0.00 3.61
5253 10238 6.382919 ACCTAAAAATAGCCTGTACCTTGA 57.617 37.500 0.00 0.00 0.00 3.02
5254 10239 6.970191 ACCTAAAAATAGCCTGTACCTTGAT 58.030 36.000 0.00 0.00 0.00 2.57
5255 10240 6.828785 ACCTAAAAATAGCCTGTACCTTGATG 59.171 38.462 0.00 0.00 0.00 3.07
5256 10241 6.828785 CCTAAAAATAGCCTGTACCTTGATGT 59.171 38.462 0.00 0.00 0.00 3.06
5257 10242 7.339466 CCTAAAAATAGCCTGTACCTTGATGTT 59.661 37.037 0.00 0.00 0.00 2.71
5258 10243 6.759497 AAAATAGCCTGTACCTTGATGTTC 57.241 37.500 0.00 0.00 0.00 3.18
5259 10244 2.789409 AGCCTGTACCTTGATGTTCC 57.211 50.000 0.00 0.00 0.00 3.62
5260 10245 1.985159 AGCCTGTACCTTGATGTTCCA 59.015 47.619 0.00 0.00 0.00 3.53
5261 10246 2.026822 AGCCTGTACCTTGATGTTCCAG 60.027 50.000 0.00 0.00 0.00 3.86
5262 10247 2.027192 GCCTGTACCTTGATGTTCCAGA 60.027 50.000 0.00 0.00 0.00 3.86
5263 10248 3.370953 GCCTGTACCTTGATGTTCCAGAT 60.371 47.826 0.00 0.00 0.00 2.90
5264 10249 4.848357 CCTGTACCTTGATGTTCCAGATT 58.152 43.478 0.00 0.00 0.00 2.40
5265 10250 5.629133 GCCTGTACCTTGATGTTCCAGATTA 60.629 44.000 0.00 0.00 0.00 1.75
5266 10251 6.051717 CCTGTACCTTGATGTTCCAGATTAG 58.948 44.000 0.00 0.00 0.00 1.73
5267 10252 6.127054 CCTGTACCTTGATGTTCCAGATTAGA 60.127 42.308 0.00 0.00 0.00 2.10
5268 10253 7.252612 TGTACCTTGATGTTCCAGATTAGAA 57.747 36.000 0.00 0.00 0.00 2.10
5269 10254 7.331026 TGTACCTTGATGTTCCAGATTAGAAG 58.669 38.462 0.00 0.00 0.00 2.85
5270 10255 5.749462 ACCTTGATGTTCCAGATTAGAAGG 58.251 41.667 0.00 0.00 34.77 3.46
5271 10256 4.578105 CCTTGATGTTCCAGATTAGAAGGC 59.422 45.833 0.00 0.00 0.00 4.35
5272 10257 5.435291 CTTGATGTTCCAGATTAGAAGGCT 58.565 41.667 0.00 0.00 0.00 4.58
5273 10258 5.441718 TGATGTTCCAGATTAGAAGGCTT 57.558 39.130 0.00 0.00 0.00 4.35
5274 10259 6.560003 TGATGTTCCAGATTAGAAGGCTTA 57.440 37.500 0.00 0.00 0.00 3.09
5275 10260 7.141758 TGATGTTCCAGATTAGAAGGCTTAT 57.858 36.000 0.00 0.00 0.00 1.73
5276 10261 7.220030 TGATGTTCCAGATTAGAAGGCTTATC 58.780 38.462 0.00 0.00 31.87 1.75
5277 10262 6.814954 TGTTCCAGATTAGAAGGCTTATCT 57.185 37.500 0.00 2.08 40.20 1.98
5278 10263 7.200434 TGTTCCAGATTAGAAGGCTTATCTT 57.800 36.000 8.03 0.00 38.17 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.675029 AAGTACGCGCGCCTTGGT 62.675 61.111 32.58 19.87 0.00 3.67
27 28 2.202171 CAAAGTACGCGCGCCTTG 60.202 61.111 32.58 22.46 0.00 3.61
32 33 3.186047 CTCCCCAAAGTACGCGCG 61.186 66.667 30.96 30.96 0.00 6.86
33 34 2.818274 CCTCCCCAAAGTACGCGC 60.818 66.667 5.73 0.00 0.00 6.86
34 35 1.153628 CTCCTCCCCAAAGTACGCG 60.154 63.158 3.53 3.53 0.00 6.01
39 40 3.245407 CCTGAATTTCTCCTCCCCAAAGT 60.245 47.826 0.00 0.00 0.00 2.66
46 47 5.133941 GGGAAATACCTGAATTTCTCCTCC 58.866 45.833 8.69 0.00 42.80 4.30
90 91 1.066605 ACACAAGCTTGCTTGCAGAAG 59.933 47.619 28.55 17.85 37.83 2.85
103 104 4.268405 CCAAGACATGTTTGAAACACAAGC 59.732 41.667 13.56 3.68 45.50 4.01
104 105 4.268405 GCCAAGACATGTTTGAAACACAAG 59.732 41.667 13.56 8.91 45.50 3.16
105 106 4.180057 GCCAAGACATGTTTGAAACACAA 58.820 39.130 13.56 0.00 45.50 3.33
