Multiple sequence alignment - TraesCS6D01G332600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G332600 chr6D 100.000 2399 0 0 1 2399 435011321 435013719 0.000000e+00 4431
1 TraesCS6D01G332600 chr6D 94.224 883 16 7 1538 2399 19121299 19122167 0.000000e+00 1315
2 TraesCS6D01G332600 chr6D 95.140 823 21 7 1582 2399 427082856 427083664 0.000000e+00 1280
3 TraesCS6D01G332600 chr6D 83.385 650 76 20 558 1192 434811154 434811786 7.440000e-160 573
4 TraesCS6D01G332600 chr6D 79.680 812 102 36 551 1351 435072404 435073163 5.870000e-146 527
5 TraesCS6D01G332600 chr6D 84.615 338 29 10 1179 1500 434812547 434812877 4.980000e-82 315
6 TraesCS6D01G332600 chr6D 82.808 349 41 8 1082 1418 435075349 435075690 6.490000e-76 294
7 TraesCS6D01G332600 chr6D 90.090 111 11 0 1094 1204 434812402 434812512 6.910000e-31 145
8 TraesCS6D01G332600 chr2D 96.984 862 24 2 1538 2399 11055381 11054522 0.000000e+00 1447
9 TraesCS6D01G332600 chr2D 96.647 865 25 3 1538 2399 7875672 7874809 0.000000e+00 1434
10 TraesCS6D01G332600 chr2D 94.569 847 19 10 1556 2399 628986388 628987210 0.000000e+00 1284
11 TraesCS6D01G332600 chr2D 97.429 739 14 4 1662 2399 37366436 37365702 0.000000e+00 1254
12 TraesCS6D01G332600 chr5D 96.785 871 18 4 1538 2399 508999110 508998241 0.000000e+00 1445
13 TraesCS6D01G332600 chr5D 94.558 882 17 3 1538 2399 26511376 26510506 0.000000e+00 1334
14 TraesCS6D01G332600 chr7D 95.578 882 19 4 1538 2399 606525621 606526502 0.000000e+00 1395
15 TraesCS6D01G332600 chr7D 95.267 824 21 5 1581 2399 13948527 13949337 0.000000e+00 1290
16 TraesCS6D01G332600 chr7D 94.872 819 24 2 1582 2399 40038021 40037220 0.000000e+00 1264
17 TraesCS6D01G332600 chr7D 97.158 739 19 2 1661 2399 283977900 283977164 0.000000e+00 1247
18 TraesCS6D01G332600 chr7D 93.916 641 19 3 1538 2158 16014192 16014832 0.000000e+00 950
19 TraesCS6D01G332600 chr1D 94.270 890 22 9 1538 2399 7198491 7199379 0.000000e+00 1334
20 TraesCS6D01G332600 chr1D 97.531 729 17 1 1671 2399 16537525 16536798 0.000000e+00 1245
21 TraesCS6D01G332600 chr3D 91.677 805 20 10 1538 2332 19280769 19280002 0.000000e+00 1072
22 TraesCS6D01G332600 chr6A 91.272 802 45 15 617 1409 581982470 581983255 0.000000e+00 1070
23 TraesCS6D01G332600 chr6A 93.562 699 30 6 805 1500 582086244 582086930 0.000000e+00 1027
24 TraesCS6D01G332600 chr6A 78.687 929 106 52 479 1351 582091457 582092349 3.510000e-148 534
25 TraesCS6D01G332600 chr6A 84.149 429 42 11 1098 1514 582095872 582096286 2.240000e-105 392
26 TraesCS6D01G332600 chr6A 84.887 311 30 5 1179 1479 581983389 581983692 5.010000e-77 298
27 TraesCS6D01G332600 chr6A 84.516 310 23 16 647 950 582089987 582090277 1.400000e-72 283
28 TraesCS6D01G332600 chr6B 89.973 728 35 10 805 1516 658194362 658195067 0.000000e+00 905
29 TraesCS6D01G332600 chr6B 83.358 667 80 25 551 1204 658233511 658234159 2.660000e-164 588
30 TraesCS6D01G332600 chr6B 86.861 411 48 4 784 1192 658176859 658177265 2.810000e-124 455
31 TraesCS6D01G332600 chr6B 85.522 297 26 7 1190 1476 658178559 658178848 6.490000e-76 294
32 TraesCS6D01G332600 chr6B 80.667 150 14 10 148 287 658233547 658233691 4.220000e-18 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G332600 chr6D 435011321 435013719 2398 False 4431.000000 4431 100.0000 1 2399 1 chr6D.!!$F3 2398
1 TraesCS6D01G332600 chr6D 19121299 19122167 868 False 1315.000000 1315 94.2240 1538 2399 1 chr6D.!!$F1 861
2 TraesCS6D01G332600 chr6D 427082856 427083664 808 False 1280.000000 1280 95.1400 1582 2399 1 chr6D.!!$F2 817
3 TraesCS6D01G332600 chr6D 435072404 435075690 3286 False 410.500000 527 81.2440 551 1418 2 chr6D.!!$F5 867
4 TraesCS6D01G332600 chr6D 434811154 434812877 1723 False 344.333333 573 86.0300 558 1500 3 chr6D.!!$F4 942
5 TraesCS6D01G332600 chr2D 11054522 11055381 859 True 1447.000000 1447 96.9840 1538 2399 1 chr2D.!!$R2 861
6 TraesCS6D01G332600 chr2D 7874809 7875672 863 True 1434.000000 1434 96.6470 1538 2399 1 chr2D.!!$R1 861
7 TraesCS6D01G332600 chr2D 628986388 628987210 822 False 1284.000000 1284 94.5690 1556 2399 1 chr2D.!!$F1 843
8 TraesCS6D01G332600 chr2D 37365702 37366436 734 True 1254.000000 1254 97.4290 1662 2399 1 chr2D.!!$R3 737
9 TraesCS6D01G332600 chr5D 508998241 508999110 869 True 1445.000000 1445 96.7850 1538 2399 1 chr5D.!!$R2 861
10 TraesCS6D01G332600 chr5D 26510506 26511376 870 True 1334.000000 1334 94.5580 1538 2399 1 chr5D.!!$R1 861
11 TraesCS6D01G332600 chr7D 606525621 606526502 881 False 1395.000000 1395 95.5780 1538 2399 1 chr7D.!!$F3 861
12 TraesCS6D01G332600 chr7D 13948527 13949337 810 False 1290.000000 1290 95.2670 1581 2399 1 chr7D.!!$F1 818
13 TraesCS6D01G332600 chr7D 40037220 40038021 801 True 1264.000000 1264 94.8720 1582 2399 1 chr7D.!!$R1 817
14 TraesCS6D01G332600 chr7D 283977164 283977900 736 True 1247.000000 1247 97.1580 1661 2399 1 chr7D.!!$R2 738
15 TraesCS6D01G332600 chr7D 16014192 16014832 640 False 950.000000 950 93.9160 1538 2158 1 chr7D.!!$F2 620
16 TraesCS6D01G332600 chr1D 7198491 7199379 888 False 1334.000000 1334 94.2700 1538 2399 1 chr1D.!!$F1 861
17 TraesCS6D01G332600 chr1D 16536798 16537525 727 True 1245.000000 1245 97.5310 1671 2399 1 chr1D.!!$R1 728
18 TraesCS6D01G332600 chr3D 19280002 19280769 767 True 1072.000000 1072 91.6770 1538 2332 1 chr3D.!!$R1 794
19 TraesCS6D01G332600 chr6A 581982470 581983692 1222 False 684.000000 1070 88.0795 617 1479 2 chr6A.!!$F1 862
20 TraesCS6D01G332600 chr6A 582086244 582096286 10042 False 559.000000 1027 85.2285 479 1514 4 chr6A.!!$F2 1035
21 TraesCS6D01G332600 chr6B 658194362 658195067 705 False 905.000000 905 89.9730 805 1516 1 chr6B.!!$F1 711
22 TraesCS6D01G332600 chr6B 658176859 658178848 1989 False 374.500000 455 86.1915 784 1476 2 chr6B.!!$F2 692
23 TraesCS6D01G332600 chr6B 658233511 658234159 648 False 345.000000 588 82.0125 148 1204 2 chr6B.!!$F3 1056

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 5797 0.171903 CATGCTGCACCTGCTTTACC 59.828 55.0 3.57 0.0 42.66 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 11937 3.297134 ACTGTGGTCAAACAATGGTCT 57.703 42.857 0.0 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.808598 GTCTGGACCATCTAGCGGA 58.191 57.895 0.00 0.00 0.00 5.54
19 20 0.386113 GTCTGGACCATCTAGCGGAC 59.614 60.000 0.00 0.00 0.00 4.79
20 21 0.755698 TCTGGACCATCTAGCGGACC 60.756 60.000 11.01 11.01 38.65 4.46
24 25 1.968493 GGACCATCTAGCGGACCAATA 59.032 52.381 12.44 0.00 38.14 1.90
25 26 2.567615 GGACCATCTAGCGGACCAATAT 59.432 50.000 12.44 0.00 38.14 1.28
