Multiple sequence alignment - TraesCS6D01G332100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G332100 chr6D 100.000 6001 0 0 1 6001 434506950 434512950 0.000000e+00 11082.0
1 TraesCS6D01G332100 chr6D 77.201 636 116 23 32 651 434320863 434320241 1.600000e-90 344.0
2 TraesCS6D01G332100 chr6B 97.377 3622 76 12 836 4446 657938169 657941782 0.000000e+00 6144.0
3 TraesCS6D01G332100 chr6B 92.267 750 33 9 5260 5999 657943536 657944270 0.000000e+00 1040.0
4 TraesCS6D01G332100 chr6B 92.426 713 26 9 4557 5267 657941849 657942535 0.000000e+00 992.0
5 TraesCS6D01G332100 chr6B 81.435 641 95 19 37 661 440568633 440569265 2.500000e-138 503.0
6 TraesCS6D01G332100 chr6B 95.050 101 2 3 2315 2412 339371328 339371428 8.050000e-34 156.0
7 TraesCS6D01G332100 chr6A 90.267 2024 124 39 3297 5305 581887685 581889650 0.000000e+00 2579.0
8 TraesCS6D01G332100 chr6A 90.180 1497 91 28 835 2317 581885185 581886639 0.000000e+00 1899.0
9 TraesCS6D01G332100 chr6A 93.314 688 29 5 5327 5999 581891149 581891834 0.000000e+00 1000.0
10 TraesCS6D01G332100 chr6A 88.243 757 50 12 2557 3312 581886953 581887671 0.000000e+00 869.0
11 TraesCS6D01G332100 chr6A 92.453 159 8 2 2400 2558 581886638 581886792 2.180000e-54 224.0
12 TraesCS6D01G332100 chr5D 82.188 640 94 19 32 661 488861118 488860489 3.180000e-147 532.0
13 TraesCS6D01G332100 chr5D 87.589 419 43 7 3573 3984 65901770 65902186 1.510000e-130 477.0
14 TraesCS6D01G332100 chr5D 80.323 620 88 26 51 655 23241956 23242556 7.140000e-119 438.0
15 TraesCS6D01G332100 chr5D 81.232 357 50 12 3589 3943 388099127 388099468 7.660000e-69 272.0
16 TraesCS6D01G332100 chr5D 79.040 396 73 8 4612 5003 388100310 388100699 4.610000e-66 263.0
17 TraesCS6D01G332100 chr5D 79.808 312 35 11 4692 5003 65902946 65903229 1.020000e-47 202.0
18 TraesCS6D01G332100 chr5D 86.755 151 14 4 1113 1258 388097250 388097399 4.810000e-36 163.0
19 TraesCS6D01G332100 chr5D 88.119 101 10 1 4017 4117 65902247 65902345 1.060000e-22 119.0
20 TraesCS6D01G332100 chr5D 92.308 39 1 2 221 258 519215665 519215628 3.000000e-03 54.7
21 TraesCS6D01G332100 chr3D 81.649 643 89 19 37 661 365101727 365102358 1.930000e-139 507.0
22 TraesCS6D01G332100 chr3D 81.347 193 30 6 37 225 541595683 541595493 1.040000e-32 152.0
23 TraesCS6D01G332100 chr3D 86.792 53 7 0 206 258 251959859 251959911 6.500000e-05 60.2
24 TraesCS6D01G332100 chr3D 79.348 92 12 4 207 291 61043956 61043865 2.340000e-04 58.4
25 TraesCS6D01G332100 chr5A 76.581 1012 163 45 4017 5002 55160224 55161187 6.990000e-134 488.0
26 TraesCS6D01G332100 chr5A 84.397 423 48 11 3573 3984 55159745 55160160 3.370000e-107 399.0
27 TraesCS6D01G332100 chr5A 76.959 638 107 27 42 661 536433431 536432816 1.610000e-85 327.0
28 TraesCS6D01G332100 chr5A 81.564 358 47 13 3589 3943 491289599 491289940 1.650000e-70 278.0
29 TraesCS6D01G332100 chr5A 79.188 394 69 8 4612 5003 491290643 491291025 1.660000e-65 261.0
30 TraesCS6D01G332100 chr5A 81.481 216 33 4 2104 2314 55158377 55158590 2.880000e-38 171.0
31 TraesCS6D01G332100 chr5A 87.970 133 15 1 1113 1244 491287571 491287703 8.050000e-34 156.0
32 TraesCS6D01G332100 chr4D 83.523 528 71 11 147 661 75796543 75797067 4.210000e-131 479.0
33 TraesCS6D01G332100 chr4D 78.409 88 17 2 172 258 464181813 464181727 8.400000e-04 56.5
34 TraesCS6D01G332100 chr1D 83.026 542 72 15 131 656 453582835 453582298 1.960000e-129 473.0
35 TraesCS6D01G332100 chr1D 95.833 96 4 0 2309 2404 18163528 18163433 8.050000e-34 156.0
36 TraesCS6D01G332100 chr3A 79.851 670 107 21 37 692 677123939 677123284 1.180000e-126 464.0
37 TraesCS6D01G332100 chr3B 80.259 618 86 27 59 658 475468439 475469038 3.320000e-117 433.0
38 TraesCS6D01G332100 chr3B 96.842 95 3 0 2307 2401 293523518 293523612 6.230000e-35 159.0
39 TraesCS6D01G332100 chr4B 83.617 470 61 10 205 661 108415906 108416372 1.550000e-115 427.0
40 TraesCS6D01G332100 chr2B 80.251 557 86 17 32 583 800264166 800263629 1.210000e-106 398.0
41 TraesCS6D01G332100 chr2B 94.949 99 5 0 2316 2414 653585348 653585446 8.050000e-34 156.0
42 TraesCS6D01G332100 chr2B 93.269 104 6 1 2316 2419 653585433 653585331 1.040000e-32 152.0
43 TraesCS6D01G332100 chr5B 82.885 409 47 11 3231 3623 381075079 381075480 4.450000e-91 346.0
