Multiple sequence alignment - TraesCS6D01G333600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G333600 chr6D 100.000 2613 0 0 1 2613 435964238 435961626 0.000000e+00 4826.0
1 TraesCS6D01G333600 chr6D 83.219 1019 96 50 736 1705 435711447 435712439 0.000000e+00 865.0
2 TraesCS6D01G333600 chr6D 78.496 1237 120 79 760 1914 435763536 435764708 0.000000e+00 676.0
3 TraesCS6D01G333600 chr6D 81.818 792 81 34 1166 1899 435749971 435750757 8.000000e-170 606.0
4 TraesCS6D01G333600 chr6D 83.264 478 36 22 996 1468 435351112 435351550 1.460000e-107 399.0
5 TraesCS6D01G333600 chr6D 77.624 362 36 21 760 1090 435749611 435749958 7.430000e-41 178.0
6 TraesCS6D01G333600 chr6D 81.395 215 15 8 895 1084 435832423 435832209 4.500000e-33 152.0
7 TraesCS6D01G333600 chr6D 84.112 107 13 4 736 841 435810373 435810270 1.650000e-17 100.0
8 TraesCS6D01G333600 chr6D 79.195 149 23 5 735 879 435832611 435832467 2.140000e-16 97.1
9 TraesCS6D01G333600 chr6B 91.542 1336 70 15 572 1883 658578852 658577536 0.000000e+00 1801.0
10 TraesCS6D01G333600 chr6B 92.794 569 24 12 2053 2613 658563004 658562445 0.000000e+00 808.0
11 TraesCS6D01G333600 chr6B 82.213 1012 104 49 736 1705 658477131 658478108 0.000000e+00 802.0
12 TraesCS6D01G333600 chr6B 82.213 1012 104 49 736 1705 658495916 658496893 0.000000e+00 802.0
13 TraesCS6D01G333600 chr6B 82.115 1012 105 49 736 1705 658515067 658516044 0.000000e+00 797.0
14 TraesCS6D01G333600 chr6B 81.189 1127 85 63 757 1809 658530345 658531418 0.000000e+00 789.0
15 TraesCS6D01G333600 chr6B 90.374 187 5 2 1882 2055 658563230 658563044 1.560000e-57 233.0
16 TraesCS6D01G333600 chr6B 85.106 235 17 5 996 1227 658403064 658403283 9.410000e-55 224.0
17 TraesCS6D01G333600 chr6B 88.028 142 11 4 437 573 658579024 658578884 2.080000e-36 163.0
18 TraesCS6D01G333600 chr6B 94.737 38 2 0 899 936 658402946 658402983 2.810000e-05 60.2
19 TraesCS6D01G333600 chr6A 81.360 1191 130 61 810 1937 582511134 582512295 0.000000e+00 885.0
20 TraesCS6D01G333600 chr6A 89.608 587 33 9 1245 1812 582920926 582920349 0.000000e+00 721.0
21 TraesCS6D01G333600 chr6A 86.184 608 44 24 1111 1704 582516590 582517171 2.860000e-174 621.0
22 TraesCS6D01G333600 chr6A 87.074 557 48 13 1166 1703 582631211 582630660 2.220000e-170 608.0
23 TraesCS6D01G333600 chr6A 80.102 784 85 30 895 1628 582638947 582638185 3.850000e-143 518.0
24 TraesCS6D01G333600 chr6A 85.934 391 44 5 2224 2612 582842696 582842315 8.710000e-110 407.0
25 TraesCS6D01G333600 chr6A 93.525 139 7 2 1825 1961 582918297 582918159 3.410000e-49 206.0
26 TraesCS6D01G333600 chr6A 81.509 265 28 13 846 1090 582516342 582516605 5.700000e-47 198.0
27 TraesCS6D01G333600 chr6A 86.316 95 4 5 996 1090 582264809 582264894 7.700000e-16 95.3
28 TraesCS6D01G333600 chr6A 78.571 154 20 6 735 879 582639141 582638992 3.580000e-14 89.8
29 TraesCS6D01G333600 chr6A 94.118 51 2 1 1949 1998 582842795 582842745 2.790000e-10 76.8
30 TraesCS6D01G333600 chr6A 87.719 57 6 1 1708 1764 582638114 582638059 6.040000e-07 65.8
31 TraesCS6D01G333600 chr6A 94.872 39 1 1 899 936 582264695 582264733 2.810000e-05 60.2
32 TraesCS6D01G333600 chrUn 80.416 817 94 38 736 1513 389578036 389577247 1.760000e-156 562.0
33 TraesCS6D01G333600 chrUn 80.416 817 94 38 736 1513 465805808 465805019 1.760000e-156 562.0
34 TraesCS6D01G333600 chr1A 95.455 242 9 2 3 242 549617511 549617752 4.080000e-103 385.0
35 TraesCS6D01G333600 chr1A 90.476 252 15 4 1 243 549487565 549487314 9.020000e-85 324.0
36 TraesCS6D01G333600 chr7D 93.333 240 14 2 1 238 32122248 32122009 1.150000e-93 353.0
37 TraesCS6D01G333600 chr5B 92.623 244 16 2 1 243 471383495 471383737 1.490000e-92 350.0
38 TraesCS6D01G333600 chr3D 92.213 244 17 2 1 243 445109339 445109097 6.920000e-91 344.0
39 TraesCS6D01G333600 chr7A 91.213 239 18 3 7 244 547108181 547107945 3.240000e-84 322.0
40 TraesCS6D01G333600 chr1B 88.235 238 24 4 1 237 13428378 13428612 5.510000e-72 281.0
41 TraesCS6D01G333600 chr1D 92.473 186 12 2 1 184 491426436 491426251 5.540000e-67 265.0
42 TraesCS6D01G333600 chr1D 91.279 172 14 1 73 243 26391411 26391240 1.560000e-57 233.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G333600 chr6D 435961626 435964238 2612 True 4826.000000 4826 100.000000 1 2613 1 chr6D.!!$R2 2612
1 TraesCS6D01G333600 chr6D 435711447 435712439 992 False 865.000000 865 83.219000 736 1705 1 chr6D.!!$F2 969
2 TraesCS6D01G333600 chr6D 435763536 435764708 1172 False 676.000000 676 78.496000 760 1914 1 chr6D.!!$F3 1154
3 TraesCS6D01G333600 chr6D 435749611 435750757 1146 False 392.000000 606 79.721000 760 1899 2 chr6D.!!$F4 1139
4 TraesCS6D01G333600 chr6B 658577536 658579024 1488 True 982.000000 1801 89.785000 437 1883 2 chr6B.!!$R2 1446
5 TraesCS6D01G333600 chr6B 658477131 658478108 977 False 802.000000 802 82.213000 736 1705 1 chr6B.!!$F1 969
6 TraesCS6D01G333600 chr6B 658495916 658496893 977 False 802.000000 802 82.213000 736 1705 1 chr6B.!!$F2 969
7 TraesCS6D01G333600 chr6B 658515067 658516044 977 False 797.000000 797 82.115000 736 1705 1 chr6B.!!$F3 969
8 TraesCS6D01G333600 chr6B 658530345 658531418 1073 False 789.000000 789 81.189000 757 1809 1 chr6B.!!$F4 1052
9 TraesCS6D01G333600 chr6B 658562445 658563230 785 True 520.500000 808 91.584000 1882 2613 2 chr6B.!!$R1 731
10 TraesCS6D01G333600 chr6A 582511134 582512295 1161 False 885.000000 885 81.360000 810 1937 1 chr6A.!!$F1 1127
11 TraesCS6D01G333600 chr6A 582630660 582631211 551 True 608.000000 608 87.074000 1166 1703 1 chr6A.!!$R1 537
12 TraesCS6D01G333600 chr6A 582918159 582920926 2767 True 463.500000 721 91.566500 1245 1961 2 chr6A.!!$R4 716
13 TraesCS6D01G333600 chr6A 582516342 582517171 829 False 409.500000 621 83.846500 846 1704 2 chr6A.!!$F3 858
