Multiple sequence alignment - TraesCS6D01G332300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G332300 chr6D 100.000 2768 0 0 1 2768 434603301 434606068 0.000000e+00 5112.0
1 TraesCS6D01G332300 chr6D 89.147 129 8 5 1960 2086 473361013 473361137 3.690000e-34 156.0
2 TraesCS6D01G332300 chr6A 94.112 1919 60 21 1 1905 581964157 581966036 0.000000e+00 2868.0
3 TraesCS6D01G332300 chr6A 90.741 216 16 4 2149 2362 581966074 581966287 4.510000e-73 285.0
4 TraesCS6D01G332300 chr6B 92.635 1928 78 28 1 1898 658118236 658120129 0.000000e+00 2715.0
5 TraesCS6D01G332300 chr6B 88.043 368 37 2 2185 2545 658120612 658120979 1.970000e-116 429.0
6 TraesCS6D01G332300 chr5D 81.269 662 98 18 1146 1795 125778288 125777641 1.900000e-141 512.0
7 TraesCS6D01G332300 chr5D 88.000 125 9 4 1960 2081 246301952 246301831 2.870000e-30 143.0
8 TraesCS6D01G332300 chr5D 78.205 156 15 4 746 883 125781042 125780888 6.350000e-12 82.4
9 TraesCS6D01G332300 chr5A 80.945 656 88 17 1146 1777 139893966 139893324 4.140000e-133 484.0
10 TraesCS6D01G332300 chr5B 80.415 674 94 20 1146 1795 138557598 138556939 1.930000e-131 479.0
11 TraesCS6D01G332300 chr7A 80.990 626 89 18 1146 1762 634930993 634930389 1.160000e-128 470.0
12 TraesCS6D01G332300 chr7A 81.218 197 27 9 1894 2086 89037659 89037849 1.720000e-32 150.0
13 TraesCS6D01G332300 chr7D 80.599 634 94 18 1146 1769 549318819 549318205 1.940000e-126 462.0
14 TraesCS6D01G332300 chr7D 80.094 638 94 21 1146 1773 549368929 549368315 7.030000e-121 444.0
15 TraesCS6D01G332300 chr7D 86.923 130 9 6 1960 2087 117242172 117242049 3.720000e-29 139.0
16 TraesCS6D01G332300 chr7D 91.489 47 2 1 781 825 549319192 549319146 2.300000e-06 63.9
17 TraesCS6D01G332300 chr7D 91.489 47 2 1 781 825 549369670 549369624 2.300000e-06 63.9
18 TraesCS6D01G332300 chr1B 89.683 126 9 3 1959 2081 642605848 642605724 1.030000e-34 158.0
19 TraesCS6D01G332300 chr4A 88.430 121 12 1 1962 2080 319821446 319821326 7.990000e-31 145.0
20 TraesCS6D01G332300 chr7B 88.525 122 8 4 1961 2077 77429567 77429447 2.870000e-30 143.0
21 TraesCS6D01G332300 chr1D 88.525 122 8 5 1960 2079 121770807 121770690 2.870000e-30 143.0
22 TraesCS6D01G332300 chr4D 86.364 132 12 6 1960 2087 112721941 112721812 3.720000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G332300 chr6D 434603301 434606068 2767 False 5112.00 5112 100.0000 1 2768 1 chr6D.!!$F1 2767
1 TraesCS6D01G332300 chr6A 581964157 581966287 2130 False 1576.50 2868 92.4265 1 2362 2 chr6A.!!$F1 2361
2 TraesCS6D01G332300 chr6B 658118236 658120979 2743 False 1572.00 2715 90.3390 1 2545 2 chr6B.!!$F1 2544
3 TraesCS6D01G332300 chr5D 125777641 125781042 3401 True 297.20 512 79.7370 746 1795 2 chr5D.!!$R2 1049
4 TraesCS6D01G332300 chr5A 139893324 139893966 642 True 484.00 484 80.9450 1146 1777 1 chr5A.!!$R1 631
5 TraesCS6D01G332300 chr5B 138556939 138557598 659 True 479.00 479 80.4150 1146 1795 1 chr5B.!!$R1 649
6 TraesCS6D01G332300 chr7A 634930389 634930993 604 True 470.00 470 80.9900 1146 1762 1 chr7A.!!$R1 616
7 TraesCS6D01G332300 chr7D 549318205 549319192 987 True 262.95 462 86.0440 781 1769 2 chr7D.!!$R2 988
8 TraesCS6D01G332300 chr7D 549368315 549369670 1355 True 253.95 444 85.7915 781 1773 2 chr7D.!!$R3 992

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
567 573 1.616994 CCATCCCCACTTTCCTTCCAC 60.617 57.143 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2550 5639 0.03601 CCTCAAGCGTCCCTGTTCAT 60.036 55.0 0.0 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 2.496899 AGAATTGGCCGTGAGATGTT 57.503 45.000 0.00 0.00 0.00 2.71
79 80 3.139077 GAGATGTTTGGTCGGTTTGAGT 58.861 45.455 0.00 0.00 0.00 3.41
91 92 7.613585 TGGTCGGTTTGAGTATCTTATGTTTA 58.386 34.615 0.00 0.00 34.92 2.01
131 132 7.545965 ACTTGTATCTATGTGTTTGACTAGTGC 59.454 37.037 0.00 0.00 0.00 4.40
132 133 6.338146 TGTATCTATGTGTTTGACTAGTGCC 58.662 40.000 0.00 0.00 0.00 5.01
139 140 3.883489 GTGTTTGACTAGTGCCTTTTCCT 59.117 43.478 0.00 0.00 0.00 3.36
153 154 5.043903 GCCTTTTCCTTCTTGTTCTTTGTC 58.956 41.667 0.00 0.00 0.00 3.18
171 172 9.477484 TTCTTTGTCTCTCTTATGTTCTTACAC 57.523 33.333 0.00 0.00 37.03 2.90
174 175 7.761038 TGTCTCTCTTATGTTCTTACACTCA 57.239 36.000 0.00 0.00 37.03 3.41
177 178 7.918562 GTCTCTCTTATGTTCTTACACTCATCC 59.081 40.741 0.00 0.00 37.03 3.51
251 252 2.935849 TGGTGCTAGTTATGATGTTGCG 59.064 45.455 0.00 0.00 0.00 4.85
354 359 7.971183 TTTTGTTGAGTAAAAGGCTTTTTGT 57.029 28.000 28.33 16.70 37.12 2.83
360 365 9.791820 GTTGAGTAAAAGGCTTTTTGTTTAGTA 57.208 29.630 28.33 6.97 37.12 1.82
383 388 8.679100 AGTACAGTAAGCTGAGAGTTACTATTG 58.321 37.037 7.18 1.40 45.28 1.90
385 390 7.767261 ACAGTAAGCTGAGAGTTACTATTGAG 58.233 38.462 7.18 0.15 45.28 3.02
389 394 9.505995 GTAAGCTGAGAGTTACTATTGAGTTAC 57.494 37.037 0.00 0.00 37.10 2.50
394 399 7.759465 TGAGAGTTACTATTGAGTTACGAAGG 58.241 38.462 0.00 0.00 39.65 3.46
427 432 6.500684 TGTGACAAGAGGAATAATTTGAGC 57.499 37.500 0.00 0.00 0.00 4.26
506 512 9.346725 GTATATCTTTGCTTTTTCTTGTTCCTG 57.653 33.333 0.00 0.00 0.00 3.86
567 573 1.616994 CCATCCCCACTTTCCTTCCAC 60.617 57.143 0.00 0.00 0.00 4.02
1061 2397 8.834004 TCAACTACCACTAACTATAACCAGAT 57.166 34.615 0.00 0.00 0.00 2.90
1082 2830 8.543774 CCAGATAAAATATATACTGGGAGTGCT 58.456 37.037 0.00 0.00 40.50 4.40
1774 4433 2.379907 ACCACCCTCCAGTGAATGAATT 59.620 45.455 0.00 0.00 40.34 2.17
1777 4436 4.581824 CCACCCTCCAGTGAATGAATTATG 59.418 45.833 0.00 0.00 40.34 1.90
1778 4437 4.037208 CACCCTCCAGTGAATGAATTATGC 59.963 45.833 0.00 0.00 40.34 3.14
1845 4518 4.321745 CGTTTGCTTAGCTTAATTGCACTG 59.678 41.667 5.60 0.00 33.13 3.66
1852 4525 4.243007 AGCTTAATTGCACTGTTGTTCC 57.757 40.909 0.00 0.00 34.99 3.62
1864 4537 5.643777 GCACTGTTGTTCCTGTACTTATGAT 59.356 40.000 0.00 0.00 0.00 2.45
1924 4597 9.621629 TTTTTAAGTCTTGGTAAGTCTCAATCA 57.378 29.630 0.00 0.00 0.00 2.57
1925 4598 9.621629 TTTTAAGTCTTGGTAAGTCTCAATCAA 57.378 29.630 0.00 0.00 0.00 2.57
1926 4599 9.793259 TTTAAGTCTTGGTAAGTCTCAATCAAT 57.207 29.630 0.00 0.00 0.00 2.57
1927 4600 7.913674 AAGTCTTGGTAAGTCTCAATCAATC 57.086 36.000 0.00 0.00 0.00 2.67
1928 4601 7.009179 AGTCTTGGTAAGTCTCAATCAATCA 57.991 36.000 0.00 0.00 0.00 2.57
1929 4602 7.453393 AGTCTTGGTAAGTCTCAATCAATCAA 58.547 34.615 0.00 0.00 0.00 2.57
1930 4603 7.389053 AGTCTTGGTAAGTCTCAATCAATCAAC 59.611 37.037 0.00 0.00 0.00 3.18
1931 4604 7.389053 GTCTTGGTAAGTCTCAATCAATCAACT 59.611 37.037 0.00 0.00 0.00 3.16
1932 4605 7.388776 TCTTGGTAAGTCTCAATCAATCAACTG 59.611 37.037 0.00 0.00 0.00 3.16
1933 4606 6.768483 TGGTAAGTCTCAATCAATCAACTGA 58.232 36.000 0.00 0.00 0.00 3.41
1934 4607 6.875726 TGGTAAGTCTCAATCAATCAACTGAG 59.124 38.462 0.00 0.00 37.28 3.35
1935 4608 7.099764 GGTAAGTCTCAATCAATCAACTGAGA 58.900 38.462 0.00 0.00 41.47 3.27
1938 4611 5.139435 TCTCAATCAATCAACTGAGACGT 57.861 39.130 0.00 0.00 39.43 4.34
1939 4612 6.267496 TCTCAATCAATCAACTGAGACGTA 57.733 37.500 0.00 0.00 39.43 3.57
1940 4613 6.325596 TCTCAATCAATCAACTGAGACGTAG 58.674 40.000 0.00 0.00 39.43 3.51
1941 4614 4.864806 TCAATCAATCAACTGAGACGTAGC 59.135 41.667 0.00 0.00 0.00 3.58