35 36 2.521105 GGACCAATATAAGTCCGCGT 57.479 50.000 4.92 0.00 42.98 6.01
36 37 2.830104 GGACCAATATAAGTCCGCGTT 58.170 47.619 4.92 0.00 42.98 4.84
38 39 2.542595 GACCAATATAAGTCCGCGTTGG 59.457 50.000 16.50 16.50 41.33 3.77
46 47 4.590487 TCCGCGTTGGATGACTTC 57.410 55.556 4.92 0.00 43.74 3.01
58 59 3.737850 GGATGACTTCCATGATCCAGAC 58.262 50.000 0.00 0.00 44.74 3.51
59 60 3.135348 GGATGACTTCCATGATCCAGACA 59.865 47.826 0.00 0.00 44.74 3.41
60 61 4.202440 GGATGACTTCCATGATCCAGACAT 60.202 45.833 0.00 0.00 44.74 3.06
63 64 5.861727 TGACTTCCATGATCCAGACATATG 58.138 41.667 0.00 0.00 0.00 1.78
64 65 4.649692 ACTTCCATGATCCAGACATATGC 58.350 43.478 1.58 0.00 0.00 3.14
67 68 2.740447 CCATGATCCAGACATATGCGTG 59.260 50.000 1.58 0.03 0.00 5.34
68 69 3.555586 CCATGATCCAGACATATGCGTGA 60.556 47.826 1.58 0.00 0.00 4.35
69 70 4.251268 CATGATCCAGACATATGCGTGAT 58.749 43.478 1.58 0.09 0.00 3.06
70 71 3.656559 TGATCCAGACATATGCGTGATG 58.343 45.455 1.58 0.00 0.00 3.07
71 72 3.070015 TGATCCAGACATATGCGTGATGT 59.930 43.478 1.58 0.00 40.25 3.06
73 74 3.872696 TCCAGACATATGCGTGATGTTT 58.127 40.909 1.58 0.00 37.65 2.83
74 75 3.622612 TCCAGACATATGCGTGATGTTTG 59.377 43.478 1.58 8.26 37.65 2.93
76 77 2.030823 AGACATATGCGTGATGTTTGCG 59.969 45.455 1.58 0.00 37.65 4.85
77 78 1.063912 ACATATGCGTGATGTTTGCGG 59.936 47.619 1.58 0.00 33.70 5.69
78 79 0.662619 ATATGCGTGATGTTTGCGGG 59.337 50.000 0.00 0.00 0.00 6.13
79 80 0.675208 TATGCGTGATGTTTGCGGGT 60.675 50.000 0.00 0.00 0.00 5.28
81 82 2.474266 CGTGATGTTTGCGGGTCG 59.526 61.111 0.00 0.00 0.00 4.79
82 83 2.867472 GTGATGTTTGCGGGTCGG 59.133 61.111 0.00 0.00 0.00 4.79
83 84 2.359354 TGATGTTTGCGGGTCGGG 60.359 61.111 0.00 0.00 0.00 5.14
84 85 3.131478 GATGTTTGCGGGTCGGGG 61.131 66.667 0.00 0.00 0.00 5.73
85 86 3.615509 GATGTTTGCGGGTCGGGGA 62.616 63.158 0.00 0.00 0.00 4.81
87 88 3.131478 GTTTGCGGGTCGGGGATG 61.131 66.667 0.00 0.00 0.00 3.51
93 94 2.770904 GGGTCGGGGATGCCCTAA 60.771 66.667 21.44 5.35 44.66 2.69
95 96 1.153025 GGTCGGGGATGCCCTAAAC 60.153 63.158 21.44 14.80 44.66 2.01
96 97 1.605453 GTCGGGGATGCCCTAAACA 59.395 57.895 21.44 0.00 44.66 2.83
97 98 0.182775 GTCGGGGATGCCCTAAACAT 59.817 55.000 21.44 0.00 44.66 2.71
98 99 0.923358 TCGGGGATGCCCTAAACATT 59.077 50.000 21.44 0.00 44.66 2.71
99 100 1.286553 TCGGGGATGCCCTAAACATTT 59.713 47.619 21.44 0.00 44.66 2.32
102 103 3.103742 GGGGATGCCCTAAACATTTCAA 58.896 45.455 16.52 0.00 44.66 2.69
104 105 4.898861 GGGGATGCCCTAAACATTTCAATA 59.101 41.667 16.52 0.00 44.66 1.90
105 106 5.221441 GGGGATGCCCTAAACATTTCAATAC 60.221 44.000 16.52 0.00 44.66 1.89
107 108 5.362430 GGATGCCCTAAACATTTCAATACCA 59.638 40.000 0.00 0.00 0.00 3.25
110 111 5.954752 TGCCCTAAACATTTCAATACCATGA 59.045 36.000 0.00 0.00 0.00 3.07
111 112 6.438741 TGCCCTAAACATTTCAATACCATGAA 59.561 34.615 0.00 0.00 37.53 2.57
112 113 7.125507 TGCCCTAAACATTTCAATACCATGAAT 59.874 33.333 0.00 0.00 38.98 2.57
113 114 7.653311 GCCCTAAACATTTCAATACCATGAATC 59.347 37.037 0.00 0.00 38.98 2.52
114 115 8.694540 CCCTAAACATTTCAATACCATGAATCA 58.305 33.333 0.00 0.00 38.98 2.57
118 119 9.775854 AAACATTTCAATACCATGAATCAAACA 57.224 25.926 0.00 0.00 38.98 2.83
119 120 8.991243 ACATTTCAATACCATGAATCAAACAG 57.009 30.769 0.00 0.00 38.98 3.16
121 122 5.581126 TCAATACCATGAATCAAACAGCC 57.419 39.130 0.00 0.00 0.00 4.85
122 123 5.015515 TCAATACCATGAATCAAACAGCCA 58.984 37.500 0.00 0.00 0.00 4.75
123 124 5.479724 TCAATACCATGAATCAAACAGCCAA 59.520 36.000 0.00 0.00 0.00 4.52
124 125 3.665745 ACCATGAATCAAACAGCCAAC 57.334 42.857 0.00 0.00 0.00 3.77
125 126 2.964464 ACCATGAATCAAACAGCCAACA 59.036 40.909 0.00 0.00 0.00 3.33
126 127 3.579586 ACCATGAATCAAACAGCCAACAT 59.420 39.130 0.00 0.00 0.00 2.71
127 128 4.771577 ACCATGAATCAAACAGCCAACATA 59.228 37.500 0.00 0.00 0.00 2.29
128 129 5.105635 ACCATGAATCAAACAGCCAACATAG 60.106 40.000 0.00 0.00 0.00 2.23
130 131 6.350361 CCATGAATCAAACAGCCAACATAGAA 60.350 38.462 0.00 0.00 0.00 2.10
131 132 6.839124 TGAATCAAACAGCCAACATAGAAT 57.161 33.333 0.00 0.00 0.00 2.40
132 133 6.623486 TGAATCAAACAGCCAACATAGAATG 58.377 36.000 0.00 0.00 0.00 2.67
133 134 6.433716 TGAATCAAACAGCCAACATAGAATGA 59.566 34.615 0.00 0.00 0.00 2.57
135 136 6.441093 TCAAACAGCCAACATAGAATGATC 57.559 37.500 0.00 0.00 0.00 2.92
136 137 5.945191 TCAAACAGCCAACATAGAATGATCA 59.055 36.000 0.00 0.00 0.00 2.92
138 139 6.839124 AACAGCCAACATAGAATGATCAAA 57.161 33.333 0.00 0.00 0.00 2.69
140 141 5.126061 ACAGCCAACATAGAATGATCAAACC 59.874 40.000 0.00 0.00 0.00 3.27
141 142 4.646492 AGCCAACATAGAATGATCAAACCC 59.354 41.667 0.00 0.00 0.00 4.11
143 144 5.203528 CCAACATAGAATGATCAAACCCCT 58.796 41.667 0.00 0.00 0.00 4.79
145 146 6.833416 CCAACATAGAATGATCAAACCCCTTA 59.167 38.462 0.00 0.00 0.00 2.69
146 147 7.341769 CCAACATAGAATGATCAAACCCCTTAA 59.658 37.037 0.00 0.00 0.00 1.85
147 148 7.881775 ACATAGAATGATCAAACCCCTTAAC 57.118 36.000 0.00 0.00 0.00 2.01
149 150 5.536497 AGAATGATCAAACCCCTTAACCT 57.464 39.130 0.00 0.00 0.00 3.50
150 151 5.903923 AGAATGATCAAACCCCTTAACCTT 58.096 37.500 0.00 0.00 0.00 3.50
153 154 5.068215 TGATCAAACCCCTTAACCTTTCA 57.932 39.130 0.00 0.00 0.00 2.69
161 162 5.201243 ACCCCTTAACCTTTCATATGCTTC 58.799 41.667 0.00 0.00 0.00 3.86
167 168 7.042658 CCTTAACCTTTCATATGCTTCGTCTAC 60.043 40.741 0.00 0.00 0.00 2.59
172 173 7.147880 ACCTTTCATATGCTTCGTCTACTTACT 60.148 37.037 0.00 0.00 0.00 2.24
214 215 5.881637 GACACTTTCGATCTGCTATCTTC 57.118 43.478 0.00 0.00 0.00 2.87
217 218 6.734137 ACACTTTCGATCTGCTATCTTCTAG 58.266 40.000 0.00 0.00 0.00 2.43
218 219 6.320164 ACACTTTCGATCTGCTATCTTCTAGT 59.680 38.462 0.00 0.00 0.00 2.57
219 220 7.499563 ACACTTTCGATCTGCTATCTTCTAGTA 59.500 37.037 0.00 0.00 0.00 1.82
221 222 8.564574 ACTTTCGATCTGCTATCTTCTAGTAAG 58.435 37.037 0.00 0.00 0.00 2.34
222 223 6.489127 TCGATCTGCTATCTTCTAGTAAGC 57.511 41.667 0.00 0.00 0.00 3.09
224 225 6.486993 TCGATCTGCTATCTTCTAGTAAGCAA 59.513 38.462 0.00 0.00 42.21 3.91
227 228 9.567848 GATCTGCTATCTTCTAGTAAGCAATAC 57.432 37.037 0.00 0.00 42.21 1.89
228 229 7.887381 TCTGCTATCTTCTAGTAAGCAATACC 58.113 38.462 0.00 0.00 42.21 2.73
229 230 7.726291 TCTGCTATCTTCTAGTAAGCAATACCT 59.274 37.037 0.00 0.00 42.21 3.08
230 231 8.251383 TGCTATCTTCTAGTAAGCAATACCTT 57.749 34.615 0.00 0.00 40.05 3.50
231 232 8.705594 TGCTATCTTCTAGTAAGCAATACCTTT 58.294 33.333 0.00 0.00 40.05 3.11
232 233 9.549078 GCTATCTTCTAGTAAGCAATACCTTTT 57.451 33.333 0.00 0.00 34.89 2.27
254 255 5.771602 TTTTGCAAACGAAAAGAAGAACC 57.228 34.783 12.39 0.00 0.00 3.62
255 256 4.442375 TTGCAAACGAAAAGAAGAACCA 57.558 36.364 0.00 0.00 0.00 3.67