14 TraesCS6D01G333600 chr6A 582638059 582639141 1082 True 224.533333 518 82.130667 735 1764 3 chr6A.!!$R2 1029
15 TraesCS6D01G333600 chrUn 389577247 389578036 789 True 562.000000 562 80.416000 736 1513 1 chrUn.!!$R1 777
16 TraesCS6D01G333600 chrUn 465805019 465805808 789 True 562.000000 562 80.416000 736 1513 1 chrUn.!!$R2 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
358 359 0.035317 CTGTAGCCAACCACTGAGCA 59.965 55.0 0.0 0.0 0.0 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1636 1921 0.106918 ACCGGCACCTCAAACTTTGA 60.107 50.0 0.0 4.16 38.17 2.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 2.841988 GAGGGCAGGCGAGAGGAT 60.842 66.667 0.00 0.00 0.00 3.24
38 39 3.160047 AGGGCAGGCGAGAGGATG 61.160 66.667 0.00 0.00 0.00 3.51
39 40 3.157252 GGGCAGGCGAGAGGATGA 61.157 66.667 0.00 0.00 0.00 2.92
40 41 2.420890 GGCAGGCGAGAGGATGAG 59.579 66.667 0.00 0.00 0.00 2.90
41 42 2.420890 GCAGGCGAGAGGATGAGG 59.579 66.667 0.00 0.00 0.00 3.86
42 43 3.136750 CAGGCGAGAGGATGAGGG 58.863 66.667 0.00 0.00 0.00 4.30
43 44 2.123077 AGGCGAGAGGATGAGGGG 60.123 66.667 0.00 0.00 0.00 4.79
44 45 3.237741 GGCGAGAGGATGAGGGGG 61.238 72.222 0.00 0.00 0.00 5.40
45 46 3.934962 GCGAGAGGATGAGGGGGC 61.935 72.222 0.00 0.00 0.00 5.80
46 47 3.610669 CGAGAGGATGAGGGGGCG 61.611 72.222 0.00 0.00 0.00 6.13
47 48 2.123251 GAGAGGATGAGGGGGCGA 60.123 66.667 0.00 0.00 0.00 5.54
48 49 1.762460 GAGAGGATGAGGGGGCGAA 60.762 63.158 0.00 0.00 0.00 4.70
49 50 1.753368 GAGAGGATGAGGGGGCGAAG 61.753 65.000 0.00 0.00 0.00 3.79
126 127 3.798511 GAAGGAGGGGCGGGGAAG 61.799 72.222 0.00 0.00 0.00 3.46
130 131 3.798511 GAGGGGCGGGGAAGGAAG 61.799 72.222 0.00 0.00 0.00 3.46
134 135 4.426313 GGCGGGGAAGGAAGGGTG 62.426 72.222 0.00 0.00 0.00 4.61
135 136 4.426313 GCGGGGAAGGAAGGGTGG 62.426 72.222 0.00 0.00 0.00 4.61
136 137 3.728373 CGGGGAAGGAAGGGTGGG 61.728 72.222 0.00 0.00 0.00 4.61
137 138 3.347590 GGGGAAGGAAGGGTGGGG 61.348 72.222 0.00 0.00 0.00 4.96
138 139 3.347590 GGGAAGGAAGGGTGGGGG 61.348 72.222 0.00 0.00 0.00 5.40
139 140 2.204244 GGAAGGAAGGGTGGGGGA 60.204 66.667 0.00 0.00 0.00 4.81
140 141 1.855451 GGAAGGAAGGGTGGGGGAA 60.855 63.158 0.00 0.00 0.00 3.97
141 142 1.691823 GAAGGAAGGGTGGGGGAAG 59.308 63.158 0.00 0.00 0.00 3.46
142 143 1.857348 AAGGAAGGGTGGGGGAAGG 60.857 63.158 0.00 0.00 0.00 3.46
143 144 3.347590 GGAAGGGTGGGGGAAGGG 61.348 72.222 0.00 0.00 0.00 3.95
144 145 3.347590 GAAGGGTGGGGGAAGGGG 61.348 72.222 0.00 0.00 0.00 4.79
205 206 3.787001 GGAGACGGGCAGGGGAAG 61.787 72.222 0.00 0.00 0.00 3.46
206 207 3.787001 GAGACGGGCAGGGGAAGG 61.787 72.222 0.00 0.00 0.00 3.46
207 208 4.658786 AGACGGGCAGGGGAAGGT 62.659 66.667 0.00 0.00 0.00 3.50
208 209 4.410400 GACGGGCAGGGGAAGGTG 62.410 72.222 0.00 0.00 0.00 4.00
249 250 2.043248 GGGAGCGGGTCCTGAGTA 60.043 66.667 24.13 0.00 46.06 2.59
250 251 1.684734 GGGAGCGGGTCCTGAGTAA 60.685 63.158 24.13 0.00 46.06 2.24
251 252 1.516423 GGAGCGGGTCCTGAGTAAC 59.484 63.158 18.68 0.00 42.99 2.50
252 253 0.971447 GGAGCGGGTCCTGAGTAACT 60.971 60.000 18.68 0.00 42.99 2.24
253 254 0.896226 GAGCGGGTCCTGAGTAACTT 59.104 55.000 0.31 0.00 0.00 2.66
254 255 2.097825 GAGCGGGTCCTGAGTAACTTA 58.902 52.381 0.31 0.00 0.00 2.24
255 256 2.494870 GAGCGGGTCCTGAGTAACTTAA 59.505 50.000 0.31 0.00 0.00 1.85
256 257 2.901839 AGCGGGTCCTGAGTAACTTAAA 59.098 45.455 0.31 0.00 0.00 1.52
257 258 3.056035 AGCGGGTCCTGAGTAACTTAAAG 60.056 47.826 0.31 0.00 0.00 1.85
258 259 3.306571 GCGGGTCCTGAGTAACTTAAAGT 60.307 47.826 0.31 0.00 0.00 2.66
259 260 4.492611 CGGGTCCTGAGTAACTTAAAGTC 58.507 47.826 0.00 0.00 0.00 3.01
260 261 4.021719 CGGGTCCTGAGTAACTTAAAGTCA 60.022 45.833 0.00 0.00 0.00 3.41
261 262 5.236282 GGGTCCTGAGTAACTTAAAGTCAC 58.764 45.833 0.00 0.00 0.00 3.67
262 263 5.236282 GGTCCTGAGTAACTTAAAGTCACC 58.764 45.833 0.00 0.00 0.00 4.02
263 264 5.011840 GGTCCTGAGTAACTTAAAGTCACCT 59.988 44.000 0.00 0.00 0.00 4.00
264 265 5.927115 GTCCTGAGTAACTTAAAGTCACCTG 59.073 44.000 0.00 0.00 0.00 4.00
265 266 5.011738 TCCTGAGTAACTTAAAGTCACCTGG 59.988 44.000 0.00 0.00 0.00 4.45
266 267 5.221661 CCTGAGTAACTTAAAGTCACCTGGT 60.222 44.000 0.00 0.00 0.00 4.00
267 268 6.014840 CCTGAGTAACTTAAAGTCACCTGGTA 60.015 42.308 0.00 0.00 0.00 3.25
268 269 6.989659 TGAGTAACTTAAAGTCACCTGGTAG 58.010 40.000 0.00 0.00 0.00 3.18
269 270 5.791666 AGTAACTTAAAGTCACCTGGTAGC 58.208 41.667 0.00 0.00 0.00 3.58
270 271 3.697619 ACTTAAAGTCACCTGGTAGCC 57.302 47.619 0.00 0.00 0.00 3.93
271 272 3.248888 ACTTAAAGTCACCTGGTAGCCT 58.751 45.455 0.00 0.00 0.00 4.58
272 273 3.651423 ACTTAAAGTCACCTGGTAGCCTT 59.349 43.478 0.00 0.00 0.00 4.35
273 274 4.842380 ACTTAAAGTCACCTGGTAGCCTTA 59.158 41.667 0.00 0.00 0.00 2.69
274 275 3.983044 AAAGTCACCTGGTAGCCTTAG 57.017 47.619 0.00 0.00 0.00 2.18
275 276 2.921834 AGTCACCTGGTAGCCTTAGA 57.078 50.000 0.00 0.00 0.00 2.10
276 277 3.185880 AGTCACCTGGTAGCCTTAGAA 57.814 47.619 0.00 0.00 0.00 2.10
277 278 3.517612 AGTCACCTGGTAGCCTTAGAAA 58.482 45.455 0.00 0.00 0.00 2.52
278 279 3.908103 AGTCACCTGGTAGCCTTAGAAAA 59.092 43.478 0.00 0.00 0.00 2.29
279 280 4.020128 AGTCACCTGGTAGCCTTAGAAAAG 60.020 45.833 0.00 0.00 0.00 2.27
280 281 3.908103 TCACCTGGTAGCCTTAGAAAAGT 59.092 43.478 0.00 0.00 0.00 2.66
281 282 5.046807 GTCACCTGGTAGCCTTAGAAAAGTA 60.047 44.000 0.00 0.00 0.00 2.24
282 283 5.724854 TCACCTGGTAGCCTTAGAAAAGTAT 59.275 40.000 0.00 0.00 0.00 2.12
283 284 6.899075 TCACCTGGTAGCCTTAGAAAAGTATA 59.101 38.462 0.00 0.00 0.00 1.47
284 285 7.069578 TCACCTGGTAGCCTTAGAAAAGTATAG 59.930 40.741 0.00 0.00 0.00 1.31
285 286 6.326843 ACCTGGTAGCCTTAGAAAAGTATAGG 59.673 42.308 0.00 0.00 0.00 2.57
286 287 6.326843 CCTGGTAGCCTTAGAAAAGTATAGGT 59.673 42.308 0.00 0.00 0.00 3.08
287 288 7.120923 TGGTAGCCTTAGAAAAGTATAGGTG 57.879 40.000 0.00 0.00 0.00 4.00
