Multiple sequence alignment - TraesCS6D01G333300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G333300 chr6D 100.000 2588 0 0 1 2588 435833295 435830708 0.000000e+00 4780.0
1 TraesCS6D01G333300 chr6D 76.136 968 143 55 680 1602 435711441 435712365 6.620000e-116 427.0
2 TraesCS6D01G333300 chr6D 80.328 488 61 16 1138 1603 435749979 435750453 1.150000e-88 337.0
3 TraesCS6D01G333300 chr6D 81.627 332 34 17 1078 1405 435351218 435351526 1.540000e-62 250.0
4 TraesCS6D01G333300 chr6D 80.328 366 32 24 722 1081 435763551 435763882 9.250000e-60 241.0
5 TraesCS6D01G333300 chr6D 79.016 386 47 21 1072 1434 435763909 435764283 1.550000e-57 233.0
6 TraesCS6D01G333300 chr6D 81.435 237 20 9 1517 1730 435764317 435764552 3.420000e-39 172.0
7 TraesCS6D01G333300 chr6D 81.395 215 15 8 873 1087 435963344 435963155 4.460000e-33 152.0
8 TraesCS6D01G333300 chr6D 77.895 285 26 24 718 991 435749621 435749879 2.680000e-30 143.0
9 TraesCS6D01G333300 chr6D 84.677 124 12 7 869 991 435810264 435810147 1.630000e-22 117.0
10 TraesCS6D01G333300 chr6D 79.195 149 23 5 685 829 435963504 435963360 2.120000e-16 97.1
11 TraesCS6D01G333300 chr6D 95.652 46 1 1 1600 1644 435962580 435962535 3.570000e-09 73.1
12 TraesCS6D01G333300 chr6A 95.227 1236 43 15 1079 2310 582638711 582637488 0.000000e+00 1941.0
13 TraesCS6D01G333300 chr6A 97.386 459 6 2 635 1087 582639191 582638733 0.000000e+00 776.0
14 TraesCS6D01G333300 chr6A 76.412 1009 127 66 776 1730 582511161 582512112 2.360000e-120 442.0
15 TraesCS6D01G333300 chr6A 81.336 584 61 25 875 1434 582516401 582516960 5.120000e-117 431.0
16 TraesCS6D01G333300 chr6A 88.270 341 14 4 2248 2588 582637491 582637177 4.040000e-103 385.0
17 TraesCS6D01G333300 chr6A 76.964 751 113 39 868 1602 582631443 582630737 8.740000e-100 374.0
18 TraesCS6D01G333300 chr6A 74.525 789 120 53 680 1434 582264483 582265224 4.240000e-68 268.0
19 TraesCS6D01G333300 chr6A 86.592 179 18 6 2405 2581 595634687 595634513 2.630000e-45 193.0
20 TraesCS6D01G333300 chr6A 90.076 131 12 1 1600 1730 582517127 582517256 4.430000e-38 169.0
21 TraesCS6D01G333300 chr6A 86.301 146 20 0 1443 1588 581983435 581983580 2.670000e-35 159.0
22 TraesCS6D01G333300 chr6A 88.710 124 14 0 1480 1603 582516972 582517095 4.460000e-33 152.0
23 TraesCS6D01G333300 chr6A 81.967 122 9 6 1611 1730 582920507 582920397 9.860000e-15 91.6
24 TraesCS6D01G333300 chr2B 92.784 388 25 2 206 593 175454216 175454600 2.250000e-155 558.0
25 TraesCS6D01G333300 chr2B 92.545 389 24 4 206 593 209818237 209817853 1.050000e-153 553.0
26 TraesCS6D01G333300 chr2B 92.545 389 24 4 206 593 452910564 452910180 1.050000e-153 553.0
27 TraesCS6D01G333300 chr2B 92.268 388 25 4 206 593 561571034 561570652 1.750000e-151 545.0
28 TraesCS6D01G333300 chr2B 84.564 149 21 2 2422 2569 420182408 420182261 2.080000e-31 147.0
29 TraesCS6D01G333300 chr6B 92.545 389 25 3 206 593 41027867 41027482 2.910000e-154 555.0
30 TraesCS6D01G333300 chr6B 80.979 531 75 14 1078 1603 658578315 658577806 5.190000e-107 398.0
31 TraesCS6D01G333300 chr6B 78.054 442 69 18 1078 1510 658403170 658403592 1.190000e-63 254.0
32 TraesCS6D01G333300 chr6B 79.787 376 54 16 1072 1434 658530732 658531098 1.190000e-63 254.0
33 TraesCS6D01G333300 chr6B 78.329 383 35 29 718 1087 658530358 658530705 1.210000e-48 204.0
34 TraesCS6D01G333300 chr6B 90.678 118 10 1 964 1081 658578464 658578348 3.450000e-34 156.0
35 TraesCS6D01G333300 chr6B 83.673 98 13 1 1475 1572 658234443 658234537 3.550000e-14 89.8
36 TraesCS6D01G333300 chr6B 89.231 65 6 1 873 937 658578533 658578470 2.130000e-11 80.5
37 TraesCS6D01G333300 chr7D 92.031 389 27 3 206 593 478799211 478798826 6.300000e-151 544.0
38 TraesCS6D01G333300 chr7D 81.373 102 14 4 1524 1620 634439917 634439816 7.680000e-11 78.7
39 TraesCS6D01G333300 chr4D 92.031 389 27 3 206 593 17069654 17069269 6.300000e-151 544.0
40 TraesCS6D01G333300 chr4D 82.468 154 23 3 2415 2567 46195931 46196081 5.810000e-27 132.0
41 TraesCS6D01G333300 chr3B 92.031 389 27 3 206 593 824304666 824305051 6.300000e-151 544.0
42 TraesCS6D01G333300 chr3B 84.615 169 25 1 2420 2588 22602804 22602971 1.590000e-37 167.0
43 TraesCS6D01G333300 chr7B 92.010 388 28 2 206 593 657535945 657535561 2.270000e-150 542.0
44 TraesCS6D01G333300 chr7B 80.488 123 16 7 1506 1621 741668805 741668926 1.280000e-13 87.9
45 TraesCS6D01G333300 chr2D 81.325 166 26 5 2401 2564 626655272 626655434 2.090000e-26 130.0
46 TraesCS6D01G333300 chr1D 82.993 147 21 4 2405 2549 376773678 376773534 2.090000e-26 130.0
47 TraesCS6D01G333300 chr5B 81.879 149 25 2 2405 2552 590242292 590242145 9.720000e-25 124.0
48 TraesCS6D01G333300 chr5B 86.585 82 9 2 1498 1578 550321110 550321190 3.550000e-14 89.8
49 TraesCS6D01G333300 chr5D 80.120 166 31 2 2403 2567 2792430 2792266 3.500000e-24 122.0
50 TraesCS6D01G333300 chr5D 86.667 90 12 0 1289 1378 489167068 489166979 1.640000e-17 100.0
51 TraesCS6D01G333300 chr5D 92.647 68 5 0 1289 1356 489013466 489013399 5.890000e-17 99.0
52 TraesCS6D01G333300 chr5D 84.783 92 9 3 1499 1586 450374158 450374248 1.280000e-13 87.9
53 TraesCS6D01G333300 chr5D 85.882 85 8 2 1507 1588 450380127 450380210 1.280000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G333300 chr6D 435830708 435833295 2587 True 4780.000000 4780 100.000000 1 2588 1 chr6D.!!$R2 2587
1 TraesCS6D01G333300 chr6D 435711441 435712365 924 False 427.000000 427 76.136000 680 1602 1 chr6D.!!$F2 922
2 TraesCS6D01G333300 chr6D 435749621 435750453 832 False 240.000000 337 79.111500 718 1603 2 chr6D.!!$F3 885
3 TraesCS6D01G333300 chr6D 435763551 435764552 1001 False 215.333333 241 80.259667 722 1730 3 chr6D.!!$F4 1008
4 TraesCS6D01G333300 chr6A 582637177 582639191 2014 True 1034.000000 1941 93.627667 635 2588 3 chr6A.!!$R4 1953
5 TraesCS6D01G333300 chr6A 582511161 582512112 951 False 442.000000 442 76.412000 776 1730 1 chr6A.!!$F3 954
6 TraesCS6D01G333300 chr6A 582630737 582631443 706 True 374.000000 374 76.964000 868 1602 1 chr6A.!!$R1 734
7 TraesCS6D01G333300 chr6A 582264483 582265224 741 False 268.000000 268 74.525000 680 1434 1 chr6A.!!$F2 754
8 TraesCS6D01G333300 chr6A 582516401 582517256 855 False 250.666667 431 86.707333 875 1730 3 chr6A.!!$F4 855
9 TraesCS6D01G333300 chr6B 658530358 658531098 740 False 229.000000 254 79.058000 718 1434 2 chr6B.!!$F3 716
10 TraesCS6D01G333300 chr6B 658577806 658578533 727 True 211.500000 398 86.962667 873 1603 3 chr6B.!!$R2 730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
114 115 0.030101 TTTCCGAAGCAAACAAGGCG 59.97 50.0 0.0 0.0 36.08 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1890 2165 0.035176 GGCTTGCCATGGAAAAGCAA 59.965 50.0 34.95 22.99 46.46 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 3.309582 GCCTAGCACTGGCCTACA 58.690 61.111 3.32 0.00 44.32 2.74
43 44 1.832912 GCCTAGCACTGGCCTACAT 59.167 57.895 3.32 0.00 44.32 2.29
44 45 0.533755 GCCTAGCACTGGCCTACATG 60.534 60.000 3.32 0.00 44.32 3.21
45 46 1.123077 CCTAGCACTGGCCTACATGA 58.877 55.000 3.32 0.00 42.56 3.07
46 47 1.486310 CCTAGCACTGGCCTACATGAA 59.514 52.381 3.32 0.00 42.56 2.57
47 48 2.092968 CCTAGCACTGGCCTACATGAAA 60.093 50.000 3.32 0.00 42.56 2.69
48 49 2.119801 AGCACTGGCCTACATGAAAG 57.880 50.000 3.32 0.00 42.56 2.62
49 50 1.098050 GCACTGGCCTACATGAAAGG 58.902 55.000 3.32 12.75 37.17 3.11
50 51 1.755179 CACTGGCCTACATGAAAGGG 58.245 55.000 17.03 7.15 34.46 3.95
56 57 3.214696 GCCTACATGAAAGGGCATAGT 57.785 47.619 17.03 0.00 43.59 2.12
57 58 3.555966 GCCTACATGAAAGGGCATAGTT 58.444 45.455 17.03 0.00 43.59 2.24
58 59 4.714632 GCCTACATGAAAGGGCATAGTTA 58.285 43.478 17.03 0.00 43.59 2.24
59 60 4.515567 GCCTACATGAAAGGGCATAGTTAC 59.484 45.833 17.03 0.00 43.59 2.50
60 61 5.687706 GCCTACATGAAAGGGCATAGTTACT 60.688 44.000 17.03 0.00 43.59 2.24
61 62 6.357367 CCTACATGAAAGGGCATAGTTACTT 58.643 40.000 0.00 0.00 0.00 2.24
62 63 6.828785 CCTACATGAAAGGGCATAGTTACTTT 59.171 38.462 0.00 0.00 35.99 2.66
63 64 6.759497 ACATGAAAGGGCATAGTTACTTTC 57.241 37.500 0.00 8.59 45.46 2.62
67 68 6.819397 GAAAGGGCATAGTTACTTTCACTT 57.181 37.500 10.19 0.00 44.91 3.16
68 69 7.916914 GAAAGGGCATAGTTACTTTCACTTA 57.083 36.000 10.19 0.00 44.91 2.24
69 70 8.331730 GAAAGGGCATAGTTACTTTCACTTAA 57.668 34.615 10.19 0.00 44.91 1.85
70 71 7.683437 AAGGGCATAGTTACTTTCACTTAAC 57.317 36.000 0.00 0.00 0.00 2.01
71 72 6.775708 AGGGCATAGTTACTTTCACTTAACA 58.224 36.000 0.00 0.00 31.66 2.41
72 73 7.402862 AGGGCATAGTTACTTTCACTTAACAT 58.597 34.615 0.00 0.00 31.66 2.71
73 74 7.336931 AGGGCATAGTTACTTTCACTTAACATG 59.663 37.037 0.00 0.00 31.66 3.21
74 75 7.120726 GGGCATAGTTACTTTCACTTAACATGT 59.879 37.037 0.00 0.00 31.66 3.21