256 257 4.647424 TGCAAACGAAAAGAAGAACCAT 57.353 36.364 0.00 0.00 0.00 3.55
259 260 4.676924 GCAAACGAAAAGAAGAACCATCAG 59.323 41.667 0.00 0.00 0.00 2.90
260 261 5.505654 GCAAACGAAAAGAAGAACCATCAGA 60.506 40.000 0.00 0.00 0.00 3.27
262 263 5.869753 ACGAAAAGAAGAACCATCAGATG 57.130 39.130 3.04 3.04 0.00 2.90
263 264 5.308825 ACGAAAAGAAGAACCATCAGATGT 58.691 37.500 9.64 0.00 0.00 3.06
264 265 5.765182 ACGAAAAGAAGAACCATCAGATGTT 59.235 36.000 9.64 4.10 0.00 2.71
265 266 6.263168 ACGAAAAGAAGAACCATCAGATGTTT 59.737 34.615 9.64 0.77 0.00 2.83
266 267 7.141363 CGAAAAGAAGAACCATCAGATGTTTT 58.859 34.615 9.64 7.36 0.00 2.43
267 268 7.649306 CGAAAAGAAGAACCATCAGATGTTTTT 59.351 33.333 9.64 5.66 0.00 1.94
268 269 8.652810 AAAAGAAGAACCATCAGATGTTTTTG 57.347 30.769 9.64 0.00 0.00 2.44
269 270 6.336842 AGAAGAACCATCAGATGTTTTTGG 57.663 37.500 9.64 0.00 0.00 3.28
270 271 5.244626 AGAAGAACCATCAGATGTTTTTGGG 59.755 40.000 9.64 0.00 0.00 4.12
271 272 3.834231 AGAACCATCAGATGTTTTTGGGG 59.166 43.478 9.64 0.00 0.00 4.96
273 274 3.855668 ACCATCAGATGTTTTTGGGGAA 58.144 40.909 9.64 0.00 0.00 3.97
274 275 4.428570 ACCATCAGATGTTTTTGGGGAAT 58.571 39.130 9.64 0.00 0.00 3.01
275 276 4.845796 ACCATCAGATGTTTTTGGGGAATT 59.154 37.500 9.64 0.00 0.00 2.17
276 277 5.180271 CCATCAGATGTTTTTGGGGAATTG 58.820 41.667 9.64 0.00 0.00 2.32
277 278 5.280113 CCATCAGATGTTTTTGGGGAATTGT 60.280 40.000 9.64 0.00 0.00 2.71
279 280 5.147032 TCAGATGTTTTTGGGGAATTGTCT 58.853 37.500 0.00 0.00 0.00 3.41
280 281 5.602145 TCAGATGTTTTTGGGGAATTGTCTT 59.398 36.000 0.00 0.00 0.00 3.01
282 283 5.840693 AGATGTTTTTGGGGAATTGTCTTCT 59.159 36.000 0.00 0.00 0.00 2.85
283 284 5.948742 TGTTTTTGGGGAATTGTCTTCTT 57.051 34.783 0.00 0.00 0.00 2.52
284 285 5.912892 TGTTTTTGGGGAATTGTCTTCTTC 58.087 37.500 0.00 0.00 0.00 2.87
285 286 5.163353 TGTTTTTGGGGAATTGTCTTCTTCC 60.163 40.000 0.00 0.00 40.22 3.46
292 293 3.009584 GGAATTGTCTTCTTCCCTCTGGT 59.990 47.826 0.00 0.00 35.83 4.00
293 294 3.990959 ATTGTCTTCTTCCCTCTGGTC 57.009 47.619 0.00 0.00 0.00 4.02
294 295 1.257743 TGTCTTCTTCCCTCTGGTCG 58.742 55.000 0.00 0.00 0.00 4.79
295 296 0.533032 GTCTTCTTCCCTCTGGTCGG 59.467 60.000 0.00 0.00 0.00 4.79
296 297 1.219393 CTTCTTCCCTCTGGTCGGC 59.781 63.158 0.00 0.00 0.00 5.54
297 298 1.535444 TTCTTCCCTCTGGTCGGCA 60.535 57.895 0.00 0.00 0.00 5.69
298 299 1.544825 TTCTTCCCTCTGGTCGGCAG 61.545 60.000 0.00 0.00 0.00 4.85
299 300 3.672295 CTTCCCTCTGGTCGGCAGC 62.672 68.421 0.00 0.00 0.00 5.25
302 303 4.767255 CCTCTGGTCGGCAGCCAC 62.767 72.222 13.30 8.81 31.85 5.01
303 304 4.767255 CTCTGGTCGGCAGCCACC 62.767 72.222 20.57 20.57 31.85 4.61
313 314 4.100084 CAGCCACCTGCCGATCCA 62.100 66.667 0.00 0.00 42.71 3.41
314 315 4.101448 AGCCACCTGCCGATCCAC 62.101 66.667 0.00 0.00 42.71 4.02
316 317 4.489771 CCACCTGCCGATCCACCC 62.490 72.222 0.00 0.00 0.00 4.61
317 318 3.716195 CACCTGCCGATCCACCCA 61.716 66.667 0.00 0.00 0.00 4.51
318 319 2.692368 ACCTGCCGATCCACCCAT 60.692 61.111 0.00 0.00 0.00 4.00
320 321 2.903855 CTGCCGATCCACCCATGC 60.904 66.667 0.00 0.00 0.00 4.06
321 322 4.854924 TGCCGATCCACCCATGCG 62.855 66.667 0.00 0.00 0.00 4.73
322 323 4.545706 GCCGATCCACCCATGCGA 62.546 66.667 0.00 0.00 0.00 5.10
323 324 2.280389 CCGATCCACCCATGCGAG 60.280 66.667 0.00 0.00 0.00 5.03
324 325 2.969238 CGATCCACCCATGCGAGC 60.969 66.667 0.00 0.00 0.00 5.03
325 326 2.190313 GATCCACCCATGCGAGCA 59.810 61.111 0.00 0.00 0.00 4.26
326 327 2.124570 ATCCACCCATGCGAGCAC 60.125 61.111 0.00 0.00 0.00 4.40
328 329 3.434319 CCACCCATGCGAGCACAC 61.434 66.667 0.00 0.00 0.00 3.82
330 331 4.314440 ACCCATGCGAGCACACGT 62.314 61.111 0.00 0.00 35.59 4.49
331 332 2.125713 CCCATGCGAGCACACGTA 60.126 61.111 0.00 0.00 35.59 3.57
332 333 2.167219 CCCATGCGAGCACACGTAG 61.167 63.158 0.00 0.00 35.59 3.51
333 334 2.697425 CATGCGAGCACACGTAGC 59.303 61.111 0.00 4.13 35.59 3.58
338 339 4.436998 GAGCACACGTAGCGCCCT 62.437 66.667 2.29 0.00 37.01 5.19
339 340 4.742201 AGCACACGTAGCGCCCTG 62.742 66.667 2.29 0.00 37.01 4.45
353 354 2.187946 CCTGCCTCGGCGATTCTT 59.812 61.111 11.27 0.00 45.51 2.52
354 355 1.884926 CCTGCCTCGGCGATTCTTC 60.885 63.158 11.27 0.00 45.51 2.87
356 357 2.186903 GCCTCGGCGATTCTTCCA 59.813 61.111 11.27 0.00 0.00 3.53
357 358 1.227674 GCCTCGGCGATTCTTCCAT 60.228 57.895 11.27 0.00 0.00 3.41
359 360 0.390860 CCTCGGCGATTCTTCCATCT 59.609 55.000 11.27 0.00 0.00 2.90
360 361 1.495878 CTCGGCGATTCTTCCATCTG 58.504 55.000 11.27 0.00 0.00 2.90
361 362 1.067669 CTCGGCGATTCTTCCATCTGA 59.932 52.381 11.27 0.00 0.00 3.27
363 364 1.587547 GGCGATTCTTCCATCTGACC 58.412 55.000 0.00 0.00 0.00 4.02
364 365 1.587547 GCGATTCTTCCATCTGACCC 58.412 55.000 0.00 0.00 0.00 4.46
368 369 2.044793 TTCTTCCATCTGACCCACCT 57.955 50.000 0.00 0.00 0.00 4.00
369 370 1.279496 TCTTCCATCTGACCCACCTG 58.721 55.000 0.00 0.00 0.00 4.00
370 371 0.393537 CTTCCATCTGACCCACCTGC 60.394 60.000 0.00 0.00 0.00 4.85
371 372 0.842030 TTCCATCTGACCCACCTGCT 60.842 55.000 0.00 0.00 0.00 4.24
372 373 1.222936 CCATCTGACCCACCTGCTC 59.777 63.158 0.00 0.00 0.00 4.26
375 376 0.842030 ATCTGACCCACCTGCTCCAA 60.842 55.000 0.00 0.00 0.00 3.53
376 377 1.002868 CTGACCCACCTGCTCCAAG 60.003 63.158 0.00 0.00 0.00 3.61
389 390 3.930634 GCTCCAAGCAAATGAAACTCT 57.069 42.857 0.00 0.00 41.89 3.24
391 392 5.573337 GCTCCAAGCAAATGAAACTCTAT 57.427 39.130 0.00 0.00 41.89 1.98
392 393 6.683974 GCTCCAAGCAAATGAAACTCTATA 57.316 37.500 0.00 0.00 41.89 1.31
394 395 7.538575 GCTCCAAGCAAATGAAACTCTATAAA 58.461 34.615 0.00 0.00 41.89 1.40
395 396 7.699812 GCTCCAAGCAAATGAAACTCTATAAAG 59.300 37.037 0.00 0.00 41.89 1.85
396 397 8.862325 TCCAAGCAAATGAAACTCTATAAAGA 57.138 30.769 0.00 0.00 0.00 2.52
412 413 9.778741 CTCTATAAAGATATTTTAGTGGGTGCA 57.221 33.333 0.00 0.00 0.00 4.57
413 414 9.555727 TCTATAAAGATATTTTAGTGGGTGCAC 57.444 33.333 8.80 8.80 0.00 4.57
415 416 8.766994 ATAAAGATATTTTAGTGGGTGCACAT 57.233 30.769 20.43 3.10 0.00 3.21
416 417 7.480760 AAAGATATTTTAGTGGGTGCACATT 57.519 32.000 20.43 3.01 0.00 2.71
418 419 7.480760 AGATATTTTAGTGGGTGCACATTTT 57.519 32.000 20.43 3.77 0.00 1.82
419 420 7.906327 AGATATTTTAGTGGGTGCACATTTTT 58.094 30.769 20.43 2.26 0.00 1.94
420 421 8.034804 AGATATTTTAGTGGGTGCACATTTTTC 58.965 33.333 20.43 0.00 0.00 2.29
422 423 4.846779 TTAGTGGGTGCACATTTTTCTC 57.153 40.909 20.43 0.00 0.00 2.87
423 424 1.963515 AGTGGGTGCACATTTTTCTCC 59.036 47.619 20.43 8.38 0.00 3.71
424 425 1.686052 GTGGGTGCACATTTTTCTCCA 59.314 47.619 20.43 11.11 0.00 3.86
426 427 2.768527 TGGGTGCACATTTTTCTCCAAA 59.231 40.909 20.43 0.00 0.00 3.28