288 289 5.990386 GGTAGCCTTAGAAAAGTATAGGTGC 59.010 44.000 0.00 0.00 0.00 5.01
289 290 5.959583 AGCCTTAGAAAAGTATAGGTGCT 57.040 39.130 0.00 0.00 0.00 4.40
290 291 6.314899 AGCCTTAGAAAAGTATAGGTGCTT 57.685 37.500 0.00 0.00 0.00 3.91
291 292 6.350103 AGCCTTAGAAAAGTATAGGTGCTTC 58.650 40.000 0.00 0.00 29.44 3.86
292 293 6.070194 AGCCTTAGAAAAGTATAGGTGCTTCA 60.070 38.462 0.00 0.00 29.44 3.02
293 294 6.598064 GCCTTAGAAAAGTATAGGTGCTTCAA 59.402 38.462 0.00 0.00 29.44 2.69
294 295 7.414208 GCCTTAGAAAAGTATAGGTGCTTCAAC 60.414 40.741 0.00 0.00 29.44 3.18
295 296 7.606456 CCTTAGAAAAGTATAGGTGCTTCAACA 59.394 37.037 0.00 0.00 29.44 3.33
296 297 8.911918 TTAGAAAAGTATAGGTGCTTCAACAA 57.088 30.769 0.00 0.00 29.44 2.83
297 298 7.203255 AGAAAAGTATAGGTGCTTCAACAAC 57.797 36.000 0.00 0.00 29.44 3.32
298 299 5.607119 AAAGTATAGGTGCTTCAACAACG 57.393 39.130 0.00 0.00 30.49 4.10
299 300 4.530710 AGTATAGGTGCTTCAACAACGA 57.469 40.909 0.00 0.00 30.49 3.85
300 301 5.086104 AGTATAGGTGCTTCAACAACGAT 57.914 39.130 0.00 0.00 30.49 3.73
301 302 4.870426 AGTATAGGTGCTTCAACAACGATG 59.130 41.667 0.00 0.00 30.49 3.84
302 303 0.593128 AGGTGCTTCAACAACGATGC 59.407 50.000 0.00 0.00 36.78 3.91
303 304 0.593128 GGTGCTTCAACAACGATGCT 59.407 50.000 0.00 0.00 37.08 3.79
304 305 1.001378 GGTGCTTCAACAACGATGCTT 60.001 47.619 0.00 0.00 37.08 3.91
305 306 2.543653 GGTGCTTCAACAACGATGCTTT 60.544 45.455 0.00 0.00 37.08 3.51
306 307 2.721090 GTGCTTCAACAACGATGCTTTC 59.279 45.455 0.00 0.00 37.08 2.62
307 308 2.357323 TGCTTCAACAACGATGCTTTCA 59.643 40.909 0.00 0.00 37.08 2.69
308 309 2.975851 GCTTCAACAACGATGCTTTCAG 59.024 45.455 0.00 0.00 34.23 3.02
309 310 3.303990 GCTTCAACAACGATGCTTTCAGA 60.304 43.478 0.00 0.00 34.23 3.27
310 311 4.789481 GCTTCAACAACGATGCTTTCAGAA 60.789 41.667 0.00 0.00 34.23 3.02
311 312 4.891627 TCAACAACGATGCTTTCAGAAA 57.108 36.364 0.00 0.00 0.00 2.52
312 313 4.847633 TCAACAACGATGCTTTCAGAAAG 58.152 39.130 17.46 17.46 41.46 2.62
313 314 3.904136 ACAACGATGCTTTCAGAAAGG 57.096 42.857 22.04 9.58 38.93 3.11
314 315 2.554032 ACAACGATGCTTTCAGAAAGGG 59.446 45.455 22.04 1.74 38.93 3.95
315 316 2.813754 CAACGATGCTTTCAGAAAGGGA 59.186 45.455 22.04 6.95 38.93 4.20
316 317 3.140325 ACGATGCTTTCAGAAAGGGAA 57.860 42.857 22.04 0.00 38.93 3.97
317 318 2.814336 ACGATGCTTTCAGAAAGGGAAC 59.186 45.455 22.04 7.92 38.93 3.62
318 319 2.159653 CGATGCTTTCAGAAAGGGAACG 60.160 50.000 22.04 11.77 38.93 3.95
319 320 2.631160 TGCTTTCAGAAAGGGAACGA 57.369 45.000 22.04 0.00 38.93 3.85
320 321 2.218603 TGCTTTCAGAAAGGGAACGAC 58.781 47.619 22.04 6.32 38.93 4.34
321 322 2.218603 GCTTTCAGAAAGGGAACGACA 58.781 47.619 22.04 0.00 38.93 4.35
322 323 2.031944 GCTTTCAGAAAGGGAACGACAC 60.032 50.000 22.04 1.13 38.93 3.67
323 324 2.992124 TTCAGAAAGGGAACGACACA 57.008 45.000 0.00 0.00 0.00 3.72
324 325 3.485463 TTCAGAAAGGGAACGACACAT 57.515 42.857 0.00 0.00 0.00 3.21
325 326 2.766313 TCAGAAAGGGAACGACACATG 58.234 47.619 0.00 0.00 0.00 3.21
326 327 2.367241 TCAGAAAGGGAACGACACATGA 59.633 45.455 0.00 0.00 0.00 3.07
327 328 2.738846 CAGAAAGGGAACGACACATGAG 59.261 50.000 0.00 0.00 0.00 2.90
328 329 1.464997 GAAAGGGAACGACACATGAGC 59.535 52.381 0.00 0.00 0.00 4.26
329 330 0.670546 AAGGGAACGACACATGAGCG 60.671 55.000 0.00 2.43 0.00 5.03
330 331 1.374252 GGGAACGACACATGAGCGT 60.374 57.895 0.00 3.12 40.35 5.07
331 332 1.352156 GGGAACGACACATGAGCGTC 61.352 60.000 0.00 2.07 37.26 5.19
335 336 4.552278 GACACATGAGCGTCGTCA 57.448 55.556 0.00 0.00 0.00 4.35
336 337 3.036026 GACACATGAGCGTCGTCAT 57.964 52.632 0.00 0.00 37.68 3.06
337 338 0.917259 GACACATGAGCGTCGTCATC 59.083 55.000 0.00 0.00 34.81 2.92
338 339 0.798389 ACACATGAGCGTCGTCATCG 60.798 55.000 0.00 5.38 34.81 3.84
345 346 3.589982 CGTCGTCATCGCTGTAGC 58.410 61.111 0.00 0.00 36.96 3.58
346 347 1.939785 CGTCGTCATCGCTGTAGCC 60.940 63.158 0.00 0.00 37.91 3.93
347 348 1.138883 GTCGTCATCGCTGTAGCCA 59.861 57.895 0.00 0.00 37.91 4.75
348 349 0.457853 GTCGTCATCGCTGTAGCCAA 60.458 55.000 0.00 0.00 37.91 4.52
349 350 0.457853 TCGTCATCGCTGTAGCCAAC 60.458 55.000 0.00 0.00 37.91 3.77
350 351 1.421410 CGTCATCGCTGTAGCCAACC 61.421 60.000 0.00 0.00 37.91 3.77
351 352 0.391130 GTCATCGCTGTAGCCAACCA 60.391 55.000 0.00 0.00 37.91 3.67
352 353 0.391130 TCATCGCTGTAGCCAACCAC 60.391 55.000 0.00 0.00 37.91 4.16
353 354 0.391661 CATCGCTGTAGCCAACCACT 60.392 55.000 0.00 0.00 37.91 4.00
354 355 0.391661 ATCGCTGTAGCCAACCACTG 60.392 55.000 0.00 0.00 37.91 3.66
355 356 1.005037 CGCTGTAGCCAACCACTGA 60.005 57.895 0.00 0.00 37.91 3.41
356 357 1.016130 CGCTGTAGCCAACCACTGAG 61.016 60.000 0.00 0.00 37.91 3.35
357 358 1.301677 GCTGTAGCCAACCACTGAGC 61.302 60.000 0.00 0.00 34.31 4.26
358 359 0.035317 CTGTAGCCAACCACTGAGCA 59.965 55.000 0.00 0.00 0.00 4.26
359 360 0.692476 TGTAGCCAACCACTGAGCAT 59.308 50.000 0.00 0.00 0.00 3.79
360 361 1.089920 GTAGCCAACCACTGAGCATG 58.910 55.000 0.00 0.00 0.00 4.06
361 362 0.983467 TAGCCAACCACTGAGCATGA 59.017 50.000 0.00 0.00 0.00 3.07
362 363 0.330604 AGCCAACCACTGAGCATGAT 59.669 50.000 0.00 0.00 0.00 2.45
363 364 0.737219 GCCAACCACTGAGCATGATC 59.263 55.000 3.40 3.40 0.00 2.92
364 365 1.951895 GCCAACCACTGAGCATGATCA 60.952 52.381 13.91 13.91 0.00 2.92
365 366 2.651455 CCAACCACTGAGCATGATCAT 58.349 47.619 15.09 1.18 0.00 2.45
366 367 2.357952 CCAACCACTGAGCATGATCATG 59.642 50.000 28.04 28.04 41.60 3.07
367 368 3.275999 CAACCACTGAGCATGATCATGA 58.724 45.455 34.65 16.18 41.20 3.07
368 369 3.639672 ACCACTGAGCATGATCATGAA 57.360 42.857 34.65 19.48 41.20 2.57
369 370 4.166246 ACCACTGAGCATGATCATGAAT 57.834 40.909 34.65 23.22 41.20 2.57
370 371 4.533815 ACCACTGAGCATGATCATGAATT 58.466 39.130 34.65 20.47 41.20 2.17
371 372 4.954202 ACCACTGAGCATGATCATGAATTT 59.046 37.500 34.65 18.21 41.20 1.82
372 373 5.421056 ACCACTGAGCATGATCATGAATTTT 59.579 36.000 34.65 15.98 41.20 1.82