1942 4615 3.934457 TCAATCAACTGAGACGTAGCA 57.066 42.857 0.00 0.00 0.00 3.49
1943 4616 4.251543 TCAATCAACTGAGACGTAGCAA 57.748 40.909 0.00 0.00 0.00 3.91
1944 4617 4.627058 TCAATCAACTGAGACGTAGCAAA 58.373 39.130 0.00 0.00 0.00 3.68
1945 4618 4.686091 TCAATCAACTGAGACGTAGCAAAG 59.314 41.667 0.00 0.00 0.00 2.77
1946 4619 3.728076 TCAACTGAGACGTAGCAAAGT 57.272 42.857 0.00 0.00 0.00 2.66
1947 4620 3.639538 TCAACTGAGACGTAGCAAAGTC 58.360 45.455 0.00 0.00 37.63 3.01
1949 4622 4.051922 CAACTGAGACGTAGCAAAGTCTT 58.948 43.478 8.91 0.00 46.52 3.01
1950 4623 5.009310 TCAACTGAGACGTAGCAAAGTCTTA 59.991 40.000 8.91 5.04 46.52 2.10
1952 4625 5.049398 CTGAGACGTAGCAAAGTCTTAGT 57.951 43.478 14.60 0.00 46.52 2.24
1953 4626 5.449107 TGAGACGTAGCAAAGTCTTAGTT 57.551 39.130 8.91 0.00 46.52 2.24
1954 4627 5.220381 TGAGACGTAGCAAAGTCTTAGTTG 58.780 41.667 8.91 0.00 46.52 3.16
1955 4628 5.009310 TGAGACGTAGCAAAGTCTTAGTTGA 59.991 40.000 8.91 0.00 46.52 3.18
1956 4629 6.026947 AGACGTAGCAAAGTCTTAGTTGAT 57.973 37.500 0.00 0.00 44.46 2.57
1957 4630 5.864474 AGACGTAGCAAAGTCTTAGTTGATG 59.136 40.000 0.00 0.00 44.46 3.07
1958 4631 4.389077 ACGTAGCAAAGTCTTAGTTGATGC 59.611 41.667 0.00 0.00 0.00 3.91
1959 4632 4.627467 CGTAGCAAAGTCTTAGTTGATGCT 59.373 41.667 11.03 11.03 44.17 3.79
1960 4633 5.445142 CGTAGCAAAGTCTTAGTTGATGCTG 60.445 44.000 14.65 0.00 42.17 4.41
1961 4634 4.645535 AGCAAAGTCTTAGTTGATGCTGA 58.354 39.130 6.43 0.00 40.80 4.26
1962 4635 4.694509 AGCAAAGTCTTAGTTGATGCTGAG 59.305 41.667 6.43 0.00 40.80 3.35
1963 4636 4.692625 GCAAAGTCTTAGTTGATGCTGAGA 59.307 41.667 0.00 0.00 0.00 3.27
1964 4637 5.353678 GCAAAGTCTTAGTTGATGCTGAGAT 59.646 40.000 0.00 0.00 34.39 2.75
1965 4638 6.456718 GCAAAGTCTTAGTTGATGCTGAGATC 60.457 42.308 0.00 0.00 34.39 2.75
1966 4639 6.543430 AAGTCTTAGTTGATGCTGAGATCT 57.457 37.500 0.00 0.00 34.39 2.75
1967 4640 6.543430 AGTCTTAGTTGATGCTGAGATCTT 57.457 37.500 0.00 0.00 34.39 2.40
1968 4641 7.652524 AGTCTTAGTTGATGCTGAGATCTTA 57.347 36.000 0.00 0.00 34.39 2.10
1969 4642 7.488322 AGTCTTAGTTGATGCTGAGATCTTAC 58.512 38.462 0.00 0.00 34.39 2.34
1970 4643 7.123397 AGTCTTAGTTGATGCTGAGATCTTACA 59.877 37.037 0.00 0.00 34.39 2.41
1971 4644 7.925483 GTCTTAGTTGATGCTGAGATCTTACAT 59.075 37.037 0.00 0.97 34.39 2.29
1972 4645 8.481314 TCTTAGTTGATGCTGAGATCTTACATT 58.519 33.333 0.00 0.00 0.00 2.71
1973 4646 6.922247 AGTTGATGCTGAGATCTTACATTG 57.078 37.500 0.00 0.00 0.00 2.82
1974 4647 6.647229 AGTTGATGCTGAGATCTTACATTGA 58.353 36.000 0.00 0.00 0.00 2.57
1975 4648 6.762187 AGTTGATGCTGAGATCTTACATTGAG 59.238 38.462 0.00 0.00 0.00 3.02
1976 4649 6.475596 TGATGCTGAGATCTTACATTGAGA 57.524 37.500 0.00 0.00 0.00 3.27
1977 4650 7.063934 TGATGCTGAGATCTTACATTGAGAT 57.936 36.000 0.00 0.00 36.60 2.75
1978 4651 7.506971 TGATGCTGAGATCTTACATTGAGATT 58.493 34.615 0.00 0.00 34.13 2.40
1979 4652 7.656542 TGATGCTGAGATCTTACATTGAGATTC 59.343 37.037 0.00 0.00 34.13 2.52
1980 4653 5.981915 TGCTGAGATCTTACATTGAGATTCG 59.018 40.000 0.00 0.00 34.13 3.34
1981 4654 5.982516 GCTGAGATCTTACATTGAGATTCGT 59.017 40.000 0.00 0.00 34.13 3.85
1982 4655 6.074409 GCTGAGATCTTACATTGAGATTCGTG 60.074 42.308 0.00 0.00 34.13 4.35
1983 4656 7.100458 TGAGATCTTACATTGAGATTCGTGA 57.900 36.000 0.00 0.00 34.13 4.35
1984 4657 7.547227 TGAGATCTTACATTGAGATTCGTGAA 58.453 34.615 0.00 0.00 34.13 3.18
1985 4658 8.034804 TGAGATCTTACATTGAGATTCGTGAAA 58.965 33.333 0.00 0.00 34.13 2.69
1986 4659 8.777865 AGATCTTACATTGAGATTCGTGAAAA 57.222 30.769 0.00 0.00 34.13 2.29
1987 4660 9.219603 AGATCTTACATTGAGATTCGTGAAAAA 57.780 29.630 0.00 0.00 34.13 1.94
2023 4696 6.949352 TTTTTCTTTCTCTCTCTTGCATGT 57.051 33.333 0.00 0.00 0.00 3.21
2024 4697 6.949352 TTTTCTTTCTCTCTCTTGCATGTT 57.051 33.333 0.00 0.00 0.00 2.71
2025 4698 6.949352 TTTCTTTCTCTCTCTTGCATGTTT 57.051 33.333 0.00 0.00 0.00 2.83
2026 4699 5.936686 TCTTTCTCTCTCTTGCATGTTTG 57.063 39.130 0.00 0.00 0.00 2.93
2027 4700 5.371526 TCTTTCTCTCTCTTGCATGTTTGT 58.628 37.500 0.00 0.00 0.00 2.83
2028 4701 5.468072 TCTTTCTCTCTCTTGCATGTTTGTC 59.532 40.000 0.00 0.00 0.00 3.18
2029 4702 3.320626 TCTCTCTCTTGCATGTTTGTCG 58.679 45.455 0.00 0.00 0.00 4.35
2030 4703 1.800586 TCTCTCTTGCATGTTTGTCGC 59.199 47.619 0.00 0.00 0.00 5.19
2031 4704 1.802960 CTCTCTTGCATGTTTGTCGCT 59.197 47.619 0.00 0.00 0.00 4.93
2032 4705 2.221169 TCTCTTGCATGTTTGTCGCTT 58.779 42.857 0.00 0.00 0.00 4.68
2033 4706 2.031769 TCTCTTGCATGTTTGTCGCTTG 60.032 45.455 0.00 0.00 0.00 4.01
2034 4707 1.946081 TCTTGCATGTTTGTCGCTTGA 59.054 42.857 0.00 0.00 0.00 3.02
2035 4708 2.046313 CTTGCATGTTTGTCGCTTGAC 58.954 47.619 0.00 0.00 43.19 3.18
2036 4709 1.308047 TGCATGTTTGTCGCTTGACT 58.692 45.000 0.00 0.00 43.29 3.41
2037 4710 2.488952 TGCATGTTTGTCGCTTGACTA 58.511 42.857 0.00 0.00 43.29 2.59
2038 4711 2.875317 TGCATGTTTGTCGCTTGACTAA 59.125 40.909 0.00 0.00 43.29 2.24
2039 4712 3.058983 TGCATGTTTGTCGCTTGACTAAG 60.059 43.478 0.00 0.00 43.29 2.18
2040 4713 3.186409 GCATGTTTGTCGCTTGACTAAGA 59.814 43.478 0.00 0.00 43.29 2.10
2041 4714 4.702392 CATGTTTGTCGCTTGACTAAGAC 58.298 43.478 0.00 0.00 43.29 3.01
2042 4715 4.054780 TGTTTGTCGCTTGACTAAGACT 57.945 40.909 0.00 0.00 43.29 3.24
2043 4716 4.439057 TGTTTGTCGCTTGACTAAGACTT 58.561 39.130 0.00 0.00 43.29 3.01
2044 4717 4.270084 TGTTTGTCGCTTGACTAAGACTTG 59.730 41.667 0.00 0.00 43.29 3.16
2045 4718 3.026630 TGTCGCTTGACTAAGACTTGG 57.973 47.619 0.00 0.00 43.29 3.61
2046 4719 2.364324 TGTCGCTTGACTAAGACTTGGT 59.636 45.455 3.54 3.54 43.29 3.67
2047 4720 3.181469 TGTCGCTTGACTAAGACTTGGTT 60.181 43.478 5.60 0.00 43.29 3.67
2048 4721 4.038282 TGTCGCTTGACTAAGACTTGGTTA 59.962 41.667 5.60 0.00 43.29 2.85
2049 4722 4.986659 GTCGCTTGACTAAGACTTGGTTAA 59.013 41.667 5.60 7.15 39.61 2.01
2050 4723 5.464389 GTCGCTTGACTAAGACTTGGTTAAA 59.536 40.000 5.60 3.65 39.61 1.52
2051 4724 6.147328 GTCGCTTGACTAAGACTTGGTTAAAT 59.853 38.462 5.60 0.00 39.61 1.40
2052 4725 6.367969 TCGCTTGACTAAGACTTGGTTAAATC 59.632 38.462 5.60 2.78 35.92 2.17
2053 4726 6.369065 CGCTTGACTAAGACTTGGTTAAATCT 59.631 38.462 5.60 0.00 35.92 2.40
2054 4727 7.412020 CGCTTGACTAAGACTTGGTTAAATCTC 60.412 40.741 5.60 0.00 35.92 2.75
2055 4728 7.387948 GCTTGACTAAGACTTGGTTAAATCTCA 59.612 37.037 5.60 0.00 35.92 3.27
2056 4729 8.833231 TTGACTAAGACTTGGTTAAATCTCAG 57.167 34.615 5.60 0.00 0.00 3.35
2057 4730 7.963532 TGACTAAGACTTGGTTAAATCTCAGT 58.036 34.615 5.60 0.00 0.00 3.41
2058 4731 8.088981 TGACTAAGACTTGGTTAAATCTCAGTC 58.911 37.037 5.60 3.04 0.00 3.51
2059 4732 7.091443 ACTAAGACTTGGTTAAATCTCAGTCG 58.909 38.462 0.00 0.00 0.00 4.18
2060 4733 5.723672 AGACTTGGTTAAATCTCAGTCGA 57.276 39.130 0.00 0.00 0.00 4.20
2061 4734 5.471257 AGACTTGGTTAAATCTCAGTCGAC 58.529 41.667 7.70 7.70 0.00 4.20
2062 4735 5.244178 AGACTTGGTTAAATCTCAGTCGACT 59.756 40.000 13.58 13.58 0.00 4.18
2063 4736 5.230942 ACTTGGTTAAATCTCAGTCGACTG 58.769 41.667 34.76 34.76 45.08 3.51
2073 4746 0.736053 CAGTCGACTGAGACCTAGCC 59.264 60.000 36.73 0.00 46.59 3.93
2074 4747 0.328592 AGTCGACTGAGACCTAGCCA 59.671 55.000 19.30 0.00 41.83 4.75
2075 4748 0.452585 GTCGACTGAGACCTAGCCAC 59.547 60.000 8.70 0.00 35.22 5.01