427 428 3.198635 TGGGTGCACATTTTTCTCCAAAA 59.801 39.130 20.43 0.00 38.76 2.44
429 430 4.273235 GGGTGCACATTTTTCTCCAAAAAG 59.727 41.667 20.43 0.00 43.22 2.27
430 431 4.875536 GGTGCACATTTTTCTCCAAAAAGT 59.124 37.500 20.43 0.00 43.22 2.66
431 432 6.045955 GGTGCACATTTTTCTCCAAAAAGTA 58.954 36.000 20.43 0.00 43.22 2.24
432 433 6.536941 GGTGCACATTTTTCTCCAAAAAGTAA 59.463 34.615 20.43 0.00 43.22 2.24
433 434 7.065204 GGTGCACATTTTTCTCCAAAAAGTAAA 59.935 33.333 20.43 0.00 43.22 2.01
434 435 8.116136 GTGCACATTTTTCTCCAAAAAGTAAAG 58.884 33.333 13.17 0.00 43.22 1.85
435 436 7.821846 TGCACATTTTTCTCCAAAAAGTAAAGT 59.178 29.630 0.00 0.00 43.22 2.66
436 437 8.116136 GCACATTTTTCTCCAAAAAGTAAAGTG 58.884 33.333 0.00 0.00 43.22 3.16
437 438 8.116136 CACATTTTTCTCCAAAAAGTAAAGTGC 58.884 33.333 0.00 0.00 43.22 4.40
438 439 7.821846 ACATTTTTCTCCAAAAAGTAAAGTGCA 59.178 29.630 0.00 0.00 43.22 4.57
439 440 8.663911 CATTTTTCTCCAAAAAGTAAAGTGCAA 58.336 29.630 0.00 0.00 43.22 4.08
440 441 8.608844 TTTTTCTCCAAAAAGTAAAGTGCAAA 57.391 26.923 0.00 0.00 36.70 3.68
441 442 8.785329 TTTTCTCCAAAAAGTAAAGTGCAAAT 57.215 26.923 0.00 0.00 0.00 2.32
442 443 7.769272 TTCTCCAAAAAGTAAAGTGCAAATG 57.231 32.000 0.00 0.00 0.00 2.32
444 445 7.551585 TCTCCAAAAAGTAAAGTGCAAATGAA 58.448 30.769 0.00 0.00 0.00 2.57
445 446 8.203485 TCTCCAAAAAGTAAAGTGCAAATGAAT 58.797 29.630 0.00 0.00 0.00 2.57
446 447 8.729805 TCCAAAAAGTAAAGTGCAAATGAATT 57.270 26.923 0.00 0.00 0.00 2.17
447 448 8.825745 TCCAAAAAGTAAAGTGCAAATGAATTC 58.174 29.630 0.00 0.00 0.00 2.17
452 453 9.696917 AAAGTAAAGTGCAAATGAATTCTAAGG 57.303 29.630 7.05 0.00 0.00 2.69
454 455 9.077885 AGTAAAGTGCAAATGAATTCTAAGGAA 57.922 29.630 7.05 0.00 35.78 3.36
455 456 9.691362 GTAAAGTGCAAATGAATTCTAAGGAAA 57.309 29.630 7.05 0.00 34.90 3.13
457 458 9.783081 AAAGTGCAAATGAATTCTAAGGAAAAT 57.217 25.926 7.05 0.00 34.90 1.82
458 459 9.783081 AAGTGCAAATGAATTCTAAGGAAAATT 57.217 25.926 7.05 0.00 34.90 1.82
462 463 9.651913 GCAAATGAATTCTAAGGAAAATTACCA 57.348 29.630 7.05 0.00 34.90 3.25
466 467 8.415950 TGAATTCTAAGGAAAATTACCAAGCA 57.584 30.769 7.05 0.00 34.90 3.91
467 468 9.034800 TGAATTCTAAGGAAAATTACCAAGCAT 57.965 29.630 7.05 0.00 34.90 3.79
472 473 6.731292 AAGGAAAATTACCAAGCATATCCC 57.269 37.500 4.75 0.00 0.00 3.85
473 474 5.147767 AGGAAAATTACCAAGCATATCCCC 58.852 41.667 4.75 0.00 0.00 4.81
474 475 5.103086 AGGAAAATTACCAAGCATATCCCCT 60.103 40.000 4.75 0.00 0.00 4.79
475 476 6.104094 AGGAAAATTACCAAGCATATCCCCTA 59.896 38.462 4.75 0.00 0.00 3.53
476 477 6.780522 GGAAAATTACCAAGCATATCCCCTAA 59.219 38.462 0.00 0.00 0.00 2.69
477 478 7.289084 GGAAAATTACCAAGCATATCCCCTAAA 59.711 37.037 0.00 0.00 0.00 1.85
478 479 8.616799 AAAATTACCAAGCATATCCCCTAAAA 57.383 30.769 0.00 0.00 0.00 1.52
509 5245 6.047870 CCTAGCATATCAGTCCTATGAATGC 58.952 44.000 12.09 12.09 40.31 3.56
515 5251 7.466996 GCATATCAGTCCTATGAATGCAATAGC 60.467 40.741 0.00 0.00 40.06 2.97
524 5260 5.717078 ATGAATGCAATAGCCAACATAGG 57.283 39.130 0.00 0.00 41.13 2.57
530 5266 7.838079 ATGCAATAGCCAACATAGGAAAATA 57.162 32.000 0.00 0.00 41.13 1.40
546 5282 7.948034 AGGAAAATACCTAGGATCTAGATCG 57.052 40.000 23.30 13.62 38.65 3.69
547 5283 7.471890 AGGAAAATACCTAGGATCTAGATCGT 58.528 38.462 26.33 26.33 38.65 3.73
548 5284 7.612633 AGGAAAATACCTAGGATCTAGATCGTC 59.387 40.741 26.76 14.44 38.65 4.20
549 5285 7.612633 GGAAAATACCTAGGATCTAGATCGTCT 59.387 40.741 26.76 19.86 38.69 4.18
593 5336 1.965414 TCAATGCCCTTACCCTCTCA 58.035 50.000 0.00 0.00 0.00 3.27
602 5345 3.648067 CCCTTACCCTCTCATATGCTTCA 59.352 47.826 0.00 0.00 0.00 3.02
606 5349 4.620589 ACCCTCTCATATGCTTCATCTG 57.379 45.455 0.00 0.00 0.00 2.90
607 5350 3.972638 ACCCTCTCATATGCTTCATCTGT 59.027 43.478 0.00 0.00 0.00 3.41
608 5351 5.150715 ACCCTCTCATATGCTTCATCTGTA 58.849 41.667 0.00 0.00 0.00 2.74
611 5354 7.622878 ACCCTCTCATATGCTTCATCTGTATAT 59.377 37.037 0.00 0.00 0.00 0.86
625 5376 8.196802 TCATCTGTATATTTTCCTTGTCGTTG 57.803 34.615 0.00 0.00 0.00 4.10
641 5392 0.310543 GTTGCATGCCGACACTTTCA 59.689 50.000 16.68 0.00 0.00 2.69
646 5397 2.677836 GCATGCCGACACTTTCAATCTA 59.322 45.455 6.36 0.00 0.00 1.98
647 5398 3.242543 GCATGCCGACACTTTCAATCTAG 60.243 47.826 6.36 0.00 0.00 2.43
648 5399 3.678056 TGCCGACACTTTCAATCTAGT 57.322 42.857 0.00 0.00 0.00 2.57
665 5418 8.801299 TCAATCTAGTATCATCTTCTTAGGCAG 58.199 37.037 0.00 0.00 0.00 4.85
706 5462 6.482973 GCTAGAGAAAAAGAAGGATCAGATGG 59.517 42.308 0.00 0.00 0.00 3.51
715 5471 2.287584 AGGATCAGATGGTTTTGGGGA 58.712 47.619 0.00 0.00 0.00 4.81
717 5473 2.760650 GGATCAGATGGTTTTGGGGAAC 59.239 50.000 0.00 0.00 0.00 3.62
734 5495 2.436173 GGAACTCATCTTCTTCCCGGAT 59.564 50.000 0.73 0.00 0.00 4.18
740 5501 2.478872 TCTTCTTCCCGGATGAGGAT 57.521 50.000 0.73 0.00 32.10 3.24
749 5510 1.696336 CCGGATGAGGATGAATGAGGT 59.304 52.381 0.00 0.00 0.00 3.85
879 5671 0.319040 CGGCGATTCGTCCATCTGAT 60.319 55.000 0.00 0.00 0.00 2.90
936 5735 1.134877 CATCCACTCACGAGAGCACAT 60.135 52.381 9.97 0.00 46.09 3.21
998 5797 0.171903 CATGCTGCACCTGCTTTACC 59.828 55.000 3.57 0.00 42.66 2.85
1029 5837 3.206150 GCTTCACACAACCAAGAGAAGA 58.794 45.455 0.00 0.00 35.67 2.87
1030 5838 3.002759 GCTTCACACAACCAAGAGAAGAC 59.997 47.826 0.00 0.00 35.67 3.01
1031 5839 3.904800 TCACACAACCAAGAGAAGACA 57.095 42.857 0.00 0.00 0.00 3.41
1032 5840 4.214986 TCACACAACCAAGAGAAGACAA 57.785 40.909 0.00 0.00 0.00 3.18
1033 5841 4.191544 TCACACAACCAAGAGAAGACAAG 58.808 43.478 0.00 0.00 0.00 3.16
1043 5851 5.296780 CCAAGAGAAGACAAGTAAACAGCAA 59.703 40.000 0.00 0.00 0.00 3.91
1072 5890 6.513180 AGTAGATTTCGAGTGACAAGTTCAA 58.487 36.000 0.00 0.00 35.39 2.69
1138 9168 3.949754 GCATCATGGAGAACATCAAGGAA 59.050 43.478 0.00 0.00 37.84 3.36
1270 11013 4.853142 CATGGGCAGCAGGGGCAT 62.853 66.667 0.00 0.00 44.61 4.40
1292 11035 2.358737 GAACGACTGGCACTGGGG 60.359 66.667 0.00 0.00 0.00 4.96
1318 11070 1.587054 CACCGGCGAGAAGAAGAGT 59.413 57.895 9.30 0.00 0.00 3.24
1333 11085 3.260380 AGAAGAGTCTCATGGACAAGGTG 59.740 47.826 14.31 0.00 46.72 4.00
1423 11176 9.871238 ATACTCCACCGTATATGAATTATGAAC 57.129 33.333 0.00 0.00 0.00 3.18
1424 11177 7.963532 ACTCCACCGTATATGAATTATGAACT 58.036 34.615 0.00 0.00 0.00 3.01
1482 11242 3.181465 GGAGGAGCGAATGTATCTTTGGA 60.181 47.826 0.00 0.00 0.00 3.53
1505 11268 5.821516 TTAAGTTTTCACGGACATGTGTT 57.178 34.783 1.15 0.00 40.74 3.32
1506 11269 4.712122 AAGTTTTCACGGACATGTGTTT 57.288 36.364 1.15 0.00 40.74 2.83
1507 11270 4.027572 AGTTTTCACGGACATGTGTTTG 57.972 40.909 1.15 0.00 40.74 2.93
1508 11271 2.483583 TTTCACGGACATGTGTTTGC 57.516 45.000 1.15 0.00 40.74 3.68