107 108 3.779759 TGCCAAGACATGTTTGAAACAC 58.220 40.909 13.56 0.83 45.50 3.32
108 109 4.370049 CATGCCAAGACATGTTTGAAACA 58.630 39.130 13.66 13.66 46.94 2.83
109 110 4.977741 CATGCCAAGACATGTTTGAAAC 57.022 40.909 17.13 0.14 42.05 2.78
110 111 4.443175 AAGCATGCCAAGACATGTTTGAAA 60.443 37.500 15.66 8.82 45.90 2.69
140 142 1.510492 TGATATGGAAGAGCTGGGCA 58.490 50.000 0.00 0.00 0.00 5.36
150 152 8.548025 TGGTAGAAAGAAGAACATGATATGGAA 58.452 33.333 0.00 0.00 33.60 3.53
232 234 0.179163 GCAAGAACATTAGTGGGCGC 60.179 55.000 0.00 0.00 0.00 6.53
233 235 1.453155 AGCAAGAACATTAGTGGGCG 58.547 50.000 0.00 0.00 0.00 6.13
238 240 8.220755 TGTAAGAAACAAGCAAGAACATTAGT 57.779 30.769 0.00 0.00 34.29 2.24
254 256 5.741040 GCAAGCAAGAGCATATGTAAGAAAC 59.259 40.000 4.29 0.00 45.49 2.78
257 259 4.774124 AGCAAGCAAGAGCATATGTAAGA 58.226 39.130 4.29 0.00 45.49 2.10
258 260 5.163683 ACAAGCAAGCAAGAGCATATGTAAG 60.164 40.000 4.29 0.00 45.49 2.34
260 262 4.095334 CACAAGCAAGCAAGAGCATATGTA 59.905 41.667 4.29 0.00 45.49 2.29
261 263 3.087031 ACAAGCAAGCAAGAGCATATGT 58.913 40.909 4.29 0.00 45.49 2.29
262 264 3.128068 TCACAAGCAAGCAAGAGCATATG 59.872 43.478 0.00 0.00 45.49 1.78
263 265 3.349927 TCACAAGCAAGCAAGAGCATAT 58.650 40.909 0.00 0.00 45.49 1.78
264 266 2.781923 TCACAAGCAAGCAAGAGCATA 58.218 42.857 0.00 0.00 45.49 3.14
265 267 1.612676 TCACAAGCAAGCAAGAGCAT 58.387 45.000 0.00 0.00 45.49 3.79
307 310 4.581824 TGGTAAACTCGTCAAGTAGAGTGT 59.418 41.667 0.00 0.00 45.91 3.55
308 311 5.048921 TCTGGTAAACTCGTCAAGTAGAGTG 60.049 44.000 0.00 0.00 45.91 3.51
364 368 5.319043 TGTTATTTTGGAACAGAGGGAGT 57.681 39.130 0.00 0.00 42.39 3.85
429 433 1.078759 CCACAGACGCGAGGATGAAC 61.079 60.000 15.93 0.00 0.00 3.18
464 468 2.364186 GGGATGCCAAGGGGTTGG 60.364 66.667 0.00 0.00 44.82 3.77
488 492 0.458716 GACACTGAGGTTCTAGCGGC 60.459 60.000 0.00 0.00 0.00 6.53
489 493 0.888619 TGACACTGAGGTTCTAGCGG 59.111 55.000 0.00 0.00 0.00 5.52
515 519 0.400213 AAACGGAAGCACATGGAGGA 59.600 50.000 0.00 0.00 0.00 3.71
549 553 3.891400 CGGCAATGGTGATGGGCG 61.891 66.667 0.00 0.00 44.36 6.13
550 554 4.211502 GCGGCAATGGTGATGGGC 62.212 66.667 0.00 0.00 0.00 5.36
551 555 3.530260 GGCGGCAATGGTGATGGG 61.530 66.667 3.07 0.00 0.00 4.00
552 556 2.440796 AGGCGGCAATGGTGATGG 60.441 61.111 13.08 0.00 0.00 3.51
568 572 2.434359 GAGGAACAACGCGGGGAG 60.434 66.667 12.47 0.00 0.00 4.30
695 714 5.615925 AGAATAACCCGCAAAGATCTACT 57.384 39.130 0.00 0.00 0.00 2.57
762 788 5.192121 TCCTCCTTCCGTTCCCAAATAATTA 59.808 40.000 0.00 0.00 0.00 1.40
780 806 7.710582 AGGAGTAGTAATAGTTAGTCCTCCT 57.289 40.000 10.99 10.99 43.36 3.69
913 939 9.793252 ATATGATTGACTTGAAACAAACATAGC 57.207 29.630 14.48 0.00 41.36 2.97
922 948 7.916977 TGCATGCTTATATGATTGACTTGAAAC 59.083 33.333 20.33 0.00 0.00 2.78
1141 1169 5.988287 TGTGTTCCATGAATCTAGTGCATA 58.012 37.500 0.00 0.00 0.00 3.14
1251 1279 2.894126 AGGAGCTACATATCCACGAAGG 59.106 50.000 0.00 0.00 38.12 3.46
1351 1379 1.142667 TGACATTTGTGACAGCTGGGA 59.857 47.619 19.93 0.00 0.00 4.37