2076 4749 0.037734 TCGACTGAGACCTAGCCACA 59.962 55.000 0.00 0.00 0.00 4.17
2077 4750 0.171455 CGACTGAGACCTAGCCACAC 59.829 60.000 0.00 0.00 0.00 3.82
2078 4751 0.533032 GACTGAGACCTAGCCACACC 59.467 60.000 0.00 0.00 0.00 4.16
2079 4752 0.905337 ACTGAGACCTAGCCACACCC 60.905 60.000 0.00 0.00 0.00 4.61
2080 4753 0.904865 CTGAGACCTAGCCACACCCA 60.905 60.000 0.00 0.00 0.00 4.51
2087 4760 3.694566 GACCTAGCCACACCCATTTTTAG 59.305 47.826 0.00 0.00 0.00 1.85
2114 4787 0.588252 GATCCATGGTACGTGCATGC 59.412 55.000 11.82 11.82 0.00 4.06
2115 4788 0.107263 ATCCATGGTACGTGCATGCA 60.107 50.000 18.46 18.46 0.00 3.96
2120 4793 1.226660 GGTACGTGCATGCAATGGC 60.227 57.895 24.58 13.07 46.86 4.40
2131 4804 3.833706 GCAATGGCTGCGTATCTTC 57.166 52.632 0.00 0.00 42.37 2.87
2132 4805 1.303309 GCAATGGCTGCGTATCTTCT 58.697 50.000 0.00 0.00 42.37 2.85
2133 4806 1.262683 GCAATGGCTGCGTATCTTCTC 59.737 52.381 0.00 0.00 42.37 2.87
2134 4807 2.831333 CAATGGCTGCGTATCTTCTCT 58.169 47.619 0.00 0.00 0.00 3.10
2135 4808 3.800261 GCAATGGCTGCGTATCTTCTCTA 60.800 47.826 0.00 0.00 42.37 2.43
2136 4809 3.932545 ATGGCTGCGTATCTTCTCTAG 57.067 47.619 0.00 0.00 0.00 2.43
2137 4810 2.656002 TGGCTGCGTATCTTCTCTAGT 58.344 47.619 0.00 0.00 0.00 2.57
2138 4811 3.024547 TGGCTGCGTATCTTCTCTAGTT 58.975 45.455 0.00 0.00 0.00 2.24
2139 4812 3.447586 TGGCTGCGTATCTTCTCTAGTTT 59.552 43.478 0.00 0.00 0.00 2.66
2140 4813 4.643334 TGGCTGCGTATCTTCTCTAGTTTA 59.357 41.667 0.00 0.00 0.00 2.01
2141 4814 5.302059 TGGCTGCGTATCTTCTCTAGTTTAT 59.698 40.000 0.00 0.00 0.00 1.40
2142 4815 6.183360 TGGCTGCGTATCTTCTCTAGTTTATT 60.183 38.462 0.00 0.00 0.00 1.40
2143 4816 6.702282 GGCTGCGTATCTTCTCTAGTTTATTT 59.298 38.462 0.00 0.00 0.00 1.40
2144 4817 7.095982 GGCTGCGTATCTTCTCTAGTTTATTTC 60.096 40.741 0.00 0.00 0.00 2.17
2145 4818 7.435488 GCTGCGTATCTTCTCTAGTTTATTTCA 59.565 37.037 0.00 0.00 0.00 2.69
2146 4819 9.469807 CTGCGTATCTTCTCTAGTTTATTTCAT 57.530 33.333 0.00 0.00 0.00 2.57
2173 4846 5.617751 CGTTTGCTAAATCTCAGGTTTCTGG 60.618 44.000 0.00 0.00 41.23 3.86
2249 5331 0.532573 GGTGAGGAGCGACATGAAGA 59.467 55.000 0.00 0.00 0.00 2.87
2250 5332 1.470632 GGTGAGGAGCGACATGAAGAG 60.471 57.143 0.00 0.00 0.00 2.85
2255 5338 1.067565 GGAGCGACATGAAGAGTGTCA 60.068 52.381 0.00 0.00 44.77 3.58
2286 5369 0.313672 GCCAAACCATGAACGAGCAA 59.686 50.000 0.00 0.00 0.00 3.91
2345 5428 4.265206 GGGACGAGAACGGGGATA 57.735 61.111 0.00 0.00 44.46 2.59
2364 5447 1.376812 CAGGGGTTACCGGAGTTGC 60.377 63.158 9.46 0.00 46.96 4.17
2370 5453 1.356938 GTTACCGGAGTTGCTGTAGC 58.643 55.000 9.46 0.00 42.50 3.58
2373 5456 0.320771 ACCGGAGTTGCTGTAGCTTG 60.321 55.000 9.46 0.00 42.66 4.01
2376 5459 0.324943 GGAGTTGCTGTAGCTTGGGA 59.675 55.000 5.38 0.00 42.66 4.37
2378 5461 1.276421 GAGTTGCTGTAGCTTGGGAGA 59.724 52.381 5.38 0.00 42.66 3.71
2380 5463 0.036010 TTGCTGTAGCTTGGGAGAGC 60.036 55.000 5.38 0.00 42.66 4.09
2396 5479 0.250081 GAGCTTTAGAGGGATGGCCG 60.250 60.000 0.00 0.00 33.83 6.13
2413 5496 4.830765 GTGGCGGCGGCTATCACA 62.831 66.667 33.21 10.13 39.81 3.58
2424 5513 1.224592 CTATCACAGTGGGGTGGGC 59.775 63.158 0.00 0.00 39.27 5.36
2442 5531 3.339093 GGGGGTGGGGAGTTGAGG 61.339 72.222 0.00 0.00 0.00 3.86
2447 5536 1.685820 GTGGGGAGTTGAGGGAAGG 59.314 63.158 0.00 0.00 0.00 3.46
2450 5539 2.269241 GGAGTTGAGGGAAGGCCG 59.731 66.667 0.00 0.00 33.83 6.13
2454 5543 3.717294 TTGAGGGAAGGCCGAGGC 61.717 66.667 5.37 5.37 41.06 4.70
2467 5556 3.512516 GAGGCGGCAAGGTGATGC 61.513 66.667 13.08 0.00 45.67 3.91
2485 5574 1.377202 CGTGGTAGCACCTGCCAAT 60.377 57.895 18.90 0.00 46.92 3.16
2516 5605 1.691337 ATGCCGGTGGTTAGGGCTA 60.691 57.895 1.90 0.00 46.97 3.93
2526 5615 1.188863 GTTAGGGCTAGGTCGGAACA 58.811 55.000 0.00 0.00 0.00 3.18
2533 5622 2.573609 CTAGGTCGGAACAAGGGCGG 62.574 65.000 0.00 0.00 0.00 6.13
2536 5625 2.998480 TCGGAACAAGGGCGGCTA 60.998 61.111 9.56 0.00 0.00 3.93
2538 5627 2.349755 GGAACAAGGGCGGCTACA 59.650 61.111 9.56 0.00 0.00 2.74
2545 5634 1.271840 AAGGGCGGCTACATGAGGAA 61.272 55.000 9.56 0.00 0.00 3.36
2546 5635 1.227674 GGGCGGCTACATGAGGAAG 60.228 63.158 9.56 0.00 0.00 3.46
2547 5636 1.686325 GGGCGGCTACATGAGGAAGA 61.686 60.000 9.56 0.00 0.00 2.87
2548 5637 0.178068 GGCGGCTACATGAGGAAGAA 59.822 55.000 0.00 0.00 0.00 2.52
2549 5638 1.576356 GCGGCTACATGAGGAAGAAG 58.424 55.000 0.00 0.00 0.00 2.85
2550 5639 1.137086 GCGGCTACATGAGGAAGAAGA 59.863 52.381 0.00 0.00 0.00 2.87
2551 5640 2.224161 GCGGCTACATGAGGAAGAAGAT 60.224 50.000 0.00 0.00 0.00 2.40
2552 5641 3.388308 CGGCTACATGAGGAAGAAGATG 58.612 50.000 0.00 0.00 0.00 2.90
2553 5642 3.068732 CGGCTACATGAGGAAGAAGATGA 59.931 47.826 0.00 0.00 0.00 2.92
2554 5643 4.442052 CGGCTACATGAGGAAGAAGATGAA 60.442 45.833 0.00 0.00 0.00 2.57
2555 5644 4.813697 GGCTACATGAGGAAGAAGATGAAC 59.186 45.833 0.00 0.00 0.00 3.18
2556 5645 5.423015 GCTACATGAGGAAGAAGATGAACA 58.577 41.667 0.00 0.00 0.00 3.18
2557 5646 5.523188 GCTACATGAGGAAGAAGATGAACAG 59.477 44.000 0.00 0.00 0.00 3.16
2558 5647 4.841422 ACATGAGGAAGAAGATGAACAGG 58.159 43.478 0.00 0.00 0.00 4.00
2559 5648 3.988976 TGAGGAAGAAGATGAACAGGG 57.011 47.619 0.00 0.00 0.00 4.45
2560 5649 3.520696 TGAGGAAGAAGATGAACAGGGA 58.479 45.455 0.00 0.00 0.00 4.20
2561 5650 3.261897 TGAGGAAGAAGATGAACAGGGAC 59.738 47.826 0.00 0.00 0.00 4.46
2562 5651 2.234908 AGGAAGAAGATGAACAGGGACG 59.765 50.000 0.00 0.00 0.00 4.79
2563 5652 2.003301 GAAGAAGATGAACAGGGACGC 58.997 52.381 0.00 0.00 0.00 5.19
2564 5653 1.270907 AGAAGATGAACAGGGACGCT 58.729 50.000 0.00 0.00 0.00 5.07
2565 5654 1.625818 AGAAGATGAACAGGGACGCTT 59.374 47.619 0.00 0.00 0.00 4.68
2566 5655 1.734465 GAAGATGAACAGGGACGCTTG 59.266 52.381 0.00 0.00 0.00 4.01
2567 5656 0.976641 AGATGAACAGGGACGCTTGA 59.023 50.000 0.00 0.00 0.00 3.02
2568 5657 1.066573 AGATGAACAGGGACGCTTGAG 60.067 52.381 0.00 0.00 0.00 3.02
2569 5658 0.036010 ATGAACAGGGACGCTTGAGG 60.036 55.000 0.00 0.00 0.00 3.86
2570 5659 1.118965 TGAACAGGGACGCTTGAGGA 61.119 55.000 0.00 0.00 0.00 3.71
2571 5660 0.390472 GAACAGGGACGCTTGAGGAG 60.390 60.000 0.00 0.00 0.00 3.69
2572 5661 0.832135 AACAGGGACGCTTGAGGAGA 60.832 55.000 0.00 0.00 0.00 3.71
2573 5662 0.832135 ACAGGGACGCTTGAGGAGAA 60.832 55.000 0.00 0.00 0.00 2.87
2574 5663 0.108424 CAGGGACGCTTGAGGAGAAG 60.108 60.000 0.00 0.00 0.00 2.85
2575 5664 0.251832 AGGGACGCTTGAGGAGAAGA 60.252 55.000 0.00 0.00 0.00 2.87
2576 5665 0.608640 GGGACGCTTGAGGAGAAGAA 59.391 55.000 0.00 0.00 0.00 2.52
2577 5666 1.404851 GGGACGCTTGAGGAGAAGAAG 60.405 57.143 0.00 0.00 0.00 2.85
2578 5667 1.355005 GACGCTTGAGGAGAAGAAGC 58.645 55.000 0.00 0.00 39.00 3.86
2579 5668 0.681733 ACGCTTGAGGAGAAGAAGCA 59.318 50.000 0.00 0.00 41.85 3.91
2580 5669 1.070758 ACGCTTGAGGAGAAGAAGCAA 59.929 47.619 0.00 0.00 41.85 3.91
2581 5670 1.462670 CGCTTGAGGAGAAGAAGCAAC 59.537 52.381 0.00 0.00 41.85 4.17
2582 5671 2.498167 GCTTGAGGAGAAGAAGCAACA 58.502 47.619 0.00 0.00 41.48 3.33
2583 5672 2.483491 GCTTGAGGAGAAGAAGCAACAG 59.517 50.000 0.00 0.00 41.48 3.16
2584 5673 2.847327 TGAGGAGAAGAAGCAACAGG 57.153 50.000 0.00 0.00 0.00 4.00