75 76 8.175716 GGCATAGTTACTTTCACTTAACATGTC 58.824 37.037 0.00 0.00 31.66 3.06
76 77 8.175716 GCATAGTTACTTTCACTTAACATGTCC 58.824 37.037 0.00 0.00 31.66 4.02
77 78 9.214957 CATAGTTACTTTCACTTAACATGTCCA 57.785 33.333 0.00 0.00 31.66 4.02
78 79 7.492352 AGTTACTTTCACTTAACATGTCCAC 57.508 36.000 0.00 0.00 31.66 4.02
79 80 7.051623 AGTTACTTTCACTTAACATGTCCACA 58.948 34.615 0.00 0.00 31.66 4.17
80 81 5.751243 ACTTTCACTTAACATGTCCACAC 57.249 39.130 0.00 0.00 0.00 3.82
81 82 5.437060 ACTTTCACTTAACATGTCCACACT 58.563 37.500 0.00 0.00 0.00 3.55
82 83 5.296780 ACTTTCACTTAACATGTCCACACTG 59.703 40.000 0.00 0.00 0.00 3.66
83 84 3.138304 TCACTTAACATGTCCACACTGC 58.862 45.455 0.00 0.00 0.00 4.40
84 85 2.096268 CACTTAACATGTCCACACTGCG 60.096 50.000 0.00 0.00 0.00 5.18
85 86 2.224185 ACTTAACATGTCCACACTGCGA 60.224 45.455 0.00 0.00 0.00 5.10
86 87 2.535012 TAACATGTCCACACTGCGAA 57.465 45.000 0.00 0.00 0.00 4.70
87 88 1.674359 AACATGTCCACACTGCGAAA 58.326 45.000 0.00 0.00 0.00 3.46
88 89 1.674359 ACATGTCCACACTGCGAAAA 58.326 45.000 0.00 0.00 0.00 2.29
89 90 2.229792 ACATGTCCACACTGCGAAAAT 58.770 42.857 0.00 0.00 0.00 1.82
90 91 2.030893 ACATGTCCACACTGCGAAAATG 60.031 45.455 0.00 0.00 0.00 2.32
91 92 1.674359 TGTCCACACTGCGAAAATGT 58.326 45.000 0.00 0.00 0.00 2.71
92 93 1.601903 TGTCCACACTGCGAAAATGTC 59.398 47.619 0.00 0.00 0.00 3.06
93 94 1.601903 GTCCACACTGCGAAAATGTCA 59.398 47.619 0.00 0.00 0.00 3.58
94 95 2.226437 GTCCACACTGCGAAAATGTCAT 59.774 45.455 0.00 0.00 0.00 3.06
95 96 2.884012 TCCACACTGCGAAAATGTCATT 59.116 40.909 0.00 0.00 0.00 2.57
96 97 3.317711 TCCACACTGCGAAAATGTCATTT 59.682 39.130 4.91 4.91 0.00 2.32
97 98 4.050553 CCACACTGCGAAAATGTCATTTT 58.949 39.130 20.90 20.90 44.56 1.82
108 109 5.905480 AAATGTCATTTTCCGAAGCAAAC 57.095 34.783 4.91 0.00 0.00 2.93
109 110 4.582701 ATGTCATTTTCCGAAGCAAACA 57.417 36.364 0.00 0.00 0.00 2.83
110 111 4.377839 TGTCATTTTCCGAAGCAAACAA 57.622 36.364 0.00 0.00 0.00 2.83
111 112 4.358851 TGTCATTTTCCGAAGCAAACAAG 58.641 39.130 0.00 0.00 0.00 3.16
112 113 3.735746 GTCATTTTCCGAAGCAAACAAGG 59.264 43.478 0.00 0.00 0.00 3.61
113 114 2.217429 TTTTCCGAAGCAAACAAGGC 57.783 45.000 0.00 0.00 0.00 4.35
114 115 0.030101 TTTCCGAAGCAAACAAGGCG 59.970 50.000 0.00 0.00 36.08 5.52
115 116 0.816018 TTCCGAAGCAAACAAGGCGA 60.816 50.000 0.00 0.00 36.08 5.54
116 117 0.605319 TCCGAAGCAAACAAGGCGAT 60.605 50.000 0.00 0.00 36.08 4.58
117 118 0.240945 CCGAAGCAAACAAGGCGATT 59.759 50.000 0.00 0.00 36.08 3.34
118 119 1.335872 CCGAAGCAAACAAGGCGATTT 60.336 47.619 0.00 0.00 36.08 2.17
119 120 2.393764 CGAAGCAAACAAGGCGATTTT 58.606 42.857 0.00 0.00 36.08 1.82
120 121 2.794350 CGAAGCAAACAAGGCGATTTTT 59.206 40.909 0.00 0.00 36.08 1.94
121 122 3.978217 CGAAGCAAACAAGGCGATTTTTA 59.022 39.130 0.00 0.00 36.08 1.52
122 123 4.143618 CGAAGCAAACAAGGCGATTTTTAC 60.144 41.667 0.00 0.00 36.08 2.01
123 124 4.314740 AGCAAACAAGGCGATTTTTACA 57.685 36.364 0.00 0.00 36.08 2.41
124 125 4.688021 AGCAAACAAGGCGATTTTTACAA 58.312 34.783 0.00 0.00 36.08 2.41
125 126 5.296748 AGCAAACAAGGCGATTTTTACAAT 58.703 33.333 0.00 0.00 36.08 2.71
126 127 5.405269 AGCAAACAAGGCGATTTTTACAATC 59.595 36.000 0.00 0.00 36.08 2.67
141 142 9.679596 ATTTTTACAATCGAAGAAACGTATACG 57.320 29.630 23.24 23.24 43.58 3.06
143 144 5.921784 ACAATCGAAGAAACGTATACGTC 57.078 39.130 29.53 18.57 46.73 4.34
144 145 4.493350 ACAATCGAAGAAACGTATACGTCG 59.507 41.667 29.53 25.72 46.73 5.12
145 146 4.520743 ATCGAAGAAACGTATACGTCGA 57.479 40.909 29.15 29.15 46.73 4.20
146 147 4.512657 ATCGAAGAAACGTATACGTCGAG 58.487 43.478 29.86 19.77 46.73 4.04
147 148 5.069588 ATCGAAGAAACGTATACGTCGAGC 61.070 45.833 29.86 20.61 46.73 5.03
157 158 4.471814 CGTCGAGCGTGTTTTGTG 57.528 55.556 0.00 0.00 35.54 3.33
158 159 1.634225 CGTCGAGCGTGTTTTGTGT 59.366 52.632 0.00 0.00 35.54 3.72
159 160 0.847670 CGTCGAGCGTGTTTTGTGTA 59.152 50.000 0.00 0.00 35.54 2.90
160 161 1.395080 CGTCGAGCGTGTTTTGTGTAC 60.395 52.381 0.00 0.00 35.54 2.90
161 162 1.856597 GTCGAGCGTGTTTTGTGTACT 59.143 47.619 0.00 0.00 0.00 2.73
162 163 3.044986 GTCGAGCGTGTTTTGTGTACTA 58.955 45.455 0.00 0.00 0.00 1.82
163 164 3.671928 GTCGAGCGTGTTTTGTGTACTAT 59.328 43.478 0.00 0.00 0.00 2.12
164 165 4.149396 GTCGAGCGTGTTTTGTGTACTATT 59.851 41.667 0.00 0.00 0.00 1.73
165 166 4.746115 TCGAGCGTGTTTTGTGTACTATTT 59.254 37.500 0.00 0.00 0.00 1.40
166 167 5.234757 TCGAGCGTGTTTTGTGTACTATTTT 59.765 36.000 0.00 0.00 0.00 1.82
167 168 5.905181 CGAGCGTGTTTTGTGTACTATTTTT 59.095 36.000 0.00 0.00 0.00 1.94
187 188 3.887621 TTCGTGGAGGAAAGACATAGG 57.112 47.619 0.00 0.00 0.00 2.57
188 189 1.480954 TCGTGGAGGAAAGACATAGGC 59.519 52.381 0.00 0.00 0.00 3.93
189 190 1.482593 CGTGGAGGAAAGACATAGGCT 59.517 52.381 0.00 0.00 0.00 4.58
190 191 2.693591 CGTGGAGGAAAGACATAGGCTA 59.306 50.000 0.00 0.00 0.00 3.93
191 192 3.491104 CGTGGAGGAAAGACATAGGCTAC 60.491 52.174 0.00 0.00 0.00 3.58
192 193 3.039011 TGGAGGAAAGACATAGGCTACC 58.961 50.000 0.00 0.00 0.00 3.18
193 194 3.039011 GGAGGAAAGACATAGGCTACCA 58.961 50.000 0.00 0.00 0.00 3.25
194 195 3.454812 GGAGGAAAGACATAGGCTACCAA 59.545 47.826 0.00 0.00 0.00 3.67
195 196 4.443598 GGAGGAAAGACATAGGCTACCAAG 60.444 50.000 0.00 0.00 0.00 3.61
196 197 4.104831 AGGAAAGACATAGGCTACCAAGT 58.895 43.478 0.00 0.00 0.00 3.16
197 198 4.080863 AGGAAAGACATAGGCTACCAAGTG 60.081 45.833 0.00 0.00 0.00 3.16
198 199 3.914426 AAGACATAGGCTACCAAGTGG 57.086 47.619 0.00 0.00 42.17 4.00
210 211 3.100545 CAAGTGGTCAGCTTGGTGT 57.899 52.632 0.00 0.00 39.53 4.16
211 212 1.392589 CAAGTGGTCAGCTTGGTGTT 58.607 50.000 0.00 0.00 39.53 3.32
212 213 1.334869 CAAGTGGTCAGCTTGGTGTTC 59.665 52.381 0.00 0.00 39.53 3.18
213 214 0.532862 AGTGGTCAGCTTGGTGTTCG 60.533 55.000 0.00 0.00 0.00 3.95
214 215 0.814010 GTGGTCAGCTTGGTGTTCGT 60.814 55.000 0.00 0.00 0.00 3.85
215 216 0.813610 TGGTCAGCTTGGTGTTCGTG 60.814 55.000 0.00 0.00 0.00 4.35
216 217 1.507141 GGTCAGCTTGGTGTTCGTGG 61.507 60.000 0.00 0.00 0.00 4.94
217 218 0.814010 GTCAGCTTGGTGTTCGTGGT 60.814 55.000 0.00 0.00 0.00 4.16
218 219 0.107410 TCAGCTTGGTGTTCGTGGTT 60.107 50.000 0.00 0.00 0.00 3.67
219 220 0.307760 CAGCTTGGTGTTCGTGGTTC 59.692 55.000 0.00 0.00 0.00 3.62
220 221 1.157870 AGCTTGGTGTTCGTGGTTCG 61.158 55.000 0.00 0.00 41.41 3.95
221 222 1.433837 GCTTGGTGTTCGTGGTTCGT 61.434 55.000 0.00 0.00 40.80 3.85
222 223 0.303493 CTTGGTGTTCGTGGTTCGTG 59.697 55.000 0.00 0.00 40.80 4.35
223 224 1.090625 TTGGTGTTCGTGGTTCGTGG 61.091 55.000 0.00 0.00 40.80 4.94
224 225 1.227321 GGTGTTCGTGGTTCGTGGA 60.227 57.895 0.00 0.00 40.80 4.02
225 226 0.601841 GGTGTTCGTGGTTCGTGGAT 60.602 55.000 0.00 0.00 40.80 3.41
226 227 0.511221 GTGTTCGTGGTTCGTGGATG 59.489 55.000 0.00 0.00 40.80 3.51
227 228 0.601576 TGTTCGTGGTTCGTGGATGG 60.602 55.000 0.00 0.00 40.80 3.51
228 229 1.669760 TTCGTGGTTCGTGGATGGC 60.670 57.895 0.00 0.00 40.80 4.40
229 230 2.358125 CGTGGTTCGTGGATGGCA 60.358 61.111 0.00 0.00 34.52 4.92
230 231 2.390599 CGTGGTTCGTGGATGGCAG 61.391 63.158 0.00 0.00 34.52 4.85
231 232 2.040544 GTGGTTCGTGGATGGCAGG 61.041 63.158 0.00 0.00 0.00 4.85
232 233 2.351276 GGTTCGTGGATGGCAGGT 59.649 61.111 0.00 0.00 0.00 4.00
233 234 1.195442 TGGTTCGTGGATGGCAGGTA 61.195 55.000 0.00 0.00 0.00 3.08
234 235 0.180406 GGTTCGTGGATGGCAGGTAT 59.820 55.000 0.00 0.00 0.00 2.73
235 236 1.299541 GTTCGTGGATGGCAGGTATG 58.700 55.000 0.00 0.00 0.00 2.39
236 237 0.180171 TTCGTGGATGGCAGGTATGG 59.820 55.000 0.00 0.00 0.00 2.74
237 238 0.980754 TCGTGGATGGCAGGTATGGT 60.981 55.000 0.00 0.00 0.00 3.55
238 239 0.107214 CGTGGATGGCAGGTATGGTT 60.107 55.000 0.00 0.00 0.00 3.67
239 240 1.681780 CGTGGATGGCAGGTATGGTTT 60.682 52.381 0.00 0.00 0.00 3.27
240 241 2.456577 GTGGATGGCAGGTATGGTTTT 58.543 47.619 0.00 0.00 0.00 2.43
241 242 2.427095 GTGGATGGCAGGTATGGTTTTC 59.573 50.000 0.00 0.00 0.00 2.29
242 243 2.311542 TGGATGGCAGGTATGGTTTTCT 59.688 45.455 0.00 0.00 0.00 2.52
243 244 2.952310 GGATGGCAGGTATGGTTTTCTC 59.048 50.000 0.00 0.00 0.00 2.87
244 245 2.507407 TGGCAGGTATGGTTTTCTCC 57.493 50.000 0.00 0.00 0.00 3.71
245 246 1.992557 TGGCAGGTATGGTTTTCTCCT 59.007 47.619 0.00 0.00 0.00 3.69
246 247 2.378547 TGGCAGGTATGGTTTTCTCCTT 59.621 45.455 0.00 0.00 0.00 3.36
247 248 3.017442 GGCAGGTATGGTTTTCTCCTTC 58.983 50.000 0.00 0.00 0.00 3.46
248 249 2.678336 GCAGGTATGGTTTTCTCCTTCG 59.322 50.000 0.00 0.00 0.00 3.79
249 250 3.270877 CAGGTATGGTTTTCTCCTTCGG 58.729 50.000 0.00 0.00 0.00 4.30
250 251 2.014857 GGTATGGTTTTCTCCTTCGGC 58.985 52.381 0.00 0.00 0.00 5.54
251 252 1.664151 GTATGGTTTTCTCCTTCGGCG 59.336 52.381 0.00 0.00 0.00 6.46
252 253 0.036306 ATGGTTTTCTCCTTCGGCGT 59.964 50.000 6.85 0.00 0.00 5.68
253 254 0.601841 TGGTTTTCTCCTTCGGCGTC 60.602 55.000 6.85 0.00 0.00 5.19