373 374 5.977725 CCACTGAGCATGATCATGAATTTTC 59.022 40.000 34.65 22.11 41.20 2.29
374 375 6.405397 CCACTGAGCATGATCATGAATTTTCA 60.405 38.462 34.65 24.58 41.20 2.69
375 376 6.472486 CACTGAGCATGATCATGAATTTTCAC 59.528 38.462 34.65 16.63 41.20 3.18
376 377 6.377429 ACTGAGCATGATCATGAATTTTCACT 59.623 34.615 34.65 20.59 41.20 3.41
377 378 7.093902 ACTGAGCATGATCATGAATTTTCACTT 60.094 33.333 34.65 14.87 41.20 3.16
378 379 7.033185 TGAGCATGATCATGAATTTTCACTTG 58.967 34.615 34.65 9.55 41.20 3.16
379 380 7.094118 TGAGCATGATCATGAATTTTCACTTGA 60.094 33.333 34.65 10.70 41.20 3.02
380 381 7.608153 AGCATGATCATGAATTTTCACTTGAA 58.392 30.769 34.65 0.00 41.20 2.69
381 382 7.759886 AGCATGATCATGAATTTTCACTTGAAG 59.240 33.333 34.65 6.61 41.20 3.02
382 383 7.758076 GCATGATCATGAATTTTCACTTGAAGA 59.242 33.333 34.65 0.00 41.20 2.87
383 384 9.290483 CATGATCATGAATTTTCACTTGAAGAG 57.710 33.333 28.37 0.00 41.20 2.85
384 385 7.823665 TGATCATGAATTTTCACTTGAAGAGG 58.176 34.615 0.00 0.00 40.49 3.69
385 386 7.666804 TGATCATGAATTTTCACTTGAAGAGGA 59.333 33.333 0.00 0.00 40.49 3.71
386 387 7.444629 TCATGAATTTTCACTTGAAGAGGAG 57.555 36.000 0.00 0.00 40.49 3.69
387 388 7.000472 TCATGAATTTTCACTTGAAGAGGAGT 59.000 34.615 0.00 0.00 40.49 3.85
388 389 7.503566 TCATGAATTTTCACTTGAAGAGGAGTT 59.496 33.333 0.00 0.00 40.49 3.01
389 390 7.645058 TGAATTTTCACTTGAAGAGGAGTTT 57.355 32.000 0.00 0.00 35.21 2.66
390 391 7.483307 TGAATTTTCACTTGAAGAGGAGTTTG 58.517 34.615 0.00 0.00 35.21 2.93
391 392 7.339212 TGAATTTTCACTTGAAGAGGAGTTTGA 59.661 33.333 0.00 0.00 35.21 2.69
392 393 6.683974 TTTTCACTTGAAGAGGAGTTTGAG 57.316 37.500 0.00 0.00 35.21 3.02
393 394 5.359194 TTCACTTGAAGAGGAGTTTGAGT 57.641 39.130 0.00 0.00 0.00 3.41
394 395 6.479972 TTCACTTGAAGAGGAGTTTGAGTA 57.520 37.500 0.00 0.00 0.00 2.59
395 396 6.479972 TCACTTGAAGAGGAGTTTGAGTAA 57.520 37.500 0.00 0.00 0.00 2.24
396 397 6.884832 TCACTTGAAGAGGAGTTTGAGTAAA 58.115 36.000 0.00 0.00 0.00 2.01
397 398 6.761714 TCACTTGAAGAGGAGTTTGAGTAAAC 59.238 38.462 0.00 0.00 45.13 2.01
409 410 5.772521 GTTTGAGTAAACTCCATGCAATGT 58.227 37.500 7.63 0.00 41.86 2.71
410 411 5.627499 TTGAGTAAACTCCATGCAATGTC 57.373 39.130 7.63 0.00 44.81 3.06
411 412 4.910195 TGAGTAAACTCCATGCAATGTCT 58.090 39.130 7.63 0.00 44.81 3.41
412 413 5.316167 TGAGTAAACTCCATGCAATGTCTT 58.684 37.500 7.63 0.00 44.81 3.01
413 414 5.412594 TGAGTAAACTCCATGCAATGTCTTC 59.587 40.000 7.63 0.00 44.81 2.87
414 415 3.837213 AAACTCCATGCAATGTCTTCG 57.163 42.857 0.00 0.00 44.81 3.79
415 416 2.768253 ACTCCATGCAATGTCTTCGA 57.232 45.000 0.00 0.00 44.81 3.71
416 417 2.350522 ACTCCATGCAATGTCTTCGAC 58.649 47.619 0.00 0.00 44.81 4.20
417 418 2.027745 ACTCCATGCAATGTCTTCGACT 60.028 45.455 0.00 0.00 44.81 4.18
418 419 3.195610 ACTCCATGCAATGTCTTCGACTA 59.804 43.478 0.00 0.00 44.81 2.59
419 420 4.183865 CTCCATGCAATGTCTTCGACTAA 58.816 43.478 0.00 0.00 44.81 2.24
420 421 4.574892 TCCATGCAATGTCTTCGACTAAA 58.425 39.130 0.00 0.00 44.81 1.85
421 422 4.631377 TCCATGCAATGTCTTCGACTAAAG 59.369 41.667 0.00 0.00 44.81 1.85
422 423 4.631377 CCATGCAATGTCTTCGACTAAAGA 59.369 41.667 0.00 0.00 44.81 2.52
423 424 5.122239 CCATGCAATGTCTTCGACTAAAGAA 59.878 40.000 0.00 0.00 44.81 2.52
424 425 6.183360 CCATGCAATGTCTTCGACTAAAGAAT 60.183 38.462 0.00 0.00 44.81 2.40
425 426 6.169419 TGCAATGTCTTCGACTAAAGAATG 57.831 37.500 0.00 0.00 37.04 2.67
426 427 5.700832 TGCAATGTCTTCGACTAAAGAATGT 59.299 36.000 0.00 0.00 37.04 2.71
427 428 6.128553 TGCAATGTCTTCGACTAAAGAATGTC 60.129 38.462 0.00 0.00 37.04 3.06
459 460 2.821991 AGTTTTCACCCTGAGACTCG 57.178 50.000 0.00 0.00 0.00 4.18
463 464 1.587043 TTCACCCTGAGACTCGAGCG 61.587 60.000 13.61 0.00 0.00 5.03
476 477 2.597713 CGAGCGCTTGCACTCAACA 61.598 57.895 13.26 0.00 42.66 3.33
478 479 0.453950 GAGCGCTTGCACTCAACATG 60.454 55.000 13.26 0.00 42.66 3.21
479 480 2.084681 GCGCTTGCACTCAACATGC 61.085 57.895 0.00 0.00 43.68 4.06
491 492 0.442310 CAACATGCGTCACCTAACCG 59.558 55.000 0.00 0.00 0.00 4.44
535 539 0.178975 TCACCTGCCGACCCATTTTT 60.179 50.000 0.00 0.00 0.00 1.94
537 541 0.178975 ACCTGCCGACCCATTTTTCA 60.179 50.000 0.00 0.00 0.00 2.69
538 542 0.243636 CCTGCCGACCCATTTTTCAC 59.756 55.000 0.00 0.00 0.00 3.18
543 549 3.254657 TGCCGACCCATTTTTCACTTTAG 59.745 43.478 0.00 0.00 0.00 1.85
544 550 3.833442 CCGACCCATTTTTCACTTTAGC 58.167 45.455 0.00 0.00 0.00 3.09
549 555 3.501950 CCATTTTTCACTTTAGCGAGCC 58.498 45.455 0.00 0.00 0.00 4.70
565 571 2.680841 CGAGCCGGGTTATGATTTTCAA 59.319 45.455 8.00 0.00 0.00 2.69
626 666 2.633681 ATAACCCGAACGCGCCTACC 62.634 60.000 5.73 0.00 35.83 3.18
631 671 1.143969 CCGAACGCGCCTACCTTTAG 61.144 60.000 5.73 0.00 35.83 1.85
633 673 1.202177 CGAACGCGCCTACCTTTAGTA 60.202 52.381 5.73 0.00 0.00 1.82
641 681 5.169295 GCGCCTACCTTTAGTAATAGGATG 58.831 45.833 10.90 4.99 37.02 3.51
650 690 7.128263 ACCTTTAGTAATAGGATGCCTTTGGTA 59.872 37.037 14.39 0.00 34.61 3.25
651 691 8.164070 CCTTTAGTAATAGGATGCCTTTGGTAT 58.836 37.037 0.00 0.00 34.61 2.73
661 701 8.449423 AGGATGCCTTTGGTATATATAGTTCA 57.551 34.615 0.00 0.00 0.00 3.18
681 721 1.529226 ATTTTCGTTCCATGCCGACA 58.471 45.000 0.61 0.00 31.95 4.35
683 723 1.231958 TTTCGTTCCATGCCGACACC 61.232 55.000 0.61 0.00 31.95 4.16
732 772 4.289527 AAGACGACTTTTGGAAGTGTCCG 61.290 47.826 13.28 7.38 45.88 4.79
740 780 3.074594 GGAAGTGTCCGTTGTGTGT 57.925 52.632 0.00 0.00 33.05 3.72
741 781 0.935196 GGAAGTGTCCGTTGTGTGTC 59.065 55.000 0.00 0.00 33.05 3.67
742 782 1.647346 GAAGTGTCCGTTGTGTGTCA 58.353 50.000 0.00 0.00 0.00 3.58
743 783 2.210116 GAAGTGTCCGTTGTGTGTCAT 58.790 47.619 0.00 0.00 0.00 3.06
744 784 1.865865 AGTGTCCGTTGTGTGTCATC 58.134 50.000 0.00 0.00 0.00 2.92
758 804 3.196469 TGTGTCATCTCATCACCTCTTCC 59.804 47.826 0.00 0.00 0.00 3.46