2585 5674 2.329267 TGAGGAGAAGAAGCAACAGGA 58.671 47.619 0.00 0.00 0.00 3.86
2586 5675 2.301296 TGAGGAGAAGAAGCAACAGGAG 59.699 50.000 0.00 0.00 0.00 3.69
2587 5676 1.003003 AGGAGAAGAAGCAACAGGAGC 59.997 52.381 0.00 0.00 0.00 4.70
2588 5677 1.447945 GAGAAGAAGCAACAGGAGCC 58.552 55.000 0.00 0.00 0.00 4.70
2589 5678 0.321122 AGAAGAAGCAACAGGAGCCG 60.321 55.000 0.00 0.00 0.00 5.52
2590 5679 0.603975 GAAGAAGCAACAGGAGCCGT 60.604 55.000 0.00 0.00 0.00 5.68
2591 5680 0.179018 AAGAAGCAACAGGAGCCGTT 60.179 50.000 0.00 0.00 0.00 4.44
2592 5681 0.886490 AGAAGCAACAGGAGCCGTTG 60.886 55.000 15.17 15.17 45.25 4.10
2593 5682 1.856265 GAAGCAACAGGAGCCGTTGG 61.856 60.000 18.63 7.35 43.19 3.77
2594 5683 2.281484 GCAACAGGAGCCGTTGGA 60.281 61.111 18.63 0.00 43.19 3.53
2595 5684 2.617274 GCAACAGGAGCCGTTGGAC 61.617 63.158 18.63 6.37 43.19 4.02
2596 5685 2.030562 AACAGGAGCCGTTGGACG 59.969 61.111 0.00 0.00 42.11 4.79
2597 5686 2.803817 AACAGGAGCCGTTGGACGT 61.804 57.895 0.00 0.00 40.58 4.34
2598 5687 2.432628 CAGGAGCCGTTGGACGTC 60.433 66.667 7.13 7.13 40.58 4.34
2599 5688 4.052229 AGGAGCCGTTGGACGTCG 62.052 66.667 9.92 0.00 40.58 5.12
2600 5689 4.047059 GGAGCCGTTGGACGTCGA 62.047 66.667 9.92 1.86 40.58 4.20
2601 5690 2.804090 GAGCCGTTGGACGTCGAC 60.804 66.667 9.92 5.18 40.58 4.20
2602 5691 4.353437 AGCCGTTGGACGTCGACC 62.353 66.667 10.58 6.81 40.58 4.79
2603 5692 4.353437 GCCGTTGGACGTCGACCT 62.353 66.667 14.67 0.00 40.58 3.85
2604 5693 2.981560 GCCGTTGGACGTCGACCTA 61.982 63.158 14.67 4.55 40.58 3.08
2605 5694 1.580942 CCGTTGGACGTCGACCTAA 59.419 57.895 14.67 0.00 40.58 2.69
2606 5695 0.171903 CCGTTGGACGTCGACCTAAT 59.828 55.000 14.67 0.00 40.58 1.73
2607 5696 1.265568 CGTTGGACGTCGACCTAATG 58.734 55.000 14.67 2.99 36.74 1.90
2608 5697 1.636988 GTTGGACGTCGACCTAATGG 58.363 55.000 14.67 0.00 39.83 3.16
2609 5698 0.108520 TTGGACGTCGACCTAATGGC 60.109 55.000 14.67 0.00 36.63 4.40
2610 5699 1.588139 GGACGTCGACCTAATGGCG 60.588 63.158 10.58 0.00 36.63 5.69
2611 5700 1.588139 GACGTCGACCTAATGGCGG 60.588 63.158 10.58 0.00 36.63 6.13
2612 5701 2.960129 CGTCGACCTAATGGCGGC 60.960 66.667 10.58 0.00 36.63 6.53
2613 5702 2.588034 GTCGACCTAATGGCGGCC 60.588 66.667 13.32 13.32 36.63 6.13
2614 5703 3.078196 TCGACCTAATGGCGGCCA 61.078 61.111 26.11 26.11 38.19 5.36
2615 5704 2.588877 CGACCTAATGGCGGCCAG 60.589 66.667 27.62 15.76 36.75 4.85
2616 5705 2.203209 GACCTAATGGCGGCCAGG 60.203 66.667 27.62 23.84 36.75 4.45
2617 5706 2.690881 ACCTAATGGCGGCCAGGA 60.691 61.111 27.08 16.96 36.75 3.86
2618 5707 2.265467 GACCTAATGGCGGCCAGGAA 62.265 60.000 27.08 14.82 36.75 3.36
2619 5708 1.077068 CCTAATGGCGGCCAGGAAA 60.077 57.895 27.62 11.08 36.75 3.13
2620 5709 0.682855 CCTAATGGCGGCCAGGAAAA 60.683 55.000 27.62 9.32 36.75 2.29
2621 5710 1.181786 CTAATGGCGGCCAGGAAAAA 58.818 50.000 27.62 0.97 36.75 1.94
2665 5754 5.652994 TTTTGAAGTTGTTTAGGTGTGCT 57.347 34.783 0.00 0.00 0.00 4.40
2666 5755 5.652994 TTTGAAGTTGTTTAGGTGTGCTT 57.347 34.783 0.00 0.00 0.00 3.91
2667 5756 5.652994 TTGAAGTTGTTTAGGTGTGCTTT 57.347 34.783 0.00 0.00 0.00 3.51
2668 5757 5.652994 TGAAGTTGTTTAGGTGTGCTTTT 57.347 34.783 0.00 0.00 0.00 2.27
2669 5758 6.031751 TGAAGTTGTTTAGGTGTGCTTTTT 57.968 33.333 0.00 0.00 0.00 1.94
2693 5782 8.641499 TTTGTAAAACACTCTAAAATTGCAGG 57.359 30.769 0.00 0.00 0.00 4.85
2694 5783 6.212955 TGTAAAACACTCTAAAATTGCAGGC 58.787 36.000 0.00 0.00 0.00 4.85
2695 5784 4.935352 AAACACTCTAAAATTGCAGGCA 57.065 36.364 0.00 0.00 0.00 4.75
2696 5785 5.473066 AAACACTCTAAAATTGCAGGCAT 57.527 34.783 0.00 0.00 0.00 4.40
2697 5786 5.473066 AACACTCTAAAATTGCAGGCATT 57.527 34.783 0.00 0.00 0.00 3.56
2698 5787 5.064441 ACACTCTAAAATTGCAGGCATTC 57.936 39.130 0.00 0.00 0.00 2.67
2699 5788 4.523943 ACACTCTAAAATTGCAGGCATTCA 59.476 37.500 0.00 0.00 0.00 2.57
2700 5789 4.860907 CACTCTAAAATTGCAGGCATTCAC 59.139 41.667 0.00 0.00 0.00 3.18
2701 5790 4.082026 ACTCTAAAATTGCAGGCATTCACC 60.082 41.667 0.00 0.00 0.00 4.02
2702 5791 4.088634 TCTAAAATTGCAGGCATTCACCT 58.911 39.130 0.00 0.00 42.30 4.00
2703 5792 3.775261 AAAATTGCAGGCATTCACCTT 57.225 38.095 0.00 0.00 38.26 3.50
2704 5793 4.888326 AAAATTGCAGGCATTCACCTTA 57.112 36.364 0.00 0.00 38.26 2.69
2705 5794 5.425196 AAAATTGCAGGCATTCACCTTAT 57.575 34.783 0.00 0.00 38.26 1.73
2706 5795 4.395959 AATTGCAGGCATTCACCTTATG 57.604 40.909 0.00 0.00 38.26 1.90
2707 5796 2.804986 TGCAGGCATTCACCTTATGA 57.195 45.000 0.00 0.00 38.26 2.15
2708 5797 3.301794 TGCAGGCATTCACCTTATGAT 57.698 42.857 0.00 0.00 38.26 2.45
2709 5798 3.216800 TGCAGGCATTCACCTTATGATC 58.783 45.455 0.00 0.00 38.26 2.92
2710 5799 3.216800 GCAGGCATTCACCTTATGATCA 58.783 45.455 0.00 0.00 38.26 2.92
2711 5800 3.004106 GCAGGCATTCACCTTATGATCAC 59.996 47.826 0.00 0.00 38.26 3.06
2712 5801 4.201657 CAGGCATTCACCTTATGATCACA 58.798 43.478 0.00 0.00 38.26 3.58
2713 5802 4.036027 CAGGCATTCACCTTATGATCACAC 59.964 45.833 0.00 0.00 38.26 3.82
2714 5803 3.947196 GGCATTCACCTTATGATCACACA 59.053 43.478 0.00 0.00 37.11 3.72
2715 5804 4.201950 GGCATTCACCTTATGATCACACAC 60.202 45.833 0.00 0.00 37.11 3.82
2716 5805 4.395854 GCATTCACCTTATGATCACACACA 59.604 41.667 0.00 0.00 37.11 3.72
2717 5806 5.066893 GCATTCACCTTATGATCACACACAT 59.933 40.000 0.00 0.00 37.11 3.21
2718 5807 6.492254 CATTCACCTTATGATCACACACATG 58.508 40.000 0.00 0.00 37.11 3.21
2719 5808 3.940852 TCACCTTATGATCACACACATGC 59.059 43.478 0.00 0.00 29.99 4.06
2720 5809 3.690628 CACCTTATGATCACACACATGCA 59.309 43.478 0.00 0.00 0.00 3.96
2721 5810 4.337274 CACCTTATGATCACACACATGCAT 59.663 41.667 0.00 0.00 0.00 3.96
2722 5811 5.528320 CACCTTATGATCACACACATGCATA 59.472 40.000 0.00 0.00 0.00 3.14
2723 5812 5.528690 ACCTTATGATCACACACATGCATAC 59.471 40.000 0.00 0.00 0.00 2.39
2724 5813 5.049198 CCTTATGATCACACACATGCATACC 60.049 44.000 0.00 0.00 0.00 2.73
2725 5814 3.347077 TGATCACACACATGCATACCA 57.653 42.857 0.00 0.00 0.00 3.25
2726 5815 3.888583 TGATCACACACATGCATACCAT 58.111 40.909 0.00 0.00 33.39 3.55
2727 5816 5.033589 TGATCACACACATGCATACCATA 57.966 39.130 0.00 0.00 31.47 2.74
2728 5817 4.815846 TGATCACACACATGCATACCATAC 59.184 41.667 0.00 0.00 31.47 2.39
2729 5818 4.486125 TCACACACATGCATACCATACT 57.514 40.909 0.00 0.00 31.47 2.12
2730 5819 4.441792 TCACACACATGCATACCATACTC 58.558 43.478 0.00 0.00 31.47 2.59
2731 5820 3.561310 CACACACATGCATACCATACTCC 59.439 47.826 0.00 0.00 31.47 3.85
2732 5821 3.455910 ACACACATGCATACCATACTCCT 59.544 43.478 0.00 0.00 31.47 3.69
2733 5822 4.653801 ACACACATGCATACCATACTCCTA 59.346 41.667 0.00 0.00 31.47 2.94
2734 5823 5.307976 ACACACATGCATACCATACTCCTAT 59.692 40.000 0.00 0.00 31.47 2.57
2735 5824 5.640783 CACACATGCATACCATACTCCTATG 59.359 44.000 0.00 0.00 31.47 2.23
2736 5825 5.543790 ACACATGCATACCATACTCCTATGA 59.456 40.000 0.00 0.00 32.66 2.15
2737 5826 6.104665 CACATGCATACCATACTCCTATGAG 58.895 44.000 0.00 0.00 37.01 2.90
2750 5839 3.680490 TCCTATGAGTATCTCTGAGCCG 58.320 50.000 0.00 0.00 34.92 5.52
2751 5840 3.328050 TCCTATGAGTATCTCTGAGCCGA 59.672 47.826 0.00 0.00 34.92 5.54
2752 5841 3.438781 CCTATGAGTATCTCTGAGCCGAC 59.561 52.174 0.00 0.00 34.92 4.79