254 255 0.320508 GGTTTTCTCCTTCGGCGTCT 60.321 55.000 6.85 0.00 0.00 4.18
255 256 1.509703 GTTTTCTCCTTCGGCGTCTT 58.490 50.000 6.85 0.00 0.00 3.01
256 257 2.611224 GGTTTTCTCCTTCGGCGTCTTA 60.611 50.000 6.85 0.00 0.00 2.10
257 258 2.649331 TTTCTCCTTCGGCGTCTTAG 57.351 50.000 6.85 1.13 0.00 2.18
258 259 1.542492 TTCTCCTTCGGCGTCTTAGT 58.458 50.000 6.85 0.00 0.00 2.24
259 260 1.093159 TCTCCTTCGGCGTCTTAGTC 58.907 55.000 6.85 0.00 0.00 2.59
260 261 0.248134 CTCCTTCGGCGTCTTAGTCG 60.248 60.000 6.85 0.00 41.09 4.18
261 262 0.957395 TCCTTCGGCGTCTTAGTCGT 60.957 55.000 6.85 0.00 40.52 4.34
262 263 0.797249 CCTTCGGCGTCTTAGTCGTG 60.797 60.000 6.85 0.00 40.52 4.35
263 264 0.167470 CTTCGGCGTCTTAGTCGTGA 59.833 55.000 6.85 0.00 40.52 4.35
264 265 0.806868 TTCGGCGTCTTAGTCGTGAT 59.193 50.000 6.85 0.00 40.52 3.06
265 266 0.098200 TCGGCGTCTTAGTCGTGATG 59.902 55.000 6.85 0.00 40.52 3.07
266 267 0.866061 CGGCGTCTTAGTCGTGATGG 60.866 60.000 0.00 0.00 34.13 3.51
267 268 0.527817 GGCGTCTTAGTCGTGATGGG 60.528 60.000 0.68 0.00 0.00 4.00
268 269 0.527817 GCGTCTTAGTCGTGATGGGG 60.528 60.000 0.68 0.00 0.00 4.96
269 270 0.815734 CGTCTTAGTCGTGATGGGGT 59.184 55.000 0.00 0.00 0.00 4.95
270 271 1.469251 CGTCTTAGTCGTGATGGGGTG 60.469 57.143 0.00 0.00 0.00 4.61
271 272 0.535335 TCTTAGTCGTGATGGGGTGC 59.465 55.000 0.00 0.00 0.00 5.01
272 273 0.462047 CTTAGTCGTGATGGGGTGCC 60.462 60.000 0.00 0.00 0.00 5.01
273 274 1.195442 TTAGTCGTGATGGGGTGCCA 61.195 55.000 0.00 0.00 0.00 4.92
274 275 1.613317 TAGTCGTGATGGGGTGCCAG 61.613 60.000 0.00 0.00 0.00 4.85
275 276 2.606213 TCGTGATGGGGTGCCAGA 60.606 61.111 0.00 0.00 0.00 3.86
276 277 1.995066 TCGTGATGGGGTGCCAGAT 60.995 57.895 0.00 0.00 0.00 2.90
277 278 1.524621 CGTGATGGGGTGCCAGATC 60.525 63.158 0.00 0.00 0.00 2.75
278 279 1.918253 GTGATGGGGTGCCAGATCT 59.082 57.895 0.00 0.00 0.00 2.75
279 280 0.465097 GTGATGGGGTGCCAGATCTG 60.465 60.000 16.24 16.24 0.00 2.90
291 292 1.863267 CAGATCTGGAGTTCGATGGC 58.137 55.000 15.38 0.00 0.00 4.40
292 293 0.387202 AGATCTGGAGTTCGATGGCG 59.613 55.000 0.00 0.00 39.35 5.69
293 294 0.103208 GATCTGGAGTTCGATGGCGT 59.897 55.000 0.00 0.00 38.98 5.68
294 295 0.179100 ATCTGGAGTTCGATGGCGTG 60.179 55.000 0.00 0.00 38.98 5.34
295 296 1.079819 CTGGAGTTCGATGGCGTGT 60.080 57.895 0.00 0.00 38.98 4.49
296 297 1.078759 CTGGAGTTCGATGGCGTGTC 61.079 60.000 0.00 0.00 38.98 3.67
297 298 1.810030 GGAGTTCGATGGCGTGTCC 60.810 63.158 0.00 0.00 38.98 4.02
298 299 2.126071 AGTTCGATGGCGTGTCCG 60.126 61.111 0.00 0.00 38.98 4.79
299 300 2.126228 GTTCGATGGCGTGTCCGA 60.126 61.111 0.00 0.00 38.98 4.55
300 301 2.158959 GTTCGATGGCGTGTCCGAG 61.159 63.158 0.00 0.00 38.98 4.63
301 302 3.350909 TTCGATGGCGTGTCCGAGG 62.351 63.158 0.00 0.00 38.98 4.63
302 303 4.129737 CGATGGCGTGTCCGAGGT 62.130 66.667 0.00 0.00 37.80 3.85
303 304 2.509336 GATGGCGTGTCCGAGGTG 60.509 66.667 0.00 0.00 37.80 4.00
304 305 3.296709 GATGGCGTGTCCGAGGTGT 62.297 63.158 0.00 0.00 37.80 4.16
305 306 2.781595 GATGGCGTGTCCGAGGTGTT 62.782 60.000 0.00 0.00 37.80 3.32
306 307 3.041940 GGCGTGTCCGAGGTGTTG 61.042 66.667 0.00 0.00 35.63 3.33
307 308 3.712881 GCGTGTCCGAGGTGTTGC 61.713 66.667 0.00 0.00 35.63 4.17
308 309 3.041940 CGTGTCCGAGGTGTTGCC 61.042 66.667 0.00 0.00 35.63 4.52
316 317 2.743718 AGGTGTTGCCTCGGTCTG 59.256 61.111 0.00 0.00 46.96 3.51
317 318 1.837051 AGGTGTTGCCTCGGTCTGA 60.837 57.895 0.00 0.00 46.96 3.27
318 319 1.194781 AGGTGTTGCCTCGGTCTGAT 61.195 55.000 0.00 0.00 46.96 2.90
319 320 0.321653 GGTGTTGCCTCGGTCTGATT 60.322 55.000 0.00 0.00 0.00 2.57
320 321 1.079503 GTGTTGCCTCGGTCTGATTC 58.920 55.000 0.00 0.00 0.00 2.52
321 322 0.389817 TGTTGCCTCGGTCTGATTCG 60.390 55.000 0.00 0.00 0.00 3.34
322 323 0.389948 GTTGCCTCGGTCTGATTCGT 60.390 55.000 3.96 0.00 0.00 3.85
323 324 0.320374 TTGCCTCGGTCTGATTCGTT 59.680 50.000 3.96 0.00 0.00 3.85
324 325 0.108804 TGCCTCGGTCTGATTCGTTC 60.109 55.000 3.96 0.00 0.00 3.95
325 326 0.108804 GCCTCGGTCTGATTCGTTCA 60.109 55.000 3.96 0.00 0.00 3.18
326 327 1.671850 GCCTCGGTCTGATTCGTTCAA 60.672 52.381 3.96 0.00 32.78 2.69
327 328 1.993370 CCTCGGTCTGATTCGTTCAAC 59.007 52.381 3.96 0.00 32.78 3.18
328 329 1.649171 CTCGGTCTGATTCGTTCAACG 59.351 52.381 2.64 2.64 44.19 4.10
329 330 0.713883 CGGTCTGATTCGTTCAACGG 59.286 55.000 10.69 0.00 42.81 4.44
330 331 0.442699 GGTCTGATTCGTTCAACGGC 59.557 55.000 10.69 0.72 42.81 5.68
331 332 1.144969 GTCTGATTCGTTCAACGGCA 58.855 50.000 10.69 5.55 42.81 5.69
332 333 1.126846 GTCTGATTCGTTCAACGGCAG 59.873 52.381 10.69 14.68 42.81 4.85
333 334 1.148310 CTGATTCGTTCAACGGCAGT 58.852 50.000 10.69 0.00 42.81 4.40
334 335 0.865111 TGATTCGTTCAACGGCAGTG 59.135 50.000 10.69 0.00 42.81 3.66
335 336 0.165944 GATTCGTTCAACGGCAGTGG 59.834 55.000 10.69 0.00 42.81 4.00
336 337 1.852067 ATTCGTTCAACGGCAGTGGC 61.852 55.000 10.69 6.62 42.81 5.01
337 338 2.933878 TTCGTTCAACGGCAGTGGCT 62.934 55.000 15.48 0.00 42.81 4.75
338 339 2.542907 CGTTCAACGGCAGTGGCTT 61.543 57.895 15.48 1.74 38.08 4.35
339 340 1.282875 GTTCAACGGCAGTGGCTTC 59.717 57.895 15.48 0.00 40.87 3.86
340 341 1.153066 TTCAACGGCAGTGGCTTCA 60.153 52.632 15.48 0.00 40.87 3.02
341 342 1.444119 TTCAACGGCAGTGGCTTCAC 61.444 55.000 15.48 0.00 40.87 3.18
356 357 5.183228 TGGCTTCACTTATGTTAAGCTACC 58.817 41.667 20.62 9.91 46.72 3.18
357 358 5.045869 TGGCTTCACTTATGTTAAGCTACCT 60.046 40.000 20.62 0.00 46.72 3.08
358 359 5.880887 GGCTTCACTTATGTTAAGCTACCTT 59.119 40.000 20.62 0.00 46.72 3.50
359 360 6.183360 GGCTTCACTTATGTTAAGCTACCTTG 60.183 42.308 20.62 0.00 46.72 3.61
360 361 6.183360 GCTTCACTTATGTTAAGCTACCTTGG 60.183 42.308 16.42 0.00 45.11 3.61
361 362 6.614694 TCACTTATGTTAAGCTACCTTGGA 57.385 37.500 0.00 0.00 32.47 3.53
362 363 6.640518 TCACTTATGTTAAGCTACCTTGGAG 58.359 40.000 0.00 0.00 32.47 3.86
363 364 5.817816 CACTTATGTTAAGCTACCTTGGAGG 59.182 44.000 0.00 0.00 42.49 4.30
372 373 3.987404 CCTTGGAGGTCCGCAAAG 58.013 61.111 2.76 2.76 39.43 2.77
373 374 2.335712 CCTTGGAGGTCCGCAAAGC 61.336 63.158 4.22 0.00 39.43 3.51
374 375 1.302832 CTTGGAGGTCCGCAAAGCT 60.303 57.895 0.00 0.00 39.43 3.74
375 376 1.580845 CTTGGAGGTCCGCAAAGCTG 61.581 60.000 0.00 0.00 39.43 4.24
376 377 3.435186 GGAGGTCCGCAAAGCTGC 61.435 66.667 0.00 0.00 45.75 5.25
389 390 4.224715 CAAAGCTGCATATCAGTGATGG 57.775 45.455 16.15 8.85 44.66 3.51
390 391 3.851458 AAGCTGCATATCAGTGATGGA 57.149 42.857 16.15 1.71 44.66 3.41
391 392 3.404224 AGCTGCATATCAGTGATGGAG 57.596 47.619 16.15 12.76 44.66 3.86
393 394 2.424557 CTGCATATCAGTGATGGAGCC 58.575 52.381 16.15 0.75 36.19 4.70
394 395 1.270465 TGCATATCAGTGATGGAGCCG 60.270 52.381 16.15 0.00 0.00 5.52
395 396 1.436600 CATATCAGTGATGGAGCCGC 58.563 55.000 16.15 0.00 0.00 6.53
396 397 0.037882 ATATCAGTGATGGAGCCGCG 60.038 55.000 16.15 0.00 0.00 6.46
397 398 1.391933 TATCAGTGATGGAGCCGCGT 61.392 55.000 16.15 0.00 0.00 6.01
398 399 2.635229 ATCAGTGATGGAGCCGCGTC 62.635 60.000 4.39 0.00 0.00 5.19
399 400 4.498520 AGTGATGGAGCCGCGTCG 62.499 66.667 4.92 0.00 0.00 5.12
400 401 4.492160 GTGATGGAGCCGCGTCGA 62.492 66.667 4.92 0.00 0.00 4.20
401 402 4.193334 TGATGGAGCCGCGTCGAG 62.193 66.667 4.92 0.00 0.00 4.04
414 415 4.210307 TCGAGCTCGAGTGAGGAG 57.790 61.111 33.84 3.79 44.22 3.69
415 416 1.450491 TCGAGCTCGAGTGAGGAGG 60.450 63.158 33.84 2.99 44.22 4.30
416 417 1.747367 CGAGCTCGAGTGAGGAGGT 60.747 63.158 32.06 0.00 44.31 3.85
417 418 1.806568 GAGCTCGAGTGAGGAGGTG 59.193 63.158 15.13 0.00 41.91 4.00
418 419 0.678366 GAGCTCGAGTGAGGAGGTGA 60.678 60.000 15.13 0.00 41.91 4.02
419 420 0.033601 AGCTCGAGTGAGGAGGTGAT 60.034 55.000 15.13 0.00 42.79 3.06
420 421 0.383949 GCTCGAGTGAGGAGGTGATC 59.616 60.000 15.13 0.00 42.79 2.92
433 434 5.736486 GGAGGTGATCCGTTATTCTTTTC 57.264 43.478 0.00 0.00 38.67 2.29
434 435 5.429130 GGAGGTGATCCGTTATTCTTTTCT 58.571 41.667 0.00 0.00 38.67 2.52
435 436 5.880887 GGAGGTGATCCGTTATTCTTTTCTT 59.119 40.000 0.00 0.00 38.67 2.52
436 437 6.037281 GGAGGTGATCCGTTATTCTTTTCTTC 59.963 42.308 0.00 0.00 38.67 2.87
437 438 5.581085 AGGTGATCCGTTATTCTTTTCTTCG 59.419 40.000 0.00 0.00 39.05 3.79
438 439 5.220605 GGTGATCCGTTATTCTTTTCTTCGG 60.221 44.000 0.00 0.00 38.16 4.30
439 440 5.350640 GTGATCCGTTATTCTTTTCTTCGGT 59.649 40.000 0.00 0.00 38.04 4.69
440 441 5.350365 TGATCCGTTATTCTTTTCTTCGGTG 59.650 40.000 0.00 0.00 38.04 4.94
441 442 3.998341 TCCGTTATTCTTTTCTTCGGTGG 59.002 43.478 0.00 0.00 38.04 4.61
442 443 3.425758 CCGTTATTCTTTTCTTCGGTGGC 60.426 47.826 0.00 0.00 33.20 5.01
443 444 3.435671 CGTTATTCTTTTCTTCGGTGGCT 59.564 43.478 0.00 0.00 0.00 4.75
444 445 4.669197 CGTTATTCTTTTCTTCGGTGGCTG 60.669 45.833 0.00 0.00 0.00 4.85
445 446 0.951558 TTCTTTTCTTCGGTGGCTGC 59.048 50.000 0.00 0.00 0.00 5.25