1509 11272 1.383523 TTCACGGACATGTGTTTGCA 58.616 45.000 1.15 0.00 40.74 4.08
1510 11273 0.943673 TCACGGACATGTGTTTGCAG 59.056 50.000 1.15 0.00 40.74 4.41
1511 11274 0.662619 CACGGACATGTGTTTGCAGT 59.337 50.000 1.15 0.00 35.12 4.40
1512 11275 1.065401 CACGGACATGTGTTTGCAGTT 59.935 47.619 1.15 0.00 35.12 3.16
1513 11276 1.748493 ACGGACATGTGTTTGCAGTTT 59.252 42.857 1.15 0.00 0.00 2.66
1514 11277 2.946329 ACGGACATGTGTTTGCAGTTTA 59.054 40.909 1.15 0.00 0.00 2.01
1515 11278 3.242936 ACGGACATGTGTTTGCAGTTTAC 60.243 43.478 1.15 0.00 0.00 2.01
1516 11279 3.242903 CGGACATGTGTTTGCAGTTTACA 60.243 43.478 1.15 0.00 0.00 2.41
1517 11280 4.041723 GGACATGTGTTTGCAGTTTACAC 58.958 43.478 1.15 13.33 41.85 2.90
1518 11281 4.202010 GGACATGTGTTTGCAGTTTACACT 60.202 41.667 1.15 4.99 41.98 3.55
1519 11282 4.920376 ACATGTGTTTGCAGTTTACACTC 58.080 39.130 18.10 1.73 41.98 3.51
1520 11283 4.640201 ACATGTGTTTGCAGTTTACACTCT 59.360 37.500 18.10 8.21 41.98 3.24
1521 11284 5.820423 ACATGTGTTTGCAGTTTACACTCTA 59.180 36.000 18.10 5.36 41.98 2.43
1522 11285 6.486657 ACATGTGTTTGCAGTTTACACTCTAT 59.513 34.615 18.10 6.86 41.98 1.98
1523 11286 6.299023 TGTGTTTGCAGTTTACACTCTATG 57.701 37.500 18.10 0.00 41.98 2.23
1524 11287 5.820423 TGTGTTTGCAGTTTACACTCTATGT 59.180 36.000 18.10 0.00 46.06 2.29
1525 11288 6.018262 TGTGTTTGCAGTTTACACTCTATGTC 60.018 38.462 18.10 0.00 42.09 3.06
1526 11289 5.176774 TGTTTGCAGTTTACACTCTATGTCG 59.823 40.000 0.00 0.00 42.09 4.35
1527 11290 4.514781 TGCAGTTTACACTCTATGTCGT 57.485 40.909 0.00 0.00 42.09 4.34
1528 11291 4.234574 TGCAGTTTACACTCTATGTCGTG 58.765 43.478 0.00 0.00 42.09 4.35
1529 11292 3.060895 GCAGTTTACACTCTATGTCGTGC 59.939 47.826 0.00 0.00 42.09 5.34
1530 11293 4.234574 CAGTTTACACTCTATGTCGTGCA 58.765 43.478 0.00 0.00 42.09 4.57
1531 11294 4.684242 CAGTTTACACTCTATGTCGTGCAA 59.316 41.667 0.00 0.00 42.09 4.08
1532 11295 5.176774 CAGTTTACACTCTATGTCGTGCAAA 59.823 40.000 0.00 0.00 42.09 3.68
1533 11296 5.932303 AGTTTACACTCTATGTCGTGCAAAT 59.068 36.000 0.00 0.00 42.09 2.32
1534 11297 6.426937 AGTTTACACTCTATGTCGTGCAAATT 59.573 34.615 0.00 0.00 42.09 1.82
1535 11298 6.795098 TTACACTCTATGTCGTGCAAATTT 57.205 33.333 0.00 0.00 42.09 1.82
1536 11299 5.283060 ACACTCTATGTCGTGCAAATTTC 57.717 39.130 0.00 0.00 36.54 2.17
1789 11579 4.079038 ACCCCTCATCATTCCAAATCATCA 60.079 41.667 0.00 0.00 0.00 3.07
1952 11742 4.978083 ATTTAGCTTGAGCATGAAGTGG 57.022 40.909 5.70 0.00 45.16 4.00
2054 11844 6.723298 TTAGTTTGACCATTGTTTGACCAT 57.277 33.333 0.00 0.00 0.00 3.55
2383 12196 6.264841 AGAAATTCCAGAGAGATTTTGCAC 57.735 37.500 0.00 0.00 0.00 4.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.386113 GTCCGCTAGATGGTCCAGAC 59.614 60.000 0.00 0.00 0.00 3.51
4 5 0.759346 ATTGGTCCGCTAGATGGTCC 59.241 55.000 9.73 9.73 35.53 4.46
6 7 4.838986 ACTTATATTGGTCCGCTAGATGGT 59.161 41.667 0.00 0.00 0.00 3.55
7 8 5.407407 ACTTATATTGGTCCGCTAGATGG 57.593 43.478 0.00 0.00 0.00 3.51
8 9 5.411781 GGACTTATATTGGTCCGCTAGATG 58.588 45.833 9.89 0.00 41.82 2.90
9 10 5.662674 GGACTTATATTGGTCCGCTAGAT 57.337 43.478 9.89 0.00 41.82 1.98
16 17 2.521105 ACGCGGACTTATATTGGTCC 57.479 50.000 12.47 13.58 46.00 4.46
17 18 2.542595 CCAACGCGGACTTATATTGGTC 59.457 50.000 12.47 0.00 36.56 4.02
18 19 2.168936 TCCAACGCGGACTTATATTGGT 59.831 45.455 12.47 0.00 39.64 3.67
19 20 2.828877 TCCAACGCGGACTTATATTGG 58.171 47.619 12.47 12.82 39.64 3.16
38 39 4.412796 TGTCTGGATCATGGAAGTCATC 57.587 45.455 0.00 0.00 32.92 2.92
41 42 4.694509 GCATATGTCTGGATCATGGAAGTC 59.305 45.833 4.29 0.00 0.00 3.01
42 43 4.649692 GCATATGTCTGGATCATGGAAGT 58.350 43.478 4.29 0.00 0.00 3.01
43 44 3.683340 CGCATATGTCTGGATCATGGAAG 59.317 47.826 4.29 0.00 0.00 3.46
45 46 2.634453 ACGCATATGTCTGGATCATGGA 59.366 45.455 4.29 0.00 0.00 3.41
46 47 2.740447 CACGCATATGTCTGGATCATGG 59.260 50.000 4.29 0.00 0.00 3.66
48 49 4.251268 CATCACGCATATGTCTGGATCAT 58.749 43.478 4.29 0.00 0.00 2.45
49 50 3.070015 ACATCACGCATATGTCTGGATCA 59.930 43.478 4.29 0.00 32.02 2.92
50 51 3.657634 ACATCACGCATATGTCTGGATC 58.342 45.455 4.29 0.00 32.02 3.36
51 52 3.758755 ACATCACGCATATGTCTGGAT 57.241 42.857 4.29 0.61 32.02 3.41
53 54 3.789791 GCAAACATCACGCATATGTCTGG 60.790 47.826 4.29 0.00 36.56 3.86
55 56 2.030823 CGCAAACATCACGCATATGTCT 59.969 45.455 4.29 0.00 36.56 3.41
56 57 2.365948 CGCAAACATCACGCATATGTC 58.634 47.619 4.29 0.00 36.56 3.06
57 58 1.063912 CCGCAAACATCACGCATATGT 59.936 47.619 4.29 0.00 39.22 2.29
58 59 1.597690 CCCGCAAACATCACGCATATG 60.598 52.381 0.00 0.00 0.00 1.78
59 60 0.662619 CCCGCAAACATCACGCATAT 59.337 50.000 0.00 0.00 0.00 1.78
60 61 0.675208 ACCCGCAAACATCACGCATA 60.675 50.000 0.00 0.00 0.00 3.14
63 64 2.175811 GACCCGCAAACATCACGC 59.824 61.111 0.00 0.00 0.00 5.34
64 65 2.474266 CGACCCGCAAACATCACG 59.526 61.111 0.00 0.00 0.00 4.35
67 68 2.886730 ATCCCCGACCCGCAAACATC 62.887 60.000 0.00 0.00 0.00 3.06
68 69 2.978946 ATCCCCGACCCGCAAACAT 61.979 57.895 0.00 0.00 0.00 2.71
69 70 3.642503 ATCCCCGACCCGCAAACA 61.643 61.111 0.00 0.00 0.00 2.83
70 71 3.131478 CATCCCCGACCCGCAAAC 61.131 66.667 0.00 0.00 0.00 2.93
82 83 5.221441 GGTATTGAAATGTTTAGGGCATCCC 60.221 44.000 0.00 0.00 45.90 3.85
83 84 5.362430 TGGTATTGAAATGTTTAGGGCATCC 59.638 40.000 0.00 0.00 0.00 3.51
84 85 6.463995 TGGTATTGAAATGTTTAGGGCATC 57.536 37.500 0.00 0.00 0.00 3.91
85 86 6.610830 TCATGGTATTGAAATGTTTAGGGCAT 59.389 34.615 0.00 0.00 0.00 4.40
87 88 6.463995 TCATGGTATTGAAATGTTTAGGGC 57.536 37.500 0.00 0.00 0.00 5.19
88 89 8.694540 TGATTCATGGTATTGAAATGTTTAGGG 58.305 33.333 0.00 0.00 38.98 3.53
92 93 9.775854 TGTTTGATTCATGGTATTGAAATGTTT 57.224 25.926 0.00 0.00 38.98 2.83
93 94 9.426837 CTGTTTGATTCATGGTATTGAAATGTT 57.573 29.630 0.00 0.00 38.98 2.71
95 96 7.010738 GGCTGTTTGATTCATGGTATTGAAATG 59.989 37.037 0.00 0.00 38.98 2.32
96 97 7.043565 GGCTGTTTGATTCATGGTATTGAAAT 58.956 34.615 0.00 0.00 38.98 2.17
97 98 6.014755 TGGCTGTTTGATTCATGGTATTGAAA 60.015 34.615 0.00 0.00 38.98 2.69
98 99 5.479724 TGGCTGTTTGATTCATGGTATTGAA 59.520 36.000 0.00 0.00 39.77 2.69
99 100 5.015515 TGGCTGTTTGATTCATGGTATTGA 58.984 37.500 0.00 0.00 0.00 2.57
102 103 4.771577 TGTTGGCTGTTTGATTCATGGTAT 59.228 37.500 0.00 0.00 0.00 2.73
104 105 2.964464 TGTTGGCTGTTTGATTCATGGT 59.036 40.909 0.00 0.00 0.00 3.55
105 106 3.663995 TGTTGGCTGTTTGATTCATGG 57.336 42.857 0.00 0.00 0.00 3.66
107 108 6.839124 TTCTATGTTGGCTGTTTGATTCAT 57.161 33.333 0.00 0.00 0.00 2.57
110 111 6.839124 TCATTCTATGTTGGCTGTTTGATT 57.161 33.333 0.00 0.00 0.00 2.57