885 954 2.203167 TAGCGCCTCCGACGATCT 60.203 61.111 2.29 0.00 36.29 2.75
904 1003 4.510038 TCTTATCCCGTCGGCTATAAAC 57.490 45.455 5.50 0.00 0.00 2.01
979 1104 5.779771 AGTCAGGAAGATTTCTGAGAGAACT 59.220 40.000 3.72 0.00 40.24 3.01
1147 1305 3.814268 CCGCTGGTGGGCATTTCG 61.814 66.667 0.00 0.00 0.00 3.46
1254 1430 3.382546 ACTTCTTGCTTCAACACTTGCAT 59.617 39.130 0.00 0.00 35.27 3.96
1546 1794 2.290287 TACTGGGACGCATGGCACT 61.290 57.895 0.00 0.00 0.00 4.40
1639 1924 2.740826 GCGGCCGCTACTTGTCAA 60.741 61.111 41.71 0.00 38.26 3.18
1640 1925 2.322081 GCGGCCGCTACTTGTCAAA 61.322 57.895 41.71 0.00 38.26 2.69
1641 1926 1.787847 CGGCCGCTACTTGTCAAAG 59.212 57.895 14.67 0.00 39.49 2.77
1759 2076 6.920817 TGAATATGGGCTTCTAGTATGTACG 58.079 40.000 0.00 0.00 0.00 3.67
1786 2104 4.844267 ACGTTTTGTGATCTGTACTTTGC 58.156 39.130 0.00 0.00 0.00 3.68
2012 4383 0.249784 TTGTGCGCTACGTGGGTTTA 60.250 50.000 9.73 0.00 0.00 2.01
2022 4393 0.955905 CGTGGGTTTACAGGTTTGGG 59.044 55.000 0.00 0.00 0.00 4.12
2042 4415 3.056821 GGGACAAACACCTATTTCTTGGC 60.057 47.826 0.00 0.00 0.00 4.52
2079 4494 9.986833 ACAAGAAAGCAAATTTTAACATGTTTC 57.013 25.926 17.78 3.42 0.00 2.78
2103 4519 9.901172 TTCTTCTTACCTTCTCTTTTTACAAGT 57.099 29.630 0.00 0.00 0.00 3.16
2220 4640 8.871686 AAAAGGAGCATGTTAACTTAAAACTG 57.128 30.769 7.22 0.00 0.00 3.16
2252 4672 8.707938 AAAGAAATATTGGTTGATAGCTTTGC 57.292 30.769 0.00 0.00 0.00 3.68
2284 4704 2.972713 ACGATTATAGCATGTGGGTCCT 59.027 45.455 0.00 0.00 0.00 3.85
2286 4706 3.679389 GATTATAGCATGTGGGTCCTGG 58.321 50.000 0.00 0.00 0.00 4.45
2290 4710 0.706433 AGCATGTGGGTCCTGGAAAT 59.294 50.000 0.00 0.00 0.00 2.17
2301 4721 2.415512 GTCCTGGAAATGCTAACGTGAC 59.584 50.000 0.00 0.00 0.00 3.67
2319 4739 4.026393 CGTGACGTAATTGTTCACACAAGA 60.026 41.667 13.28 0.00 46.25 3.02
2342 4763 2.093658 TCATTAGAGGAGACGGCCAAAC 60.094 50.000 2.24 0.00 0.00 2.93
2360 4781 1.581954 CCGTTTTGCATGCCGGTAA 59.418 52.632 20.81 4.65 35.78 2.85
2369 4790 1.469079 GCATGCCGGTAATGGTCAAAC 60.469 52.381 17.59 0.69 0.00 2.93
2376 4797 1.639108 GGTAATGGTCAAACCCCTCCT 59.361 52.381 0.00 0.00 37.50 3.69
2383 4804 1.276705 GTCAAACCCCTCCTCACTCTC 59.723 57.143 0.00 0.00 0.00 3.20
2444 4865 2.601314 CTGTTCTTCGTCGTTGTTGTCA 59.399 45.455 0.00 0.00 0.00 3.58
2445 4866 3.191669 TGTTCTTCGTCGTTGTTGTCAT 58.808 40.909 0.00 0.00 0.00 3.06
2507 4928 1.199097 GAATGACGGCGAAACCAATGT 59.801 47.619 16.62 0.00 39.03 2.71
2518 4939 3.443329 CGAAACCAATGTGGATTCCATCA 59.557 43.478 9.01 9.28 43.79 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.841988 ATCCTCTCGCCTGCCCTC 60.842 66.667 0.00 0.00 0.00 4.30
21 22 3.160047 CATCCTCTCGCCTGCCCT 61.160 66.667 0.00 0.00 0.00 5.19
22 23 3.157252 TCATCCTCTCGCCTGCCC 61.157 66.667 0.00 0.00 0.00 5.36
23 24 2.420890 CTCATCCTCTCGCCTGCC 59.579 66.667 0.00 0.00 0.00 4.85
24 25 2.420890 CCTCATCCTCTCGCCTGC 59.579 66.667 0.00 0.00 0.00 4.85
25 26 2.506061 CCCCTCATCCTCTCGCCTG 61.506 68.421 0.00 0.00 0.00 4.85
26 27 2.123077 CCCCTCATCCTCTCGCCT 60.123 66.667 0.00 0.00 0.00 5.52
27 28 3.237741 CCCCCTCATCCTCTCGCC 61.238 72.222 0.00 0.00 0.00 5.54
28 29 3.934962 GCCCCCTCATCCTCTCGC 61.935 72.222 0.00 0.00 0.00 5.03
29 30 3.610669 CGCCCCCTCATCCTCTCG 61.611 72.222 0.00 0.00 0.00 4.04
30 31 1.753368 CTTCGCCCCCTCATCCTCTC 61.753 65.000 0.00 0.00 0.00 3.20
31 32 1.764054 CTTCGCCCCCTCATCCTCT 60.764 63.158 0.00 0.00 0.00 3.69
32 33 2.825264 CTTCGCCCCCTCATCCTC 59.175 66.667 0.00 0.00 0.00 3.71
33 34 3.483869 GCTTCGCCCCCTCATCCT 61.484 66.667 0.00 0.00 0.00 3.24
34 35 4.570874 GGCTTCGCCCCCTCATCC 62.571 72.222 0.00 0.00 44.06 3.51
43 44 4.135153 TCTGCTCTCGGCTTCGCC 62.135 66.667 0.00 0.00 46.75 5.54
44 45 2.581953 CTCTGCTCTCGGCTTCGC 60.582 66.667 0.00 0.00 42.39 4.70
45 46 2.103934 CCTCTGCTCTCGGCTTCG 59.896 66.667 0.00 0.00 42.39 3.79
46 47 2.202864 GCCTCTGCTCTCGGCTTC 60.203 66.667 0.00 0.00 40.62 3.86
47 48 4.140599 CGCCTCTGCTCTCGGCTT 62.141 66.667 0.00 0.00 41.61 4.35
109 110 3.798511 CTTCCCCGCCCCTCCTTC 61.799 72.222 0.00 0.00 0.00 3.46
113 114 3.798511 CTTCCTTCCCCGCCCCTC 61.799 72.222 0.00 0.00 0.00 4.30
117 118 4.426313 CACCCTTCCTTCCCCGCC 62.426 72.222 0.00 0.00 0.00 6.13
118 119 4.426313 CCACCCTTCCTTCCCCGC 62.426 72.222 0.00 0.00 0.00 6.13
119 120 3.728373 CCCACCCTTCCTTCCCCG 61.728 72.222 0.00 0.00 0.00 5.73
120 121 3.347590 CCCCACCCTTCCTTCCCC 61.348 72.222 0.00 0.00 0.00 4.81
121 122 3.347590 CCCCCACCCTTCCTTCCC 61.348 72.222 0.00 0.00 0.00 3.97
122 123 1.855451 TTCCCCCACCCTTCCTTCC 60.855 63.158 0.00 0.00 0.00 3.46
123 124 1.691823 CTTCCCCCACCCTTCCTTC 59.308 63.158 0.00 0.00 0.00 3.46
124 125 1.857348 CCTTCCCCCACCCTTCCTT 60.857 63.158 0.00 0.00 0.00 3.36
125 126 2.204306 CCTTCCCCCACCCTTCCT 60.204 66.667 0.00 0.00 0.00 3.36
126 127 3.347590 CCCTTCCCCCACCCTTCC 61.348 72.222 0.00 0.00 0.00 3.46
127 128 3.347590 CCCCTTCCCCCACCCTTC 61.348 72.222 0.00 0.00 0.00 3.46
188 189 3.787001 CTTCCCCTGCCCGTCTCC 61.787 72.222 0.00 0.00 0.00 3.71
189 190 3.787001 CCTTCCCCTGCCCGTCTC 61.787 72.222 0.00 0.00 0.00 3.36
190 191 4.658786 ACCTTCCCCTGCCCGTCT 62.659 66.667 0.00 0.00 0.00 4.18
191 192 4.410400 CACCTTCCCCTGCCCGTC 62.410 72.222 0.00 0.00 0.00 4.79
232 233 1.684734 TTACTCAGGACCCGCTCCC 60.685 63.158 0.00 0.00 40.53 4.30
233 234 0.971447 AGTTACTCAGGACCCGCTCC 60.971 60.000 0.00 0.00 39.81 4.70
234 235 0.896226 AAGTTACTCAGGACCCGCTC 59.104 55.000 0.00 0.00 0.00 5.03
235 236 2.226962 TAAGTTACTCAGGACCCGCT 57.773 50.000 0.00 0.00 0.00 5.52
236 237 3.259902 CTTTAAGTTACTCAGGACCCGC 58.740 50.000 0.00 0.00 0.00 6.13
237 238 4.021719 TGACTTTAAGTTACTCAGGACCCG 60.022 45.833 0.00 0.00 0.00 5.28
238 239 5.236282 GTGACTTTAAGTTACTCAGGACCC 58.764 45.833 11.95 0.00 32.62 4.46
239 240 5.011840 AGGTGACTTTAAGTTACTCAGGACC 59.988 44.000 17.34 2.03 37.44 4.46