2753 5842 2.420058 TGAGTATCTCTGAGCCGACA 57.580 50.000 0.00 0.00 34.92 4.35
2754 5843 2.017782 TGAGTATCTCTGAGCCGACAC 58.982 52.381 0.00 0.00 34.92 3.67
2755 5844 2.017782 GAGTATCTCTGAGCCGACACA 58.982 52.381 0.00 0.00 0.00 3.72
2756 5845 2.423892 GAGTATCTCTGAGCCGACACAA 59.576 50.000 0.00 0.00 0.00 3.33
2757 5846 2.164624 AGTATCTCTGAGCCGACACAAC 59.835 50.000 0.00 0.00 0.00 3.32
2758 5847 0.969149 ATCTCTGAGCCGACACAACA 59.031 50.000 0.00 0.00 0.00 3.33
2759 5848 0.969149 TCTCTGAGCCGACACAACAT 59.031 50.000 0.00 0.00 0.00 2.71
2760 5849 1.344438 TCTCTGAGCCGACACAACATT 59.656 47.619 0.00 0.00 0.00 2.71
2761 5850 2.146342 CTCTGAGCCGACACAACATTT 58.854 47.619 0.00 0.00 0.00 2.32
2762 5851 2.549754 CTCTGAGCCGACACAACATTTT 59.450 45.455 0.00 0.00 0.00 1.82
2763 5852 2.290367 TCTGAGCCGACACAACATTTTG 59.710 45.455 0.00 0.00 38.83 2.44
2764 5853 2.290367 CTGAGCCGACACAACATTTTGA 59.710 45.455 0.00 0.00 36.48 2.69
2765 5854 2.290367 TGAGCCGACACAACATTTTGAG 59.710 45.455 0.00 0.00 36.48 3.02
2766 5855 2.548057 GAGCCGACACAACATTTTGAGA 59.452 45.455 0.00 0.00 36.48 3.27
2767 5856 3.149196 AGCCGACACAACATTTTGAGAT 58.851 40.909 0.00 0.00 36.48 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 5.624159 ACAATTGATCCAACAACTCTGAGA 58.376 37.500 13.59 0.00 32.50 3.27
14 15 5.880901 AGGTACAATTGATCCAACAACTCT 58.119 37.500 13.59 0.00 32.50 3.24
65 66 6.045072 ACATAAGATACTCAAACCGACCAA 57.955 37.500 0.00 0.00 0.00 3.67
131 132 6.319911 AGAGACAAAGAACAAGAAGGAAAAGG 59.680 38.462 0.00 0.00 0.00 3.11
132 133 7.281999 AGAGAGACAAAGAACAAGAAGGAAAAG 59.718 37.037 0.00 0.00 0.00 2.27
139 140 8.964476 AACATAAGAGAGACAAAGAACAAGAA 57.036 30.769 0.00 0.00 0.00 2.52
153 154 7.704472 GTGGATGAGTGTAAGAACATAAGAGAG 59.296 40.741 0.00 0.00 38.08 3.20
171 172 5.710513 TTCACAAATTGAAGGTGGATGAG 57.289 39.130 0.00 0.00 39.45 2.90
174 175 5.336690 CCGATTTCACAAATTGAAGGTGGAT 60.337 40.000 0.00 0.00 45.22 3.41
177 178 4.917415 GTCCGATTTCACAAATTGAAGGTG 59.083 41.667 0.00 0.00 45.22 4.00
261 263 5.309806 GGGATGTGAGGGTAGGTGTTATTAT 59.690 44.000 0.00 0.00 0.00 1.28
303 305 6.824305 ATCAACTAAGATGTGGGAAAGTTG 57.176 37.500 6.67 6.67 43.15 3.16
354 359 8.632906 AGTAACTCTCAGCTTACTGTACTAAA 57.367 34.615 0.00 0.00 44.77 1.85
360 365 7.394923 ACTCAATAGTAACTCTCAGCTTACTGT 59.605 37.037 4.16 0.00 38.54 3.55
383 388 8.328864 GTCACAATAATCAATCCTTCGTAACTC 58.671 37.037 0.00 0.00 0.00 3.01
385 390 7.970384 TGTCACAATAATCAATCCTTCGTAAC 58.030 34.615 0.00 0.00 0.00 2.50
389 394 7.307493 TCTTGTCACAATAATCAATCCTTCG 57.693 36.000 0.00 0.00 0.00 3.79
427 432 2.025767 CTCACTCATCCTCAGCCCCG 62.026 65.000 0.00 0.00 0.00 5.73
506 512 4.506654 GTGAAGCATGAATGAATTGCCATC 59.493 41.667 0.00 0.00 37.07 3.51
567 573 3.324930 TCTGCCCTCTGCTGGTGG 61.325 66.667 0.00 0.00 42.00 4.61
821 852 3.298958 GGAGACGTCCATGGCTGA 58.701 61.111 13.01 0.00 43.31 4.26
1061 2397 8.142485 GGGTAGCACTCCCAGTATATATTTTA 57.858 38.462 6.09 0.00 44.05 1.52
1076 2412 5.186198 AGATAATGTTTGTGGGTAGCACTC 58.814 41.667 0.00 0.00 0.00 3.51
1082 2830 5.045942 TGAGCTGAGATAATGTTTGTGGGTA 60.046 40.000 0.00 0.00 0.00 3.69
1093 2847 2.544685 GTGCGTGTGAGCTGAGATAAT 58.455 47.619 0.00 0.00 38.13 1.28
1774 4433 4.252073 TGATGCATACATATGTGCGCATA 58.748 39.130 30.88 21.52 45.45 3.14
1777 4436 2.481568 ACTGATGCATACATATGTGCGC 59.518 45.455 18.81 19.02 45.45 6.09
1778 4437 3.181537 CGACTGATGCATACATATGTGCG 60.182 47.826 18.81 9.98 45.45 5.34
1825 4496 5.221224 ACAACAGTGCAATTAAGCTAAGCAA 60.221 36.000 0.00 0.00 36.91 3.91
1828 4501 5.858581 GGAACAACAGTGCAATTAAGCTAAG 59.141 40.000 0.00 0.00 34.99 2.18
1898 4571 9.621629 TGATTGAGACTTACCAAGACTTAAAAA 57.378 29.630 0.00 0.00 33.98 1.94
1899 4572 9.621629 TTGATTGAGACTTACCAAGACTTAAAA 57.378 29.630 0.00 0.00 33.98 1.52
1900 4573 9.793259 ATTGATTGAGACTTACCAAGACTTAAA 57.207 29.630 0.00 0.00 33.98 1.52
1901 4574 9.436957 GATTGATTGAGACTTACCAAGACTTAA 57.563 33.333 0.00 0.00 34.54 1.85
1902 4575 8.593679 TGATTGATTGAGACTTACCAAGACTTA 58.406 33.333 0.00 0.00 33.75 2.24
1903 4576 7.453393 TGATTGATTGAGACTTACCAAGACTT 58.547 34.615 0.00 0.00 33.75 3.01
1904 4577 7.009179 TGATTGATTGAGACTTACCAAGACT 57.991 36.000 0.00 0.00 36.25 3.24
1905 4578 7.389053 AGTTGATTGATTGAGACTTACCAAGAC 59.611 37.037 0.00 0.00 0.00 3.01
1906 4579 7.388776 CAGTTGATTGATTGAGACTTACCAAGA 59.611 37.037 0.00 0.00 0.00 3.02
1907 4580 7.388776 TCAGTTGATTGATTGAGACTTACCAAG 59.611 37.037 0.00 0.00 0.00 3.61
1908 4581 7.223584 TCAGTTGATTGATTGAGACTTACCAA 58.776 34.615 0.00 0.00 0.00 3.67
1909 4582 6.768483 TCAGTTGATTGATTGAGACTTACCA 58.232 36.000 0.00 0.00 0.00 3.25
1910 4583 7.099764 TCTCAGTTGATTGATTGAGACTTACC 58.900 38.462 0.00 0.00 40.65 2.85
1916 4589 5.139435 ACGTCTCAGTTGATTGATTGAGA 57.861 39.130 0.00 0.00 42.61 3.27
1917 4590 5.005203 GCTACGTCTCAGTTGATTGATTGAG 59.995 44.000 0.00 0.00 38.67 3.02
1918 4591 4.864806 GCTACGTCTCAGTTGATTGATTGA 59.135 41.667 0.00 0.00 0.00 2.57
1919 4592 4.627035 TGCTACGTCTCAGTTGATTGATTG 59.373 41.667 0.00 0.00 0.00 2.67
1920 4593 4.820897 TGCTACGTCTCAGTTGATTGATT 58.179 39.130 0.00 0.00 0.00 2.57
1921 4594 4.456280 TGCTACGTCTCAGTTGATTGAT 57.544 40.909 0.00 0.00 0.00 2.57
1922 4595 3.934457 TGCTACGTCTCAGTTGATTGA 57.066 42.857 0.00 0.00 0.00 2.57
1923 4596 4.449068 ACTTTGCTACGTCTCAGTTGATTG 59.551 41.667 0.00 0.00 0.00 2.67
1924 4597 4.632153 ACTTTGCTACGTCTCAGTTGATT 58.368 39.130 0.00 0.00 0.00 2.57
1925 4598 4.021894 AGACTTTGCTACGTCTCAGTTGAT 60.022 41.667 1.51 0.00 35.72 2.57
1926 4599 3.318275 AGACTTTGCTACGTCTCAGTTGA 59.682 43.478 1.51 0.00 35.72 3.18
1927 4600 3.643763 AGACTTTGCTACGTCTCAGTTG 58.356 45.455 1.51 0.00 35.72 3.16
1928 4601 4.323553 AAGACTTTGCTACGTCTCAGTT 57.676 40.909 7.69 0.00 39.44 3.16
1929 4602 4.519730 ACTAAGACTTTGCTACGTCTCAGT 59.480 41.667 7.69 6.30 39.44 3.41
1930 4603 5.049398 ACTAAGACTTTGCTACGTCTCAG 57.951 43.478 7.69 5.69 39.44 3.35
1931 4604 5.009310 TCAACTAAGACTTTGCTACGTCTCA 59.991 40.000 7.69 0.00 39.44 3.27
1932 4605 5.458891 TCAACTAAGACTTTGCTACGTCTC 58.541 41.667 7.69 0.00 39.44 3.36
1933 4606 5.449107 TCAACTAAGACTTTGCTACGTCT 57.551 39.130 1.51 1.51 41.97 4.18
1934 4607 5.444745 GCATCAACTAAGACTTTGCTACGTC 60.445 44.000 0.00 0.00 0.00 4.34
1935 4608 4.389077 GCATCAACTAAGACTTTGCTACGT 59.611 41.667 0.00 0.00 0.00 3.57
1936 4609 4.627467 AGCATCAACTAAGACTTTGCTACG 59.373 41.667 7.82 0.00 37.21 3.51
1937 4610 5.639506 TCAGCATCAACTAAGACTTTGCTAC 59.360 40.000 8.99 0.00 36.87 3.58
1938 4611 5.793817 TCAGCATCAACTAAGACTTTGCTA 58.206 37.500 8.99 0.00 36.87 3.49
1939 4612 4.645535 TCAGCATCAACTAAGACTTTGCT 58.354 39.130 4.35 4.35 39.38 3.91
1940 4613 4.692625 TCTCAGCATCAACTAAGACTTTGC 59.307 41.667 0.00 0.00 0.00 3.68
1941 4614 6.817641 AGATCTCAGCATCAACTAAGACTTTG 59.182 38.462 0.00 0.00 0.00 2.77
1942 4615 6.945218 AGATCTCAGCATCAACTAAGACTTT 58.055 36.000 0.00 0.00 0.00 2.66
1943 4616 6.543430 AGATCTCAGCATCAACTAAGACTT 57.457 37.500 0.00 0.00 0.00 3.01
1944 4617 6.543430 AAGATCTCAGCATCAACTAAGACT 57.457 37.500 0.00 0.00 0.00 3.24
1945 4618 7.261325 TGTAAGATCTCAGCATCAACTAAGAC 58.739 38.462 0.00 0.00 0.00 3.01