1352 1380 1.608055 TGACATTTGTGACAGCTGGG 58.392 50.000 19.93 0.00 0.00 4.45
1529 1557 0.823356 TTGGTGGAGCTTGTTCAGGC 60.823 55.000 0.00 0.00 0.00 4.85
1809 1837 1.416813 GCTCGTTCATCTGCAGACCG 61.417 60.000 20.97 18.09 0.00 4.79
1850 1878 0.396974 TGGTAGCCCATTGCCCAATC 60.397 55.000 0.00 0.00 42.71 2.67
1851 1879 0.042431 TTGGTAGCCCATTGCCCAAT 59.958 50.000 0.00 0.00 41.49 3.16
1878 1906 3.274288 GTTCAGAGCAAGGATAAGGTGG 58.726 50.000 0.00 0.00 0.00 4.61
1967 1995 4.062293 CACGGATCCAGTGAGTTTGTTAA 58.938 43.478 23.87 0.00 41.83 2.01
2034 2062 2.856222 CTTGACTTCAGCTGGTTTCCT 58.144 47.619 15.13 0.00 0.00 3.36
2153 2181 3.535561 CTGGACAGGTTTGCGATAGAAT 58.464 45.455 0.00 0.00 39.76 2.40
2250 2278 2.955660 AGAGAGTCCGAGCTTGATTAGG 59.044 50.000 1.22 0.00 0.00 2.69
2274 2305 4.578928 GGTATGGCACCTGTAAATCGATTT 59.421 41.667 25.48 25.48 44.79 2.17
2467 2498 5.809562 TGTTTGAAAAGTTTGCATCAACGAT 59.190 32.000 0.00 0.00 31.96 3.73
2516 2547 5.435291 AGGATGACAGGCTAAAAATCTCTG 58.565 41.667 0.00 0.00 0.00 3.35
2616 2647 7.041721 TGTTCTCATGGATGTACAAGTATGTC 58.958 38.462 0.00 0.00 41.05 3.06
2665 2696 0.107456 CTCTCACAGTTGCTGGGTGT 59.893 55.000 0.00 0.00 36.13 4.16
2667 2698 1.072159 GCTCTCACAGTTGCTGGGT 59.928 57.895 0.00 0.00 36.13 4.51
2669 2700 0.873054 CAAGCTCTCACAGTTGCTGG 59.127 55.000 1.08 0.00 35.51 4.85
2676 2707 1.654317 GCTCCATCAAGCTCTCACAG 58.346 55.000 0.00 0.00 39.27 3.66
2712 2743 7.861629 ACAGAGGAATGATACCATTGAAGTAA 58.138 34.615 0.00 0.00 42.66 2.24
2734 2765 4.378774 CCTCTCATTCTGCTTATGGACAG 58.621 47.826 0.00 0.00 35.15 3.51
2752 2783 5.248477 TCAAATTCAGTAGTACCAAGCCTCT 59.752 40.000 0.00 0.00 0.00 3.69
2766 2797 5.673514 AGTGCATTTTTGGTCAAATTCAGT 58.326 33.333 0.00 0.00 0.00 3.41
2787 2818 0.326264 GAGGGATTGCACCTGTGAGT 59.674 55.000 0.00 0.00 38.79 3.41
2807 2838 3.582208 ACCATTCATGAGCCCTATCTCTC 59.418 47.826 0.00 0.00 34.29 3.20
2817 2848 4.699257 AGTTCTTTCAGACCATTCATGAGC 59.301 41.667 0.00 0.00 0.00 4.26
2829 2860 4.127171 GTGCAAGGTACAGTTCTTTCAGA 58.873 43.478 0.00 0.00 0.00 3.27
2973 5958 5.124036 TCCCATCAAATAAGAATCCGGTT 57.876 39.130 0.00 0.00 0.00 4.44
3031 6016 1.186917 TTGGTTGGGCATGAAGGCAG 61.187 55.000 0.00 0.00 46.44 4.85
3078 6063 1.937223 ACTGCATTTTGAACGACGTGA 59.063 42.857 0.00 0.00 0.00 4.35
3080 6065 1.937223 TCACTGCATTTTGAACGACGT 59.063 42.857 0.00 0.00 0.00 4.34
3081 6066 2.661504 TCACTGCATTTTGAACGACG 57.338 45.000 0.00 0.00 0.00 5.12
3089 6074 5.710513 TGCACTAGAAATCACTGCATTTT 57.289 34.783 0.00 0.00 0.00 1.82
3111 6096 7.615403 TCAAGCACAGAAGTAAGATGATACTT 58.385 34.615 0.00 0.00 46.16 2.24
3162 6147 9.547279 ACTGATGGTATTCTTAATTTCCCTTTT 57.453 29.630 0.00 0.00 0.00 2.27
3166 6151 9.847224 TCTAACTGATGGTATTCTTAATTTCCC 57.153 33.333 0.00 0.00 0.00 3.97
3178 6163 4.225042 TGGTGCTGTTCTAACTGATGGTAT 59.775 41.667 4.15 0.00 0.00 2.73
3186 6171 2.900546 AGCTAGTGGTGCTGTTCTAACT 59.099 45.455 0.00 0.00 39.56 2.24
3189 6174 1.825474 GGAGCTAGTGGTGCTGTTCTA 59.175 52.381 0.00 0.00 41.30 2.10