44 TraesCS6D01G332100 chr5B 77.672 524 84 26 3589 4104 466776525 466777023 7.610000e-74 289.0
45 TraesCS6D01G332100 chr5B 84.727 275 34 7 3717 3984 65191581 65191308 9.910000e-68 268.0
46 TraesCS6D01G332100 chr5B 78.934 394 68 11 4612 5003 466777551 466777931 2.780000e-63 254.0
47 TraesCS6D01G332100 chr5B 88.079 151 12 4 1113 1258 466773760 466773909 2.220000e-39 174.0
48 TraesCS6D01G332100 chr5B 75.089 281 46 18 4045 4318 65191221 65190958 6.360000e-20 110.0
49 TraesCS6D01G332100 chr2D 98.913 92 0 1 2316 2406 108622717 108622626 4.810000e-36 163.0
50 TraesCS6D01G332100 chr2D 75.578 303 49 13 32 323 629385600 629385312 6.310000e-25 126.0
51 TraesCS6D01G332100 chr2A 91.892 111 8 1 2293 2402 560782279 560782169 2.900000e-33 154.0
52 TraesCS6D01G332100 chr7D 94.845 97 5 0 2309 2405 426776943 426777039 1.040000e-32 152.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G332100 chr6D 434506950 434512950 6000 False 11082.000000 11082 100.000000 1 6001 1 chr6D.!!$F1 6000
1 TraesCS6D01G332100 chr6D 434320241 434320863 622 True 344.000000 344 77.201000 32 651 1 chr6D.!!$R1 619
2 TraesCS6D01G332100 chr6B 657938169 657944270 6101 False 2725.333333 6144 94.023333 836 5999 3 chr6B.!!$F3 5163
3 TraesCS6D01G332100 chr6B 440568633 440569265 632 False 503.000000 503 81.435000 37 661 1 chr6B.!!$F2 624
4 TraesCS6D01G332100 chr6A 581885185 581891834 6649 False 1314.200000 2579 90.891400 835 5999 5 chr6A.!!$F1 5164
5 TraesCS6D01G332100 chr5D 488860489 488861118 629 True 532.000000 532 82.188000 32 661 1 chr5D.!!$R1 629
6 TraesCS6D01G332100 chr5D 23241956 23242556 600 False 438.000000 438 80.323000 51 655 1 chr5D.!!$F1 604
7 TraesCS6D01G332100 chr5D 65901770 65903229 1459 False 266.000000 477 85.172000 3573 5003 3 chr5D.!!$F2 1430
8 TraesCS6D01G332100 chr5D 388097250 388100699 3449 False 232.666667 272 82.342333 1113 5003 3 chr5D.!!$F3 3890
9 TraesCS6D01G332100 chr3D 365101727 365102358 631 False 507.000000 507 81.649000 37 661 1 chr3D.!!$F2 624
10 TraesCS6D01G332100 chr5A 55158377 55161187 2810 False 352.666667 488 80.819667 2104 5002 3 chr5A.!!$F1 2898
11 TraesCS6D01G332100 chr5A 536432816 536433431 615 True 327.000000 327 76.959000 42 661 1 chr5A.!!$R1 619
12 TraesCS6D01G332100 chr5A 491287571 491291025 3454 False 231.666667 278 82.907333 1113 5003 3 chr5A.!!$F2 3890
13 TraesCS6D01G332100 chr4D 75796543 75797067 524 False 479.000000 479 83.523000 147 661 1 chr4D.!!$F1 514
14 TraesCS6D01G332100 chr1D 453582298 453582835 537 True 473.000000 473 83.026000 131 656 1 chr1D.!!$R2 525
15 TraesCS6D01G332100 chr3A 677123284 677123939 655 True 464.000000 464 79.851000 37 692 1 chr3A.!!$R1 655
16 TraesCS6D01G332100 chr3B 475468439 475469038 599 False 433.000000 433 80.259000 59 658 1 chr3B.!!$F2 599
17 TraesCS6D01G332100 chr2B 800263629 800264166 537 True 398.000000 398 80.251000 32 583 1 chr2B.!!$R2 551
18 TraesCS6D01G332100 chr5B 466773760 466777931 4171 False 239.000000 289 81.561667 1113 5003 3 chr5B.!!$F2 3890

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
747 780 0.106918 TAGCCCTTTGGGTATTGCGG 60.107 55.000 4.42 0.00 46.51 5.69 F
787 820 0.171007 CCTTTGGGTATTGCGTGCAG 59.829 55.000 0.00 0.00 0.00 4.41 F
788 821 0.171007 CTTTGGGTATTGCGTGCAGG 59.829 55.000 1.01 1.01 0.00 4.85 F
836 869 0.318614 GGTTTGTGCGTCCATGTTGG 60.319 55.000 0.00 0.00 39.43 3.77 F
952 985 0.395862 CCGAGCTCCCAGAGGAACTA 60.396 60.000 8.47 0.00 43.40 2.24 F
1070 1105 0.465824 CCCTCTCTCGACCGGTGTAT 60.466 60.000 14.63 0.00 0.00 2.29 F
1497 1728 0.664166 GCGTTCATTGTGGCAACTGG 60.664 55.000 0.00 0.00 37.61 4.00 F
1498 1729 0.664166 CGTTCATTGTGGCAACTGGC 60.664 55.000 0.00 0.00 43.74 4.85 F
2345 2686 3.063452 CCATTCCAAATTACTCGTCGTGG 59.937 47.826 0.00 0.00 0.00 4.94 F
2828 3684 0.917259 GTGCTACTGAATCGCTCACG 59.083 55.000 0.00 0.00 42.01 4.35 F
4239 5986 3.265221 TGGATGGAAGCTGAATTCTGTCT 59.735 43.478 13.17 8.36 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1714 1963 0.795735 CAGCGGAAATTGCTCAAGCG 60.796 55.000 0.00 0.00 45.83 4.68 R
2386 2727 1.067071 CACAACTACTCCCTCCGTTCC 60.067 57.143 0.00 0.00 0.00 3.62 R
2387 2728 1.617357 ACACAACTACTCCCTCCGTTC 59.383 52.381 0.00 0.00 0.00 3.95 R