1946 4619 7.410120 TGTAAGATCTCAGCATCAACTAAGA 57.590 36.000 0.00 0.00 0.00 2.10
1947 4620 8.549548 CAATGTAAGATCTCAGCATCAACTAAG 58.450 37.037 0.00 0.00 0.00 2.18
1948 4621 8.260114 TCAATGTAAGATCTCAGCATCAACTAA 58.740 33.333 0.00 0.00 0.00 2.24
1949 4622 7.785033 TCAATGTAAGATCTCAGCATCAACTA 58.215 34.615 0.00 0.00 0.00 2.24
1950 4623 6.647229 TCAATGTAAGATCTCAGCATCAACT 58.353 36.000 0.00 0.00 0.00 3.16
1951 4624 6.760298 TCTCAATGTAAGATCTCAGCATCAAC 59.240 38.462 0.00 0.00 0.00 3.18
1952 4625 6.881570 TCTCAATGTAAGATCTCAGCATCAA 58.118 36.000 0.00 0.00 0.00 2.57
1953 4626 6.475596 TCTCAATGTAAGATCTCAGCATCA 57.524 37.500 0.00 0.00 0.00 3.07
1954 4627 7.148771 CGAATCTCAATGTAAGATCTCAGCATC 60.149 40.741 0.00 0.00 32.29 3.91
1955 4628 6.645827 CGAATCTCAATGTAAGATCTCAGCAT 59.354 38.462 0.00 0.00 32.29 3.79
1956 4629 5.981915 CGAATCTCAATGTAAGATCTCAGCA 59.018 40.000 0.00 0.00 32.29 4.41
1957 4630 5.982516 ACGAATCTCAATGTAAGATCTCAGC 59.017 40.000 0.00 0.00 32.29 4.26
1958 4631 7.199078 TCACGAATCTCAATGTAAGATCTCAG 58.801 38.462 0.00 0.00 32.29 3.35
1959 4632 7.100458 TCACGAATCTCAATGTAAGATCTCA 57.900 36.000 0.00 0.00 32.29 3.27
1960 4633 7.993821 TTCACGAATCTCAATGTAAGATCTC 57.006 36.000 0.00 0.00 32.29 2.75
1961 4634 8.777865 TTTTCACGAATCTCAATGTAAGATCT 57.222 30.769 0.00 0.00 32.29 2.75
2000 4673 6.949352 ACATGCAAGAGAGAGAAAGAAAAA 57.051 33.333 0.00 0.00 0.00 1.94
2001 4674 6.949352 AACATGCAAGAGAGAGAAAGAAAA 57.051 33.333 0.00 0.00 0.00 2.29
2002 4675 6.319658 ACAAACATGCAAGAGAGAGAAAGAAA 59.680 34.615 0.00 0.00 0.00 2.52
2003 4676 5.824624 ACAAACATGCAAGAGAGAGAAAGAA 59.175 36.000 0.00 0.00 0.00 2.52
2004 4677 5.371526 ACAAACATGCAAGAGAGAGAAAGA 58.628 37.500 0.00 0.00 0.00 2.52
2005 4678 5.614231 CGACAAACATGCAAGAGAGAGAAAG 60.614 44.000 0.00 0.00 0.00 2.62
2006 4679 4.212004 CGACAAACATGCAAGAGAGAGAAA 59.788 41.667 0.00 0.00 0.00 2.52
2007 4680 3.742882 CGACAAACATGCAAGAGAGAGAA 59.257 43.478 0.00 0.00 0.00 2.87
2008 4681 3.320626 CGACAAACATGCAAGAGAGAGA 58.679 45.455 0.00 0.00 0.00 3.10
2009 4682 2.159734 GCGACAAACATGCAAGAGAGAG 60.160 50.000 0.00 0.00 0.00 3.20
2010 4683 1.800586 GCGACAAACATGCAAGAGAGA 59.199 47.619 0.00 0.00 0.00 3.10
2011 4684 1.802960 AGCGACAAACATGCAAGAGAG 59.197 47.619 0.00 0.00 0.00 3.20
2012 4685 1.882912 AGCGACAAACATGCAAGAGA 58.117 45.000 0.00 0.00 0.00 3.10
2013 4686 2.031769 TCAAGCGACAAACATGCAAGAG 60.032 45.455 0.00 0.00 0.00 2.85
2014 4687 1.946081 TCAAGCGACAAACATGCAAGA 59.054 42.857 0.00 0.00 0.00 3.02
2015 4688 2.046313 GTCAAGCGACAAACATGCAAG 58.954 47.619 0.00 0.00 42.13 4.01
2016 4689 1.675483 AGTCAAGCGACAAACATGCAA 59.325 42.857 0.00 0.00 45.23 4.08
2017 4690 1.308047 AGTCAAGCGACAAACATGCA 58.692 45.000 0.00 0.00 45.23 3.96
2018 4691 3.186409 TCTTAGTCAAGCGACAAACATGC 59.814 43.478 0.00 0.00 45.23 4.06
2019 4692 4.449068 AGTCTTAGTCAAGCGACAAACATG 59.551 41.667 0.00 0.00 45.23 3.21
2020 4693 4.632153 AGTCTTAGTCAAGCGACAAACAT 58.368 39.130 0.00 0.00 45.23 2.71
2021 4694 4.054780 AGTCTTAGTCAAGCGACAAACA 57.945 40.909 0.00 0.00 45.23 2.83
2022 4695 4.318831 CCAAGTCTTAGTCAAGCGACAAAC 60.319 45.833 0.00 0.00 45.23 2.93
2023 4696 3.807622 CCAAGTCTTAGTCAAGCGACAAA 59.192 43.478 0.00 0.00 45.23 2.83
2024 4697 3.181469 ACCAAGTCTTAGTCAAGCGACAA 60.181 43.478 0.00 0.00 45.23 3.18
2025 4698 2.364324 ACCAAGTCTTAGTCAAGCGACA 59.636 45.455 0.00 0.00 45.23 4.35
2026 4699 3.027974 ACCAAGTCTTAGTCAAGCGAC 57.972 47.619 0.00 0.00 42.95 5.19
2027 4700 3.746045 AACCAAGTCTTAGTCAAGCGA 57.254 42.857 0.00 0.00 0.00 4.93
2028 4701 5.917541 TTTAACCAAGTCTTAGTCAAGCG 57.082 39.130 0.00 0.00 0.00 4.68
2029 4702 7.387948 TGAGATTTAACCAAGTCTTAGTCAAGC 59.612 37.037 0.00 0.00 31.40 4.01
2030 4703 8.833231 TGAGATTTAACCAAGTCTTAGTCAAG 57.167 34.615 0.00 0.00 31.40 3.02
2031 4704 8.429641 ACTGAGATTTAACCAAGTCTTAGTCAA 58.570 33.333 2.74 0.00 40.87 3.18
2032 4705 7.963532 ACTGAGATTTAACCAAGTCTTAGTCA 58.036 34.615 2.74 0.00 40.87 3.41
2033 4706 8.468720 GACTGAGATTTAACCAAGTCTTAGTC 57.531 38.462 14.53 14.53 46.75 2.59
2034 4707 7.039923 TCGACTGAGATTTAACCAAGTCTTAGT 60.040 37.037 6.92 6.92 44.67 2.24
2035 4708 7.273815 GTCGACTGAGATTTAACCAAGTCTTAG 59.726 40.741 8.70 1.73 38.97 2.18
2036 4709 7.039923 AGTCGACTGAGATTTAACCAAGTCTTA 60.040 37.037 19.30 0.00 31.40 2.10
2037 4710 5.927115 GTCGACTGAGATTTAACCAAGTCTT 59.073 40.000 8.70 0.00 31.40 3.01
2038 4711 5.244178 AGTCGACTGAGATTTAACCAAGTCT 59.756 40.000 19.30 0.00 33.74 3.24
2039 4712 5.346281 CAGTCGACTGAGATTTAACCAAGTC 59.654 44.000 36.73 0.00 46.59 3.01
2040 4713 5.230942 CAGTCGACTGAGATTTAACCAAGT 58.769 41.667 36.73 0.00 46.59 3.16
2041 4714 5.769967 CAGTCGACTGAGATTTAACCAAG 57.230 43.478 36.73 7.53 46.59 3.61
2054 4727 0.736053 GGCTAGGTCTCAGTCGACTG 59.264 60.000 34.76 34.76 45.08 3.51
2055 4728 0.328592 TGGCTAGGTCTCAGTCGACT 59.671 55.000 13.58 13.58 34.38 4.18
2056 4729 0.452585 GTGGCTAGGTCTCAGTCGAC 59.547 60.000 7.70 7.70 0.00 4.20
2057 4730 0.037734 TGTGGCTAGGTCTCAGTCGA 59.962 55.000 0.00 0.00 0.00 4.20
2058 4731 0.171455 GTGTGGCTAGGTCTCAGTCG 59.829 60.000 0.00 0.00 0.00 4.18
2059 4732 0.533032 GGTGTGGCTAGGTCTCAGTC 59.467 60.000 0.00 0.00 0.00 3.51
2060 4733 0.905337 GGGTGTGGCTAGGTCTCAGT 60.905 60.000 0.00 0.00 0.00 3.41
2061 4734 0.904865 TGGGTGTGGCTAGGTCTCAG 60.905 60.000 0.00 0.00 0.00 3.35
2062 4735 0.252696 ATGGGTGTGGCTAGGTCTCA 60.253 55.000 0.00 0.00 0.00 3.27
2063 4736 0.912486 AATGGGTGTGGCTAGGTCTC 59.088 55.000 0.00 0.00 0.00 3.36
2064 4737 1.372501 AAATGGGTGTGGCTAGGTCT 58.627 50.000 0.00 0.00 0.00 3.85
2065 4738 2.215942 AAAATGGGTGTGGCTAGGTC 57.784 50.000 0.00 0.00 0.00 3.85
2066 4739 2.694616 AAAAATGGGTGTGGCTAGGT 57.305 45.000 0.00 0.00 0.00 3.08
2067 4740 3.947834 CTCTAAAAATGGGTGTGGCTAGG 59.052 47.826 0.00 0.00 0.00 3.02
2068 4741 3.947834 CCTCTAAAAATGGGTGTGGCTAG 59.052 47.826 0.00 0.00 0.00 3.42
2069 4742 3.589735 TCCTCTAAAAATGGGTGTGGCTA 59.410 43.478 0.00 0.00 0.00 3.93
2070 4743 2.378547 TCCTCTAAAAATGGGTGTGGCT 59.621 45.455 0.00 0.00 0.00 4.75
2071 4744 2.755103 CTCCTCTAAAAATGGGTGTGGC 59.245 50.000 0.00 0.00 0.00 5.01
2072 4745 4.301072 TCTCCTCTAAAAATGGGTGTGG 57.699 45.455 0.00 0.00 0.00 4.17
2073 4746 5.560724 TCTTCTCCTCTAAAAATGGGTGTG 58.439 41.667 0.00 0.00 0.00 3.82
2074 4747 5.843019 TCTTCTCCTCTAAAAATGGGTGT 57.157 39.130 0.00 0.00 0.00 4.16
2075 4748 5.825151 GGATCTTCTCCTCTAAAAATGGGTG 59.175 44.000 0.00 0.00 41.29 4.61
2076 4749 5.492524 TGGATCTTCTCCTCTAAAAATGGGT 59.507 40.000 0.00 0.00 45.21 4.51
2077 4750 6.006275 TGGATCTTCTCCTCTAAAAATGGG 57.994 41.667 0.00 0.00 45.21 4.00
2078 4751 6.489361 CCATGGATCTTCTCCTCTAAAAATGG 59.511 42.308 5.56 0.00 45.21 3.16
2079 4752 7.059156 ACCATGGATCTTCTCCTCTAAAAATG 58.941 38.462 21.47 0.00 45.21 2.32
2080 4753 7.218314 ACCATGGATCTTCTCCTCTAAAAAT 57.782 36.000 21.47 0.00 45.21 1.82
2087 4760 2.959707 ACGTACCATGGATCTTCTCCTC 59.040 50.000 21.47 0.00 45.21 3.71
2101 4774 1.932011 GCCATTGCATGCACGTACCA 61.932 55.000 22.58 4.62 37.47 3.25
2104 4777 1.801983 CAGCCATTGCATGCACGTA 59.198 52.632 22.58 6.42 41.13 3.57
2114 4787 2.831333 AGAGAAGATACGCAGCCATTG 58.169 47.619 0.00 0.00 0.00 2.82