3220 6205 6.227298 AGAAACTCGAGGATACATGTCATT 57.773 37.500 18.41 0.00 41.41 2.57
3290 6275 0.036388 ATACCGTCCTGTGCCAACTG 60.036 55.000 0.00 0.00 0.00 3.16
3334 6319 9.909644 GACAGTAATTACAGACTCTTTCAGTAA 57.090 33.333 17.65 0.00 39.68 2.24
3393 6378 4.336433 TCAGCCACAAAACTTCTTGAAGAG 59.664 41.667 16.21 6.42 0.00 2.85
3401 6386 4.261197 CCTTACACTCAGCCACAAAACTTC 60.261 45.833 0.00 0.00 0.00 3.01
3540 6531 3.390135 AGTGTCGTGATGTAACCACTTG 58.610 45.455 0.00 0.00 29.32 3.16
3555 6546 2.746904 TGAATTGGGTGCATAAGTGTCG 59.253 45.455 0.00 0.00 0.00 4.35
3561 6552 4.832266 ACTTTGACTGAATTGGGTGCATAA 59.168 37.500 0.00 0.00 0.00 1.90
3669 6660 1.604278 GGCTTCAAGTCACAGTGAACC 59.396 52.381 4.32 0.00 30.73 3.62
3744 6735 2.028476 TGGATCGGTGACAATCTTCGTT 60.028 45.455 0.00 0.00 0.00 3.85
3754 6745 1.519455 CGCCTTCTGGATCGGTGAC 60.519 63.158 0.00 0.00 34.57 3.67
3759 6750 0.531532 ATTGCTCGCCTTCTGGATCG 60.532 55.000 0.00 0.00 34.57 3.69
3902 6894 0.321671 ACCGTATTCTGCACTGCACT 59.678 50.000 0.00 0.00 33.79 4.40
3908 7282 1.732259 CACCTTCACCGTATTCTGCAC 59.268 52.381 0.00 0.00 0.00 4.57
3944 7318 3.392616 ACCAAAGCTATAGACATCCCCAG 59.607 47.826 3.21 0.00 0.00 4.45
4008 7412 0.965363 ATCCACCGGTGAACATTGCC 60.965 55.000 36.07 0.00 0.00 4.52
4267 7853 1.165270 CTGTTCAATCACCCGGAACC 58.835 55.000 0.73 0.00 40.04 3.62
4302 9252 3.491342 TCTCGCAGCTAGGATATCTTGT 58.509 45.455 2.05 0.00 0.00 3.16
4311 9261 3.935203 TGATTTTTCTTCTCGCAGCTAGG 59.065 43.478 0.00 0.00 0.00 3.02
4383 9364 9.008965 ACTAATGAGTAAATGTGCACACAATTA 57.991 29.630 24.37 18.07 38.42 1.40
4486 9471 9.713740 GTTATGATATCTTGCTTTCTCTGTTTG 57.286 33.333 3.98 0.00 0.00 2.93
4487 9472 8.897752 GGTTATGATATCTTGCTTTCTCTGTTT 58.102 33.333 3.98 0.00 0.00 2.83
4499 9484 9.663904 CCAAAACAATACGGTTATGATATCTTG 57.336 33.333 3.98 0.00 0.00 3.02
4540 9525 4.260985 AGCGATATTTGACATGTGAACCA 58.739 39.130 1.15 0.00 0.00 3.67
4615 9600 4.930963 TGAATAAATGCTAATGGGTTGCG 58.069 39.130 0.00 0.00 0.00 4.85
4619 9604 7.961326 AAACTCTGAATAAATGCTAATGGGT 57.039 32.000 0.00 0.00 0.00 4.51
4630 9615 6.208644 GCTGCAACTCAAAACTCTGAATAAA 58.791 36.000 0.00 0.00 0.00 1.40
4670 9655 9.762933 TTTCTTGACATTTTATTTTCCCTTGAG 57.237 29.630 0.00 0.00 0.00 3.02
4717 9702 7.070322 ACGGAGGGAGTACTTTATATTTTGCTA 59.930 37.037 0.00 0.00 0.00 3.49
4719 9704 6.053650 ACGGAGGGAGTACTTTATATTTTGC 58.946 40.000 0.00 0.00 0.00 3.68
4741 9726 6.846654 TACTTGCGACAAGTAATTCGGAACG 61.847 44.000 21.94 0.00 40.13 3.95
4742 9727 3.185797 ACTTGCGACAAGTAATTCGGAAC 59.814 43.478 19.21 0.00 40.13 3.62
4743 9728 3.395639 ACTTGCGACAAGTAATTCGGAA 58.604 40.909 19.21 0.00 42.34 4.30
4744 9729 3.034721 ACTTGCGACAAGTAATTCGGA 57.965 42.857 19.21 0.00 35.73 4.55
4745 9730 4.260212 CCATACTTGCGACAAGTAATTCGG 60.260 45.833 25.44 20.47 36.45 4.30
4746 9731 4.565166 TCCATACTTGCGACAAGTAATTCG 59.435 41.667 25.44 17.44 36.45 3.34
4747 9732 6.037172 ACATCCATACTTGCGACAAGTAATTC 59.963 38.462 25.44 0.00 36.45 2.17
4748 9733 5.880332 ACATCCATACTTGCGACAAGTAATT 59.120 36.000 25.44 14.21 36.45 1.40