2388 2729 1.713297 ACACAACTACTCCCTCCGTT 58.287 50.000 0.00 0.00 0.00 4.44 R
2389 2730 2.592102 TACACAACTACTCCCTCCGT 57.408 50.000 0.00 0.00 0.00 4.69 R
2390 2731 3.021695 TCATACACAACTACTCCCTCCG 58.978 50.000 0.00 0.00 0.00 4.63 R
2391 2732 6.722129 AGATATCATACACAACTACTCCCTCC 59.278 42.308 5.32 0.00 0.00 4.30 R
2393 2734 7.069986 ACAGATATCATACACAACTACTCCCT 58.930 38.462 5.32 0.00 0.00 4.20 R
4269 6017 9.722056 GCCAATTTTAACAATCACTATCACTAG 57.278 33.333 0.00 0.00 0.00 2.57 R
4463 6409 5.605540 AGAGGCATTTGTATTATCCCCAT 57.394 39.130 0.00 0.00 0.00 4.00 R
5145 7212 0.385390 GGGATTGCCATCGCGAAAAT 59.615 50.000 15.24 11.09 38.08 1.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.913578 TTGCAGCTGCCTGGGTTG 60.914 61.111 34.64 0.00 39.54 3.77
20 21 4.673375 CAGCTGCCTGGGTTGCCT 62.673 66.667 0.00 0.00 35.38 4.75
21 22 4.673375 AGCTGCCTGGGTTGCCTG 62.673 66.667 0.00 0.00 0.00 4.85
71 73 3.809013 ATCGCCATCACCACCCCC 61.809 66.667 0.00 0.00 0.00 5.40
74 76 3.338250 GCCATCACCACCCCCTCA 61.338 66.667 0.00 0.00 0.00 3.86
115 117 1.556911 ACATCGTCTCCCAGCAAATCT 59.443 47.619 0.00 0.00 0.00 2.40
119 121 1.743996 GTCTCCCAGCAAATCTGTCC 58.256 55.000 0.00 0.00 41.25 4.02
120 122 0.250234 TCTCCCAGCAAATCTGTCCG 59.750 55.000 0.00 0.00 41.25 4.79
121 123 0.250234 CTCCCAGCAAATCTGTCCGA 59.750 55.000 0.00 0.00 41.25 4.55
122 124 0.911769 TCCCAGCAAATCTGTCCGAT 59.088 50.000 0.00 0.00 41.25 4.18
123 125 1.134401 TCCCAGCAAATCTGTCCGATC 60.134 52.381 0.00 0.00 41.25 3.69
124 126 0.933097 CCAGCAAATCTGTCCGATCG 59.067 55.000 8.51 8.51 41.25 3.69
126 128 2.477825 CAGCAAATCTGTCCGATCGAT 58.522 47.619 18.66 0.00 38.02 3.59
127 129 2.220363 CAGCAAATCTGTCCGATCGATG 59.780 50.000 18.66 0.00 38.02 3.84
128 130 2.159043 AGCAAATCTGTCCGATCGATGT 60.159 45.455 18.66 0.00 0.00 3.06
130 132 3.426859 GCAAATCTGTCCGATCGATGTAG 59.573 47.826 18.66 9.28 0.00 2.74
132 134 0.952280 TCTGTCCGATCGATGTAGGC 59.048 55.000 18.66 0.63 0.00 3.93
133 135 0.668535 CTGTCCGATCGATGTAGGCA 59.331 55.000 18.66 6.03 0.00 4.75
163 168 2.006552 GCGGGTGGGAAAAATTCATGC 61.007 52.381 0.00 0.00 0.00 4.06
210 215 1.139058 ACCGCGGATAGCTGAGAAAAT 59.861 47.619 35.90 0.00 45.59 1.82
229 234 5.983333 AAATTAGATCATGGGAGGTCACT 57.017 39.130 0.00 0.00 0.00 3.41
284 310 3.454375 CGATTACATAGCCGGTGTCTTT 58.546 45.455 1.90 0.00 0.00 2.52
400 427 0.465705 CCCCTCTCGCTGAAGCATAA 59.534 55.000 2.79 0.00 42.21 1.90
410 437 2.158696 GCTGAAGCATAATCCCTCCAGT 60.159 50.000 0.00 0.00 41.59 4.00
456 484 1.112113 GCCGGACATGAGGAAGACTA 58.888 55.000 5.05 0.00 0.00 2.59
468 496 3.769844 GAGGAAGACTATTGTGGGAGTGA 59.230 47.826 0.00 0.00 0.00 3.41
563 596 6.197364 TGTAAATGTTTTCGTCTGGTTTGT 57.803 33.333 0.00 0.00 0.00 2.83
596 629 3.380004 TCCGGTTTGCATGTAATTCATCC 59.620 43.478 0.00 0.00 34.09 3.51
597 630 3.362295 CGGTTTGCATGTAATTCATCCG 58.638 45.455 0.00 4.10 34.38 4.18
598 631 3.064682 CGGTTTGCATGTAATTCATCCGA 59.935 43.478 14.12 0.00 39.61 4.55
599 632 4.261155 CGGTTTGCATGTAATTCATCCGAT 60.261 41.667 14.12 0.00 39.61 4.18
600 633 5.591099 GGTTTGCATGTAATTCATCCGATT 58.409 37.500 0.00 0.00 34.09 3.34
601 634 6.042143 GGTTTGCATGTAATTCATCCGATTT 58.958 36.000 0.00 0.00 34.09 2.17
602 635 7.199766 GGTTTGCATGTAATTCATCCGATTTA 58.800 34.615 0.00 0.00 34.09 1.40
603 636 7.867403 GGTTTGCATGTAATTCATCCGATTTAT 59.133 33.333 0.00 0.00 34.09 1.40
604 637 9.248291 GTTTGCATGTAATTCATCCGATTTATT 57.752 29.630 0.00 0.00 34.09 1.40
605 638 9.814899 TTTGCATGTAATTCATCCGATTTATTT 57.185 25.926 0.00 0.00 34.09 1.40
617 650 9.632807 TCATCCGATTTATTTAAAAGGTGTTTG 57.367 29.630 0.00 0.00 32.48 2.93
618 651 9.632807 CATCCGATTTATTTAAAAGGTGTTTGA 57.367 29.630 0.00 0.00 32.48 2.69
629 662 8.879342 TTAAAAGGTGTTTGAAATGTATGGTG 57.121 30.769 0.00 0.00 0.00 4.17
630 663 6.478512 AAAGGTGTTTGAAATGTATGGTGT 57.521 33.333 0.00 0.00 0.00 4.16
631 664 7.589958 AAAGGTGTTTGAAATGTATGGTGTA 57.410 32.000 0.00 0.00 0.00 2.90
632 665 6.817765 AGGTGTTTGAAATGTATGGTGTAG 57.182 37.500 0.00 0.00 0.00 2.74
633 666 5.183140 AGGTGTTTGAAATGTATGGTGTAGC 59.817 40.000 0.00 0.00 0.00 3.58
634 667 5.086058 GTGTTTGAAATGTATGGTGTAGCG 58.914 41.667 0.00 0.00 0.00 4.26
635 668 4.757657 TGTTTGAAATGTATGGTGTAGCGT 59.242 37.500 0.00 0.00 0.00 5.07