2115 4788 3.639094 ACTAGAGAAGATACGCAGCCATT 59.361 43.478 0.00 0.00 0.00 3.16
2120 4793 8.858003 TGAAATAAACTAGAGAAGATACGCAG 57.142 34.615 0.00 0.00 0.00 5.18
2127 4800 9.871238 AAACGCTATGAAATAAACTAGAGAAGA 57.129 29.630 0.00 0.00 0.00 2.87
2128 4801 9.907576 CAAACGCTATGAAATAAACTAGAGAAG 57.092 33.333 0.00 0.00 0.00 2.85
2129 4802 8.388103 GCAAACGCTATGAAATAAACTAGAGAA 58.612 33.333 0.00 0.00 0.00 2.87
2130 4803 7.764443 AGCAAACGCTATGAAATAAACTAGAGA 59.236 33.333 0.00 0.00 38.21 3.10
2131 4804 7.910304 AGCAAACGCTATGAAATAAACTAGAG 58.090 34.615 0.00 0.00 38.21 2.43
2132 4805 7.843490 AGCAAACGCTATGAAATAAACTAGA 57.157 32.000 0.00 0.00 38.21 2.43
2133 4806 9.982291 TTTAGCAAACGCTATGAAATAAACTAG 57.018 29.630 0.00 0.00 41.55 2.57
2135 4808 9.503427 GATTTAGCAAACGCTATGAAATAAACT 57.497 29.630 0.00 0.00 41.55 2.66
2136 4809 9.503427 AGATTTAGCAAACGCTATGAAATAAAC 57.497 29.630 0.00 0.00 41.55 2.01
2137 4810 9.716507 GAGATTTAGCAAACGCTATGAAATAAA 57.283 29.630 0.00 0.00 41.55 1.40
2138 4811 8.888716 TGAGATTTAGCAAACGCTATGAAATAA 58.111 29.630 0.00 0.00 41.55 1.40
2139 4812 8.432110 TGAGATTTAGCAAACGCTATGAAATA 57.568 30.769 0.00 0.00 41.55 1.40
2140 4813 7.320443 TGAGATTTAGCAAACGCTATGAAAT 57.680 32.000 0.00 0.00 41.55 2.17
2141 4814 6.183360 CCTGAGATTTAGCAAACGCTATGAAA 60.183 38.462 0.00 0.00 41.55 2.69
2142 4815 5.294306 CCTGAGATTTAGCAAACGCTATGAA 59.706 40.000 0.00 0.00 41.55 2.57
2143 4816 4.811024 CCTGAGATTTAGCAAACGCTATGA 59.189 41.667 0.00 0.00 41.55 2.15
2144 4817 4.572389 ACCTGAGATTTAGCAAACGCTATG 59.428 41.667 0.00 0.00 41.55 2.23
2145 4818 4.770795 ACCTGAGATTTAGCAAACGCTAT 58.229 39.130 0.00 0.00 41.55 2.97
2146 4819 4.202245 ACCTGAGATTTAGCAAACGCTA 57.798 40.909 0.00 0.00 41.09 4.26
2147 4820 3.059352 ACCTGAGATTTAGCAAACGCT 57.941 42.857 0.00 0.00 43.83 5.07
2179 4852 2.884639 ACAAATGGCTGACGCTAGTTTT 59.115 40.909 0.00 0.00 32.53 2.43
2180 4853 2.226437 CACAAATGGCTGACGCTAGTTT 59.774 45.455 0.00 0.00 32.53 2.66
2182 4855 1.442769 CACAAATGGCTGACGCTAGT 58.557 50.000 0.00 0.00 36.09 2.57
2183 4856 0.097674 GCACAAATGGCTGACGCTAG 59.902 55.000 0.00 0.00 36.09 3.42
2193 5274 1.180029 CTCAGGGGAAGCACAAATGG 58.820 55.000 0.00 0.00 0.00 3.16
2272 5355 0.674895 GGCTCTTGCTCGTTCATGGT 60.675 55.000 0.00 0.00 39.59 3.55
2286 5369 3.314331 CTCACACCCACCGGCTCT 61.314 66.667 0.00 0.00 0.00 4.09
2336 5419 1.206878 GTAACCCCTGTATCCCCGTT 58.793 55.000 0.00 0.00 0.00 4.44
2345 5428 2.063774 CAACTCCGGTAACCCCTGT 58.936 57.895 0.00 0.00 0.00 4.00
2370 5453 2.472029 TCCCTCTAAAGCTCTCCCAAG 58.528 52.381 0.00 0.00 0.00 3.61
2373 5456 1.696884 CCATCCCTCTAAAGCTCTCCC 59.303 57.143 0.00 0.00 0.00 4.30
2376 5459 1.135960 GGCCATCCCTCTAAAGCTCT 58.864 55.000 0.00 0.00 0.00 4.09
2378 5461 0.983378 ACGGCCATCCCTCTAAAGCT 60.983 55.000 2.24 0.00 0.00 3.74
2380 5463 0.179045 CCACGGCCATCCCTCTAAAG 60.179 60.000 2.24 0.00 0.00 1.85
2396 5479 4.830765 TGTGATAGCCGCCGCCAC 62.831 66.667 0.00 0.00 34.57 5.01
2403 5486 1.153369 CACCCCACTGTGATAGCCG 60.153 63.158 9.86 0.00 38.55 5.52
2424 5513 3.717294 CTCAACTCCCCACCCCCG 61.717 72.222 0.00 0.00 0.00 5.73
2450 5539 3.512516 GCATCACCTTGCCGCCTC 61.513 66.667 0.00 0.00 36.60 4.70
2454 5543 3.803082 CCACGCATCACCTTGCCG 61.803 66.667 0.00 0.00 39.52 5.69
2462 5551 1.079197 CAGGTGCTACCACGCATCA 60.079 57.895 7.86 0.00 43.40 3.07
2463 5552 2.464459 GCAGGTGCTACCACGCATC 61.464 63.158 7.86 0.00 41.95 3.91
2467 5556 1.369091 GATTGGCAGGTGCTACCACG 61.369 60.000 1.26 0.00 41.95 4.94
2485 5574 2.192979 GGCATCCATCCCTTGCGA 59.807 61.111 0.00 0.00 37.25 5.10
2495 5584 2.675242 CCCTAACCACCGGCATCCA 61.675 63.158 0.00 0.00 0.00 3.41
2516 5605 4.016706 CCGCCCTTGTTCCGACCT 62.017 66.667 0.00 0.00 0.00 3.85
2526 5615 1.271840 TTCCTCATGTAGCCGCCCTT 61.272 55.000 0.00 0.00 0.00 3.95
2533 5622 5.423015 TGTTCATCTTCTTCCTCATGTAGC 58.577 41.667 0.00 0.00 0.00 3.58
2536 5625 4.324099 CCCTGTTCATCTTCTTCCTCATGT 60.324 45.833 0.00 0.00 0.00 3.21
2538 5627 4.080638 GTCCCTGTTCATCTTCTTCCTCAT 60.081 45.833 0.00 0.00 0.00 2.90
2545 5634 1.270907 AGCGTCCCTGTTCATCTTCT 58.729 50.000 0.00 0.00 0.00 2.85
2546 5635 1.734465 CAAGCGTCCCTGTTCATCTTC 59.266 52.381 0.00 0.00 0.00 2.87
2547 5636 1.347707 TCAAGCGTCCCTGTTCATCTT 59.652 47.619 0.00 0.00 0.00 2.40
2548 5637 0.976641 TCAAGCGTCCCTGTTCATCT 59.023 50.000 0.00 0.00 0.00 2.90
2549 5638 1.363744 CTCAAGCGTCCCTGTTCATC 58.636 55.000 0.00 0.00 0.00 2.92
2550 5639 0.036010 CCTCAAGCGTCCCTGTTCAT 60.036 55.000 0.00 0.00 0.00 2.57
2551 5640 1.118965 TCCTCAAGCGTCCCTGTTCA 61.119 55.000 0.00 0.00 0.00 3.18
2552 5641 0.390472 CTCCTCAAGCGTCCCTGTTC 60.390 60.000 0.00 0.00 0.00 3.18
2553 5642 0.832135 TCTCCTCAAGCGTCCCTGTT 60.832 55.000 0.00 0.00 0.00 3.16
2554 5643 0.832135 TTCTCCTCAAGCGTCCCTGT 60.832 55.000 0.00 0.00 0.00 4.00
2555 5644 0.108424 CTTCTCCTCAAGCGTCCCTG 60.108 60.000 0.00 0.00 0.00 4.45
2556 5645 0.251832 TCTTCTCCTCAAGCGTCCCT 60.252 55.000 0.00 0.00 0.00 4.20
2557 5646 0.608640 TTCTTCTCCTCAAGCGTCCC 59.391 55.000 0.00 0.00 0.00 4.46
2558 5647 2.003196 CTTCTTCTCCTCAAGCGTCC 57.997 55.000 0.00 0.00 0.00 4.79
2559 5648 1.337260 TGCTTCTTCTCCTCAAGCGTC 60.337 52.381 0.00 0.00 44.66 5.19
2560 5649 0.681733 TGCTTCTTCTCCTCAAGCGT 59.318 50.000 0.00 0.00 44.66 5.07
2561 5650 1.462670 GTTGCTTCTTCTCCTCAAGCG 59.537 52.381 0.00 0.00 44.66 4.68
2562 5651 2.483491 CTGTTGCTTCTTCTCCTCAAGC 59.517 50.000 0.00 0.00 42.49 4.01
2563 5652 3.072944 CCTGTTGCTTCTTCTCCTCAAG 58.927 50.000 0.00 0.00 0.00 3.02
2564 5653 2.705658 TCCTGTTGCTTCTTCTCCTCAA 59.294 45.455 0.00 0.00 0.00 3.02
2565 5654 2.301296 CTCCTGTTGCTTCTTCTCCTCA 59.699 50.000 0.00 0.00 0.00 3.86
2566 5655 2.934801 GCTCCTGTTGCTTCTTCTCCTC 60.935 54.545 0.00 0.00 0.00 3.71
2567 5656 1.003003 GCTCCTGTTGCTTCTTCTCCT 59.997 52.381 0.00 0.00 0.00 3.69
2568 5657 1.447945 GCTCCTGTTGCTTCTTCTCC 58.552 55.000 0.00 0.00 0.00 3.71
2569 5658 1.447945 GGCTCCTGTTGCTTCTTCTC 58.552 55.000 0.00 0.00 0.00 2.87
2570 5659 0.321122 CGGCTCCTGTTGCTTCTTCT 60.321 55.000 0.00 0.00 0.00 2.85
2571 5660 0.603975 ACGGCTCCTGTTGCTTCTTC 60.604 55.000 0.00 0.00 0.00 2.87
2572 5661 0.179018 AACGGCTCCTGTTGCTTCTT 60.179 50.000 0.00 0.00 0.00 2.52
2573 5662 0.886490 CAACGGCTCCTGTTGCTTCT 60.886 55.000 4.20 0.00 40.11 2.85
2574 5663 1.576421 CAACGGCTCCTGTTGCTTC 59.424 57.895 4.20 0.00 40.11 3.86
2575 5664 1.898574 CCAACGGCTCCTGTTGCTT 60.899 57.895 10.61 0.00 44.12 3.91
2576 5665 2.281761 CCAACGGCTCCTGTTGCT 60.282 61.111 10.61 0.00 44.12 3.91
2577 5666 2.281484 TCCAACGGCTCCTGTTGC 60.281 61.111 10.61 0.00 44.12 4.17
2578 5667 2.317609 CGTCCAACGGCTCCTGTTG 61.318 63.158 9.39 9.39 44.86 3.33
2579 5668 2.030562 CGTCCAACGGCTCCTGTT 59.969 61.111 0.00 0.00 38.08 3.16
2589 5678 1.636988 CCATTAGGTCGACGTCCAAC 58.363 55.000 15.00 8.56 0.00 3.77
2590 5679 0.108520 GCCATTAGGTCGACGTCCAA 60.109 55.000 15.00 4.94 37.19 3.53
2591 5680 1.514087 GCCATTAGGTCGACGTCCA 59.486 57.895 15.00 3.20 37.19 4.02
2592 5681 1.588139 CGCCATTAGGTCGACGTCC 60.588 63.158 15.00 2.65 36.83 4.79