4749 9734 5.428253 ACATCCATACTTGCGACAAGTAAT 58.572 37.500 25.44 16.71 36.45 1.89
4750 9735 4.827692 ACATCCATACTTGCGACAAGTAA 58.172 39.130 25.44 15.64 36.45 2.24
4751 9736 4.465632 ACATCCATACTTGCGACAAGTA 57.534 40.909 24.52 24.52 37.18 2.24
4752 9737 3.334583 ACATCCATACTTGCGACAAGT 57.665 42.857 22.53 22.53 0.00 3.16
4753 9738 5.292765 AGATACATCCATACTTGCGACAAG 58.707 41.667 15.16 15.16 0.00 3.16
4754 9739 5.276461 AGATACATCCATACTTGCGACAA 57.724 39.130 0.00 0.00 0.00 3.18
4755 9740 4.937201 AGATACATCCATACTTGCGACA 57.063 40.909 0.00 0.00 0.00 4.35
4756 9741 6.255596 TCTAGATACATCCATACTTGCGAC 57.744 41.667 0.00 0.00 0.00 5.19
4757 9742 6.434340 ACATCTAGATACATCCATACTTGCGA 59.566 38.462 4.54 0.00 0.00 5.10
4758 9743 6.625362 ACATCTAGATACATCCATACTTGCG 58.375 40.000 4.54 0.00 0.00 4.85
4785 9770 9.109393 GCACAAATGGATGTATCTAGAACTAAA 57.891 33.333 0.00 0.00 30.84 1.85
4786 9771 7.438160 CGCACAAATGGATGTATCTAGAACTAA 59.562 37.037 0.00 0.00 30.84 2.24
4787 9772 6.923508 CGCACAAATGGATGTATCTAGAACTA 59.076 38.462 0.00 0.00 30.84 2.24
4788 9773 5.755375 CGCACAAATGGATGTATCTAGAACT 59.245 40.000 0.00 0.00 30.84 3.01
4789 9774 5.753438 TCGCACAAATGGATGTATCTAGAAC 59.247 40.000 0.00 0.00 30.84 3.01
4790 9775 5.753438 GTCGCACAAATGGATGTATCTAGAA 59.247 40.000 0.00 0.00 30.84 2.10
4791 9776 5.289595 GTCGCACAAATGGATGTATCTAGA 58.710 41.667 0.00 0.00 30.84 2.43
4792 9777 4.148871 CGTCGCACAAATGGATGTATCTAG 59.851 45.833 0.00 0.00 30.84 2.43
4793 9778 4.048504 CGTCGCACAAATGGATGTATCTA 58.951 43.478 0.00 0.00 30.84 1.98
4794 9779 2.866156 CGTCGCACAAATGGATGTATCT 59.134 45.455 0.00 0.00 30.84 1.98
4795 9780 2.863740 TCGTCGCACAAATGGATGTATC 59.136 45.455 0.00 0.00 30.84 2.24
4796 9781 2.866156 CTCGTCGCACAAATGGATGTAT 59.134 45.455 0.00 0.00 30.84 2.29
4797 9782 2.267426 CTCGTCGCACAAATGGATGTA 58.733 47.619 0.00 0.00 30.84 2.29
4798 9783 1.078709 CTCGTCGCACAAATGGATGT 58.921 50.000 0.00 0.00 0.00 3.06
4799 9784 1.078709 ACTCGTCGCACAAATGGATG 58.921 50.000 0.00 0.00 0.00 3.51
4800 9785 2.665649 TACTCGTCGCACAAATGGAT 57.334 45.000 0.00 0.00 0.00 3.41
4801 9786 2.442212 TTACTCGTCGCACAAATGGA 57.558 45.000 0.00 0.00 0.00 3.41
4802 9787 3.740044 AATTACTCGTCGCACAAATGG 57.260 42.857 0.00 0.00 0.00 3.16
4803 9788 3.845775 CCAAATTACTCGTCGCACAAATG 59.154 43.478 0.00 0.00 0.00 2.32
4804 9789 3.749088 TCCAAATTACTCGTCGCACAAAT 59.251 39.130 0.00 0.00 0.00 2.32
4805 9790 3.132160 TCCAAATTACTCGTCGCACAAA 58.868 40.909 0.00 0.00 0.00 2.83
4806 9791 2.756829 TCCAAATTACTCGTCGCACAA 58.243 42.857 0.00 0.00 0.00 3.33
4807 9792 2.442212 TCCAAATTACTCGTCGCACA 57.558 45.000 0.00 0.00 0.00 4.57
4808 9793 2.471749 CGTTCCAAATTACTCGTCGCAC 60.472 50.000 0.00 0.00 0.00 5.34
4809 9794 1.722464 CGTTCCAAATTACTCGTCGCA 59.278 47.619 0.00 0.00 0.00 5.10
4810 9795 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
4811 9796 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
4812 9797 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