111 112 6.604396 TGATCATTCTATGTTGGCTGTTTGAT 59.396 34.615 0.00 0.00 0.00 2.57
112 113 5.945191 TGATCATTCTATGTTGGCTGTTTGA 59.055 36.000 0.00 0.00 0.00 2.69
113 114 6.198650 TGATCATTCTATGTTGGCTGTTTG 57.801 37.500 0.00 0.00 0.00 2.93
114 115 6.839124 TTGATCATTCTATGTTGGCTGTTT 57.161 33.333 0.00 0.00 0.00 2.83
115 116 6.350445 GGTTTGATCATTCTATGTTGGCTGTT 60.350 38.462 0.00 0.00 0.00 3.16
116 117 5.126061 GGTTTGATCATTCTATGTTGGCTGT 59.874 40.000 0.00 0.00 0.00 4.40
117 118 5.450965 GGGTTTGATCATTCTATGTTGGCTG 60.451 44.000 0.00 0.00 0.00 4.85
118 119 4.646492 GGGTTTGATCATTCTATGTTGGCT 59.354 41.667 0.00 0.00 0.00 4.75
119 120 4.202151 GGGGTTTGATCATTCTATGTTGGC 60.202 45.833 0.00 0.00 0.00 4.52
121 122 6.780457 AAGGGGTTTGATCATTCTATGTTG 57.220 37.500 0.00 0.00 0.00 3.33
122 123 7.342026 GGTTAAGGGGTTTGATCATTCTATGTT 59.658 37.037 0.00 0.00 0.00 2.71
123 124 6.833933 GGTTAAGGGGTTTGATCATTCTATGT 59.166 38.462 0.00 0.00 0.00 2.29
124 125 7.062957 AGGTTAAGGGGTTTGATCATTCTATG 58.937 38.462 0.00 0.00 0.00 2.23
125 126 7.226059 AGGTTAAGGGGTTTGATCATTCTAT 57.774 36.000 0.00 0.00 0.00 1.98
126 127 6.652205 AGGTTAAGGGGTTTGATCATTCTA 57.348 37.500 0.00 0.00 0.00 2.10
127 128 5.536497 AGGTTAAGGGGTTTGATCATTCT 57.464 39.130 0.00 0.00 0.00 2.40
128 129 6.210584 TGAAAGGTTAAGGGGTTTGATCATTC 59.789 38.462 0.00 0.00 0.00 2.67
130 131 5.650283 TGAAAGGTTAAGGGGTTTGATCAT 58.350 37.500 0.00 0.00 0.00 2.45
131 132 5.068215 TGAAAGGTTAAGGGGTTTGATCA 57.932 39.130 0.00 0.00 0.00 2.92
132 133 7.684428 GCATATGAAAGGTTAAGGGGTTTGATC 60.684 40.741 6.97 0.00 0.00 2.92
133 134 6.098266 GCATATGAAAGGTTAAGGGGTTTGAT 59.902 38.462 6.97 0.00 0.00 2.57
135 136 5.422012 AGCATATGAAAGGTTAAGGGGTTTG 59.578 40.000 6.97 0.00 0.00 2.93
136 137 5.589831 AGCATATGAAAGGTTAAGGGGTTT 58.410 37.500 6.97 0.00 0.00 3.27
138 139 4.881157 AGCATATGAAAGGTTAAGGGGT 57.119 40.909 6.97 0.00 0.00 4.95
140 141 4.881850 ACGAAGCATATGAAAGGTTAAGGG 59.118 41.667 6.97 0.00 0.00 3.95
141 142 5.817816 AGACGAAGCATATGAAAGGTTAAGG 59.182 40.000 6.97 0.00 0.00 2.69
143 144 7.553334 AGTAGACGAAGCATATGAAAGGTTAA 58.447 34.615 6.97 0.00 0.00 2.01
145 146 5.978814 AGTAGACGAAGCATATGAAAGGTT 58.021 37.500 6.97 0.00 0.00 3.50
146 147 5.599999 AGTAGACGAAGCATATGAAAGGT 57.400 39.130 6.97 0.00 0.00 3.50
147 148 7.203910 AGTAAGTAGACGAAGCATATGAAAGG 58.796 38.462 6.97 0.00 0.00 3.11
149 150 8.997621 AAAGTAAGTAGACGAAGCATATGAAA 57.002 30.769 6.97 0.00 0.00 2.69
150 151 7.431376 CGAAAGTAAGTAGACGAAGCATATGAA 59.569 37.037 6.97 0.00 0.00 2.57
153 154 6.793349 ACGAAAGTAAGTAGACGAAGCATAT 58.207 36.000 0.00 0.00 46.88 1.78
172 173 0.584396 GGCATGTGACGACAACGAAA 59.416 50.000 0.00 0.00 42.66 3.46
231 232 5.696724 TGGTTCTTCTTTTCGTTTGCAAAAA 59.303 32.000 14.67 2.45 0.00 1.94
232 233 5.230942 TGGTTCTTCTTTTCGTTTGCAAAA 58.769 33.333 14.67 0.00 0.00 2.44
233 234 4.810790 TGGTTCTTCTTTTCGTTTGCAAA 58.189 34.783 8.05 8.05 0.00 3.68
234 235 4.442375 TGGTTCTTCTTTTCGTTTGCAA 57.558 36.364 0.00 0.00 0.00 4.08
235 236 4.097135 TGATGGTTCTTCTTTTCGTTTGCA 59.903 37.500 0.00 0.00 0.00 4.08
236 237 4.606961 TGATGGTTCTTCTTTTCGTTTGC 58.393 39.130 0.00 0.00 0.00 3.68
238 239 6.263168 ACATCTGATGGTTCTTCTTTTCGTTT 59.737 34.615 20.83 0.00 33.60 3.60
240 241 5.308825 ACATCTGATGGTTCTTCTTTTCGT 58.691 37.500 20.83 0.00 33.60 3.85
241 242 5.869753 ACATCTGATGGTTCTTCTTTTCG 57.130 39.130 20.83 0.00 33.60 3.46
242 243 8.758715 CAAAAACATCTGATGGTTCTTCTTTTC 58.241 33.333 20.34 0.00 39.78 2.29
243 244 7.712205 CCAAAAACATCTGATGGTTCTTCTTTT 59.288 33.333 20.34 12.63 39.78 2.27
245 246 6.239402 CCCAAAAACATCTGATGGTTCTTCTT 60.239 38.462 20.34 9.01 39.78 2.52
246 247 5.244626 CCCAAAAACATCTGATGGTTCTTCT 59.755 40.000 20.34 3.08 39.78 2.85
247 248 5.473039 CCCAAAAACATCTGATGGTTCTTC 58.527 41.667 20.34 0.00 39.78 2.87
248 249 4.284234 CCCCAAAAACATCTGATGGTTCTT 59.716 41.667 20.34 13.63 39.78 2.52
249 250 3.834231 CCCCAAAAACATCTGATGGTTCT 59.166 43.478 20.34 4.81 39.78 3.01
250 251 3.831911 TCCCCAAAAACATCTGATGGTTC 59.168 43.478 20.34 0.00 39.78 3.62
251 252 3.855668 TCCCCAAAAACATCTGATGGTT 58.144 40.909 20.83 18.04 43.23 3.67
253 254 5.180271 CAATTCCCCAAAAACATCTGATGG 58.820 41.667 20.83 4.28 33.60 3.51
254 255 5.797051 ACAATTCCCCAAAAACATCTGATG 58.203 37.500 15.83 15.83 0.00 3.07
255 256 5.781818 AGACAATTCCCCAAAAACATCTGAT 59.218 36.000 0.00 0.00 0.00 2.90
256 257 5.147032 AGACAATTCCCCAAAAACATCTGA 58.853 37.500 0.00 0.00 0.00 3.27
259 260 6.101650 AGAAGACAATTCCCCAAAAACATC 57.898 37.500 0.00 0.00 0.00 3.06
260 261 6.464322 GGAAGAAGACAATTCCCCAAAAACAT 60.464 38.462 0.00 0.00 39.29 2.71
262 263 5.297547 GGAAGAAGACAATTCCCCAAAAAC 58.702 41.667 0.00 0.00 39.29 2.43
263 264 5.545063 GGAAGAAGACAATTCCCCAAAAA 57.455 39.130 0.00 0.00 39.29 1.94
270 271 3.009584 ACCAGAGGGAAGAAGACAATTCC 59.990 47.826 0.00 0.00 43.60 3.01
271 272 4.257731 GACCAGAGGGAAGAAGACAATTC 58.742 47.826 0.00 0.00 38.05 2.17
273 274 2.234908 CGACCAGAGGGAAGAAGACAAT 59.765 50.000 0.00 0.00 38.05 2.71
274 275 1.618837 CGACCAGAGGGAAGAAGACAA 59.381 52.381 0.00 0.00 38.05 3.18
275 276 1.257743 CGACCAGAGGGAAGAAGACA 58.742 55.000 0.00 0.00 38.05 3.41
276 277 0.533032 CCGACCAGAGGGAAGAAGAC 59.467 60.000 0.00 0.00 38.05 3.01
277 278 1.258445 GCCGACCAGAGGGAAGAAGA 61.258 60.000 0.00 0.00 38.05 2.87
279 280 1.535444 TGCCGACCAGAGGGAAGAA 60.535 57.895 0.00 0.00 38.05 2.52
280 281 1.984570 CTGCCGACCAGAGGGAAGA 60.985 63.158 0.00 0.00 44.64 2.87
282 283 3.706373 GCTGCCGACCAGAGGGAA 61.706 66.667 7.16 0.00 44.64 3.97
285 286 4.767255 GTGGCTGCCGACCAGAGG 62.767 72.222 14.98 0.00 44.64 3.69
286 287 4.767255 GGTGGCTGCCGACCAGAG 62.767 72.222 25.60 0.00 44.64 3.35
297 298 4.101448 GTGGATCGGCAGGTGGCT 62.101 66.667 1.71 0.00 44.01 4.75
299 300 4.489771 GGGTGGATCGGCAGGTGG 62.490 72.222 0.00 0.00 0.00 4.61
300 301 3.047807 ATGGGTGGATCGGCAGGTG 62.048 63.158 0.00 0.00 0.00 4.00
301 302 2.692368 ATGGGTGGATCGGCAGGT 60.692 61.111 0.00 0.00 0.00 4.00
302 303 2.203252 CATGGGTGGATCGGCAGG 60.203 66.667 0.00 0.00 0.00 4.85
303 304 2.903855 GCATGGGTGGATCGGCAG 60.904 66.667 0.00 0.00 0.00 4.85
304 305 4.854924 CGCATGGGTGGATCGGCA 62.855 66.667 0.68 0.00 0.00 5.69
305 306 4.545706 TCGCATGGGTGGATCGGC 62.546 66.667 9.86 0.00 0.00 5.54
306 307 2.280389 CTCGCATGGGTGGATCGG 60.280 66.667 9.86 0.00 0.00 4.18
307 308 2.969238 GCTCGCATGGGTGGATCG 60.969 66.667 9.86 0.00 0.00 3.69
309 310 2.124570 GTGCTCGCATGGGTGGAT 60.125 61.111 9.86 0.00 0.00 3.41
310 311 3.635191 TGTGCTCGCATGGGTGGA 61.635 61.111 9.86 5.77 0.00 4.02
311 312 3.434319 GTGTGCTCGCATGGGTGG 61.434 66.667 9.86 5.52 0.00 4.61