446 447 0.108585 TCTTTTCTTCGGTGGCTGCT 59.891 50.000 0.00 0.00 0.00 4.24
447 448 0.239347 CTTTTCTTCGGTGGCTGCTG 59.761 55.000 0.00 0.00 0.00 4.41
448 449 0.465460 TTTTCTTCGGTGGCTGCTGT 60.465 50.000 0.00 0.00 0.00 4.40
449 450 1.165907 TTTCTTCGGTGGCTGCTGTG 61.166 55.000 0.00 0.00 0.00 3.66
450 451 2.031012 CTTCGGTGGCTGCTGTGA 59.969 61.111 0.00 0.00 0.00 3.58
451 452 1.376424 CTTCGGTGGCTGCTGTGAT 60.376 57.895 0.00 0.00 0.00 3.06
452 453 1.642037 CTTCGGTGGCTGCTGTGATG 61.642 60.000 0.00 0.00 0.00 3.07
453 454 3.129502 CGGTGGCTGCTGTGATGG 61.130 66.667 0.00 0.00 0.00 3.51
454 455 2.034687 GGTGGCTGCTGTGATGGT 59.965 61.111 0.00 0.00 0.00 3.55
455 456 2.338015 GGTGGCTGCTGTGATGGTG 61.338 63.158 0.00 0.00 0.00 4.17
456 457 2.674033 TGGCTGCTGTGATGGTGC 60.674 61.111 0.00 0.00 0.00 5.01
457 458 2.360852 GGCTGCTGTGATGGTGCT 60.361 61.111 0.00 0.00 0.00 4.40
458 459 2.697761 GGCTGCTGTGATGGTGCTG 61.698 63.158 0.00 0.00 0.00 4.41
459 460 2.697761 GCTGCTGTGATGGTGCTGG 61.698 63.158 0.00 0.00 0.00 4.85
460 461 1.002990 CTGCTGTGATGGTGCTGGA 60.003 57.895 0.00 0.00 0.00 3.86
461 462 1.002990 TGCTGTGATGGTGCTGGAG 60.003 57.895 0.00 0.00 0.00 3.86
462 463 1.748122 GCTGTGATGGTGCTGGAGG 60.748 63.158 0.00 0.00 0.00 4.30
463 464 1.748122 CTGTGATGGTGCTGGAGGC 60.748 63.158 0.00 0.00 42.22 4.70
472 473 4.767255 GCTGGAGGCAGGTGACGG 62.767 72.222 0.00 0.00 41.35 4.79
473 474 2.997315 CTGGAGGCAGGTGACGGA 60.997 66.667 0.00 0.00 0.00 4.69
474 475 3.302347 CTGGAGGCAGGTGACGGAC 62.302 68.421 0.00 0.00 0.00 4.79
475 476 4.436998 GGAGGCAGGTGACGGACG 62.437 72.222 0.00 0.00 39.28 4.79
476 477 3.681835 GAGGCAGGTGACGGACGT 61.682 66.667 0.00 0.00 39.28 4.34
477 478 3.222354 GAGGCAGGTGACGGACGTT 62.222 63.158 0.00 0.00 39.28 3.99
478 479 3.041940 GGCAGGTGACGGACGTTG 61.042 66.667 0.00 0.00 0.00 4.10
479 480 3.041940 GCAGGTGACGGACGTTGG 61.042 66.667 0.00 0.00 0.00 3.77
480 481 2.420043 CAGGTGACGGACGTTGGT 59.580 61.111 0.00 0.00 0.00 3.67
481 482 1.954146 CAGGTGACGGACGTTGGTG 60.954 63.158 0.00 0.00 0.00 4.17
482 483 2.107546 GGTGACGGACGTTGGTGT 59.892 61.111 0.00 0.00 0.00 4.16
483 484 1.952635 GGTGACGGACGTTGGTGTC 60.953 63.158 0.00 0.00 38.17 3.67
484 485 1.227031 GTGACGGACGTTGGTGTCA 60.227 57.895 0.00 8.43 40.72 3.58
485 486 0.806884 GTGACGGACGTTGGTGTCAA 60.807 55.000 12.55 0.00 42.43 3.18
486 487 0.528901 TGACGGACGTTGGTGTCAAG 60.529 55.000 9.64 0.00 40.72 3.02
487 488 1.828331 GACGGACGTTGGTGTCAAGC 61.828 60.000 0.00 0.00 40.72 4.01
488 489 1.594293 CGGACGTTGGTGTCAAGCT 60.594 57.895 0.00 0.00 40.72 3.74
489 490 1.557443 CGGACGTTGGTGTCAAGCTC 61.557 60.000 0.00 0.00 40.72 4.09
490 491 0.531974 GGACGTTGGTGTCAAGCTCA 60.532 55.000 0.00 0.00 40.72 4.26
491 492 0.861837 GACGTTGGTGTCAAGCTCAG 59.138 55.000 0.00 0.00 38.75 3.35
492 493 0.464036 ACGTTGGTGTCAAGCTCAGA 59.536 50.000 0.00 0.00 32.92 3.27
493 494 1.143305 CGTTGGTGTCAAGCTCAGAG 58.857 55.000 0.00 0.00 32.92 3.35
494 495 1.269778 CGTTGGTGTCAAGCTCAGAGA 60.270 52.381 0.00 0.00 32.92 3.10
495 496 2.611473 CGTTGGTGTCAAGCTCAGAGAT 60.611 50.000 0.00 0.00 32.92 2.75
496 497 2.740981 GTTGGTGTCAAGCTCAGAGATG 59.259 50.000 0.00 0.00 32.92 2.90
497 498 1.973515 TGGTGTCAAGCTCAGAGATGT 59.026 47.619 0.00 0.00 0.00 3.06
498 499 2.369860 TGGTGTCAAGCTCAGAGATGTT 59.630 45.455 0.00 0.00 0.00 2.71
499 500 2.999355 GGTGTCAAGCTCAGAGATGTTC 59.001 50.000 0.00 0.00 0.00 3.18
500 501 3.306641 GGTGTCAAGCTCAGAGATGTTCT 60.307 47.826 0.00 0.00 36.25 3.01
501 502 4.081972 GGTGTCAAGCTCAGAGATGTTCTA 60.082 45.833 0.00 0.00 33.83 2.10
502 503 4.862018 GTGTCAAGCTCAGAGATGTTCTAC 59.138 45.833 0.00 0.00 33.83 2.59
503 504 4.769488 TGTCAAGCTCAGAGATGTTCTACT 59.231 41.667 0.00 0.00 33.83 2.57
504 505 5.946377 TGTCAAGCTCAGAGATGTTCTACTA 59.054 40.000 0.00 0.00 33.83 1.82
505 506 6.605194 TGTCAAGCTCAGAGATGTTCTACTAT 59.395 38.462 0.00 0.00 33.83 2.12
506 507 7.138736 GTCAAGCTCAGAGATGTTCTACTATC 58.861 42.308 0.00 0.00 33.83 2.08
507 508 7.013274 GTCAAGCTCAGAGATGTTCTACTATCT 59.987 40.741 0.00 0.00 36.41 1.98
508 509 7.559533 TCAAGCTCAGAGATGTTCTACTATCTT 59.440 37.037 0.00 0.00 33.97 2.40
509 510 7.896383 AGCTCAGAGATGTTCTACTATCTTT 57.104 36.000 0.00 0.00 33.97 2.52
510 511 8.305046 AGCTCAGAGATGTTCTACTATCTTTT 57.695 34.615 0.00 0.00 33.97 2.27
511 512 8.413229 AGCTCAGAGATGTTCTACTATCTTTTC 58.587 37.037 0.00 0.00 33.97 2.29
512 513 8.194104 GCTCAGAGATGTTCTACTATCTTTTCA 58.806 37.037 0.00 0.00 33.97 2.69
513 514 9.734620 CTCAGAGATGTTCTACTATCTTTTCAG 57.265 37.037 0.00 0.00 33.97 3.02
514 515 9.249053 TCAGAGATGTTCTACTATCTTTTCAGT 57.751 33.333 0.00 0.00 33.97 3.41
515 516 9.868277 CAGAGATGTTCTACTATCTTTTCAGTT 57.132 33.333 0.00 0.00 33.97 3.16
521 522 9.607988 TGTTCTACTATCTTTTCAGTTTTGTCA 57.392 29.630 0.00 0.00 0.00 3.58
524 525 9.778741 TCTACTATCTTTTCAGTTTTGTCATGT 57.221 29.630 0.00 0.00 0.00 3.21
526 527 7.576236 ACTATCTTTTCAGTTTTGTCATGTCG 58.424 34.615 0.00 0.00 0.00 4.35
527 528 5.168526 TCTTTTCAGTTTTGTCATGTCGG 57.831 39.130 0.00 0.00 0.00 4.79
528 529 4.638421 TCTTTTCAGTTTTGTCATGTCGGT 59.362 37.500 0.00 0.00 0.00 4.69
529 530 4.545823 TTTCAGTTTTGTCATGTCGGTC 57.454 40.909 0.00 0.00 0.00 4.79
530 531 2.489971 TCAGTTTTGTCATGTCGGTCC 58.510 47.619 0.00 0.00 0.00 4.46
531 532 2.104111 TCAGTTTTGTCATGTCGGTCCT 59.896 45.455 0.00 0.00 0.00 3.85
532 533 2.878406 CAGTTTTGTCATGTCGGTCCTT 59.122 45.455 0.00 0.00 0.00 3.36
533 534 4.062293 CAGTTTTGTCATGTCGGTCCTTA 58.938 43.478 0.00 0.00 0.00 2.69
534 535 4.062991 AGTTTTGTCATGTCGGTCCTTAC 58.937 43.478 0.00 0.00 0.00 2.34
535 536 3.755112 TTTGTCATGTCGGTCCTTACA 57.245 42.857 0.00 0.00 0.00 2.41
536 537 3.973206 TTGTCATGTCGGTCCTTACAT 57.027 42.857 0.00 1.78 36.78 2.29
542 543 4.553330 ATGTCGGTCCTTACATGACTTT 57.447 40.909 0.00 0.00 35.06 2.66
543 544 4.345859 TGTCGGTCCTTACATGACTTTT 57.654 40.909 0.00 0.00 35.01 2.27
544 545 4.062293 TGTCGGTCCTTACATGACTTTTG 58.938 43.478 0.00 0.00 35.01 2.44
545 546 4.062991 GTCGGTCCTTACATGACTTTTGT 58.937 43.478 0.00 0.00 32.63 2.83
546 547 5.221481 TGTCGGTCCTTACATGACTTTTGTA 60.221 40.000 0.00 0.00 35.01 2.41
547 548 5.119743 GTCGGTCCTTACATGACTTTTGTAC 59.880 44.000 0.00 0.00 32.63 2.90
548 549 5.011329 TCGGTCCTTACATGACTTTTGTACT 59.989 40.000 0.00 0.00 33.22 2.73
549 550 5.699458 CGGTCCTTACATGACTTTTGTACTT 59.301 40.000 0.00 0.00 33.22 2.24
550 551 6.204108 CGGTCCTTACATGACTTTTGTACTTT 59.796 38.462 0.00 0.00 33.22 2.66
551 552 7.360361 GGTCCTTACATGACTTTTGTACTTTG 58.640 38.462 0.00 0.00 33.22 2.77
552 553 7.012989 GGTCCTTACATGACTTTTGTACTTTGT 59.987 37.037 0.00 0.00 33.22 2.83
553 554 8.403236 GTCCTTACATGACTTTTGTACTTTGTT 58.597 33.333 0.00 0.00 29.60 2.83
554 555 8.962679 TCCTTACATGACTTTTGTACTTTGTTT 58.037 29.630 0.00 0.00 29.60 2.83
555 556 9.581099 CCTTACATGACTTTTGTACTTTGTTTT 57.419 29.630 0.00 0.00 29.60 2.43
626 627 8.532977 TTGGTAAGCTATCAAGAAAAATTTGC 57.467 30.769 0.00 0.00 0.00 3.68
627 628 7.665690 TGGTAAGCTATCAAGAAAAATTTGCA 58.334 30.769 0.00 0.00 0.00 4.08
628 629 8.147058 TGGTAAGCTATCAAGAAAAATTTGCAA 58.853 29.630 0.00 0.00 0.00 4.08
629 630 9.154847 GGTAAGCTATCAAGAAAAATTTGCAAT 57.845 29.630 0.00 0.00 0.00 3.56
631 632 8.836268 AAGCTATCAAGAAAAATTTGCAATCA 57.164 26.923 0.00 0.00 0.00 2.57
632 633 8.836268 AGCTATCAAGAAAAATTTGCAATCAA 57.164 26.923 0.00 0.00 0.00 2.57
633 634 8.932791 AGCTATCAAGAAAAATTTGCAATCAAG 58.067 29.630 0.00 0.00 33.12 3.02
640 641 8.146479 AGAAAAATTTGCAATCAAGGAAAGAC 57.854 30.769 0.00 0.00 32.32 3.01
931 999 1.889105 CACAGCCACGAGTTGCAGT 60.889 57.895 2.21 0.00 0.00 4.40
1364 1574 4.509737 GCTCCCCGGTAGTCACGC 62.510 72.222 0.00 0.00 0.00 5.34
1696 1969 8.201464 TGTAATGTCTGAGTTCTGAGTTTTGTA 58.799 33.333 0.00 0.00 0.00 2.41
1731 2006 0.887933 TTCTTGTACGTACCCGGGTC 59.112 55.000 34.27 20.73 38.78 4.46
1733 2008 1.280710 TCTTGTACGTACCCGGGTCTA 59.719 52.381 34.27 11.81 38.78 2.59
1751 2026 4.202121 GGTCTATTTCTACAGCATCGTCCA 60.202 45.833 0.00 0.00 0.00 4.02
1831 2106 9.525409 GATATCCAACAATTTCTGAAGATTTGG 57.475 33.333 12.40 12.40 0.00 3.28
1844 2119 9.762933 TTCTGAAGATTTGGTTAAATTTGGAAG 57.237 29.630 0.00 0.00 36.66 3.46
1856 2131 9.083080 GGTTAAATTTGGAAGTTACATACATGC 57.917 33.333 0.00 0.00 0.00 4.06
1867 2142 7.286215 AGTTACATACATGCCTACGTAGAAT 57.714 36.000 24.15 13.66 0.00 2.40
1897 2172 4.102996 ACCAAATCCATTCCAGTTGCTTTT 59.897 37.500 0.00 0.00 0.00 2.27
2102 2378 1.137086 CCTGGTGGACCATTCTACTCG 59.863 57.143 0.00 0.00 46.46 4.18
2111 2387 2.838202 ACCATTCTACTCGTGGGTGAAT 59.162 45.455 0.00 0.00 37.33 2.57
2114 2390 5.046159 ACCATTCTACTCGTGGGTGAATTTA 60.046 40.000 0.00 0.00 37.33 1.40
2115 2391 5.523916 CCATTCTACTCGTGGGTGAATTTAG 59.476 44.000 0.00 0.00 0.00 1.85
2172 2448 4.342862 AATGACATCCCTGGTATTCTCG 57.657 45.455 0.00 0.00 0.00 4.04