4813 9798 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
4814 9799 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
4815 9800 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
4816 9801 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
4817 9802 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
4818 9803 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
4819 9804 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
4820 9805 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
4821 9806 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
4822 9807 2.019807 AAGTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
4823 9808 2.042162 ACTAAGTACTCCCTCCGTTCCA 59.958 50.000 0.00 0.00 0.00 3.53
4824 9809 2.732763 ACTAAGTACTCCCTCCGTTCC 58.267 52.381 0.00 0.00 0.00 3.62
4825 9810 4.337836 CCTAACTAAGTACTCCCTCCGTTC 59.662 50.000 0.00 0.00 0.00 3.95
4826 9811 4.018050 TCCTAACTAAGTACTCCCTCCGTT 60.018 45.833 0.00 0.00 0.00 4.44
4827 9812 3.525199 TCCTAACTAAGTACTCCCTCCGT 59.475 47.826 0.00 0.00 0.00 4.69
4828 9813 4.162040 TCCTAACTAAGTACTCCCTCCG 57.838 50.000 0.00 0.00 0.00 4.63
4829 9814 4.337836 CGTTCCTAACTAAGTACTCCCTCC 59.662 50.000 0.00 0.00 0.00 4.30
4830 9815 5.189180 TCGTTCCTAACTAAGTACTCCCTC 58.811 45.833 0.00 0.00 0.00 4.30
4831 9816 5.184892 TCGTTCCTAACTAAGTACTCCCT 57.815 43.478 0.00 0.00 0.00 4.20
4832 9817 7.573968 TTATCGTTCCTAACTAAGTACTCCC 57.426 40.000 0.00 0.00 0.00 4.30
4842 9827 9.530633 GATCACTGTATTTTATCGTTCCTAACT 57.469 33.333 0.00 0.00 0.00 2.24
4843 9828 9.530633 AGATCACTGTATTTTATCGTTCCTAAC 57.469 33.333 0.00 0.00 0.00 2.34
4846 9831 9.698309 CATAGATCACTGTATTTTATCGTTCCT 57.302 33.333 0.00 0.00 0.00 3.36
4847 9832 8.926710 CCATAGATCACTGTATTTTATCGTTCC 58.073 37.037 0.00 0.00 0.00 3.62
4848 9833 9.692749 TCCATAGATCACTGTATTTTATCGTTC 57.307 33.333 0.00 0.00 0.00 3.95
4849 9834 9.698309 CTCCATAGATCACTGTATTTTATCGTT 57.302 33.333 0.00 0.00 0.00 3.85
4850 9835 9.078990 TCTCCATAGATCACTGTATTTTATCGT 57.921 33.333 0.00 0.00 0.00 3.73
4851 9836 9.914131 TTCTCCATAGATCACTGTATTTTATCG 57.086 33.333 0.00 0.00 0.00 2.92
4854 9839 9.547753 GCTTTCTCCATAGATCACTGTATTTTA 57.452 33.333 0.00 0.00 0.00 1.52
4855 9840 7.225538 CGCTTTCTCCATAGATCACTGTATTTT 59.774 37.037 0.00 0.00 0.00 1.82
4856 9841 6.703607 CGCTTTCTCCATAGATCACTGTATTT 59.296 38.462 0.00 0.00 0.00 1.40
4857 9842 6.183360 ACGCTTTCTCCATAGATCACTGTATT 60.183 38.462 0.00 0.00 0.00 1.89
4858 9843 5.303078 ACGCTTTCTCCATAGATCACTGTAT 59.697 40.000 0.00 0.00 0.00 2.29
4859 9844 4.645136 ACGCTTTCTCCATAGATCACTGTA 59.355 41.667 0.00 0.00 0.00 2.74
4860 9845 3.449018 ACGCTTTCTCCATAGATCACTGT 59.551 43.478 0.00 0.00 0.00 3.55
4861 9846 4.052159 ACGCTTTCTCCATAGATCACTG 57.948 45.455 0.00 0.00 0.00 3.66
4862 9847 5.361285 AGTTACGCTTTCTCCATAGATCACT 59.639 40.000 0.00 0.00 0.00 3.41
4863 9848 5.593010 AGTTACGCTTTCTCCATAGATCAC 58.407 41.667 0.00 0.00 0.00 3.06
4864 9849 5.594725 AGAGTTACGCTTTCTCCATAGATCA 59.405 40.000 0.00 0.00 0.00 2.92