636 669 5.239744 TGTTTGAAATGTATGGTGTAGCGTT 59.760 36.000 0.00 0.00 0.00 4.84
637 670 4.937696 TGAAATGTATGGTGTAGCGTTG 57.062 40.909 0.00 0.00 0.00 4.10
638 671 3.687212 TGAAATGTATGGTGTAGCGTTGG 59.313 43.478 0.00 0.00 0.00 3.77
639 672 3.620427 AATGTATGGTGTAGCGTTGGA 57.380 42.857 0.00 0.00 0.00 3.53
640 673 3.838244 ATGTATGGTGTAGCGTTGGAT 57.162 42.857 0.00 0.00 0.00 3.41
641 674 2.899976 TGTATGGTGTAGCGTTGGATG 58.100 47.619 0.00 0.00 0.00 3.51
642 675 2.210116 GTATGGTGTAGCGTTGGATGG 58.790 52.381 0.00 0.00 0.00 3.51
643 676 0.748005 ATGGTGTAGCGTTGGATGGC 60.748 55.000 0.00 0.00 0.00 4.40
644 677 2.112815 GGTGTAGCGTTGGATGGCC 61.113 63.158 0.00 0.00 0.00 5.36
645 678 2.125310 TGTAGCGTTGGATGGCCG 60.125 61.111 0.00 0.00 36.79 6.13
646 679 2.895372 GTAGCGTTGGATGGCCGG 60.895 66.667 0.00 0.00 36.79 6.13
647 680 4.849310 TAGCGTTGGATGGCCGGC 62.849 66.667 21.18 21.18 36.79 6.13
651 684 4.115199 GTTGGATGGCCGGCTCCT 62.115 66.667 29.08 14.77 36.79 3.69
652 685 4.113815 TTGGATGGCCGGCTCCTG 62.114 66.667 29.08 0.00 36.79 3.86
655 688 4.575973 GATGGCCGGCTCCTGCAT 62.576 66.667 28.56 20.54 41.91 3.96
656 689 4.133373 ATGGCCGGCTCCTGCATT 62.133 61.111 28.56 2.78 41.91 3.56
657 690 4.802051 TGGCCGGCTCCTGCATTC 62.802 66.667 28.56 6.48 41.91 2.67
660 693 3.197790 CCGGCTCCTGCATTCGTG 61.198 66.667 0.00 0.00 41.91 4.35
661 694 3.197790 CGGCTCCTGCATTCGTGG 61.198 66.667 0.00 0.00 41.91 4.94
662 695 2.268920 GGCTCCTGCATTCGTGGA 59.731 61.111 0.00 0.00 41.91 4.02
663 696 2.109126 GGCTCCTGCATTCGTGGAC 61.109 63.158 0.00 0.00 41.91 4.02
664 697 1.078848 GCTCCTGCATTCGTGGACT 60.079 57.895 0.00 0.00 39.41 3.85
665 698 1.364626 GCTCCTGCATTCGTGGACTG 61.365 60.000 0.00 0.00 39.41 3.51
666 699 0.247460 CTCCTGCATTCGTGGACTGA 59.753 55.000 0.00 0.00 0.00 3.41
667 700 0.904649 TCCTGCATTCGTGGACTGAT 59.095 50.000 0.00 0.00 0.00 2.90
668 701 1.134699 TCCTGCATTCGTGGACTGATC 60.135 52.381 0.00 0.00 0.00 2.92
669 702 1.134580 CCTGCATTCGTGGACTGATCT 60.135 52.381 0.00 0.00 0.00 2.75
670 703 2.200067 CTGCATTCGTGGACTGATCTC 58.800 52.381 0.00 0.00 0.00 2.75
671 704 1.134699 TGCATTCGTGGACTGATCTCC 60.135 52.381 0.00 0.00 0.00 3.71
672 705 1.137872 GCATTCGTGGACTGATCTCCT 59.862 52.381 2.92 0.00 0.00 3.69
673 706 2.801342 GCATTCGTGGACTGATCTCCTC 60.801 54.545 2.92 0.00 0.00 3.71
674 707 1.475403 TTCGTGGACTGATCTCCTCC 58.525 55.000 2.92 0.68 0.00 4.30
675 708 0.626382 TCGTGGACTGATCTCCTCCT 59.374 55.000 2.92 0.00 0.00 3.69
676 709 1.844497 TCGTGGACTGATCTCCTCCTA 59.156 52.381 2.92 0.00 0.00 2.94
677 710 2.443632 TCGTGGACTGATCTCCTCCTAT 59.556 50.000 2.92 0.00 0.00 2.57
678 711 2.817258 CGTGGACTGATCTCCTCCTATC 59.183 54.545 2.92 0.00 0.00 2.08
679 712 3.161866 GTGGACTGATCTCCTCCTATCC 58.838 54.545 2.92 0.00 0.00 2.59
680 713 2.224892 TGGACTGATCTCCTCCTATCCG 60.225 54.545 2.92 0.00 0.00 4.18
681 714 2.224917 GGACTGATCTCCTCCTATCCGT 60.225 54.545 0.00 0.00 0.00 4.69
682 715 2.817258 GACTGATCTCCTCCTATCCGTG 59.183 54.545 0.00 0.00 0.00 4.94
683 716 2.166829 CTGATCTCCTCCTATCCGTGG 58.833 57.143 0.00 0.00 0.00 4.94
684 717 0.892063 GATCTCCTCCTATCCGTGGC 59.108 60.000 0.00 0.00 0.00 5.01
685 718 0.543174 ATCTCCTCCTATCCGTGGCC 60.543 60.000 0.00 0.00 0.00 5.36
686 719 2.520982 TCCTCCTATCCGTGGCCG 60.521 66.667 0.00 0.00 0.00 6.13
697 730 3.838271 GTGGCCGGATGCGAGAGA 61.838 66.667 8.71 0.00 42.61 3.10
698 731 3.074369 TGGCCGGATGCGAGAGAA 61.074 61.111 8.71 0.00 42.61 2.87
699 732 2.186903 GGCCGGATGCGAGAGAAA 59.813 61.111 8.71 0.00 42.61 2.52
700 733 1.449601 GGCCGGATGCGAGAGAAAA 60.450 57.895 8.71 0.00 42.61 2.29
701 734 0.815615 GGCCGGATGCGAGAGAAAAT 60.816 55.000 8.71 0.00 42.61 1.82
702 735 1.017387 GCCGGATGCGAGAGAAAATT 58.983 50.000 8.71 0.00 0.00 1.82
703 736 1.401905 GCCGGATGCGAGAGAAAATTT 59.598 47.619 8.71 0.00 0.00 1.82
704 737 2.612212 GCCGGATGCGAGAGAAAATTTA 59.388 45.455 8.71 0.00 0.00 1.40
705 738 3.251004 GCCGGATGCGAGAGAAAATTTAT 59.749 43.478 8.71 0.00 0.00 1.40
706 739 4.776743 CCGGATGCGAGAGAAAATTTATG 58.223 43.478 8.71 0.00 0.00 1.90
707 740 4.319766 CCGGATGCGAGAGAAAATTTATGG 60.320 45.833 8.71 0.00 0.00 2.74
708 741 4.319766 CGGATGCGAGAGAAAATTTATGGG 60.320 45.833 0.00 0.00 0.00 4.00