312 313 3.792047 CGTGTGCTCGCATGGGTG 61.792 66.667 9.86 8.56 0.00 4.61
313 314 2.835701 CTACGTGTGCTCGCATGGGT 62.836 60.000 9.86 0.00 0.00 4.51
314 315 2.125713 TACGTGTGCTCGCATGGG 60.126 61.111 2.76 2.76 0.00 4.00
315 316 2.802667 GCTACGTGTGCTCGCATGG 61.803 63.158 0.00 0.00 0.00 3.66
316 317 2.697425 GCTACGTGTGCTCGCATG 59.303 61.111 0.00 1.46 0.00 4.06
317 318 2.880879 CGCTACGTGTGCTCGCAT 60.881 61.111 0.00 0.00 0.00 4.73
336 337 1.884926 GAAGAATCGCCGAGGCAGG 60.885 63.158 15.03 0.00 42.06 4.85
338 339 1.971505 ATGGAAGAATCGCCGAGGCA 61.972 55.000 15.03 1.93 42.06 4.75
339 340 1.224722 GATGGAAGAATCGCCGAGGC 61.225 60.000 3.59 3.59 37.85 4.70
341 342 1.067669 TCAGATGGAAGAATCGCCGAG 59.932 52.381 0.00 0.00 0.00 4.63
342 343 1.111277 TCAGATGGAAGAATCGCCGA 58.889 50.000 0.00 0.00 0.00 5.54
343 344 1.212616 GTCAGATGGAAGAATCGCCG 58.787 55.000 0.00 0.00 0.00 6.46
347 348 2.507471 AGGTGGGTCAGATGGAAGAATC 59.493 50.000 0.00 0.00 0.00 2.52
349 350 1.630369 CAGGTGGGTCAGATGGAAGAA 59.370 52.381 0.00 0.00 0.00 2.52
350 351 1.279496 CAGGTGGGTCAGATGGAAGA 58.721 55.000 0.00 0.00 0.00 2.87
351 352 0.393537 GCAGGTGGGTCAGATGGAAG 60.394 60.000 0.00 0.00 0.00 3.46
353 354 1.229625 AGCAGGTGGGTCAGATGGA 60.230 57.895 0.00 0.00 0.00 3.41
354 355 1.222936 GAGCAGGTGGGTCAGATGG 59.777 63.158 0.00 0.00 43.54 3.51
356 357 0.842030 TTGGAGCAGGTGGGTCAGAT 60.842 55.000 0.00 0.00 45.90 2.90
357 358 1.461268 TTGGAGCAGGTGGGTCAGA 60.461 57.895 0.00 0.00 45.90 3.27
359 360 3.160585 CTTGGAGCAGGTGGGTCA 58.839 61.111 0.00 0.00 45.90 4.02
360 361 2.360475 GCTTGGAGCAGGTGGGTC 60.360 66.667 0.00 0.00 41.89 4.46
369 370 3.930634 AGAGTTTCATTTGCTTGGAGC 57.069 42.857 0.00 0.00 42.82 4.70
370 371 8.950210 TCTTTATAGAGTTTCATTTGCTTGGAG 58.050 33.333 0.00 0.00 0.00 3.86
371 372 8.862325 TCTTTATAGAGTTTCATTTGCTTGGA 57.138 30.769 0.00 0.00 0.00 3.53
385 386 9.780186 GCACCCACTAAAATATCTTTATAGAGT 57.220 33.333 0.00 0.00 32.92 3.24
387 388 9.555727 GTGCACCCACTAAAATATCTTTATAGA 57.444 33.333 5.22 0.00 38.93 1.98
388 389 9.337396 TGTGCACCCACTAAAATATCTTTATAG 57.663 33.333 15.69 0.00 42.54 1.31
389 390 9.860650 ATGTGCACCCACTAAAATATCTTTATA 57.139 29.630 15.69 0.00 42.54 0.98
390 391 8.766994 ATGTGCACCCACTAAAATATCTTTAT 57.233 30.769 15.69 0.00 42.54 1.40
391 392 8.588290 AATGTGCACCCACTAAAATATCTTTA 57.412 30.769 15.69 0.00 42.54 1.85
392 393 7.480760 AATGTGCACCCACTAAAATATCTTT 57.519 32.000 15.69 0.00 42.54 2.52
394 395 7.480760 AAAATGTGCACCCACTAAAATATCT 57.519 32.000 15.69 0.00 42.54 1.98
395 396 8.034804 AGAAAAATGTGCACCCACTAAAATATC 58.965 33.333 15.69 0.00 42.54 1.63
396 397 7.906327 AGAAAAATGTGCACCCACTAAAATAT 58.094 30.769 15.69 0.00 42.54 1.28
398 399 6.173427 AGAAAAATGTGCACCCACTAAAAT 57.827 33.333 15.69 0.00 42.54 1.82
399 400 5.452636 GGAGAAAAATGTGCACCCACTAAAA 60.453 40.000 15.69 0.00 42.54 1.52
400 401 4.038642 GGAGAAAAATGTGCACCCACTAAA 59.961 41.667 15.69 0.00 42.54 1.85
401 402 3.572255 GGAGAAAAATGTGCACCCACTAA 59.428 43.478 15.69 0.00 42.54 2.24
403 404 1.963515 GGAGAAAAATGTGCACCCACT 59.036 47.619 15.69 5.15 42.54 4.00
404 405 1.686052 TGGAGAAAAATGTGCACCCAC 59.314 47.619 15.69 0.05 42.40 4.61
405 406 2.079170 TGGAGAAAAATGTGCACCCA 57.921 45.000 15.69 8.79 0.00 4.51
406 407 3.467374 TTTGGAGAAAAATGTGCACCC 57.533 42.857 15.69 5.95 0.00 4.61
409 410 7.821846 ACTTTACTTTTTGGAGAAAAATGTGCA 59.178 29.630 10.58 0.00 42.75 4.57
410 411 8.116136 CACTTTACTTTTTGGAGAAAAATGTGC 58.884 33.333 10.58 0.00 42.75 4.57
412 413 7.821846 TGCACTTTACTTTTTGGAGAAAAATGT 59.178 29.630 7.11 7.11 44.17 2.71
413 414 8.195617 TGCACTTTACTTTTTGGAGAAAAATG 57.804 30.769 0.00 0.00 39.70 2.32
415 416 8.608844 TTTGCACTTTACTTTTTGGAGAAAAA 57.391 26.923 0.00 0.00 38.47 1.94
416 417 8.663911 CATTTGCACTTTACTTTTTGGAGAAAA 58.336 29.630 0.00 0.00 0.00 2.29
418 419 7.551585 TCATTTGCACTTTACTTTTTGGAGAA 58.448 30.769 0.00 0.00 0.00 2.87
419 420 7.106439 TCATTTGCACTTTACTTTTTGGAGA 57.894 32.000 0.00 0.00 0.00 3.71
420 421 7.769272 TTCATTTGCACTTTACTTTTTGGAG 57.231 32.000 0.00 0.00 0.00 3.86
422 423 8.829612 AGAATTCATTTGCACTTTACTTTTTGG 58.170 29.630 8.44 0.00 0.00 3.28
426 427 9.696917 CCTTAGAATTCATTTGCACTTTACTTT 57.303 29.630 8.44 0.00 0.00 2.66
427 428 9.077885 TCCTTAGAATTCATTTGCACTTTACTT 57.922 29.630 8.44 0.00 0.00 2.24
429 430 9.691362 TTTCCTTAGAATTCATTTGCACTTTAC 57.309 29.630 8.44 0.00 0.00 2.01
431 432 9.783081 ATTTTCCTTAGAATTCATTTGCACTTT 57.217 25.926 8.44 0.00 0.00 2.66
432 433 9.783081 AATTTTCCTTAGAATTCATTTGCACTT 57.217 25.926 8.44 0.00 0.00 3.16
435 436 9.651913 GGTAATTTTCCTTAGAATTCATTTGCA 57.348 29.630 8.44 0.00 0.00 4.08
436 437 9.651913 TGGTAATTTTCCTTAGAATTCATTTGC 57.348 29.630 8.44 0.00 0.00 3.68
439 440 9.875691 GCTTGGTAATTTTCCTTAGAATTCATT 57.124 29.630 8.44 0.00 0.00 2.57
440 441 9.034800 TGCTTGGTAATTTTCCTTAGAATTCAT 57.965 29.630 8.44 0.00 0.00 2.57
441 442 8.415950 TGCTTGGTAATTTTCCTTAGAATTCA 57.584 30.769 8.44 0.00 0.00 2.57
445 446 9.131791 GGATATGCTTGGTAATTTTCCTTAGAA 57.868 33.333 0.00 0.00 0.00 2.10
446 447 7.724061 GGGATATGCTTGGTAATTTTCCTTAGA 59.276 37.037 0.00 0.00 0.00 2.10
447 448 7.039714 GGGGATATGCTTGGTAATTTTCCTTAG 60.040 40.741 0.00 0.00 0.00 2.18
449 450 5.602561 GGGGATATGCTTGGTAATTTTCCTT 59.397 40.000 0.00 0.00 0.00 3.36
450 451 5.103086 AGGGGATATGCTTGGTAATTTTCCT 60.103 40.000 0.00 0.00 0.00 3.36
452 453 7.833285 TTAGGGGATATGCTTGGTAATTTTC 57.167 36.000 0.00 0.00 0.00 2.29
454 455 8.616799 TTTTTAGGGGATATGCTTGGTAATTT 57.383 30.769 0.00 0.00 0.00 1.82
477 478 7.439108 AGGACTGATATGCTAGGTACTTTTT 57.561 36.000 0.00 0.00 41.75 1.94
478 479 8.589338 CATAGGACTGATATGCTAGGTACTTTT 58.411 37.037 0.00 0.00 41.75 2.27
480 481 7.471041 TCATAGGACTGATATGCTAGGTACTT 58.529 38.462 0.00 0.00 33.60 2.24
481 482 7.033782 TCATAGGACTGATATGCTAGGTACT 57.966 40.000 0.00 0.00 35.00 2.73
483 484 7.147828 GCATTCATAGGACTGATATGCTAGGTA 60.148 40.741 0.00 0.00 37.07 3.08
487 5223 6.610075 TGCATTCATAGGACTGATATGCTA 57.390 37.500 11.10 0.00 38.73 3.49
493 5229 5.221986 TGGCTATTGCATTCATAGGACTGAT 60.222 40.000 0.66 0.00 41.91 2.90
509 5245 7.823745 AGGTATTTTCCTATGTTGGCTATTG 57.176 36.000 0.00 0.00 35.87 1.90
515 5251 7.978925 AGATCCTAGGTATTTTCCTATGTTGG 58.021 38.462 9.08 0.00 39.07 3.77
524 5260 8.570068 AGACGATCTAGATCCTAGGTATTTTC 57.430 38.462 23.97 6.59 34.40 2.29
530 5266 7.612633 GGATTTTAGACGATCTAGATCCTAGGT 59.387 40.741 23.97 16.68 38.77 3.08
564 5307 5.394553 GGGTAAGGGCATTGATTCAAAAGAG 60.395 44.000 2.68 0.00 0.00 2.85