2229 2505 4.503741 AACTGTTTGAATGAATCGTGGG 57.496 40.909 0.00 0.00 0.00 4.61
2230 2506 3.486383 ACTGTTTGAATGAATCGTGGGT 58.514 40.909 0.00 0.00 0.00 4.51
2231 2507 3.502211 ACTGTTTGAATGAATCGTGGGTC 59.498 43.478 0.00 0.00 0.00 4.46
2232 2508 2.817258 TGTTTGAATGAATCGTGGGTCC 59.183 45.455 0.00 0.00 0.00 4.46
2233 2509 2.817258 GTTTGAATGAATCGTGGGTCCA 59.183 45.455 0.00 0.00 0.00 4.02
2234 2510 2.107950 TGAATGAATCGTGGGTCCAC 57.892 50.000 9.96 9.96 43.01 4.02
2235 2511 1.628340 TGAATGAATCGTGGGTCCACT 59.372 47.619 16.93 0.00 44.16 4.00
2236 2512 2.009774 GAATGAATCGTGGGTCCACTG 58.990 52.381 16.93 10.96 44.16 3.66
2246 2522 3.435671 CGTGGGTCCACTGTATTTTTCTC 59.564 47.826 16.93 0.00 44.16 2.87
2313 2649 4.453136 GTGAGTAGGATGATCGACTAGGTC 59.547 50.000 0.00 0.00 0.00 3.85
2411 2747 5.948992 AGGTGAAAACAACTAAGAGCATC 57.051 39.130 0.00 0.00 0.00 3.91
2432 2768 4.945246 TCTATAGCCGGACTTGACAAATC 58.055 43.478 5.05 0.00 0.00 2.17
2449 2785 2.814913 ATCCGAACCCTCAAACGCCC 62.815 60.000 0.00 0.00 0.00 6.13
2502 2838 2.621526 GACCGGTCACACCTCAAATTTT 59.378 45.455 29.75 0.00 35.66 1.82
2503 2839 2.621526 ACCGGTCACACCTCAAATTTTC 59.378 45.455 0.00 0.00 35.66 2.29
2504 2840 2.030274 CCGGTCACACCTCAAATTTTCC 60.030 50.000 0.00 0.00 35.66 3.13
2513 2849 5.656416 ACACCTCAAATTTTCCTTCTCACAA 59.344 36.000 0.00 0.00 0.00 3.33
2526 2862 1.691976 TCTCACAACCGAACACCTCAT 59.308 47.619 0.00 0.00 0.00 2.90
2527 2863 2.104111 TCTCACAACCGAACACCTCATT 59.896 45.455 0.00 0.00 0.00 2.57
2528 2864 2.878406 CTCACAACCGAACACCTCATTT 59.122 45.455 0.00 0.00 0.00 2.32
2529 2865 4.062293 CTCACAACCGAACACCTCATTTA 58.938 43.478 0.00 0.00 0.00 1.40
2530 2866 4.062293 TCACAACCGAACACCTCATTTAG 58.938 43.478 0.00 0.00 0.00 1.85
2536 2872 3.560068 CCGAACACCTCATTTAGCATACC 59.440 47.826 0.00 0.00 0.00 2.73
2537 2873 4.442706 CGAACACCTCATTTAGCATACCT 58.557 43.478 0.00 0.00 0.00 3.08
2538 2874 4.508124 CGAACACCTCATTTAGCATACCTC 59.492 45.833 0.00 0.00 0.00 3.85
2539 2875 5.428253 GAACACCTCATTTAGCATACCTCA 58.572 41.667 0.00 0.00 0.00 3.86
2540 2876 5.435686 ACACCTCATTTAGCATACCTCAA 57.564 39.130 0.00 0.00 0.00 3.02
2541 2877 5.815581 ACACCTCATTTAGCATACCTCAAA 58.184 37.500 0.00 0.00 0.00 2.69
2542 2878 6.426587 ACACCTCATTTAGCATACCTCAAAT 58.573 36.000 0.00 0.00 0.00 2.32
2543 2879 6.543831 ACACCTCATTTAGCATACCTCAAATC 59.456 38.462 0.00 0.00 0.00 2.17
2544 2880 6.016777 CACCTCATTTAGCATACCTCAAATCC 60.017 42.308 0.00 0.00 0.00 3.01
2545 2881 6.064060 CCTCATTTAGCATACCTCAAATCCA 58.936 40.000 0.00 0.00 0.00 3.41
2546 2882 6.718454 CCTCATTTAGCATACCTCAAATCCAT 59.282 38.462 0.00 0.00 0.00 3.41
2547 2883 7.884877 CCTCATTTAGCATACCTCAAATCCATA 59.115 37.037 0.00 0.00 0.00 2.74
2548 2884 9.458727 CTCATTTAGCATACCTCAAATCCATAT 57.541 33.333 0.00 0.00 0.00 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.123077 TCATGTAGGCCAGTGCTAGG 58.877 55.000 5.01 0.00 37.74 3.02
27 28 2.988010 TTCATGTAGGCCAGTGCTAG 57.012 50.000 5.01 0.00 37.74 3.42
28 29 2.092968 CCTTTCATGTAGGCCAGTGCTA 60.093 50.000 5.01 0.00 37.74 3.49
29 30 1.340405 CCTTTCATGTAGGCCAGTGCT 60.340 52.381 5.01 0.00 37.74 4.40
30 31 1.098050 CCTTTCATGTAGGCCAGTGC 58.902 55.000 5.01 0.00 0.00 4.40
31 32 1.755179 CCCTTTCATGTAGGCCAGTG 58.245 55.000 5.01 0.00 0.00 3.66
32 33 0.034089 GCCCTTTCATGTAGGCCAGT 60.034 55.000 5.01 0.00 39.60 4.00
33 34 0.034186 TGCCCTTTCATGTAGGCCAG 60.034 55.000 5.01 0.00 45.14 4.85
34 35 0.630673 ATGCCCTTTCATGTAGGCCA 59.369 50.000 5.01 8.55 45.14 5.36
35 36 2.158608 ACTATGCCCTTTCATGTAGGCC 60.159 50.000 13.01 0.00 45.14 5.19
36 37 3.214696 ACTATGCCCTTTCATGTAGGC 57.785 47.619 10.11 10.03 45.96 3.93
37 38 5.930135 AGTAACTATGCCCTTTCATGTAGG 58.070 41.667 8.98 8.98 0.00 3.18
38 39 7.552687 TGAAAGTAACTATGCCCTTTCATGTAG 59.447 37.037 9.02 0.00 44.57 2.74
39 40 7.398829 TGAAAGTAACTATGCCCTTTCATGTA 58.601 34.615 9.02 0.00 44.57 2.29
40 41 6.245408 TGAAAGTAACTATGCCCTTTCATGT 58.755 36.000 9.02 0.00 44.57 3.21
41 42 6.757897 TGAAAGTAACTATGCCCTTTCATG 57.242 37.500 9.02 0.00 44.57 3.07
43 44 5.876357 AGTGAAAGTAACTATGCCCTTTCA 58.124 37.500 9.02 9.02 46.22 2.69
44 45 6.819397 AAGTGAAAGTAACTATGCCCTTTC 57.181 37.500 0.00 0.00 41.86 2.62
45 46 7.722285 TGTTAAGTGAAAGTAACTATGCCCTTT 59.278 33.333 0.00 0.00 32.51 3.11
46 47 7.228590 TGTTAAGTGAAAGTAACTATGCCCTT 58.771 34.615 0.00 0.00 32.51 3.95
47 48 6.775708 TGTTAAGTGAAAGTAACTATGCCCT 58.224 36.000 0.00 0.00 32.51 5.19
48 49 7.120726 ACATGTTAAGTGAAAGTAACTATGCCC 59.879 37.037 0.00 0.00 32.51 5.36
49 50 8.040716 ACATGTTAAGTGAAAGTAACTATGCC 57.959 34.615 0.00 0.00 32.51 4.40
50 51 8.175716 GGACATGTTAAGTGAAAGTAACTATGC 58.824 37.037 0.00 0.00 32.51 3.14
51 52 9.214957 TGGACATGTTAAGTGAAAGTAACTATG 57.785 33.333 0.00 0.00 32.51 2.23
52 53 9.216117 GTGGACATGTTAAGTGAAAGTAACTAT 57.784 33.333 0.00 0.00 32.51 2.12
53 54 8.205512 TGTGGACATGTTAAGTGAAAGTAACTA 58.794 33.333 0.00 0.00 32.51 2.24
54 55 7.012044 GTGTGGACATGTTAAGTGAAAGTAACT 59.988 37.037 0.00 0.00 32.51 2.24
55 56 7.012044 AGTGTGGACATGTTAAGTGAAAGTAAC 59.988 37.037 0.00 0.00 0.00 2.50
56 57 7.011950 CAGTGTGGACATGTTAAGTGAAAGTAA 59.988 37.037 0.00 0.00 0.00 2.24
57 58 6.481976 CAGTGTGGACATGTTAAGTGAAAGTA 59.518 38.462 0.00 0.00 0.00 2.24
58 59 5.296780 CAGTGTGGACATGTTAAGTGAAAGT 59.703 40.000 0.00 0.00 0.00 2.66
59 60 5.751680 CAGTGTGGACATGTTAAGTGAAAG 58.248 41.667 0.00 0.00 0.00 2.62
60 61 4.036262 GCAGTGTGGACATGTTAAGTGAAA 59.964 41.667 0.00 0.00 0.00 2.69
61 62 3.563808 GCAGTGTGGACATGTTAAGTGAA 59.436 43.478 0.00 0.00 0.00 3.18
62 63 3.138304 GCAGTGTGGACATGTTAAGTGA 58.862 45.455 0.00 0.00 0.00 3.41
63 64 2.096268 CGCAGTGTGGACATGTTAAGTG 60.096 50.000 0.00 0.93 0.00 3.16
64 65 2.143122 CGCAGTGTGGACATGTTAAGT 58.857 47.619 0.00 0.00 0.00 2.24
65 66 2.412870 TCGCAGTGTGGACATGTTAAG 58.587 47.619 0.00 0.00 0.00 1.85
66 67 2.535012 TCGCAGTGTGGACATGTTAA 57.465 45.000 0.00 0.00 0.00 2.01
67 68 2.535012 TTCGCAGTGTGGACATGTTA 57.465 45.000 0.00 0.00 0.00 2.41
68 69 1.674359 TTTCGCAGTGTGGACATGTT 58.326 45.000 0.00 0.00 0.00 2.71
69 70 1.674359 TTTTCGCAGTGTGGACATGT 58.326 45.000 0.00 0.00 0.00 3.21
70 71 2.030893 ACATTTTCGCAGTGTGGACATG 60.031 45.455 9.18 9.18 0.00 3.21
71 72 2.226437 GACATTTTCGCAGTGTGGACAT 59.774 45.455 3.37 0.00 0.00 3.06
72 73 1.601903 GACATTTTCGCAGTGTGGACA 59.398 47.619 3.37 0.00 0.00 4.02
73 74 1.601903 TGACATTTTCGCAGTGTGGAC 59.398 47.619 3.37 0.00 0.00 4.02
74 75 1.960417 TGACATTTTCGCAGTGTGGA 58.040 45.000 3.37 0.00 0.00 4.02
75 76 2.995466 ATGACATTTTCGCAGTGTGG 57.005 45.000 3.37 0.00 0.00 4.17
76 77 5.241378 GAAAATGACATTTTCGCAGTGTG 57.759 39.130 28.72 0.00 45.77 3.82
85 86 5.814705 TGTTTGCTTCGGAAAATGACATTTT 59.185 32.000 22.98 22.98 44.56 1.82
86 87 5.355596 TGTTTGCTTCGGAAAATGACATTT 58.644 33.333 7.62 7.62 0.00 2.32
87 88 4.942852 TGTTTGCTTCGGAAAATGACATT 58.057 34.783 0.00 0.00 0.00 2.71
88 89 4.582701 TGTTTGCTTCGGAAAATGACAT 57.417 36.364 0.00 0.00 0.00 3.06
89 90 4.358851 CTTGTTTGCTTCGGAAAATGACA 58.641 39.130 0.00 0.00 0.00 3.58
90 91 3.735746 CCTTGTTTGCTTCGGAAAATGAC 59.264 43.478 0.00 0.00 0.00 3.06
91 92 3.798548 GCCTTGTTTGCTTCGGAAAATGA 60.799 43.478 0.00 0.00 0.00 2.57
92 93 2.476241 GCCTTGTTTGCTTCGGAAAATG 59.524 45.455 0.00 0.00 0.00 2.32
93 94 2.754472 GCCTTGTTTGCTTCGGAAAAT 58.246 42.857 0.00 0.00 0.00 1.82
94 95 1.535015 CGCCTTGTTTGCTTCGGAAAA 60.535 47.619 0.00 0.00 0.00 2.29
95 96 0.030101 CGCCTTGTTTGCTTCGGAAA 59.970 50.000 0.00 0.00 0.00 3.13
96 97 0.816018 TCGCCTTGTTTGCTTCGGAA 60.816 50.000 0.00 0.00 0.00 4.30
97 98 0.605319 ATCGCCTTGTTTGCTTCGGA 60.605 50.000 0.00 0.00 0.00 4.55
98 99 0.240945 AATCGCCTTGTTTGCTTCGG 59.759 50.000 0.00 0.00 0.00 4.30
99 100 2.050477 AAATCGCCTTGTTTGCTTCG 57.950 45.000 0.00 0.00 0.00 3.79
100 101 4.742659 TGTAAAAATCGCCTTGTTTGCTTC 59.257 37.500 0.00 0.00 0.00 3.86
101 102 4.688021 TGTAAAAATCGCCTTGTTTGCTT 58.312 34.783 0.00 0.00 0.00 3.91
102 103 4.314740 TGTAAAAATCGCCTTGTTTGCT 57.685 36.364 0.00 0.00 0.00 3.91
103 104 5.590104 ATTGTAAAAATCGCCTTGTTTGC 57.410 34.783 0.00 0.00 0.00 3.68
104 105 5.627367 TCGATTGTAAAAATCGCCTTGTTTG 59.373 36.000 14.02 0.00 46.42 2.93
105 106 5.764131 TCGATTGTAAAAATCGCCTTGTTT 58.236 33.333 14.02 0.00 46.42 2.83
106 107 5.365403 TCGATTGTAAAAATCGCCTTGTT 57.635 34.783 14.02 0.00 46.42 2.83
107 108 5.180492 TCTTCGATTGTAAAAATCGCCTTGT 59.820 36.000 14.02 0.00 46.42 3.16
108 109 5.627172 TCTTCGATTGTAAAAATCGCCTTG 58.373 37.500 14.02 5.85 46.42 3.61
109 110 5.873179 TCTTCGATTGTAAAAATCGCCTT 57.127 34.783 14.02 0.00 46.42 4.35
110 111 5.873179 TTCTTCGATTGTAAAAATCGCCT 57.127 34.783 14.02 0.00 46.42 5.52
111 112 5.002189 CGTTTCTTCGATTGTAAAAATCGCC 59.998 40.000 14.02 0.24 46.42 5.54