2593 5682 1.588139 CCGCCATTAGGTCGACGTC 60.588 63.158 15.00 5.18 36.83 4.34
2594 5683 2.493030 CCGCCATTAGGTCGACGT 59.507 61.111 15.89 15.89 36.83 4.34
2595 5684 2.960129 GCCGCCATTAGGTCGACG 60.960 66.667 9.92 0.00 36.83 5.12
2596 5685 2.588034 GGCCGCCATTAGGTCGAC 60.588 66.667 7.13 7.13 36.83 4.20
2597 5686 3.078196 TGGCCGCCATTAGGTCGA 61.078 61.111 8.43 0.00 35.82 4.20
2598 5687 2.588877 CTGGCCGCCATTAGGTCG 60.589 66.667 13.86 0.00 35.82 4.79
2599 5688 2.203209 CCTGGCCGCCATTAGGTC 60.203 66.667 13.86 0.00 37.19 3.85
2600 5689 1.858739 TTTCCTGGCCGCCATTAGGT 61.859 55.000 13.86 0.00 37.19 3.08
2601 5690 0.682855 TTTTCCTGGCCGCCATTAGG 60.683 55.000 13.86 11.33 30.82 2.69
2602 5691 1.181786 TTTTTCCTGGCCGCCATTAG 58.818 50.000 13.86 5.20 30.82 1.73
2603 5692 3.365536 TTTTTCCTGGCCGCCATTA 57.634 47.368 13.86 0.54 30.82 1.90
2604 5693 4.206697 TTTTTCCTGGCCGCCATT 57.793 50.000 13.86 0.00 30.82 3.16
2618 5707 7.481275 AATCGATTTGTGCAATTCACTTTTT 57.519 28.000 4.39 0.00 45.81 1.94
2619 5708 7.481275 AAATCGATTTGTGCAATTCACTTTT 57.519 28.000 22.16 0.00 45.81 2.27
2620 5709 7.481275 AAAATCGATTTGTGCAATTCACTTT 57.519 28.000 23.38 0.32 45.81 2.66
2621 5710 7.481275 AAAAATCGATTTGTGCAATTCACTT 57.519 28.000 23.38 7.12 45.81 3.16
2642 5731 6.031751 AGCACACCTAAACAACTTCAAAAA 57.968 33.333 0.00 0.00 0.00 1.94
2643 5732 5.652994 AGCACACCTAAACAACTTCAAAA 57.347 34.783 0.00 0.00 0.00 2.44
2644 5733 5.652994 AAGCACACCTAAACAACTTCAAA 57.347 34.783 0.00 0.00 0.00 2.69
2645 5734 5.652994 AAAGCACACCTAAACAACTTCAA 57.347 34.783 0.00 0.00 0.00 2.69
2646 5735 5.652994 AAAAGCACACCTAAACAACTTCA 57.347 34.783 0.00 0.00 0.00 3.02
2667 5756 9.092876 CCTGCAATTTTAGAGTGTTTTACAAAA 57.907 29.630 0.00 0.00 0.00 2.44
2668 5757 7.223777 GCCTGCAATTTTAGAGTGTTTTACAAA 59.776 33.333 0.00 0.00 0.00 2.83
2669 5758 6.699642 GCCTGCAATTTTAGAGTGTTTTACAA 59.300 34.615 0.00 0.00 0.00 2.41
2670 5759 6.183360 TGCCTGCAATTTTAGAGTGTTTTACA 60.183 34.615 0.00 0.00 0.00 2.41
2671 5760 6.212955 TGCCTGCAATTTTAGAGTGTTTTAC 58.787 36.000 0.00 0.00 0.00 2.01
2672 5761 6.398234 TGCCTGCAATTTTAGAGTGTTTTA 57.602 33.333 0.00 0.00 0.00 1.52
2673 5762 5.275067 TGCCTGCAATTTTAGAGTGTTTT 57.725 34.783 0.00 0.00 0.00 2.43
2674 5763 4.935352 TGCCTGCAATTTTAGAGTGTTT 57.065 36.364 0.00 0.00 0.00 2.83
2675 5764 5.010922 TGAATGCCTGCAATTTTAGAGTGTT 59.989 36.000 0.00 0.00 0.00 3.32
2676 5765 4.523943 TGAATGCCTGCAATTTTAGAGTGT 59.476 37.500 0.00 0.00 0.00 3.55
2677 5766 4.860907 GTGAATGCCTGCAATTTTAGAGTG 59.139 41.667 0.00 0.00 0.00 3.51
2678 5767 4.082026 GGTGAATGCCTGCAATTTTAGAGT 60.082 41.667 0.00 0.00 0.00 3.24
2679 5768 4.159135 AGGTGAATGCCTGCAATTTTAGAG 59.841 41.667 0.00 0.00 37.50 2.43
2680 5769 4.088634 AGGTGAATGCCTGCAATTTTAGA 58.911 39.130 0.00 0.00 37.50 2.10
2681 5770 4.460948 AGGTGAATGCCTGCAATTTTAG 57.539 40.909 0.00 0.00 37.50 1.85
2682 5771 4.888326 AAGGTGAATGCCTGCAATTTTA 57.112 36.364 0.00 0.00 39.17 1.52
2683 5772 3.775261 AAGGTGAATGCCTGCAATTTT 57.225 38.095 0.00 0.00 39.17 1.82
2684 5773 4.467082 TCATAAGGTGAATGCCTGCAATTT 59.533 37.500 0.00 0.00 39.17 1.82
2685 5774 4.025360 TCATAAGGTGAATGCCTGCAATT 58.975 39.130 0.00 0.00 39.17 2.32
2686 5775 3.634504 TCATAAGGTGAATGCCTGCAAT 58.365 40.909 0.00 0.00 39.17 3.56
2687 5776 3.084536 TCATAAGGTGAATGCCTGCAA 57.915 42.857 0.00 0.00 39.17 4.08
2688 5777 2.804986 TCATAAGGTGAATGCCTGCA 57.195 45.000 0.00 0.00 39.17 4.41
2689 5778 3.004106 GTGATCATAAGGTGAATGCCTGC 59.996 47.826 0.00 0.00 40.97 4.85
2690 5779 4.036027 GTGTGATCATAAGGTGAATGCCTG 59.964 45.833 0.00 0.00 40.97 4.85
2691 5780 4.202441 GTGTGATCATAAGGTGAATGCCT 58.798 43.478 0.00 0.00 40.97 4.75
2692 5781 3.947196 TGTGTGATCATAAGGTGAATGCC 59.053 43.478 0.00 0.00 40.97 4.40
2693 5782 4.395854 TGTGTGTGATCATAAGGTGAATGC 59.604 41.667 0.00 0.00 40.97 3.56
2694 5783 6.492254 CATGTGTGTGATCATAAGGTGAATG 58.508 40.000 0.00 0.00 40.97 2.67
2695 5784 5.066893 GCATGTGTGTGATCATAAGGTGAAT 59.933 40.000 0.00 0.00 40.97 2.57
2696 5785 4.395854 GCATGTGTGTGATCATAAGGTGAA 59.604 41.667 0.00 0.00 40.97 3.18
2697 5786 3.940852 GCATGTGTGTGATCATAAGGTGA 59.059 43.478 0.00 0.00 42.06 4.02
2698 5787 3.690628 TGCATGTGTGTGATCATAAGGTG 59.309 43.478 0.00 0.00 0.00 4.00
2699 5788 3.954200 TGCATGTGTGTGATCATAAGGT 58.046 40.909 0.00 0.00 0.00 3.50
2700 5789 5.049198 GGTATGCATGTGTGTGATCATAAGG 60.049 44.000 10.16 0.00 0.00 2.69
2701 5790 5.528320 TGGTATGCATGTGTGTGATCATAAG 59.472 40.000 10.16 0.00 0.00 1.73
2702 5791 5.435291 TGGTATGCATGTGTGTGATCATAA 58.565 37.500 10.16 0.00 0.00 1.90
2703 5792 5.033589 TGGTATGCATGTGTGTGATCATA 57.966 39.130 10.16 0.00 0.00 2.15
2704 5793 3.888583 TGGTATGCATGTGTGTGATCAT 58.111 40.909 10.16 0.00 0.00 2.45
2705 5794 3.347077 TGGTATGCATGTGTGTGATCA 57.653 42.857 10.16 0.00 0.00 2.92
2706 5795 5.059161 AGTATGGTATGCATGTGTGTGATC 58.941 41.667 10.16 0.00 0.00 2.92
2707 5796 5.039920 AGTATGGTATGCATGTGTGTGAT 57.960 39.130 10.16 0.00 0.00 3.06
2708 5797 4.441792 GAGTATGGTATGCATGTGTGTGA 58.558 43.478 10.16 0.00 0.00 3.58
2709 5798 3.561310 GGAGTATGGTATGCATGTGTGTG 59.439 47.826 10.16 0.00 0.00 3.82
2710 5799 3.455910 AGGAGTATGGTATGCATGTGTGT 59.544 43.478 10.16 0.00 0.00 3.72
2711 5800 4.077300 AGGAGTATGGTATGCATGTGTG 57.923 45.455 10.16 0.00 0.00 3.82
2712 5801 5.543790 TCATAGGAGTATGGTATGCATGTGT 59.456 40.000 10.16 0.00 37.27 3.72
2713 5802 6.041423 TCATAGGAGTATGGTATGCATGTG 57.959 41.667 10.16 0.00 37.27 3.21
2714 5803 6.291648 CTCATAGGAGTATGGTATGCATGT 57.708 41.667 10.16 0.00 37.27 3.21
2728 5817 3.689161 CGGCTCAGAGATACTCATAGGAG 59.311 52.174 2.12 2.12 46.96 3.69
2729 5818 3.328050 TCGGCTCAGAGATACTCATAGGA 59.672 47.826 0.00 0.00 32.06 2.94
2730 5819 3.438781 GTCGGCTCAGAGATACTCATAGG 59.561 52.174 0.00 0.00 32.06 2.57
2731 5820 4.068599 TGTCGGCTCAGAGATACTCATAG 58.931 47.826 0.00 0.00 32.06 2.23
2732 5821 3.815962 GTGTCGGCTCAGAGATACTCATA 59.184 47.826 0.00 0.00 32.06 2.15
2733 5822 2.621055 GTGTCGGCTCAGAGATACTCAT 59.379 50.000 0.00 0.00 32.06 2.90
2734 5823 2.017782 GTGTCGGCTCAGAGATACTCA 58.982 52.381 0.00 0.00 32.06 3.41
2735 5824 2.017782 TGTGTCGGCTCAGAGATACTC 58.982 52.381 0.00 0.00 31.16 2.59
2736 5825 2.130272 TGTGTCGGCTCAGAGATACT 57.870 50.000 0.00 0.00 31.16 2.12
2737 5826 2.094700 TGTTGTGTCGGCTCAGAGATAC 60.095 50.000 0.00 0.00 0.00 2.24
2738 5827 2.167662 TGTTGTGTCGGCTCAGAGATA 58.832 47.619 0.00 0.00 0.00 1.98
2739 5828 0.969149 TGTTGTGTCGGCTCAGAGAT 59.031 50.000 0.00 0.00 0.00 2.75
2740 5829 0.969149 ATGTTGTGTCGGCTCAGAGA 59.031 50.000 0.00 0.00 0.00 3.10
2741 5830 1.800805 AATGTTGTGTCGGCTCAGAG 58.199 50.000 0.00 0.00 0.00 3.35
2742 5831 2.254546 AAATGTTGTGTCGGCTCAGA 57.745 45.000 0.00 0.00 0.00 3.27
2743 5832 2.290367 TCAAAATGTTGTGTCGGCTCAG 59.710 45.455 0.00 0.00 36.07 3.35
2744 5833 2.290367 CTCAAAATGTTGTGTCGGCTCA 59.710 45.455 0.00 0.00 36.07 4.26
2745 5834 2.548057 TCTCAAAATGTTGTGTCGGCTC 59.452 45.455 0.00 0.00 36.07 4.70
2746 5835 2.571212 TCTCAAAATGTTGTGTCGGCT 58.429 42.857 0.00 0.00 36.07 5.52
2747 5836 3.559238 ATCTCAAAATGTTGTGTCGGC 57.441 42.857 0.00 0.00 36.07 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.