578 5321 1.699634 GCATATGAGAGGGTAAGGGCA 59.300 52.381 6.97 0.00 0.00 5.36
602 5345 6.597672 TGCAACGACAAGGAAAATATACAGAT 59.402 34.615 0.00 0.00 0.00 2.90
606 5349 5.455525 GCATGCAACGACAAGGAAAATATAC 59.544 40.000 14.21 0.00 0.00 1.47
607 5350 5.449862 GGCATGCAACGACAAGGAAAATATA 60.450 40.000 21.36 0.00 0.00 0.86
608 5351 4.423732 GCATGCAACGACAAGGAAAATAT 58.576 39.130 14.21 0.00 0.00 1.28
611 5354 1.269517 GGCATGCAACGACAAGGAAAA 60.270 47.619 21.36 0.00 0.00 2.29
616 5359 3.252964 TCGGCATGCAACGACAAG 58.747 55.556 21.36 0.00 33.69 3.16
625 5376 1.470098 AGATTGAAAGTGTCGGCATGC 59.530 47.619 9.90 9.90 0.00 4.06
641 5392 8.802267 GTCTGCCTAAGAAGATGATACTAGATT 58.198 37.037 0.00 0.00 36.40 2.40
646 5397 6.798427 TTGTCTGCCTAAGAAGATGATACT 57.202 37.500 0.00 0.00 36.40 2.12
647 5398 7.600752 GGTATTGTCTGCCTAAGAAGATGATAC 59.399 40.741 0.00 0.00 36.40 2.24
648 5399 7.290014 TGGTATTGTCTGCCTAAGAAGATGATA 59.710 37.037 0.00 0.00 36.40 2.15
680 5436 6.611613 TCTGATCCTTCTTTTTCTCTAGCA 57.388 37.500 0.00 0.00 0.00 3.49
681 5437 6.482973 CCATCTGATCCTTCTTTTTCTCTAGC 59.517 42.308 0.00 0.00 0.00 3.42
682 5438 7.563906 ACCATCTGATCCTTCTTTTTCTCTAG 58.436 38.462 0.00 0.00 0.00 2.43
683 5439 7.502060 ACCATCTGATCCTTCTTTTTCTCTA 57.498 36.000 0.00 0.00 0.00 2.43
684 5440 6.385766 ACCATCTGATCCTTCTTTTTCTCT 57.614 37.500 0.00 0.00 0.00 3.10
685 5441 7.459795 AAACCATCTGATCCTTCTTTTTCTC 57.540 36.000 0.00 0.00 0.00 2.87
686 5442 7.256083 CCAAAACCATCTGATCCTTCTTTTTCT 60.256 37.037 0.00 0.00 0.00 2.52
687 5443 6.870439 CCAAAACCATCTGATCCTTCTTTTTC 59.130 38.462 0.00 0.00 0.00 2.29
688 5444 6.239686 CCCAAAACCATCTGATCCTTCTTTTT 60.240 38.462 0.00 0.00 0.00 1.94
706 5462 4.218635 GGAAGAAGATGAGTTCCCCAAAAC 59.781 45.833 0.00 0.00 34.72 2.43
715 5471 3.107601 TCATCCGGGAAGAAGATGAGTT 58.892 45.455 0.00 0.00 41.03 3.01
734 5495 2.239654 GTCCCAACCTCATTCATCCTCA 59.760 50.000 0.00 0.00 0.00 3.86
740 5501 0.036164 CCACGTCCCAACCTCATTCA 59.964 55.000 0.00 0.00 0.00 2.57
795 5584 2.907917 CGACTAGAGGAGCCCGGG 60.908 72.222 19.09 19.09 0.00 5.73
798 5587 2.442272 TGCCGACTAGAGGAGCCC 60.442 66.667 12.09 0.00 0.00 5.19
936 5735 2.283529 GGGTGGACGAAGCTCCAGA 61.284 63.158 0.00 0.00 38.11 3.86
998 5797 0.751277 TGTGTGAAGCAGGTGGTTGG 60.751 55.000 0.00 0.00 35.69 3.77
1029 5837 6.812998 TCTACTAGTGTTGCTGTTTACTTGT 58.187 36.000 5.39 0.00 34.48 3.16
1030 5838 7.891183 ATCTACTAGTGTTGCTGTTTACTTG 57.109 36.000 5.39 0.00 0.00 3.16
1031 5839 8.904099 AAATCTACTAGTGTTGCTGTTTACTT 57.096 30.769 5.39 0.00 0.00 2.24
1032 5840 7.328737 CGAAATCTACTAGTGTTGCTGTTTACT 59.671 37.037 5.39 0.00 0.00 2.24
1033 5841 7.327761 TCGAAATCTACTAGTGTTGCTGTTTAC 59.672 37.037 5.39 0.00 0.00 2.01
1043 5851 6.207025 ACTTGTCACTCGAAATCTACTAGTGT 59.793 38.462 5.39 0.00 38.88 3.55
1072 5890 1.376424 CTGGTGCTCCATCTTGCGT 60.376 57.895 8.18 0.00 43.43 5.24
1188 9218 3.046087 CAGTGTGTCCCTGCTGCG 61.046 66.667 0.00 0.00 0.00 5.18
1267 11010 2.171725 GCCAGTCGTTCCGGTATGC 61.172 63.158 0.00 0.00 0.00 3.14
1270 11013 1.904865 AGTGCCAGTCGTTCCGGTA 60.905 57.895 0.00 0.00 0.00 4.02
1318 11070 2.568956 CTCCTTCACCTTGTCCATGAGA 59.431 50.000 0.00 0.00 0.00 3.27
1333 11085 0.392327 GTCCAGGCAGCTTCTCCTTC 60.392 60.000 0.00 0.00 0.00 3.46
1382 11134 6.037172 CGGTGGAGTATTATTCTTCAAAGGTG 59.963 42.308 0.00 0.00 0.00 4.00
1418 11171 5.163602 GGTGAACTAGACTCGATCAGTTCAT 60.164 44.000 22.85 5.93 45.98 2.57
1419 11172 4.156190 GGTGAACTAGACTCGATCAGTTCA 59.844 45.833 19.15 19.15 44.38 3.18
1420 11173 4.396790 AGGTGAACTAGACTCGATCAGTTC 59.603 45.833 15.90 15.90 41.26 3.01
1421 11174 4.337145 AGGTGAACTAGACTCGATCAGTT 58.663 43.478 0.00 0.00 34.41 3.16
1422 11175 3.958018 AGGTGAACTAGACTCGATCAGT 58.042 45.455 0.00 0.00 38.45 3.41
1482 11242 6.385649 AACACATGTCCGTGAAAACTTAAT 57.614 33.333 0.00 0.00 39.34 1.40
1505 11268 4.684242 CACGACATAGAGTGTAAACTGCAA 59.316 41.667 0.00 0.00 42.36 4.08
1506 11269 4.234574 CACGACATAGAGTGTAAACTGCA 58.765 43.478 0.00 0.00 42.36 4.41
1507 11270 3.060895 GCACGACATAGAGTGTAAACTGC 59.939 47.826 0.00 0.00 42.36 4.40
1508 11271 4.234574 TGCACGACATAGAGTGTAAACTG 58.765 43.478 0.00 0.00 42.36 3.16
1509 11272 4.514781 TGCACGACATAGAGTGTAAACT 57.485 40.909 0.00 0.00 42.36 2.66
1510 11273 5.585500 TTTGCACGACATAGAGTGTAAAC 57.415 39.130 7.53 0.00 43.97 2.01
1512 11275 6.425417 TGAAATTTGCACGACATAGAGTGTAA 59.575 34.615 0.00 0.00 42.36 2.41
1513 11276 5.929415 TGAAATTTGCACGACATAGAGTGTA 59.071 36.000 0.00 0.00 42.36 2.90
1514 11277 4.754618 TGAAATTTGCACGACATAGAGTGT 59.245 37.500 0.00 0.00 45.83 3.55
1515 11278 5.281693 TGAAATTTGCACGACATAGAGTG 57.718 39.130 0.00 0.00 41.01 3.51
1516 11279 4.393062 CCTGAAATTTGCACGACATAGAGT 59.607 41.667 0.00 0.00 0.00 3.24
1517 11280 4.728882 GCCTGAAATTTGCACGACATAGAG 60.729 45.833 0.00 0.00 0.00 2.43
1518 11281 3.126858 GCCTGAAATTTGCACGACATAGA 59.873 43.478 0.00 0.00 0.00 1.98
1519 11282 3.429085 GCCTGAAATTTGCACGACATAG 58.571 45.455 0.00 0.00 0.00 2.23
1520 11283 2.163412 GGCCTGAAATTTGCACGACATA 59.837 45.455 0.00 0.00 0.00 2.29
1521 11284 1.067635 GGCCTGAAATTTGCACGACAT 60.068 47.619 0.00 0.00 0.00 3.06
1522 11285 0.313672 GGCCTGAAATTTGCACGACA 59.686 50.000 0.00 0.00 0.00 4.35
1523 11286 0.388520 GGGCCTGAAATTTGCACGAC 60.389 55.000 0.84 0.00 0.00 4.34
1524 11287 1.963679 GGGCCTGAAATTTGCACGA 59.036 52.632 0.84 0.00 0.00 4.35
1525 11288 1.444212 CGGGCCTGAAATTTGCACG 60.444 57.895 5.28 8.93 46.18 5.34
1526 11289 0.388520 GACGGGCCTGAAATTTGCAC 60.389 55.000 21.41 0.00 0.00 4.57
1527 11290 1.531739 GGACGGGCCTGAAATTTGCA 61.532 55.000 21.41 0.00 0.00 4.08
1528 11291 1.215382 GGACGGGCCTGAAATTTGC 59.785 57.895 21.41 0.00 0.00 3.68
1529 11292 0.243636 GTGGACGGGCCTGAAATTTG 59.756 55.000 21.41 0.00 37.63 2.32
1530 11293 1.241315 CGTGGACGGGCCTGAAATTT 61.241 55.000 21.41 0.00 37.63 1.82
1531 11294 1.674322 CGTGGACGGGCCTGAAATT 60.674 57.895 21.41 0.00 37.63 1.82
1532 11295 2.046314 CGTGGACGGGCCTGAAAT 60.046 61.111 21.41 0.00 37.63 2.17
1533 11296 3.552384 ACGTGGACGGGCCTGAAA 61.552 61.111 21.41 0.00 44.95 2.69
1534 11297 4.308458 CACGTGGACGGGCCTGAA 62.308 66.667 21.41 0.00 44.95 3.02
1723 11503 2.439156 GCAGTGATGAGGGGTGGC 60.439 66.667 0.00 0.00 0.00 5.01
1789 11579 1.070275 GTGACCGTCCGGGAAGTTT 59.930 57.895 10.91 0.00 39.97 2.66
1952 11742 5.101628 TCAAACTCAAACAGTGAAATGTGC 58.898 37.500 0.00 0.00 35.22 4.57
2054 11844 7.595819 ATTTTGGTCAAATCTGGTCAAACTA 57.404 32.000 0.00 0.00 27.71 2.24
2133 11937 3.297134 ACTGTGGTCAAACAATGGTCT 57.703 42.857 0.00 0.00 0.00 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.