709 742 4.580580 GGATGCGAGAGAAAATTTATGGGT 59.419 41.667 0.00 0.00 0.00 4.51
710 743 5.278022 GGATGCGAGAGAAAATTTATGGGTC 60.278 44.000 0.00 0.00 0.00 4.46
711 744 4.584874 TGCGAGAGAAAATTTATGGGTCA 58.415 39.130 0.00 0.00 0.00 4.02
712 745 5.192927 TGCGAGAGAAAATTTATGGGTCAT 58.807 37.500 0.00 0.00 0.00 3.06
713 746 5.652014 TGCGAGAGAAAATTTATGGGTCATT 59.348 36.000 0.00 0.00 0.00 2.57
714 747 5.973565 GCGAGAGAAAATTTATGGGTCATTG 59.026 40.000 0.00 0.00 0.00 2.82
715 748 6.404734 GCGAGAGAAAATTTATGGGTCATTGT 60.405 38.462 0.00 0.00 0.00 2.71
716 749 7.538575 CGAGAGAAAATTTATGGGTCATTGTT 58.461 34.615 0.00 0.00 0.00 2.83
717 750 7.698130 CGAGAGAAAATTTATGGGTCATTGTTC 59.302 37.037 0.00 0.00 0.00 3.18
718 751 7.538575 AGAGAAAATTTATGGGTCATTGTTCG 58.461 34.615 0.00 0.00 0.00 3.95
719 752 7.393234 AGAGAAAATTTATGGGTCATTGTTCGA 59.607 33.333 0.00 0.00 0.00 3.71
720 753 7.538575 AGAAAATTTATGGGTCATTGTTCGAG 58.461 34.615 0.00 0.00 0.00 4.04
721 754 7.393234 AGAAAATTTATGGGTCATTGTTCGAGA 59.607 33.333 0.00 0.00 0.00 4.04
722 755 7.645058 AAATTTATGGGTCATTGTTCGAGAT 57.355 32.000 0.00 0.00 0.00 2.75
723 756 6.624352 ATTTATGGGTCATTGTTCGAGATG 57.376 37.500 0.00 0.00 0.00 2.90
724 757 1.737838 TGGGTCATTGTTCGAGATGC 58.262 50.000 0.00 0.00 0.00 3.91
725 758 1.017387 GGGTCATTGTTCGAGATGCC 58.983 55.000 0.00 0.00 0.00 4.40
726 759 1.017387 GGTCATTGTTCGAGATGCCC 58.983 55.000 0.00 0.00 0.00 5.36
727 760 1.407437 GGTCATTGTTCGAGATGCCCT 60.407 52.381 0.00 0.00 0.00 5.19
728 761 2.359900 GTCATTGTTCGAGATGCCCTT 58.640 47.619 0.00 0.00 0.00 3.95
729 762 3.531538 GTCATTGTTCGAGATGCCCTTA 58.468 45.455 0.00 0.00 0.00 2.69
730 763 3.557595 GTCATTGTTCGAGATGCCCTTAG 59.442 47.826 0.00 0.00 0.00 2.18
731 764 2.024176 TTGTTCGAGATGCCCTTAGC 57.976 50.000 0.00 0.00 44.14 3.09
732 765 0.178068 TGTTCGAGATGCCCTTAGCC 59.822 55.000 0.00 0.00 42.71 3.93
733 766 0.533085 GTTCGAGATGCCCTTAGCCC 60.533 60.000 0.00 0.00 42.71 5.19
734 767 0.691078 TTCGAGATGCCCTTAGCCCT 60.691 55.000 0.00 0.00 42.71 5.19
735 768 0.691078 TCGAGATGCCCTTAGCCCTT 60.691 55.000 0.00 0.00 42.71 3.95
736 769 0.181350 CGAGATGCCCTTAGCCCTTT 59.819 55.000 0.00 0.00 42.71 3.11
737 770 1.685148 GAGATGCCCTTAGCCCTTTG 58.315 55.000 0.00 0.00 42.71 2.77
738 771 0.259938 AGATGCCCTTAGCCCTTTGG 59.740 55.000 0.00 0.00 42.71 3.28
740 773 1.518431 ATGCCCTTAGCCCTTTGGGT 61.518 55.000 4.42 0.00 46.51 4.51
741 774 0.847314 TGCCCTTAGCCCTTTGGGTA 60.847 55.000 4.42 0.00 46.51 3.69
742 775 0.556258 GCCCTTAGCCCTTTGGGTAT 59.444 55.000 4.42 0.00 46.51 2.73
743 776 1.063190 GCCCTTAGCCCTTTGGGTATT 60.063 52.381 4.42 0.00 46.51 1.89
744 777 2.666317 CCCTTAGCCCTTTGGGTATTG 58.334 52.381 4.42 0.00 46.51 1.90
745 778 2.031870 CCTTAGCCCTTTGGGTATTGC 58.968 52.381 4.42 0.00 46.51 3.56
746 779 1.676006 CTTAGCCCTTTGGGTATTGCG 59.324 52.381 4.42 0.00 46.51 4.85
747 780 0.106918 TAGCCCTTTGGGTATTGCGG 60.107 55.000 4.42 0.00 46.51 5.69
748 781 2.423064 GCCCTTTGGGTATTGCGGG 61.423 63.158 4.42 0.00 46.51 6.13
749 782 1.000145 CCCTTTGGGTATTGCGGGT 60.000 57.895 0.00 0.00 38.25 5.28
750 783 0.613572 CCCTTTGGGTATTGCGGGTT 60.614 55.000 0.00 0.00 38.25 4.11
751 784 1.262417 CCTTTGGGTATTGCGGGTTT 58.738 50.000 0.00 0.00 0.00 3.27
752 785 1.621317 CCTTTGGGTATTGCGGGTTTT 59.379 47.619 0.00 0.00 0.00 2.43
753 786 2.037902 CCTTTGGGTATTGCGGGTTTTT 59.962 45.455 0.00 0.00 0.00 1.94
775 808 2.656947 TTCCTGAGACAACCTTTGGG 57.343 50.000 0.00 0.00 38.88 4.12
777 810 2.696775 TCCTGAGACAACCTTTGGGTA 58.303 47.619 0.00 0.00 46.67 3.69
778 811 3.256704 TCCTGAGACAACCTTTGGGTAT 58.743 45.455 0.00 0.00 46.67 2.73
779 812 3.655777 TCCTGAGACAACCTTTGGGTATT 59.344 43.478 0.00 0.00 46.67 1.89
780 813 3.758554 CCTGAGACAACCTTTGGGTATTG 59.241 47.826 0.00 0.00 46.67 1.90
781 814 3.153919 TGAGACAACCTTTGGGTATTGC 58.846 45.455 0.00 0.00 46.67 3.56
782 815 2.159382 AGACAACCTTTGGGTATTGCG 58.841 47.619 0.00 0.00 46.67 4.85
783 816 1.883926 GACAACCTTTGGGTATTGCGT 59.116 47.619 0.00 0.00 46.67 5.24
784 817 1.611491 ACAACCTTTGGGTATTGCGTG 59.389 47.619 0.00 0.00 46.67 5.34
785 818 0.601057 AACCTTTGGGTATTGCGTGC 59.399 50.000 0.00 0.00 46.67 5.34
786 819 0.538516 ACCTTTGGGTATTGCGTGCA 60.539 50.000 0.00 0.00 45.32 4.57