112 113 5.562623 ACGTTTCTTCGATTGTAAAAATCGC 59.437 36.000 14.02 0.97 46.42 4.58
115 116 9.679596 CGTATACGTTTCTTCGATTGTAAAAAT 57.320 29.630 17.16 0.00 34.70 1.82
141 142 1.856597 AGTACACAAAACACGCTCGAC 59.143 47.619 0.00 0.00 0.00 4.20
142 143 2.212869 AGTACACAAAACACGCTCGA 57.787 45.000 0.00 0.00 0.00 4.04
143 144 4.640805 AATAGTACACAAAACACGCTCG 57.359 40.909 0.00 0.00 0.00 5.03
164 165 5.001232 CCTATGTCTTTCCTCCACGAAAAA 58.999 41.667 0.00 0.00 31.56 1.94
165 166 4.575885 CCTATGTCTTTCCTCCACGAAAA 58.424 43.478 0.00 0.00 31.56 2.29
166 167 3.618997 GCCTATGTCTTTCCTCCACGAAA 60.619 47.826 0.00 0.00 0.00 3.46
167 168 2.093658 GCCTATGTCTTTCCTCCACGAA 60.094 50.000 0.00 0.00 0.00 3.85
168 169 1.480954 GCCTATGTCTTTCCTCCACGA 59.519 52.381 0.00 0.00 0.00 4.35
169 170 1.482593 AGCCTATGTCTTTCCTCCACG 59.517 52.381 0.00 0.00 0.00 4.94
170 171 3.181464 GGTAGCCTATGTCTTTCCTCCAC 60.181 52.174 0.00 0.00 0.00 4.02
171 172 3.039011 GGTAGCCTATGTCTTTCCTCCA 58.961 50.000 0.00 0.00 0.00 3.86
172 173 3.039011 TGGTAGCCTATGTCTTTCCTCC 58.961 50.000 0.00 0.00 0.00 4.30
173 174 4.162509 ACTTGGTAGCCTATGTCTTTCCTC 59.837 45.833 0.00 0.00 0.00 3.71
174 175 4.080863 CACTTGGTAGCCTATGTCTTTCCT 60.081 45.833 0.00 0.00 0.00 3.36
175 176 4.192317 CACTTGGTAGCCTATGTCTTTCC 58.808 47.826 0.00 0.00 0.00 3.13
176 177 4.192317 CCACTTGGTAGCCTATGTCTTTC 58.808 47.826 0.00 0.00 0.00 2.62
177 178 4.222124 CCACTTGGTAGCCTATGTCTTT 57.778 45.455 0.00 0.00 0.00 2.52
178 179 3.914426 CCACTTGGTAGCCTATGTCTT 57.086 47.619 0.00 0.00 0.00 3.01
192 193 1.334869 GAACACCAAGCTGACCACTTG 59.665 52.381 0.00 0.00 43.36 3.16
193 194 1.680338 GAACACCAAGCTGACCACTT 58.320 50.000 0.00 0.00 0.00 3.16
194 195 0.532862 CGAACACCAAGCTGACCACT 60.533 55.000 0.00 0.00 0.00 4.00
195 196 0.814010 ACGAACACCAAGCTGACCAC 60.814 55.000 0.00 0.00 0.00 4.16
196 197 0.813610 CACGAACACCAAGCTGACCA 60.814 55.000 0.00 0.00 0.00 4.02
197 198 1.507141 CCACGAACACCAAGCTGACC 61.507 60.000 0.00 0.00 0.00 4.02
198 199 0.814010 ACCACGAACACCAAGCTGAC 60.814 55.000 0.00 0.00 0.00 3.51
199 200 0.107410 AACCACGAACACCAAGCTGA 60.107 50.000 0.00 0.00 0.00 4.26
200 201 0.307760 GAACCACGAACACCAAGCTG 59.692 55.000 0.00 0.00 0.00 4.24
201 202 1.157870 CGAACCACGAACACCAAGCT 61.158 55.000 0.00 0.00 45.77 3.74
202 203 1.278637 CGAACCACGAACACCAAGC 59.721 57.895 0.00 0.00 45.77 4.01
203 204 0.303493 CACGAACCACGAACACCAAG 59.697 55.000 0.00 0.00 45.77 3.61
204 205 1.090625 CCACGAACCACGAACACCAA 61.091 55.000 0.00 0.00 45.77 3.67
205 206 1.521906 CCACGAACCACGAACACCA 60.522 57.895 0.00 0.00 45.77 4.17
206 207 0.601841 ATCCACGAACCACGAACACC 60.602 55.000 0.00 0.00 45.77 4.16
207 208 0.511221 CATCCACGAACCACGAACAC 59.489 55.000 0.00 0.00 45.77 3.32
208 209 0.601576 CCATCCACGAACCACGAACA 60.602 55.000 0.00 0.00 45.77 3.18
209 210 1.908066 GCCATCCACGAACCACGAAC 61.908 60.000 0.00 0.00 45.77 3.95
210 211 1.669760 GCCATCCACGAACCACGAA 60.670 57.895 0.00 0.00 45.77 3.85
211 212 2.047655 GCCATCCACGAACCACGA 60.048 61.111 0.00 0.00 45.77 4.35
213 214 2.040544 CCTGCCATCCACGAACCAC 61.041 63.158 0.00 0.00 0.00 4.16
214 215 1.195442 TACCTGCCATCCACGAACCA 61.195 55.000 0.00 0.00 0.00 3.67
215 216 0.180406 ATACCTGCCATCCACGAACC 59.820 55.000 0.00 0.00 0.00 3.62
216 217 1.299541 CATACCTGCCATCCACGAAC 58.700 55.000 0.00 0.00 0.00 3.95
217 218 0.180171 CCATACCTGCCATCCACGAA 59.820 55.000 0.00 0.00 0.00 3.85
218 219 0.980754 ACCATACCTGCCATCCACGA 60.981 55.000 0.00 0.00 0.00 4.35
219 220 0.107214 AACCATACCTGCCATCCACG 60.107 55.000 0.00 0.00 0.00 4.94
220 221 2.143876 AAACCATACCTGCCATCCAC 57.856 50.000 0.00 0.00 0.00 4.02
221 222 2.311542 AGAAAACCATACCTGCCATCCA 59.688 45.455 0.00 0.00 0.00 3.41
222 223 2.952310 GAGAAAACCATACCTGCCATCC 59.048 50.000 0.00 0.00 0.00 3.51
223 224 2.952310 GGAGAAAACCATACCTGCCATC 59.048 50.000 0.00 0.00 0.00 3.51
224 225 2.582636 AGGAGAAAACCATACCTGCCAT 59.417 45.455 0.00 0.00 0.00 4.40
225 226 1.992557 AGGAGAAAACCATACCTGCCA 59.007 47.619 0.00 0.00 0.00 4.92
226 227 2.808906 AGGAGAAAACCATACCTGCC 57.191 50.000 0.00 0.00 0.00 4.85
227 228 2.678336 CGAAGGAGAAAACCATACCTGC 59.322 50.000 0.00 0.00 0.00 4.85
244 245 0.167470 TCACGACTAAGACGCCGAAG 59.833 55.000 0.00 0.00 0.00 3.79
245 246 0.806868 ATCACGACTAAGACGCCGAA 59.193 50.000 0.00 0.00 0.00 4.30
246 247 0.098200 CATCACGACTAAGACGCCGA 59.902 55.000 0.00 0.00 0.00 5.54
247 248 0.866061 CCATCACGACTAAGACGCCG 60.866 60.000 0.00 0.00 0.00 6.46
248 249 0.527817 CCCATCACGACTAAGACGCC 60.528 60.000 0.00 0.00 0.00 5.68
249 250 0.527817 CCCCATCACGACTAAGACGC 60.528 60.000 0.00 0.00 0.00 5.19
250 251 0.815734 ACCCCATCACGACTAAGACG 59.184 55.000 0.00 0.00 0.00 4.18
251 252 1.739371 GCACCCCATCACGACTAAGAC 60.739 57.143 0.00 0.00 0.00 3.01
252 253 0.535335 GCACCCCATCACGACTAAGA 59.465 55.000 0.00 0.00 0.00 2.10
253 254 0.462047 GGCACCCCATCACGACTAAG 60.462 60.000 0.00 0.00 0.00 2.18
254 255 1.195442 TGGCACCCCATCACGACTAA 61.195 55.000 0.00 0.00 35.79 2.24
255 256 1.610967 TGGCACCCCATCACGACTA 60.611 57.895 0.00 0.00 35.79 2.59
256 257 2.927856 TGGCACCCCATCACGACT 60.928 61.111 0.00 0.00 35.79 4.18
257 258 2.257409 ATCTGGCACCCCATCACGAC 62.257 60.000 0.00 0.00 41.21 4.34
258 259 1.971505 GATCTGGCACCCCATCACGA 61.972 60.000 0.00 0.00 41.21 4.35
259 260 1.524621 GATCTGGCACCCCATCACG 60.525 63.158 0.00 0.00 41.21 4.35
260 261 0.465097 CAGATCTGGCACCCCATCAC 60.465 60.000 15.38 0.00 41.21 3.06
261 262 1.638679 CCAGATCTGGCACCCCATCA 61.639 60.000 28.45 0.00 44.73 3.07
262 263 1.150081 CCAGATCTGGCACCCCATC 59.850 63.158 28.45 0.00 44.73 3.51
263 264 3.339042 CCAGATCTGGCACCCCAT 58.661 61.111 28.45 0.00 44.73 4.00
272 273 1.863267 GCCATCGAACTCCAGATCTG 58.137 55.000 16.24 16.24 0.00 2.90
273 274 0.387202 CGCCATCGAACTCCAGATCT 59.613 55.000 0.00 0.00 38.10 2.75
274 275 0.103208 ACGCCATCGAACTCCAGATC 59.897 55.000 0.00 0.00 39.41 2.75
275 276 0.179100 CACGCCATCGAACTCCAGAT 60.179 55.000 0.00 0.00 39.41 2.90
276 277 1.215382 CACGCCATCGAACTCCAGA 59.785 57.895 0.00 0.00 39.41 3.86
277 278 1.078759 GACACGCCATCGAACTCCAG 61.079 60.000 0.00 0.00 39.41 3.86
278 279 1.080093 GACACGCCATCGAACTCCA 60.080 57.895 0.00 0.00 39.41 3.86
279 280 1.810030 GGACACGCCATCGAACTCC 60.810 63.158 0.00 0.00 39.41 3.85
280 281 2.158959 CGGACACGCCATCGAACTC 61.159 63.158 0.00 0.00 39.41 3.01
281 282 2.126071 CGGACACGCCATCGAACT 60.126 61.111 0.00 0.00 39.41 3.01
282 283 2.126228 TCGGACACGCCATCGAAC 60.126 61.111 0.00 0.00 40.69 3.95
283 284 2.180769 CTCGGACACGCCATCGAA 59.819 61.111 0.00 0.00 40.69 3.71
284 285 3.822192 CCTCGGACACGCCATCGA 61.822 66.667 0.00 0.00 40.69 3.59
285 286 4.129737 ACCTCGGACACGCCATCG 62.130 66.667 0.00 0.00 40.69 3.84
286 287 2.509336 CACCTCGGACACGCCATC 60.509 66.667 0.00 0.00 40.69 3.51
287 288 2.879233 AACACCTCGGACACGCCAT 61.879 57.895 0.00 0.00 40.69 4.40
288 289 3.542676 AACACCTCGGACACGCCA 61.543 61.111 0.00 0.00 40.69 5.69
289 290 3.041940 CAACACCTCGGACACGCC 61.042 66.667 0.00 0.00 40.69 5.68
290 291 3.712881 GCAACACCTCGGACACGC 61.713 66.667 0.00 0.00 40.69 5.34
291 292 3.041940 GGCAACACCTCGGACACG 61.042 66.667 0.00 0.00 42.74 4.49
300 301 0.321653 AATCAGACCGAGGCAACACC 60.322 55.000 0.00 0.00 41.41 4.16
301 302 1.079503 GAATCAGACCGAGGCAACAC 58.920 55.000 0.00 0.00 41.41 3.32
302 303 0.389817 CGAATCAGACCGAGGCAACA 60.390 55.000 0.00 0.00 41.41 3.33
303 304 0.389948 ACGAATCAGACCGAGGCAAC 60.390 55.000 0.00 0.00 0.00 4.17
304 305 0.320374 AACGAATCAGACCGAGGCAA 59.680 50.000 0.00 0.00 0.00 4.52
305 306 0.108804 GAACGAATCAGACCGAGGCA 60.109 55.000 0.00 0.00 0.00 4.75
306 307 0.108804 TGAACGAATCAGACCGAGGC 60.109 55.000 0.00 0.00 33.04 4.70
307 308 1.993370 GTTGAACGAATCAGACCGAGG 59.007 52.381 0.00 0.00 39.77 4.63
308 309 1.649171 CGTTGAACGAATCAGACCGAG 59.351 52.381 13.13 0.00 46.05 4.63
309 310 1.667756 CCGTTGAACGAATCAGACCGA 60.668 52.381 20.47 0.00 46.05 4.69
310 311 0.713883 CCGTTGAACGAATCAGACCG 59.286 55.000 20.47 0.00 46.05 4.79
311 312 0.442699 GCCGTTGAACGAATCAGACC 59.557 55.000 20.47 0.00 46.05 3.85
312 313 1.126846 CTGCCGTTGAACGAATCAGAC 59.873 52.381 20.47 0.22 46.05 3.51
313 314 1.270094 ACTGCCGTTGAACGAATCAGA 60.270 47.619 27.36 6.08 46.05 3.27
314 315 1.136252 CACTGCCGTTGAACGAATCAG 60.136 52.381 20.47 21.85 46.05 2.90
315 316 0.865111 CACTGCCGTTGAACGAATCA 59.135 50.000 20.47 12.37 46.05 2.57
316 317 0.165944 CCACTGCCGTTGAACGAATC 59.834 55.000 20.47 8.33 46.05 2.52
317 318 1.852067 GCCACTGCCGTTGAACGAAT 61.852 55.000 20.47 0.00 46.05 3.34
318 319 2.539338 GCCACTGCCGTTGAACGAA 61.539 57.895 20.47 6.10 46.05 3.85
319 320 2.933878 AAGCCACTGCCGTTGAACGA 62.934 55.000 20.47 0.00 42.28 3.85
320 321 2.443957 GAAGCCACTGCCGTTGAACG 62.444 60.000 11.30 11.30 42.11 3.95