4865 9850 6.079424 AGAGTTACGCTTTCTCCATAGATC 57.921 41.667 0.00 0.00 0.00 2.75
4866 9851 6.773685 AGTAGAGTTACGCTTTCTCCATAGAT 59.226 38.462 0.00 0.00 34.88 1.98
4867 9852 6.120905 AGTAGAGTTACGCTTTCTCCATAGA 58.879 40.000 0.00 0.00 34.88 1.98
4868 9853 6.380095 AGTAGAGTTACGCTTTCTCCATAG 57.620 41.667 0.00 0.00 34.88 2.23
4869 9854 6.183360 GGAAGTAGAGTTACGCTTTCTCCATA 60.183 42.308 0.00 0.00 34.88 2.74
4870 9855 5.394333 GGAAGTAGAGTTACGCTTTCTCCAT 60.394 44.000 0.00 0.00 34.88 3.41
4871 9856 4.082354 GGAAGTAGAGTTACGCTTTCTCCA 60.082 45.833 0.00 0.00 34.88 3.86
4872 9857 4.158209 AGGAAGTAGAGTTACGCTTTCTCC 59.842 45.833 0.00 0.00 34.88 3.71
4873 9858 5.313520 AGGAAGTAGAGTTACGCTTTCTC 57.686 43.478 0.00 0.00 34.88 2.87
4874 9859 5.725325 AAGGAAGTAGAGTTACGCTTTCT 57.275 39.130 0.00 0.00 34.88 2.52
4875 9860 5.120363 CCAAAGGAAGTAGAGTTACGCTTTC 59.880 44.000 0.00 0.00 34.88 2.62
4876 9861 4.995487 CCAAAGGAAGTAGAGTTACGCTTT 59.005 41.667 0.00 0.00 34.88 3.51
4877 9862 4.566987 CCAAAGGAAGTAGAGTTACGCTT 58.433 43.478 0.00 0.00 34.88 4.68
4878 9863 4.189639 CCAAAGGAAGTAGAGTTACGCT 57.810 45.455 0.00 0.00 34.88 5.07
5194 10179 9.860650 TTGGTTATGATATTTACCAGTTGCTAT 57.139 29.630 0.00 0.00 41.35 2.97
5195 10180 9.337396 CTTGGTTATGATATTTACCAGTTGCTA 57.663 33.333 0.00 0.00 41.35 3.49
5196 10181 7.201821 GCTTGGTTATGATATTTACCAGTTGCT 60.202 37.037 0.00 0.00 41.35 3.91
5197 10182 6.918022 GCTTGGTTATGATATTTACCAGTTGC 59.082 38.462 0.00 0.00 41.35 4.17
5198 10183 7.995289 TGCTTGGTTATGATATTTACCAGTTG 58.005 34.615 0.00 0.00 41.35 3.16
5199 10184 7.834181 ACTGCTTGGTTATGATATTTACCAGTT 59.166 33.333 0.00 0.00 41.35 3.16
5200 10185 7.346471 ACTGCTTGGTTATGATATTTACCAGT 58.654 34.615 0.00 0.00 41.35 4.00
5201 10186 7.807977 ACTGCTTGGTTATGATATTTACCAG 57.192 36.000 0.00 0.00 41.35 4.00
5202 10187 8.465999 CAAACTGCTTGGTTATGATATTTACCA 58.534 33.333 0.00 0.00 38.82 3.25
5203 10188 8.466798 ACAAACTGCTTGGTTATGATATTTACC 58.533 33.333 0.00 0.00 39.56 2.85
5206 10191 8.466798 GGTACAAACTGCTTGGTTATGATATTT 58.533 33.333 0.00 0.00 39.56 1.40
5207 10192 7.834181 AGGTACAAACTGCTTGGTTATGATATT 59.166 33.333 0.00 0.00 39.56 1.28
5208 10193 7.346471 AGGTACAAACTGCTTGGTTATGATAT 58.654 34.615 0.00 0.00 39.56 1.63
5209 10194 6.717289 AGGTACAAACTGCTTGGTTATGATA 58.283 36.000 0.00 0.00 39.56 2.15
5210 10195 5.570320 AGGTACAAACTGCTTGGTTATGAT 58.430 37.500 0.00 0.00 39.56 2.45
5211 10196 4.980573 AGGTACAAACTGCTTGGTTATGA 58.019 39.130 0.00 0.00 39.56 2.15
5212 10197 6.811253 TTAGGTACAAACTGCTTGGTTATG 57.189 37.500 0.00 0.00 39.56 1.90
5213 10198 7.826918 TTTTAGGTACAAACTGCTTGGTTAT 57.173 32.000 0.00 0.00 39.56 1.89
5214 10199 7.642082 TTTTTAGGTACAAACTGCTTGGTTA 57.358 32.000 0.00 0.00 39.56 2.85
5215 10200 6.532988 TTTTTAGGTACAAACTGCTTGGTT 57.467 33.333 0.00 0.00 39.56 3.67
5216 10201 6.724893 ATTTTTAGGTACAAACTGCTTGGT 57.275 33.333 0.00 0.00 39.56 3.67
5217 10202 6.806739 GCTATTTTTAGGTACAAACTGCTTGG 59.193 38.462 0.00 0.00 39.56 3.61
5218 10203 6.806739 GGCTATTTTTAGGTACAAACTGCTTG 59.193 38.462 0.00 0.00 41.19 4.01