787 820 0.171007 CCTTTGGGTATTGCGTGCAG 59.829 55.000 0.00 0.00 0.00 4.41
788 821 0.171007 CTTTGGGTATTGCGTGCAGG 59.829 55.000 1.01 1.01 0.00 4.85
789 822 0.538516 TTTGGGTATTGCGTGCAGGT 60.539 50.000 8.40 0.00 0.00 4.00
790 823 1.240641 TTGGGTATTGCGTGCAGGTG 61.241 55.000 8.40 0.00 0.00 4.00
791 824 2.406616 GGGTATTGCGTGCAGGTGG 61.407 63.158 8.40 0.00 0.00 4.61
792 825 1.674322 GGTATTGCGTGCAGGTGGT 60.674 57.895 8.40 0.00 0.00 4.16
793 826 1.241315 GGTATTGCGTGCAGGTGGTT 61.241 55.000 8.40 0.00 0.00 3.67
794 827 0.596082 GTATTGCGTGCAGGTGGTTT 59.404 50.000 8.40 0.00 0.00 3.27
795 828 1.000717 GTATTGCGTGCAGGTGGTTTT 60.001 47.619 8.40 0.00 0.00 2.43
796 829 0.463620 ATTGCGTGCAGGTGGTTTTT 59.536 45.000 8.40 0.00 0.00 1.94
814 847 2.740826 TTTTTCCGCGCTCCCGAG 60.741 61.111 5.56 0.00 36.29 4.63
825 858 1.376037 CTCCCGAGGAGGTTTGTGC 60.376 63.158 11.05 0.00 45.43 4.57
826 859 2.742372 CCCGAGGAGGTTTGTGCG 60.742 66.667 0.00 0.00 38.74 5.34
827 860 2.030562 CCGAGGAGGTTTGTGCGT 59.969 61.111 0.00 0.00 34.51 5.24
828 861 2.027625 CCGAGGAGGTTTGTGCGTC 61.028 63.158 0.00 0.00 34.51 5.19
829 862 2.027625 CGAGGAGGTTTGTGCGTCC 61.028 63.158 0.00 0.00 42.09 4.79
830 863 1.070786 GAGGAGGTTTGTGCGTCCA 59.929 57.895 7.42 0.00 43.65 4.02
831 864 0.321653 GAGGAGGTTTGTGCGTCCAT 60.322 55.000 7.42 0.00 43.65 3.41
832 865 0.606401 AGGAGGTTTGTGCGTCCATG 60.606 55.000 7.42 0.00 43.65 3.66
833 866 0.889186 GGAGGTTTGTGCGTCCATGT 60.889 55.000 0.00 0.00 41.57 3.21
834 867 0.951558 GAGGTTTGTGCGTCCATGTT 59.048 50.000 0.00 0.00 0.00 2.71
835 868 0.667993 AGGTTTGTGCGTCCATGTTG 59.332 50.000 0.00 0.00 0.00 3.33
836 869 0.318614 GGTTTGTGCGTCCATGTTGG 60.319 55.000 0.00 0.00 39.43 3.77
837 870 0.665835 GTTTGTGCGTCCATGTTGGA 59.334 50.000 0.00 0.00 45.98 3.53
930 963 1.477923 CCTACCTCCTCCTCTCCGAAG 60.478 61.905 0.00 0.00 0.00 3.79
952 985 0.395862 CCGAGCTCCCAGAGGAACTA 60.396 60.000 8.47 0.00 43.40 2.24
1070 1105 0.465824 CCCTCTCTCGACCGGTGTAT 60.466 60.000 14.63 0.00 0.00 2.29
1320 1542 0.811616 GGCCGTCCAGATTAGCAGTG 60.812 60.000 0.00 0.00 0.00 3.66
1337 1559 8.767478 TTAGCAGTGGTCTGTTTAGTTTATAC 57.233 34.615 0.00 0.00 43.05 1.47
1424 1646 1.068352 GGAGGATTGGGTGCCCCTAT 61.068 60.000 11.10 8.94 45.70 2.57
1497 1728 0.664166 GCGTTCATTGTGGCAACTGG 60.664 55.000 0.00 0.00 37.61 4.00
1498 1729 0.664166 CGTTCATTGTGGCAACTGGC 60.664 55.000 0.00 0.00 43.74 4.85
1532 1763 3.625764 TGTTTTGAAGTTTGGAGACTCCG 59.374 43.478 16.81 0.00 40.17 4.63
1618 1849 4.566545 TGTAGCATAAAATTCGCCATGG 57.433 40.909 7.63 7.63 0.00 3.66
1714 1963 9.430623 GAGAATATCTTACAGCCTTCTTATTCC 57.569 37.037 0.00 0.00 0.00 3.01
1965 2217 4.259356 TGCTTTGGTGAGAGAAGATGATG 58.741 43.478 0.00 0.00 0.00 3.07
2319 2660 9.933723 TCCTTAACTGTACCTTTGTTTATACTC 57.066 33.333 0.00 0.00 0.00 2.59
2320 2661 9.159364 CCTTAACTGTACCTTTGTTTATACTCC 57.841 37.037 0.00 0.00 0.00 3.85
2321 2662 9.159364 CTTAACTGTACCTTTGTTTATACTCCC 57.841 37.037 0.00 0.00 0.00 4.30
2322 2663 6.947376 ACTGTACCTTTGTTTATACTCCCT 57.053 37.500 0.00 0.00 0.00 4.20
2323 2664 6.944096 ACTGTACCTTTGTTTATACTCCCTC 58.056 40.000 0.00 0.00 0.00 4.30
2324 2665 6.070366 ACTGTACCTTTGTTTATACTCCCTCC 60.070 42.308 0.00 0.00 0.00 4.30
2325 2666 5.786457 TGTACCTTTGTTTATACTCCCTCCA 59.214 40.000 0.00 0.00 0.00 3.86
2326 2667 6.445786 TGTACCTTTGTTTATACTCCCTCCAT 59.554 38.462 0.00 0.00 0.00 3.41
2327 2668 6.402981 ACCTTTGTTTATACTCCCTCCATT 57.597 37.500 0.00 0.00 0.00 3.16
2328 2669 6.424032 ACCTTTGTTTATACTCCCTCCATTC 58.576 40.000 0.00 0.00 0.00 2.67
2329 2670 5.828328 CCTTTGTTTATACTCCCTCCATTCC 59.172 44.000 0.00 0.00 0.00 3.01
2330 2671 6.395780 TTTGTTTATACTCCCTCCATTCCA 57.604 37.500 0.00 0.00 0.00 3.53
2331 2672 6.395780 TTGTTTATACTCCCTCCATTCCAA 57.604 37.500 0.00 0.00 0.00 3.53
2332 2673 6.395780 TGTTTATACTCCCTCCATTCCAAA 57.604 37.500 0.00 0.00 0.00 3.28
2333 2674 6.980577 TGTTTATACTCCCTCCATTCCAAAT 58.019 36.000 0.00 0.00 0.00 2.32
2334 2675 7.418378 TGTTTATACTCCCTCCATTCCAAATT 58.582 34.615 0.00 0.00 0.00 1.82
2335 2676 8.561769 TGTTTATACTCCCTCCATTCCAAATTA 58.438 33.333 0.00 0.00 0.00 1.40
2336 2677 8.847196 GTTTATACTCCCTCCATTCCAAATTAC 58.153 37.037 0.00 0.00 0.00 1.89
2337 2678 6.848562 ATACTCCCTCCATTCCAAATTACT 57.151 37.500 0.00 0.00 0.00 2.24