321 322 1.282875 GAAGCCACTGCCGTTGAAC 59.717 57.895 0.00 0.00 38.69 3.18
322 323 1.153066 TGAAGCCACTGCCGTTGAA 60.153 52.632 0.00 0.00 38.69 2.69
323 324 1.891919 GTGAAGCCACTGCCGTTGA 60.892 57.895 0.00 0.00 40.10 3.18
324 325 2.639286 GTGAAGCCACTGCCGTTG 59.361 61.111 0.00 0.00 40.10 4.10
336 337 7.103641 TCCAAGGTAGCTTAACATAAGTGAAG 58.896 38.462 6.90 0.00 38.97 3.02
337 338 7.011499 TCCAAGGTAGCTTAACATAAGTGAA 57.989 36.000 6.90 0.00 0.00 3.18
338 339 6.351881 CCTCCAAGGTAGCTTAACATAAGTGA 60.352 42.308 6.90 0.00 0.00 3.41
339 340 5.817816 CCTCCAAGGTAGCTTAACATAAGTG 59.182 44.000 6.90 0.00 0.00 3.16
340 341 5.990668 CCTCCAAGGTAGCTTAACATAAGT 58.009 41.667 6.90 0.00 0.00 2.24
355 356 2.335712 GCTTTGCGGACCTCCAAGG 61.336 63.158 0.00 0.00 42.49 3.61
356 357 1.302832 AGCTTTGCGGACCTCCAAG 60.303 57.895 0.00 0.00 35.14 3.61
357 358 1.600636 CAGCTTTGCGGACCTCCAA 60.601 57.895 0.00 0.00 35.14 3.53
358 359 2.032528 CAGCTTTGCGGACCTCCA 59.967 61.111 0.00 0.00 35.14 3.86
359 360 3.435186 GCAGCTTTGCGGACCTCC 61.435 66.667 0.00 0.00 0.00 4.30
360 361 0.744414 TATGCAGCTTTGCGGACCTC 60.744 55.000 0.00 0.00 37.69 3.85
361 362 0.107017 ATATGCAGCTTTGCGGACCT 60.107 50.000 0.00 0.00 37.69 3.85
362 363 0.308993 GATATGCAGCTTTGCGGACC 59.691 55.000 0.00 0.00 37.69 4.46
363 364 1.003116 CTGATATGCAGCTTTGCGGAC 60.003 52.381 0.00 0.00 37.90 4.79
364 365 1.302366 CTGATATGCAGCTTTGCGGA 58.698 50.000 0.00 0.00 37.90 5.54
365 366 3.839654 CTGATATGCAGCTTTGCGG 57.160 52.632 0.00 0.00 37.90 5.69
374 375 1.270465 CGGCTCCATCACTGATATGCA 60.270 52.381 0.00 0.00 0.00 3.96
375 376 1.436600 CGGCTCCATCACTGATATGC 58.563 55.000 0.00 0.00 0.00 3.14
376 377 1.436600 GCGGCTCCATCACTGATATG 58.563 55.000 0.00 0.00 0.00 1.78
377 378 0.037882 CGCGGCTCCATCACTGATAT 60.038 55.000 0.00 0.00 0.00 1.63
378 379 1.363807 CGCGGCTCCATCACTGATA 59.636 57.895 0.00 0.00 0.00 2.15
379 380 2.107750 CGCGGCTCCATCACTGAT 59.892 61.111 0.00 0.00 0.00 2.90
380 381 3.356639 GACGCGGCTCCATCACTGA 62.357 63.158 12.47 0.00 0.00 3.41
381 382 2.887568 GACGCGGCTCCATCACTG 60.888 66.667 12.47 0.00 0.00 3.66
382 383 4.498520 CGACGCGGCTCCATCACT 62.499 66.667 11.76 0.00 0.00 3.41
383 384 4.492160 TCGACGCGGCTCCATCAC 62.492 66.667 11.76 0.00 0.00 3.06
384 385 4.193334 CTCGACGCGGCTCCATCA 62.193 66.667 11.76 0.00 0.00 3.07
393 394 4.148645 TCACTCGAGCTCGACGCG 62.149 66.667 33.84 25.66 44.22 6.01
394 395 2.276994 CTCACTCGAGCTCGACGC 60.277 66.667 33.84 0.00 44.22 5.19
395 396 2.031044 CTCCTCACTCGAGCTCGACG 62.031 65.000 33.84 28.30 44.22 5.12
396 397 1.711060 CCTCCTCACTCGAGCTCGAC 61.711 65.000 33.84 0.00 44.22 4.20
398 399 1.747367 ACCTCCTCACTCGAGCTCG 60.747 63.158 30.03 30.03 38.00 5.03
399 400 0.678366 TCACCTCCTCACTCGAGCTC 60.678 60.000 13.61 2.73 38.00 4.09
400 401 0.033601 ATCACCTCCTCACTCGAGCT 60.034 55.000 13.61 0.00 38.00 4.09
401 402 0.383949 GATCACCTCCTCACTCGAGC 59.616 60.000 13.61 0.00 38.00 5.03
402 403 1.028905 GGATCACCTCCTCACTCGAG 58.971 60.000 11.84 11.84 41.29 4.04
403 404 0.748367 CGGATCACCTCCTCACTCGA 60.748 60.000 0.00 0.00 42.47 4.04
404 405 1.032657 ACGGATCACCTCCTCACTCG 61.033 60.000 0.00 0.00 42.47 4.18
405 406 1.187087 AACGGATCACCTCCTCACTC 58.813 55.000 0.00 0.00 42.47 3.51
406 407 2.526888 TAACGGATCACCTCCTCACT 57.473 50.000 0.00 0.00 42.47 3.41
407 408 3.385111 AGAATAACGGATCACCTCCTCAC 59.615 47.826 0.00 0.00 42.47 3.51
408 409 3.643237 AGAATAACGGATCACCTCCTCA 58.357 45.455 0.00 0.00 42.47 3.86
409 410 4.674281 AAGAATAACGGATCACCTCCTC 57.326 45.455 0.00 0.00 42.47 3.71
410 411 5.189934 AGAAAAGAATAACGGATCACCTCCT 59.810 40.000 0.00 0.00 42.47 3.69
411 412 5.429130 AGAAAAGAATAACGGATCACCTCC 58.571 41.667 0.00 0.00 41.07 4.30
412 413 6.237861 CGAAGAAAAGAATAACGGATCACCTC 60.238 42.308 0.00 0.00 0.00 3.85
413 414 5.581085 CGAAGAAAAGAATAACGGATCACCT 59.419 40.000 0.00 0.00 0.00 4.00
414 415 5.220605 CCGAAGAAAAGAATAACGGATCACC 60.221 44.000 0.00 0.00 41.09 4.02
415 416 5.350640 ACCGAAGAAAAGAATAACGGATCAC 59.649 40.000 0.00 0.00 41.09 3.06
416 417 5.350365 CACCGAAGAAAAGAATAACGGATCA 59.650 40.000 0.00 0.00 41.09 2.92
417 418 5.220605 CCACCGAAGAAAAGAATAACGGATC 60.221 44.000 0.00 0.00 41.09 3.36
418 419 4.634443 CCACCGAAGAAAAGAATAACGGAT 59.366 41.667 0.00 0.00 41.09 4.18
419 420 3.998341 CCACCGAAGAAAAGAATAACGGA 59.002 43.478 0.00 0.00 41.09 4.69
420 421 3.425758 GCCACCGAAGAAAAGAATAACGG 60.426 47.826 0.00 0.00 43.61 4.44
421 422 3.435671 AGCCACCGAAGAAAAGAATAACG 59.564 43.478 0.00 0.00 0.00 3.18
422 423 4.723248 CAGCCACCGAAGAAAAGAATAAC 58.277 43.478 0.00 0.00 0.00 1.89
423 424 3.190535 GCAGCCACCGAAGAAAAGAATAA 59.809 43.478 0.00 0.00 0.00 1.40
424 425 2.747446 GCAGCCACCGAAGAAAAGAATA 59.253 45.455 0.00 0.00 0.00 1.75
425 426 1.541588 GCAGCCACCGAAGAAAAGAAT 59.458 47.619 0.00 0.00 0.00 2.40
426 427 0.951558 GCAGCCACCGAAGAAAAGAA 59.048 50.000 0.00 0.00 0.00 2.52
427 428 0.108585 AGCAGCCACCGAAGAAAAGA 59.891 50.000 0.00 0.00 0.00 2.52
428 429 0.239347 CAGCAGCCACCGAAGAAAAG 59.761 55.000 0.00 0.00 0.00 2.27
429 430 0.465460 ACAGCAGCCACCGAAGAAAA 60.465 50.000 0.00 0.00 0.00 2.29
430 431 1.148273 ACAGCAGCCACCGAAGAAA 59.852 52.632 0.00 0.00 0.00 2.52
431 432 1.597854 CACAGCAGCCACCGAAGAA 60.598 57.895 0.00 0.00 0.00 2.52
432 433 1.830587 ATCACAGCAGCCACCGAAGA 61.831 55.000 0.00 0.00 0.00 2.87
433 434 1.376424 ATCACAGCAGCCACCGAAG 60.376 57.895 0.00 0.00 0.00 3.79
434 435 1.672030 CATCACAGCAGCCACCGAA 60.672 57.895 0.00 0.00 0.00 4.30
435 436 2.046988 CATCACAGCAGCCACCGA 60.047 61.111 0.00 0.00 0.00 4.69
436 437 3.129502 CCATCACAGCAGCCACCG 61.130 66.667 0.00 0.00 0.00 4.94
437 438 2.034687 ACCATCACAGCAGCCACC 59.965 61.111 0.00 0.00 0.00 4.61
438 439 2.986306 GCACCATCACAGCAGCCAC 61.986 63.158 0.00 0.00 0.00 5.01
439 440 2.674033 GCACCATCACAGCAGCCA 60.674 61.111 0.00 0.00 0.00 4.75
440 441 2.360852 AGCACCATCACAGCAGCC 60.361 61.111 0.00 0.00 0.00 4.85
441 442 2.697761 CCAGCACCATCACAGCAGC 61.698 63.158 0.00 0.00 0.00 5.25
442 443 1.002990 TCCAGCACCATCACAGCAG 60.003 57.895 0.00 0.00 0.00 4.24
443 444 1.002990 CTCCAGCACCATCACAGCA 60.003 57.895 0.00 0.00 0.00 4.41
444 445 1.748122 CCTCCAGCACCATCACAGC 60.748 63.158 0.00 0.00 0.00 4.40
445 446 1.748122 GCCTCCAGCACCATCACAG 60.748 63.158 0.00 0.00 42.97 3.66
446 447 2.352422 GCCTCCAGCACCATCACA 59.648 61.111 0.00 0.00 42.97 3.58
455 456 4.767255 CCGTCACCTGCCTCCAGC 62.767 72.222 0.00 0.00 44.14 4.85
456 457 2.997315 TCCGTCACCTGCCTCCAG 60.997 66.667 0.00 0.00 38.85 3.86
457 458 3.311110 GTCCGTCACCTGCCTCCA 61.311 66.667 0.00 0.00 0.00 3.86
458 459 4.436998 CGTCCGTCACCTGCCTCC 62.437 72.222 0.00 0.00 0.00 4.30
459 460 3.222354 AACGTCCGTCACCTGCCTC 62.222 63.158 0.00 0.00 0.00 4.70
460 461 3.231736 AACGTCCGTCACCTGCCT 61.232 61.111 0.00 0.00 0.00 4.75
461 462 3.041940 CAACGTCCGTCACCTGCC 61.042 66.667 0.00 0.00 0.00 4.85
462 463 3.041940 CCAACGTCCGTCACCTGC 61.042 66.667 0.00 0.00 0.00 4.85
463 464 1.954146 CACCAACGTCCGTCACCTG 60.954 63.158 0.00 0.00 0.00 4.00
464 465 2.359570 GACACCAACGTCCGTCACCT 62.360 60.000 0.00 0.00 0.00 4.00
465 466 1.952635 GACACCAACGTCCGTCACC 60.953 63.158 0.00 0.00 0.00 4.02
466 467 0.806884 TTGACACCAACGTCCGTCAC 60.807 55.000 8.31 0.00 38.07 3.67
467 468 0.528901 CTTGACACCAACGTCCGTCA 60.529 55.000 0.00 0.00 36.63 4.35
468 469 1.828331 GCTTGACACCAACGTCCGTC 61.828 60.000 0.00 0.00 34.88 4.79
469 470 1.885850 GCTTGACACCAACGTCCGT 60.886 57.895 0.00 0.00 34.88 4.69
470 471 1.557443 GAGCTTGACACCAACGTCCG 61.557 60.000 0.00 0.00 34.88 4.79
471 472 0.531974 TGAGCTTGACACCAACGTCC 60.532 55.000 0.00 0.00 34.88 4.79
472 473 0.861837 CTGAGCTTGACACCAACGTC 59.138 55.000 0.00 0.00 36.40 4.34
473 474 0.464036 TCTGAGCTTGACACCAACGT 59.536 50.000 0.00 0.00 0.00 3.99
474 475 1.143305 CTCTGAGCTTGACACCAACG 58.857 55.000 0.00 0.00 0.00 4.10
475 476 2.533266 TCTCTGAGCTTGACACCAAC 57.467 50.000 0.00 0.00 0.00 3.77
476 477 2.369860 ACATCTCTGAGCTTGACACCAA 59.630 45.455 12.47 0.00 0.00 3.67
477 478 1.973515 ACATCTCTGAGCTTGACACCA 59.026 47.619 12.47 0.00 0.00 4.17
478 479 2.758736 ACATCTCTGAGCTTGACACC 57.241 50.000 12.47 0.00 0.00 4.16
479 480 3.924144 AGAACATCTCTGAGCTTGACAC 58.076 45.455 12.47 5.44 31.12 3.67
480 481 4.769488 AGTAGAACATCTCTGAGCTTGACA 59.231 41.667 12.47 0.00 35.41 3.58
481 482 5.323371 AGTAGAACATCTCTGAGCTTGAC 57.677 43.478 12.47 7.43 35.41 3.18
482 483 7.059788 AGATAGTAGAACATCTCTGAGCTTGA 58.940 38.462 12.47 0.00 35.41 3.02
483 484 7.275888 AGATAGTAGAACATCTCTGAGCTTG 57.724 40.000 0.00 3.05 35.41 4.01
484 485 7.896383 AAGATAGTAGAACATCTCTGAGCTT 57.104 36.000 0.00 0.00 35.41 3.74
485 486 7.896383 AAAGATAGTAGAACATCTCTGAGCT 57.104 36.000 0.00 0.00 35.41 4.09
486 487 8.194104 TGAAAAGATAGTAGAACATCTCTGAGC 58.806 37.037 0.00 0.00 35.41 4.26