240 241 5.927115 CAGGTGACTTTAAGTTACTCAGGAC 59.073 44.000 17.34 2.68 40.21 3.85
241 242 5.011738 CCAGGTGACTTTAAGTTACTCAGGA 59.988 44.000 17.34 0.00 40.21 3.86
242 243 5.221661 ACCAGGTGACTTTAAGTTACTCAGG 60.222 44.000 17.34 17.12 40.21 3.86
243 244 5.855045 ACCAGGTGACTTTAAGTTACTCAG 58.145 41.667 17.34 9.85 40.21 3.35
244 245 5.881923 ACCAGGTGACTTTAAGTTACTCA 57.118 39.130 17.34 0.61 40.21 3.41
245 246 5.868258 GCTACCAGGTGACTTTAAGTTACTC 59.132 44.000 17.34 9.32 40.21 2.59
246 247 5.279859 GGCTACCAGGTGACTTTAAGTTACT 60.280 44.000 17.34 5.82 40.21 2.24
247 248 4.934001 GGCTACCAGGTGACTTTAAGTTAC 59.066 45.833 10.96 10.96 40.21 2.50
248 249 4.842380 AGGCTACCAGGTGACTTTAAGTTA 59.158 41.667 0.76 0.00 40.21 2.24
249 250 3.651423 AGGCTACCAGGTGACTTTAAGTT 59.349 43.478 0.76 0.00 40.21 2.66
250 251 3.248888 AGGCTACCAGGTGACTTTAAGT 58.751 45.455 0.76 0.00 40.21 2.24
251 252 3.983044 AGGCTACCAGGTGACTTTAAG 57.017 47.619 0.76 0.00 40.21 1.85
252 253 5.088730 TCTAAGGCTACCAGGTGACTTTAA 58.911 41.667 13.51 2.84 40.21 1.52
253 254 4.680407 TCTAAGGCTACCAGGTGACTTTA 58.320 43.478 13.51 6.73 40.21 1.85
254 255 3.517612 TCTAAGGCTACCAGGTGACTTT 58.482 45.455 13.51 6.01 40.21 2.66
255 256 3.185880 TCTAAGGCTACCAGGTGACTT 57.814 47.619 13.01 13.01 40.21 3.01
256 257 2.921834 TCTAAGGCTACCAGGTGACT 57.078 50.000 0.76 0.00 46.44 3.41
257 258 3.975168 TTTCTAAGGCTACCAGGTGAC 57.025 47.619 0.76 0.00 0.00 3.67
258 259 3.908103 ACTTTTCTAAGGCTACCAGGTGA 59.092 43.478 0.76 0.00 35.61 4.02
259 260 4.287766 ACTTTTCTAAGGCTACCAGGTG 57.712 45.455 0.76 0.00 35.61 4.00
260 261 6.326843 CCTATACTTTTCTAAGGCTACCAGGT 59.673 42.308 0.00 0.00 35.61 4.00
261 262 6.326843 ACCTATACTTTTCTAAGGCTACCAGG 59.673 42.308 0.00 0.00 35.61 4.45
262 263 7.210873 CACCTATACTTTTCTAAGGCTACCAG 58.789 42.308 0.00 0.00 35.61 4.00
263 264 6.407752 GCACCTATACTTTTCTAAGGCTACCA 60.408 42.308 0.00 0.00 35.61 3.25
264 265 5.990386 GCACCTATACTTTTCTAAGGCTACC 59.010 44.000 0.00 0.00 35.61 3.18
265 266 6.818233 AGCACCTATACTTTTCTAAGGCTAC 58.182 40.000 0.00 0.00 35.61 3.58
266 267 7.125204 TGAAGCACCTATACTTTTCTAAGGCTA 59.875 37.037 0.00 0.00 35.61 3.93
267 268 5.959583 AGCACCTATACTTTTCTAAGGCT 57.040 39.130 0.00 0.00 35.61 4.58
268 269 6.113411 TGAAGCACCTATACTTTTCTAAGGC 58.887 40.000 0.00 0.00 35.61 4.35
269 270 7.606456 TGTTGAAGCACCTATACTTTTCTAAGG 59.394 37.037 0.00 0.00 35.61 2.69
270 271 8.547967 TGTTGAAGCACCTATACTTTTCTAAG 57.452 34.615 0.00 0.00 37.40 2.18
271 272 8.780249 GTTGTTGAAGCACCTATACTTTTCTAA 58.220 33.333 0.00 0.00 0.00 2.10
272 273 7.117236 CGTTGTTGAAGCACCTATACTTTTCTA 59.883 37.037 0.00 0.00 0.00 2.10
273 274 6.073222 CGTTGTTGAAGCACCTATACTTTTCT 60.073 38.462 0.00 0.00 0.00 2.52
274 275 6.073440 TCGTTGTTGAAGCACCTATACTTTTC 60.073 38.462 0.00 0.00 0.00 2.29
275 276 5.761234 TCGTTGTTGAAGCACCTATACTTTT 59.239 36.000 0.00 0.00 0.00 2.27
276 277 5.302360 TCGTTGTTGAAGCACCTATACTTT 58.698 37.500 0.00 0.00 0.00 2.66
277 278 4.890088 TCGTTGTTGAAGCACCTATACTT 58.110 39.130 0.00 0.00 0.00 2.24
278 279 4.530710 TCGTTGTTGAAGCACCTATACT 57.469 40.909 0.00 0.00 0.00 2.12
279 280 4.494199 GCATCGTTGTTGAAGCACCTATAC 60.494 45.833 0.00 0.00 33.04 1.47
280 281 3.621268 GCATCGTTGTTGAAGCACCTATA 59.379 43.478 0.00 0.00 33.04 1.31
281 282 2.420022 GCATCGTTGTTGAAGCACCTAT 59.580 45.455 0.00 0.00 33.04 2.57
282 283 1.804151 GCATCGTTGTTGAAGCACCTA 59.196 47.619 0.00 0.00 33.04 3.08
283 284 0.593128 GCATCGTTGTTGAAGCACCT 59.407 50.000 0.00 0.00 33.04 4.00
284 285 0.593128 AGCATCGTTGTTGAAGCACC 59.407 50.000 0.00 0.00 35.14 5.01
285 286 2.405892 AAGCATCGTTGTTGAAGCAC 57.594 45.000 0.00 0.00 35.14 4.40
286 287 2.357323 TGAAAGCATCGTTGTTGAAGCA 59.643 40.909 0.00 0.00 35.14 3.91
287 288 2.975851 CTGAAAGCATCGTTGTTGAAGC 59.024 45.455 0.00 0.00 32.97 3.86
288 289 4.472691 TCTGAAAGCATCGTTGTTGAAG 57.527 40.909 0.00 0.00 0.00 3.02
289 290 4.891627 TTCTGAAAGCATCGTTGTTGAA 57.108 36.364 0.00 0.00 0.00 2.69
290 291 4.261155 CCTTTCTGAAAGCATCGTTGTTGA 60.261 41.667 21.79 0.00 37.18 3.18
291 292 3.976942 CCTTTCTGAAAGCATCGTTGTTG 59.023 43.478 21.79 3.56 37.18 3.33
292 293 3.004734 CCCTTTCTGAAAGCATCGTTGTT 59.995 43.478 21.79 0.00 37.18 2.83
293 294 2.554032 CCCTTTCTGAAAGCATCGTTGT 59.446 45.455 21.79 0.00 37.18 3.32
294 295 2.813754 TCCCTTTCTGAAAGCATCGTTG 59.186 45.455 21.79 8.52 37.18 4.10
295 296 3.140325 TCCCTTTCTGAAAGCATCGTT 57.860 42.857 21.79 0.00 37.18 3.85
296 297 2.814336 GTTCCCTTTCTGAAAGCATCGT 59.186 45.455 21.79 0.00 37.18 3.73
297 298 2.159653 CGTTCCCTTTCTGAAAGCATCG 60.160 50.000 21.79 17.70 37.18 3.84
298 299 3.074412 TCGTTCCCTTTCTGAAAGCATC 58.926 45.455 21.79 11.72 37.18 3.91
299 300 2.814336 GTCGTTCCCTTTCTGAAAGCAT 59.186 45.455 21.79 0.00 37.18 3.79
300 301 2.218603 GTCGTTCCCTTTCTGAAAGCA 58.781 47.619 21.79 9.65 37.18 3.91
301 302 2.031944 GTGTCGTTCCCTTTCTGAAAGC 60.032 50.000 21.79 9.39 37.18 3.51
302 303 3.202906 TGTGTCGTTCCCTTTCTGAAAG 58.797 45.455 20.58 20.58 38.24 2.62
303 304 3.269538 TGTGTCGTTCCCTTTCTGAAA 57.730 42.857 2.44 2.44 0.00 2.69
304 305 2.992124 TGTGTCGTTCCCTTTCTGAA 57.008 45.000 0.00 0.00 0.00 3.02
305 306 2.367241 TCATGTGTCGTTCCCTTTCTGA 59.633 45.455 0.00 0.00 0.00 3.27
306 307 2.738846 CTCATGTGTCGTTCCCTTTCTG 59.261 50.000 0.00 0.00 0.00 3.02
307 308 2.872038 GCTCATGTGTCGTTCCCTTTCT 60.872 50.000 0.00 0.00 0.00 2.52
308 309 1.464997 GCTCATGTGTCGTTCCCTTTC 59.535 52.381 0.00 0.00 0.00 2.62
309 310 1.523758 GCTCATGTGTCGTTCCCTTT 58.476 50.000 0.00 0.00 0.00 3.11
310 311 0.670546 CGCTCATGTGTCGTTCCCTT 60.671 55.000 0.00 0.00 0.00 3.95
311 312 1.079819 CGCTCATGTGTCGTTCCCT 60.080 57.895 0.00 0.00 0.00 4.20
312 313 1.352156 GACGCTCATGTGTCGTTCCC 61.352 60.000 14.93 3.74 42.71 3.97
313 314 2.070861 GACGCTCATGTGTCGTTCC 58.929 57.895 14.93 4.26 42.71 3.62