2338 2679 5.117406 ACTCCCTCCATTCCAAATTACTC 57.883 43.478 0.00 0.00 0.00 2.59
2339 2680 4.130118 CTCCCTCCATTCCAAATTACTCG 58.870 47.826 0.00 0.00 0.00 4.18
2340 2681 3.521937 TCCCTCCATTCCAAATTACTCGT 59.478 43.478 0.00 0.00 0.00 4.18
2341 2682 3.877508 CCCTCCATTCCAAATTACTCGTC 59.122 47.826 0.00 0.00 0.00 4.20
2342 2683 3.555956 CCTCCATTCCAAATTACTCGTCG 59.444 47.826 0.00 0.00 0.00 5.12
2343 2684 4.181578 CTCCATTCCAAATTACTCGTCGT 58.818 43.478 0.00 0.00 0.00 4.34
2344 2685 3.930229 TCCATTCCAAATTACTCGTCGTG 59.070 43.478 0.00 0.00 0.00 4.35
2345 2686 3.063452 CCATTCCAAATTACTCGTCGTGG 59.937 47.826 0.00 0.00 0.00 4.94
2346 2687 3.389925 TTCCAAATTACTCGTCGTGGT 57.610 42.857 0.00 0.00 0.00 4.16
2347 2688 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
2348 2689 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
2349 2690 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
2350 2691 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
2351 2692 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
2352 2693 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
2353 2694 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
2354 2695 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
2355 2696 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
2356 2697 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
2357 2698 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
2358 2699 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
2359 2700 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
2360 2701 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
2361 2702 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
2362 2703 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
2363 2704 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
2377 2718 7.922505 TCAAATTTGAACTAAAACCATGACG 57.077 32.000 18.45 0.00 33.55 4.35
2378 2719 7.708051 TCAAATTTGAACTAAAACCATGACGA 58.292 30.769 18.45 0.00 33.55 4.20
2379 2720 7.860373 TCAAATTTGAACTAAAACCATGACGAG 59.140 33.333 18.45 0.00 33.55 4.18
2380 2721 6.877611 ATTTGAACTAAAACCATGACGAGT 57.122 33.333 0.00 0.00 0.00 4.18
2381 2722 7.972832 ATTTGAACTAAAACCATGACGAGTA 57.027 32.000 0.00 0.00 0.00 2.59
2382 2723 7.789273 TTTGAACTAAAACCATGACGAGTAA 57.211 32.000 0.00 0.00 0.00 2.24
2383 2724 7.972832 TTGAACTAAAACCATGACGAGTAAT 57.027 32.000 0.00 0.00 0.00 1.89
2384 2725 7.972832 TGAACTAAAACCATGACGAGTAATT 57.027 32.000 0.00 0.00 0.00 1.40
2385 2726 8.385898 TGAACTAAAACCATGACGAGTAATTT 57.614 30.769 0.00 0.00 0.00 1.82
2386 2727 8.286800 TGAACTAAAACCATGACGAGTAATTTG 58.713 33.333 0.00 0.00 0.00 2.32
2387 2728 7.141100 ACTAAAACCATGACGAGTAATTTGG 57.859 36.000 0.00 0.00 0.00 3.28
2388 2729 6.938030 ACTAAAACCATGACGAGTAATTTGGA 59.062 34.615 0.00 0.00 0.00 3.53
2389 2730 6.642707 AAAACCATGACGAGTAATTTGGAA 57.357 33.333 0.00 0.00 0.00 3.53
2390 2731 5.622770 AACCATGACGAGTAATTTGGAAC 57.377 39.130 0.00 0.00 0.00 3.62
2391 2732 3.682858 ACCATGACGAGTAATTTGGAACG 59.317 43.478 0.00 0.00 0.00 3.95
2392 2733 3.063452 CCATGACGAGTAATTTGGAACGG 59.937 47.826 0.00 0.00 0.00 4.44
2393 2734 3.663995 TGACGAGTAATTTGGAACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2394 2735 3.581755 TGACGAGTAATTTGGAACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2395 2736 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2396 2737 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2397 2738 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2398 2739 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
2680 3425 9.865484 GTTAAACTTCAAGACTGAAATAGTGAC 57.135 33.333 0.00 0.00 41.05 3.67
2828 3684 0.917259 GTGCTACTGAATCGCTCACG 59.083 55.000 0.00 0.00 42.01 4.35
2980 3836 9.161629 TGTACACAAGGTATGATTGTCTATTTG 57.838 33.333 0.00 0.00 38.80 2.32
3489 5165 5.880332 TGAAGGTTCATACTTATTGCCTGTC 59.120 40.000 0.00 0.00 31.01 3.51
3680 5357 3.418684 TCAAAGGTAGAGGAAAGCACC 57.581 47.619 0.00 0.00 0.00 5.01
4110 5838 3.383620 TTGCCTGGTAAGCATGTTTTG 57.616 42.857 0.00 0.00 40.59 2.44
4239 5986 3.265221 TGGATGGAAGCTGAATTCTGTCT 59.735 43.478 13.17 8.36 0.00 3.41
4240 5987 4.263639 TGGATGGAAGCTGAATTCTGTCTT 60.264 41.667 13.17 14.90 0.00 3.01