487 488 9.734620 CTGAAAAGATAGTAGAACATCTCTGAG 57.265 37.037 0.00 0.00 35.41 3.35
488 489 9.249053 ACTGAAAAGATAGTAGAACATCTCTGA 57.751 33.333 0.00 0.00 35.41 3.27
489 490 9.868277 AACTGAAAAGATAGTAGAACATCTCTG 57.132 33.333 0.00 0.00 35.41 3.35
495 496 9.607988 TGACAAAACTGAAAAGATAGTAGAACA 57.392 29.630 0.00 0.00 0.00 3.18
498 499 9.778741 ACATGACAAAACTGAAAAGATAGTAGA 57.221 29.630 0.00 0.00 0.00 2.59
500 501 8.708742 CGACATGACAAAACTGAAAAGATAGTA 58.291 33.333 0.00 0.00 0.00 1.82
501 502 7.307989 CCGACATGACAAAACTGAAAAGATAGT 60.308 37.037 0.00 0.00 0.00 2.12
502 503 7.017645 CCGACATGACAAAACTGAAAAGATAG 58.982 38.462 0.00 0.00 0.00 2.08
503 504 6.485313 ACCGACATGACAAAACTGAAAAGATA 59.515 34.615 0.00 0.00 0.00 1.98
504 505 5.299279 ACCGACATGACAAAACTGAAAAGAT 59.701 36.000 0.00 0.00 0.00 2.40
505 506 4.638421 ACCGACATGACAAAACTGAAAAGA 59.362 37.500 0.00 0.00 0.00 2.52
506 507 4.920376 ACCGACATGACAAAACTGAAAAG 58.080 39.130 0.00 0.00 0.00 2.27
507 508 4.201970 GGACCGACATGACAAAACTGAAAA 60.202 41.667 0.00 0.00 0.00 2.29
508 509 3.314080 GGACCGACATGACAAAACTGAAA 59.686 43.478 0.00 0.00 0.00 2.69
509 510 2.875933 GGACCGACATGACAAAACTGAA 59.124 45.455 0.00 0.00 0.00 3.02
510 511 2.104111 AGGACCGACATGACAAAACTGA 59.896 45.455 0.00 0.00 0.00 3.41
511 512 2.494059 AGGACCGACATGACAAAACTG 58.506 47.619 0.00 0.00 0.00 3.16
512 513 2.930826 AGGACCGACATGACAAAACT 57.069 45.000 0.00 0.00 0.00 2.66
513 514 3.810941 TGTAAGGACCGACATGACAAAAC 59.189 43.478 0.00 0.00 0.00 2.43
514 515 4.074627 TGTAAGGACCGACATGACAAAA 57.925 40.909 0.00 0.00 0.00 2.44
515 516 3.755112 TGTAAGGACCGACATGACAAA 57.245 42.857 0.00 0.00 0.00 2.83
516 517 3.973206 ATGTAAGGACCGACATGACAA 57.027 42.857 12.72 0.00 34.98 3.18
528 529 8.514330 AACAAAGTACAAAAGTCATGTAAGGA 57.486 30.769 0.00 0.00 35.21 3.36
529 530 9.581099 AAAACAAAGTACAAAAGTCATGTAAGG 57.419 29.630 0.00 0.00 35.21 2.69
600 601 8.650714 GCAAATTTTTCTTGATAGCTTACCAAG 58.349 33.333 13.15 13.15 38.79 3.61
601 602 8.147058 TGCAAATTTTTCTTGATAGCTTACCAA 58.853 29.630 0.00 0.00 0.00 3.67
602 603 7.665690 TGCAAATTTTTCTTGATAGCTTACCA 58.334 30.769 0.00 0.00 0.00 3.25
603 604 8.532977 TTGCAAATTTTTCTTGATAGCTTACC 57.467 30.769 0.00 0.00 0.00 2.85
605 606 9.926158 TGATTGCAAATTTTTCTTGATAGCTTA 57.074 25.926 1.71 0.00 0.00 3.09
606 607 8.836268 TGATTGCAAATTTTTCTTGATAGCTT 57.164 26.923 1.71 0.00 0.00 3.74
607 608 8.836268 TTGATTGCAAATTTTTCTTGATAGCT 57.164 26.923 1.71 0.00 0.00 3.32
608 609 8.173130 CCTTGATTGCAAATTTTTCTTGATAGC 58.827 33.333 1.71 0.00 32.73 2.97
609 610 9.426837 TCCTTGATTGCAAATTTTTCTTGATAG 57.573 29.630 1.71 0.00 32.73 2.08
610 611 9.775854 TTCCTTGATTGCAAATTTTTCTTGATA 57.224 25.926 1.71 0.00 32.73 2.15
611 612 8.680039 TTCCTTGATTGCAAATTTTTCTTGAT 57.320 26.923 1.71 0.00 32.73 2.57
612 613 8.503458 TTTCCTTGATTGCAAATTTTTCTTGA 57.497 26.923 1.71 0.00 32.73 3.02
613 614 8.614346 TCTTTCCTTGATTGCAAATTTTTCTTG 58.386 29.630 1.71 0.00 32.73 3.02
614 615 8.615211 GTCTTTCCTTGATTGCAAATTTTTCTT 58.385 29.630 1.71 0.00 32.73 2.52
615 616 7.769970 TGTCTTTCCTTGATTGCAAATTTTTCT 59.230 29.630 1.71 0.00 32.73 2.52
616 617 7.918643 TGTCTTTCCTTGATTGCAAATTTTTC 58.081 30.769 1.71 0.00 32.73 2.29
617 618 7.862512 TGTCTTTCCTTGATTGCAAATTTTT 57.137 28.000 1.71 0.00 32.73 1.94
618 619 9.211485 CTATGTCTTTCCTTGATTGCAAATTTT 57.789 29.630 1.71 0.00 32.73 1.82
619 620 7.820872 CCTATGTCTTTCCTTGATTGCAAATTT 59.179 33.333 1.71 0.00 32.73 1.82
620 621 7.325694 CCTATGTCTTTCCTTGATTGCAAATT 58.674 34.615 1.71 0.00 32.73 1.82
621 622 6.628844 GCCTATGTCTTTCCTTGATTGCAAAT 60.629 38.462 1.71 0.00 32.73 2.32
622 623 5.336690 GCCTATGTCTTTCCTTGATTGCAAA 60.337 40.000 1.71 0.00 32.73 3.68
623 624 4.158394 GCCTATGTCTTTCCTTGATTGCAA 59.842 41.667 0.00 0.00 0.00 4.08
624 625 3.696051 GCCTATGTCTTTCCTTGATTGCA 59.304 43.478 0.00 0.00 0.00 4.08
625 626 3.950395 AGCCTATGTCTTTCCTTGATTGC 59.050 43.478 0.00 0.00 0.00 3.56
626 627 4.578105 GGAGCCTATGTCTTTCCTTGATTG 59.422 45.833 0.00 0.00 0.00 2.67
627 628 4.385754 GGGAGCCTATGTCTTTCCTTGATT 60.386 45.833 0.00 0.00 0.00 2.57
628 629 3.137360 GGGAGCCTATGTCTTTCCTTGAT 59.863 47.826 0.00 0.00 0.00 2.57
629 630 2.505819 GGGAGCCTATGTCTTTCCTTGA 59.494 50.000 0.00 0.00 0.00 3.02
630 631 2.507471 AGGGAGCCTATGTCTTTCCTTG 59.493 50.000 0.00 0.00 28.47 3.61
631 632 2.852130 AGGGAGCCTATGTCTTTCCTT 58.148 47.619 0.00 0.00 28.47 3.36
632 633 2.577772 AGGGAGCCTATGTCTTTCCT 57.422 50.000 0.00 0.00 28.47 3.36
633 634 3.653835 AAAGGGAGCCTATGTCTTTCC 57.346 47.619 0.00 0.00 31.13 3.13
664 665 7.671398 ACACACATGGGAGAATATCTTTCTTTT 59.329 33.333 0.00 0.00 0.00 2.27
931 999 3.531538 GTGTGTTGTCTTCCTCACTTGA 58.468 45.455 0.00 0.00 0.00 3.02
1105 1284 2.370445 CGTCCTTCAGGGGCTGGAT 61.370 63.158 0.00 0.00 37.61 3.41
1364 1574 2.433838 CGGTCTGCTGCTGGTCAG 60.434 66.667 6.69 0.00 45.62 3.51
1608 1881 9.678260 ATTGTATCTCCATCTTATTATTCTGCC 57.322 33.333 0.00 0.00 0.00 4.85
1696 1969 6.238648 CGTACAAGAAACCCAAATTCAAGTCT 60.239 38.462 0.00 0.00 0.00 3.24
1731 2006 6.662414 TTTTGGACGATGCTGTAGAAATAG 57.338 37.500 0.00 0.00 0.00 1.73
1733 2008 7.807977 ATATTTTGGACGATGCTGTAGAAAT 57.192 32.000 0.00 0.00 0.00 2.17
1764 2039 7.067981 GGTCTTTCATAGATTCTGGAAGCAATT 59.932 37.037 0.00 0.00 34.79 2.32
1831 2106 9.083080 GGCATGTATGTAACTTCCAAATTTAAC 57.917 33.333 0.00 0.00 0.00 2.01
1844 2119 9.073368 CATATTCTACGTAGGCATGTATGTAAC 57.927 37.037 22.01 0.00 0.00 2.50
1856 2131 6.401047 TTTGGTCCTCATATTCTACGTAGG 57.599 41.667 22.01 6.58 0.00 3.18
1890 2165 0.035176 GGCTTGCCATGGAAAAGCAA 59.965 50.000 34.95 22.99 46.46 3.91
1897 2172 4.738998 CCCACGGCTTGCCATGGA 62.739 66.667 25.96 0.00 33.80 3.41
1969 2244 2.086869 CACAGGCACCCTTCACTTATG 58.913 52.381 0.00 0.00 0.00 1.90
2035 2311 8.664211 TTTATTTATTTTCCCACGCACTTTTT 57.336 26.923 0.00 0.00 0.00 1.94
2063 2339 3.070015 CAGGTTTGCTCCCAATTTTCAGT 59.930 43.478 0.00 0.00 0.00 3.41
2064 2340 3.555586 CCAGGTTTGCTCCCAATTTTCAG 60.556 47.826 0.00 0.00 0.00 3.02
2065 2341 2.368221 CCAGGTTTGCTCCCAATTTTCA 59.632 45.455 0.00 0.00 0.00 2.69
2066 2342 2.368548 ACCAGGTTTGCTCCCAATTTTC 59.631 45.455 0.00 0.00 0.00 2.29
2070 2346 0.542702 CCACCAGGTTTGCTCCCAAT 60.543 55.000 0.00 0.00 0.00 3.16
2071 2347 1.152567 CCACCAGGTTTGCTCCCAA 60.153 57.895 0.00 0.00 0.00 4.12
2102 2378 6.208599 TCATTTCTTCACCTAAATTCACCCAC 59.791 38.462 0.00 0.00 0.00 4.61
2111 2387 5.122239 CGCAGATGTCATTTCTTCACCTAAA 59.878 40.000 0.00 0.00 0.00 1.85
2114 2390 3.005554 CGCAGATGTCATTTCTTCACCT 58.994 45.455 0.00 0.00 0.00 4.00
2115 2391 3.002791 TCGCAGATGTCATTTCTTCACC 58.997 45.455 0.00 0.00 0.00 4.02
2204 2480 6.747280 CCCACGATTCATTCAAACAGTTATTC 59.253 38.462 0.00 0.00 0.00 1.75
2259 2535 9.620660 GAAGTTTTGTGAATAAATAACATCCGT 57.379 29.630 0.00 0.00 0.00 4.69
2272 2548 4.096382 ACTCACTTGCGAAGTTTTGTGAAT 59.904 37.500 0.00 0.00 40.46 2.57
2350 2686 9.693739 TGCATATCAAAAGGAAAATACTAGGAA 57.306 29.630 0.00 0.00 0.00 3.36
2411 2747 4.058817 GGATTTGTCAAGTCCGGCTATAG 58.941 47.826 11.01 0.00 0.00 1.31
2432 2768 3.053896 GGGCGTTTGAGGGTTCGG 61.054 66.667 0.00 0.00 0.00 4.30
2476 2812 2.665185 GGTGTGACCGGTCAGTGC 60.665 66.667 37.04 26.56 40.75 4.40
2502 2838 1.202604 GGTGTTCGGTTGTGAGAAGGA 60.203 52.381 0.00 0.00 0.00 3.36
2503 2839 1.202651 AGGTGTTCGGTTGTGAGAAGG 60.203 52.381 0.00 0.00 0.00 3.46
2504 2840 2.135933 GAGGTGTTCGGTTGTGAGAAG 58.864 52.381 0.00 0.00 0.00 2.85
2513 2849 2.851263 TGCTAAATGAGGTGTTCGGT 57.149 45.000 0.00 0.00 0.00 4.69
2528 2864 9.725019 CACTTTATATGGATTTGAGGTATGCTA 57.275 33.333 0.00 0.00 0.00 3.49
2529 2865 8.439971 TCACTTTATATGGATTTGAGGTATGCT 58.560 33.333 0.00 0.00 0.00 3.79
2530 2866 8.621532 TCACTTTATATGGATTTGAGGTATGC 57.378 34.615 0.00 0.00 0.00 3.14
2536 2872 8.627403 AGTTGCATCACTTTATATGGATTTGAG 58.373 33.333 0.00 0.00 0.00 3.02
2537 2873 8.523915 AGTTGCATCACTTTATATGGATTTGA 57.476 30.769 0.00 0.00 0.00 2.69
2538 2874 9.669353 GTAGTTGCATCACTTTATATGGATTTG 57.331 33.333 0.00 0.00 0.00 2.32
2539 2875 8.559536 CGTAGTTGCATCACTTTATATGGATTT 58.440 33.333 0.00 0.00 0.00 2.17
2540 2876 7.715249 ACGTAGTTGCATCACTTTATATGGATT 59.285 33.333 0.00 0.00 37.78 3.01
2541 2877 7.217200 ACGTAGTTGCATCACTTTATATGGAT 58.783 34.615 0.00 0.00 37.78 3.41
2542 2878 6.578944 ACGTAGTTGCATCACTTTATATGGA 58.421 36.000 0.00 0.00 37.78 3.41
2543 2879 6.844696 ACGTAGTTGCATCACTTTATATGG 57.155 37.500 0.00 0.00 37.78 2.74
2546 2882 9.205719 TGTTTTACGTAGTTGCATCACTTTATA 57.794 29.630 0.00 0.00 37.78 0.98
2547 2883 8.090250 TGTTTTACGTAGTTGCATCACTTTAT 57.910 30.769 0.00 0.00 37.78 1.40
2548 2884 7.479897 TGTTTTACGTAGTTGCATCACTTTA 57.520 32.000 0.00 0.00 37.78 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.