318 319 0.917259 GATGACGACGCTCATGTGTC 59.083 55.000 14.73 0.00 46.82 3.67
319 320 0.798389 CGATGACGACGCTCATGTGT 60.798 55.000 14.73 0.00 42.66 3.72
320 321 1.912983 CGATGACGACGCTCATGTG 59.087 57.895 14.73 0.00 42.66 3.21
321 322 4.384485 CGATGACGACGCTCATGT 57.616 55.556 14.73 0.00 42.66 3.21
328 329 1.939785 GGCTACAGCGATGACGACG 60.940 63.158 8.12 0.00 43.26 5.12
329 330 0.457853 TTGGCTACAGCGATGACGAC 60.458 55.000 8.12 0.00 43.26 4.34
330 331 0.457853 GTTGGCTACAGCGATGACGA 60.458 55.000 8.12 0.00 43.26 4.20
331 332 1.421410 GGTTGGCTACAGCGATGACG 61.421 60.000 8.12 0.00 43.26 4.35
332 333 0.391130 TGGTTGGCTACAGCGATGAC 60.391 55.000 8.12 0.00 43.26 3.06
333 334 0.391130 GTGGTTGGCTACAGCGATGA 60.391 55.000 8.12 0.00 43.26 2.92
334 335 0.391661 AGTGGTTGGCTACAGCGATG 60.392 55.000 0.00 0.00 43.26 3.84
335 336 0.391661 CAGTGGTTGGCTACAGCGAT 60.392 55.000 0.80 0.00 43.26 4.58
336 337 1.005037 CAGTGGTTGGCTACAGCGA 60.005 57.895 0.80 0.00 43.26 4.93
337 338 1.005037 TCAGTGGTTGGCTACAGCG 60.005 57.895 0.80 0.00 43.26 5.18
338 339 1.301677 GCTCAGTGGTTGGCTACAGC 61.302 60.000 0.80 0.00 41.14 4.40
339 340 0.035317 TGCTCAGTGGTTGGCTACAG 59.965 55.000 0.80 0.00 0.00 2.74
340 341 0.692476 ATGCTCAGTGGTTGGCTACA 59.308 50.000 0.80 0.00 0.00 2.74
341 342 1.089920 CATGCTCAGTGGTTGGCTAC 58.910 55.000 0.00 0.00 0.00 3.58
342 343 0.983467 TCATGCTCAGTGGTTGGCTA 59.017 50.000 0.00 0.00 0.00 3.93
343 344 0.330604 ATCATGCTCAGTGGTTGGCT 59.669 50.000 0.00 0.00 0.00 4.75
344 345 0.737219 GATCATGCTCAGTGGTTGGC 59.263 55.000 0.00 0.00 0.00 4.52
345 346 2.118313 TGATCATGCTCAGTGGTTGG 57.882 50.000 0.00 0.00 0.00 3.77
346 347 3.275999 TCATGATCATGCTCAGTGGTTG 58.724 45.455 27.68 4.61 38.65 3.77
347 348 3.639672 TCATGATCATGCTCAGTGGTT 57.360 42.857 27.68 0.00 38.65 3.67
348 349 3.639672 TTCATGATCATGCTCAGTGGT 57.360 42.857 27.68 0.00 38.65 4.16
349 350 5.515797 AAATTCATGATCATGCTCAGTGG 57.484 39.130 27.68 5.04 38.65 4.00
350 351 6.472486 GTGAAAATTCATGATCATGCTCAGTG 59.528 38.462 27.68 7.32 39.73 3.66
351 352 6.377429 AGTGAAAATTCATGATCATGCTCAGT 59.623 34.615 27.68 21.21 39.73 3.41
352 353 6.796426 AGTGAAAATTCATGATCATGCTCAG 58.204 36.000 27.68 7.19 39.73 3.35
353 354 6.769134 AGTGAAAATTCATGATCATGCTCA 57.231 33.333 27.68 19.98 39.73 4.26
354 355 7.255569 TCAAGTGAAAATTCATGATCATGCTC 58.744 34.615 27.68 18.11 39.73 4.26
355 356 7.165460 TCAAGTGAAAATTCATGATCATGCT 57.835 32.000 27.68 15.96 39.73 3.79
356 357 7.758076 TCTTCAAGTGAAAATTCATGATCATGC 59.242 33.333 27.68 14.68 39.73 4.06
357 358 9.290483 CTCTTCAAGTGAAAATTCATGATCATG 57.710 33.333 26.79 26.79 39.73 3.07
358 359 8.467598 CCTCTTCAAGTGAAAATTCATGATCAT 58.532 33.333 1.18 1.18 39.73 2.45
359 360 7.666804 TCCTCTTCAAGTGAAAATTCATGATCA 59.333 33.333 0.00 0.00 39.73 2.92
360 361 8.048534 TCCTCTTCAAGTGAAAATTCATGATC 57.951 34.615 0.00 0.00 39.73 2.92
361 362 7.668886 ACTCCTCTTCAAGTGAAAATTCATGAT 59.331 33.333 0.00 0.00 39.73 2.45
362 363 7.000472 ACTCCTCTTCAAGTGAAAATTCATGA 59.000 34.615 0.00 0.00 39.73 3.07
363 364 7.211966 ACTCCTCTTCAAGTGAAAATTCATG 57.788 36.000 0.00 0.00 39.73 3.07
364 365 7.830099 AACTCCTCTTCAAGTGAAAATTCAT 57.170 32.000 0.00 0.00 39.73 2.57
365 366 7.339212 TCAAACTCCTCTTCAAGTGAAAATTCA 59.661 33.333 0.00 0.00 33.07 2.57
366 367 7.707104 TCAAACTCCTCTTCAAGTGAAAATTC 58.293 34.615 0.00 0.00 33.07 2.17
367 368 7.340487 ACTCAAACTCCTCTTCAAGTGAAAATT 59.660 33.333 0.00 0.00 33.07 1.82
368 369 6.830838 ACTCAAACTCCTCTTCAAGTGAAAAT 59.169 34.615 0.00 0.00 33.07 1.82
369 370 6.180472 ACTCAAACTCCTCTTCAAGTGAAAA 58.820 36.000 0.00 0.00 33.07 2.29
370 371 5.745227 ACTCAAACTCCTCTTCAAGTGAAA 58.255 37.500 0.00 0.00 33.07 2.69
371 372 5.359194 ACTCAAACTCCTCTTCAAGTGAA 57.641 39.130 0.00 0.00 0.00 3.18
372 373 6.479972 TTACTCAAACTCCTCTTCAAGTGA 57.520 37.500 0.00 0.00 0.00 3.41
373 374 6.949449 GTTTACTCAAACTCCTCTTCAAGTG 58.051 40.000 0.00 0.00 40.78 3.16
386 387 5.772521 ACATTGCATGGAGTTTACTCAAAC 58.227 37.500 11.67 0.00 44.60 2.93
387 388 5.769662 AGACATTGCATGGAGTTTACTCAAA 59.230 36.000 11.67 0.31 44.60 2.69
388 389 5.316167 AGACATTGCATGGAGTTTACTCAA 58.684 37.500 11.67 0.70 44.60 3.02
389 390 4.910195 AGACATTGCATGGAGTTTACTCA 58.090 39.130 11.67 0.00 44.60 3.41
390 391 5.446473 CGAAGACATTGCATGGAGTTTACTC 60.446 44.000 1.18 1.18 42.14 2.59
391 392 4.393062 CGAAGACATTGCATGGAGTTTACT 59.607 41.667 0.00 0.00 33.60 2.24
392 393 4.391830 TCGAAGACATTGCATGGAGTTTAC 59.608 41.667 0.00 0.00 33.60 2.01
393 394 4.574892 TCGAAGACATTGCATGGAGTTTA 58.425 39.130 0.00 0.00 33.60 2.01
394 395 3.411446 TCGAAGACATTGCATGGAGTTT 58.589 40.909 0.00 0.00 33.60 2.66
395 396 3.057969 TCGAAGACATTGCATGGAGTT 57.942 42.857 0.00 0.00 33.60 3.01
396 397 2.768253 TCGAAGACATTGCATGGAGT 57.232 45.000 0.00 0.00 33.60 3.85
414 415 4.748102 TGGTTCACACGACATTCTTTAGTC 59.252 41.667 0.00 0.00 0.00 2.59
415 416 4.699637 TGGTTCACACGACATTCTTTAGT 58.300 39.130 0.00 0.00 0.00 2.24
416 417 5.862924 ATGGTTCACACGACATTCTTTAG 57.137 39.130 0.00 0.00 0.00 1.85
417 418 6.932400 ACTTATGGTTCACACGACATTCTTTA 59.068 34.615 0.00 0.00 0.00 1.85
418 419 5.763204 ACTTATGGTTCACACGACATTCTTT 59.237 36.000 0.00 0.00 0.00 2.52
419 420 5.305585 ACTTATGGTTCACACGACATTCTT 58.694 37.500 0.00 0.00 0.00 2.52
420 421 4.894784 ACTTATGGTTCACACGACATTCT 58.105 39.130 0.00 0.00 0.00 2.40
421 422 5.607119 AACTTATGGTTCACACGACATTC 57.393 39.130 0.00 0.00 31.69 2.67
422 423 6.038825 TGAAAACTTATGGTTCACACGACATT 59.961 34.615 0.00 0.00 37.12 2.71
423 424 5.529430 TGAAAACTTATGGTTCACACGACAT 59.471 36.000 0.00 0.00 37.12 3.06
424 425 4.876679 TGAAAACTTATGGTTCACACGACA 59.123 37.500 0.00 0.00 37.12 4.35
425 426 5.202640 GTGAAAACTTATGGTTCACACGAC 58.797 41.667 16.24 0.00 46.69 4.34
426 427 5.412526 GTGAAAACTTATGGTTCACACGA 57.587 39.130 16.24 0.00 46.69 4.35