5219 10204 6.719829 AGGCTATTTTTAGGTACAAACTGCTT 59.280 34.615 0.00 0.00 0.00 3.91
5220 10205 6.151144 CAGGCTATTTTTAGGTACAAACTGCT 59.849 38.462 0.00 0.00 0.00 4.24
5221 10206 6.072119 ACAGGCTATTTTTAGGTACAAACTGC 60.072 38.462 0.00 0.00 0.00 4.40
5222 10207 7.448748 ACAGGCTATTTTTAGGTACAAACTG 57.551 36.000 0.00 0.00 0.00 3.16
5223 10208 7.609146 GGTACAGGCTATTTTTAGGTACAAACT 59.391 37.037 8.98 0.00 33.22 2.66
5224 10209 7.609146 AGGTACAGGCTATTTTTAGGTACAAAC 59.391 37.037 8.98 0.00 33.22 2.93
5225 10210 7.692172 AGGTACAGGCTATTTTTAGGTACAAA 58.308 34.615 8.98 0.00 33.22 2.83
5226 10211 7.261688 AGGTACAGGCTATTTTTAGGTACAA 57.738 36.000 8.98 0.00 33.22 2.41
5227 10212 6.879367 AGGTACAGGCTATTTTTAGGTACA 57.121 37.500 8.98 0.00 33.22 2.90
5228 10213 7.333323 TCAAGGTACAGGCTATTTTTAGGTAC 58.667 38.462 0.00 0.00 0.00 3.34
5229 10214 7.499200 TCAAGGTACAGGCTATTTTTAGGTA 57.501 36.000 0.00 0.00 0.00 3.08
5230 10215 6.382919 TCAAGGTACAGGCTATTTTTAGGT 57.617 37.500 0.00 0.00 0.00 3.08
5231 10216 6.828785 ACATCAAGGTACAGGCTATTTTTAGG 59.171 38.462 0.00 0.00 0.00 2.69
5232 10217 7.865706 ACATCAAGGTACAGGCTATTTTTAG 57.134 36.000 0.00 0.00 0.00 1.85
5233 10218 7.338449 GGAACATCAAGGTACAGGCTATTTTTA 59.662 37.037 0.00 0.00 0.00 1.52
5234 10219 6.152831 GGAACATCAAGGTACAGGCTATTTTT 59.847 38.462 0.00 0.00 0.00 1.94
5235 10220 5.652452 GGAACATCAAGGTACAGGCTATTTT 59.348 40.000 0.00 0.00 0.00 1.82
5236 10221 5.193679 GGAACATCAAGGTACAGGCTATTT 58.806 41.667 0.00 0.00 0.00 1.40
5237 10222 4.227300 TGGAACATCAAGGTACAGGCTATT 59.773 41.667 0.00 0.00 0.00 1.73
5238 10223 3.780294 TGGAACATCAAGGTACAGGCTAT 59.220 43.478 0.00 0.00 0.00 2.97
5239 10224 3.178046 TGGAACATCAAGGTACAGGCTA 58.822 45.455 0.00 0.00 0.00 3.93
5240 10225 1.985159 TGGAACATCAAGGTACAGGCT 59.015 47.619 0.00 0.00 0.00 4.58
5241 10226 2.027192 TCTGGAACATCAAGGTACAGGC 60.027 50.000 0.00 0.00 38.20 4.85
5242 10227 3.981071 TCTGGAACATCAAGGTACAGG 57.019 47.619 0.00 0.00 38.20 4.00
5243 10228 6.878317 TCTAATCTGGAACATCAAGGTACAG 58.122 40.000 0.00 0.00 38.20 2.74
5244 10229 6.867519 TCTAATCTGGAACATCAAGGTACA 57.132 37.500 0.00 0.00 38.20 2.90
5245 10230 6.763610 CCTTCTAATCTGGAACATCAAGGTAC 59.236 42.308 0.00 0.00 38.20 3.34
5246 10231 6.632672 GCCTTCTAATCTGGAACATCAAGGTA 60.633 42.308 0.00 0.00 38.20 3.08
5247 10232 5.749462 CCTTCTAATCTGGAACATCAAGGT 58.251 41.667 0.00 0.00 38.20 3.50
5248 10233 4.578105 GCCTTCTAATCTGGAACATCAAGG 59.422 45.833 0.00 0.00 38.20 3.61
5249 10234 5.435291 AGCCTTCTAATCTGGAACATCAAG 58.565 41.667 0.00 0.00 38.20 3.02
5250 10235 5.441718 AGCCTTCTAATCTGGAACATCAA 57.558 39.130 0.00 0.00 38.20 2.57
5251 10236 5.441718 AAGCCTTCTAATCTGGAACATCA 57.558 39.130 0.00 0.00 38.20 3.07
5252 10237 7.449247 AGATAAGCCTTCTAATCTGGAACATC 58.551 38.462 0.00 0.00 38.20 3.06
5253 10238 7.385894 AGATAAGCCTTCTAATCTGGAACAT 57.614 36.000 0.00 0.00 38.20 2.71
5254 10239 6.814954 AGATAAGCCTTCTAATCTGGAACA 57.185 37.500 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.