430 431 4.825085 TCAGGGTGAAAACTTATGGTTCAC 59.175 41.667 14.24 14.24 46.73 3.18
431 432 5.055265 TCAGGGTGAAAACTTATGGTTCA 57.945 39.130 0.00 0.00 37.12 3.18
432 433 5.181433 GTCTCAGGGTGAAAACTTATGGTTC 59.819 44.000 0.00 0.00 37.12 3.62
433 434 5.070685 GTCTCAGGGTGAAAACTTATGGTT 58.929 41.667 0.00 0.00 40.28 3.67
434 435 4.351111 AGTCTCAGGGTGAAAACTTATGGT 59.649 41.667 0.00 0.00 0.00 3.55
435 436 4.911390 AGTCTCAGGGTGAAAACTTATGG 58.089 43.478 0.00 0.00 0.00 2.74
463 464 0.727122 GACGCATGTTGAGTGCAAGC 60.727 55.000 0.00 0.00 42.62 4.01
476 477 0.606604 AAGTCGGTTAGGTGACGCAT 59.393 50.000 0.00 0.00 40.05 4.73
478 479 0.243095 AGAAGTCGGTTAGGTGACGC 59.757 55.000 0.00 0.00 40.05 5.19
479 480 2.288030 ACAAGAAGTCGGTTAGGTGACG 60.288 50.000 0.00 0.00 40.05 4.35
491 492 4.093556 GGTATGCTAGCAACACAAGAAGTC 59.906 45.833 23.54 4.63 0.00 3.01
535 539 1.823169 AACCCGGCTCGCTAAAGTGA 61.823 55.000 0.00 0.00 0.00 3.41
537 541 0.828677 ATAACCCGGCTCGCTAAAGT 59.171 50.000 0.00 0.00 0.00 2.66
538 542 1.202486 TCATAACCCGGCTCGCTAAAG 60.202 52.381 0.00 0.00 0.00 1.85
543 549 1.002792 GAAAATCATAACCCGGCTCGC 60.003 52.381 0.00 0.00 0.00 5.03
544 550 2.285083 TGAAAATCATAACCCGGCTCG 58.715 47.619 0.00 0.00 0.00 5.03
549 555 4.911610 GCATCGATTGAAAATCATAACCCG 59.088 41.667 0.00 0.00 0.00 5.28
565 571 2.884012 TCATTTTTATGCCCGCATCGAT 59.116 40.909 5.24 0.00 37.82 3.59
603 642 1.562575 GGCGCGTTCGGGTTATATGG 61.563 60.000 8.43 0.00 35.95 2.74
651 691 8.564574 GGCATGGAACGAAAATTGAACTATATA 58.435 33.333 0.00 0.00 0.00 0.86
661 701 1.883275 TGTCGGCATGGAACGAAAATT 59.117 42.857 0.00 0.00 41.17 1.82
667 707 2.047274 AGGTGTCGGCATGGAACG 60.047 61.111 0.00 0.00 0.00 3.95
681 721 0.318762 GGAAACTGACAGCTCGAGGT 59.681 55.000 12.24 12.24 0.00 3.85
683 723 0.241213 TCGGAAACTGACAGCTCGAG 59.759 55.000 8.45 8.45 0.00 4.04
732 772 3.668447 AGGTGATGAGATGACACACAAC 58.332 45.455 0.00 0.00 36.42 3.32
740 780 3.986435 TCTGGAAGAGGTGATGAGATGA 58.014 45.455 0.00 0.00 38.67 2.92
758 804 1.143305 CCACGTCTCTGCTTGTTCTG 58.857 55.000 0.00 0.00 0.00 3.02
885 954 3.638160 ACAGTTTATAGCCGACGGGATAA 59.362 43.478 17.22 0.00 37.81 1.75
1147 1305 2.781158 GCTCCTCTCTCGTGGGCTC 61.781 68.421 0.00 0.00 0.00 4.70
1232 1396 2.754552 TGCAAGTGTTGAAGCAAGAAGT 59.245 40.909 0.00 0.00 33.48 3.01
1233 1397 3.425577 TGCAAGTGTTGAAGCAAGAAG 57.574 42.857 0.00 0.00 33.48 2.85
1254 1430 6.827586 ATCTAAACGGGAAAAATGCAACTA 57.172 33.333 0.00 0.00 0.00 2.24
1292 1472 5.082059 CGAACGAGAAAATTCAGTGATTGG 58.918 41.667 0.00 0.00 0.00 3.16
1628 1913 4.789802 GCACCTCAAACTTTGACAAGTAGC 60.790 45.833 0.00 3.12 42.89 3.58
1630 1915 3.630312 GGCACCTCAAACTTTGACAAGTA 59.370 43.478 0.00 0.00 42.89 2.24
1631 1916 2.427095 GGCACCTCAAACTTTGACAAGT 59.573 45.455 0.00 0.00 45.89 3.16
1632 1917 2.541588 CGGCACCTCAAACTTTGACAAG 60.542 50.000 0.00 0.00 35.46 3.16
1633 1918 1.403679 CGGCACCTCAAACTTTGACAA 59.596 47.619 0.00 0.00 35.46 3.18
1634 1919 1.021202 CGGCACCTCAAACTTTGACA 58.979 50.000 0.00 0.00 35.46 3.58
1635 1920 0.310854 CCGGCACCTCAAACTTTGAC 59.689 55.000 0.00 0.00 35.46 3.18
1636 1921 0.106918 ACCGGCACCTCAAACTTTGA 60.107 50.000 0.00 4.16 38.17 2.69
1637 1922 0.310854 GACCGGCACCTCAAACTTTG 59.689 55.000 0.00 0.00 0.00 2.77
1638 1923 0.182775 AGACCGGCACCTCAAACTTT 59.817 50.000 0.00 0.00 0.00 2.66
1639 1924 0.535102 CAGACCGGCACCTCAAACTT 60.535 55.000 0.00 0.00 0.00 2.66
1640 1925 1.071471 CAGACCGGCACCTCAAACT 59.929 57.895 0.00 0.00 0.00 2.66
1641 1926 1.966451 CCAGACCGGCACCTCAAAC 60.966 63.158 0.00 0.00 0.00 2.93
1642 1927 2.429930 CCAGACCGGCACCTCAAA 59.570 61.111 0.00 0.00 0.00 2.69
1759 2076 0.165944 CAGATCACAAAACGTCCGGC 59.834 55.000 0.00 0.00 0.00 6.13
1786 2104 7.547370 TGTCCAACCAAAAGAAAATTTACACAG 59.453 33.333 0.00 0.00 0.00 3.66
1982 4353 2.978018 GCGCACAAACCTAGCCCAC 61.978 63.158 0.30 0.00 0.00 4.61
2012 4383 1.006639 AGGTGTTTGTCCCAAACCTGT 59.993 47.619 15.11 0.00 39.78 4.00
2022 4393 3.826729 AGGCCAAGAAATAGGTGTTTGTC 59.173 43.478 5.01 0.00 0.00 3.18
2034 4407 8.472007 TTCTTGTAAAAGATTAGGCCAAGAAA 57.528 30.769 5.01 0.00 37.97 2.52
2070 4485 8.753497 AAAGAGAAGGTAAGAAGAAACATGTT 57.247 30.769 4.92 4.92 0.00 2.71
2105 4521 9.588096 AGTGGTCTGATTAATTTCTTTTTACCT 57.412 29.630 0.00 0.00 0.00 3.08
2220 4640 9.727627 CTATCAACCAATATTTCTTTCTTGAGC 57.272 33.333 0.00 0.00 0.00 4.26
2236 4656 2.300956 TGGGCAAAGCTATCAACCAA 57.699 45.000 0.00 0.00 0.00 3.67
2252 4672 7.964559 CACATGCTATAATCGTTATCAAATGGG 59.035 37.037 0.00 0.00 0.00 4.00
2284 4704 2.157834 ACGTCACGTTAGCATTTCCA 57.842 45.000 0.00 0.00 36.35 3.53
2286 4706 5.614760 ACAATTACGTCACGTTAGCATTTC 58.385 37.500 8.85 0.00 41.54 2.17
2290 4710 4.049869 TGAACAATTACGTCACGTTAGCA 58.950 39.130 8.85 0.00 41.54 3.49
2301 4721 5.651172 TGAGTCTTGTGTGAACAATTACG 57.349 39.130 0.00 0.00 0.00 3.18
2319 4739 1.342076 TGGCCGTCTCCTCTAATGAGT 60.342 52.381 0.00 0.00 38.61 3.41
2344 4765 1.067213 ACCATTACCGGCATGCAAAAC 60.067 47.619 21.36 0.10 0.00 2.43
2345 4766 1.203523 GACCATTACCGGCATGCAAAA 59.796 47.619 21.36 7.83 0.00 2.44
2349 4770 0.814457 TTTGACCATTACCGGCATGC 59.186 50.000 9.90 9.90 0.00 4.06
2350 4771 1.134175 GGTTTGACCATTACCGGCATG 59.866 52.381 0.00 3.96 38.42 4.06
2351 4772 1.470051 GGTTTGACCATTACCGGCAT 58.530 50.000 0.00 0.00 38.42 4.40
2360 4781 0.698818 GTGAGGAGGGGTTTGACCAT 59.301 55.000 0.00 0.00 41.02 3.55
2369 4790 1.287739 AGAAGAGAGAGTGAGGAGGGG 59.712 57.143 0.00 0.00 0.00 4.79
2376 4797 1.364721 CGAGCGAGAAGAGAGAGTGA 58.635 55.000 0.00 0.00 0.00 3.41
2383 4804 0.248054 GAGAGTGCGAGCGAGAAGAG 60.248 60.000 0.00 0.00 0.00 2.85
2507 4928 3.132289 GGAGACGTACTTGATGGAATCCA 59.868 47.826 3.67 3.67 44.73 3.41
2518 4939 2.040012 TGTCAGAGGAGGAGACGTACTT 59.960 50.000 0.00 0.00 35.09 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.