4248 5995 7.307870 GGAAGCTGAATTCTGTCTTATATGCAG 60.308 40.741 13.17 0.00 0.00 4.41
4463 6409 0.911769 CTGGTAGGAATGCAGGACCA 59.088 55.000 8.83 8.13 37.85 4.02
4865 6918 5.301045 TCCTCATATTAACCGATCGACACTT 59.699 40.000 18.66 4.70 0.00 3.16
5052 7118 0.824109 TTACACCGCCTCATCTGGAG 59.176 55.000 0.00 0.00 43.65 3.86
5053 7119 1.676678 TACACCGCCTCATCTGGAGC 61.677 60.000 0.00 0.00 42.62 4.70
5081 7148 2.290705 CCCCGTAACCCTGAACATCTTT 60.291 50.000 0.00 0.00 0.00 2.52
5107 7174 1.433121 GAGAGATCCAGGGAATGCCT 58.567 55.000 0.00 0.00 0.00 4.75
5108 7175 1.773653 GAGAGATCCAGGGAATGCCTT 59.226 52.381 0.00 0.00 0.00 4.35
5116 7183 0.040204 AGGGAATGCCTTGGGACTTG 59.960 55.000 0.00 0.00 0.00 3.16
5140 7207 2.816672 TGACATCAAATTGTTAGGCGCA 59.183 40.909 10.83 0.00 0.00 6.09
5141 7208 3.254411 TGACATCAAATTGTTAGGCGCAA 59.746 39.130 10.83 0.00 0.00 4.85
5142 7209 3.836949 ACATCAAATTGTTAGGCGCAAG 58.163 40.909 10.83 0.00 43.44 4.01
5143 7210 3.255642 ACATCAAATTGTTAGGCGCAAGT 59.744 39.130 10.83 0.00 41.68 3.16
5144 7211 4.236935 CATCAAATTGTTAGGCGCAAGTT 58.763 39.130 10.83 0.00 35.00 2.66
5145 7212 5.048364 ACATCAAATTGTTAGGCGCAAGTTA 60.048 36.000 10.83 0.00 33.28 2.24
5146 7213 5.637006 TCAAATTGTTAGGCGCAAGTTAT 57.363 34.783 10.83 0.00 33.28 1.89
5147 7214 6.019779 TCAAATTGTTAGGCGCAAGTTATT 57.980 33.333 10.83 0.00 33.28 1.40
5148 7215 6.451393 TCAAATTGTTAGGCGCAAGTTATTT 58.549 32.000 10.83 4.82 33.28 1.40
5149 7216 6.926272 TCAAATTGTTAGGCGCAAGTTATTTT 59.074 30.769 10.83 0.00 33.28 1.82
5267 8344 5.221244 GCCCTGTTTGTTGACTTGTTCTTAT 60.221 40.000 0.00 0.00 0.00 1.73
5305 9832 5.488341 TCTGAAACCTAGTACCATTTCTGC 58.512 41.667 9.04 0.00 33.21 4.26
5328 9855 1.141657 TGCAATCTGGCATCTCTACCC 59.858 52.381 0.00 0.00 39.25 3.69
5360 9913 0.459237 CTCGGCACTCCTGTAAGCAG 60.459 60.000 0.00 0.00 42.22 4.24
5442 9995 2.183300 GCGATGTGGTAGCCGACA 59.817 61.111 0.00 0.00 0.00 4.35
5449 10002 0.459759 GTGGTAGCCGACAAGCCTAC 60.460 60.000 0.00 0.00 0.00 3.18
5461 10014 2.092212 ACAAGCCTACCATTGATCAGGG 60.092 50.000 12.56 12.56 0.00 4.45
5499 10053 2.288395 GGGGCACATCAAAAGAACACAG 60.288 50.000 0.00 0.00 0.00 3.66
5598 10155 5.163468 TGGTACGTACACCAGTCAACTTAAA 60.163 40.000 26.02 0.00 43.76 1.52
5744 10301 4.180817 CGGCACTGTATTTGATGAGTGTA 58.819 43.478 0.00 0.00 38.47 2.90
5796 10364 4.081642 CCTTAACCATCTGAGTTCGGAAGA 60.082 45.833 0.00 0.00 34.49 2.87
5805 10373 5.828747 TCTGAGTTCGGAAGATAAATACGG 58.171 41.667 0.00 0.00 41.60 4.02
5850 10418 0.897863 TGCGGCAAGTAGGGCATTTT 60.898 50.000 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 73 2.279120 GCCTGGACGAGCGATGAG 60.279 66.667 0.00 0.00 0.00 2.90
74 76 3.842923 CCAGCCTGGACGAGCGAT 61.843 66.667 4.15 0.00 40.96 4.58
115 117 1.107945 TTGCCTACATCGATCGGACA 58.892 50.000 16.41 0.00 0.00 4.02
119 121 1.846648 GCGTTGCCTACATCGATCG 59.153 57.895 9.36 9.36 40.63 3.69
120 122 0.870307 ACGCGTTGCCTACATCGATC 60.870 55.000 5.58 0.00 40.63 3.69
121 123 0.870307 GACGCGTTGCCTACATCGAT 60.870 55.000 15.53 0.00 40.63 3.59
122 124 1.515519 GACGCGTTGCCTACATCGA 60.516 57.895 15.53 0.00 40.63 3.59
123 125 2.845739 CGACGCGTTGCCTACATCG 61.846 63.158 15.53 4.77 41.02 3.84
124 126 2.514013 CCGACGCGTTGCCTACATC 61.514 63.158 21.38 0.00 0.00 3.06
126 128 4.728102 CCCGACGCGTTGCCTACA 62.728 66.667 21.38 0.00 0.00 2.74
203 208 6.484977 GTGACCTCCCATGATCTAATTTTCTC 59.515 42.308 0.00 0.00 0.00 2.87
210 215 2.435805 GCAGTGACCTCCCATGATCTAA 59.564 50.000 0.00 0.00 0.00 2.10
229 234 4.263572 CGTGGGACCCAAGTGGCA 62.264 66.667 16.98 0.00 37.83 4.92
265 276 3.433173 GGGAAAGACACCGGCTATGTAAT 60.433 47.826 0.00 0.00 0.00 1.89
400 427 1.383109 TCGGATGCACTGGAGGGAT 60.383 57.895 0.00 0.00 0.00 3.85
410 437 1.141665 CATCGGACTGTCGGATGCA 59.858 57.895 31.82 10.19 43.75 3.96
436 463 0.616111 AGTCTTCCTCATGTCCGGCT 60.616 55.000 0.00 0.00 0.00 5.52
447 474 3.515901 GTCACTCCCACAATAGTCTTCCT 59.484 47.826 0.00 0.00 0.00 3.36
456 484 0.175760 CGGATCGTCACTCCCACAAT 59.824 55.000 0.00 0.00 0.00 2.71
563 596 5.126869 ACATGCAAACCGGATGATTTTCATA 59.873 36.000 9.46 0.00 45.87 2.15
603 636 9.319143 CACCATACATTTCAAACACCTTTTAAA 57.681 29.630 0.00 0.00 0.00 1.52
604 637 8.478877 ACACCATACATTTCAAACACCTTTTAA 58.521 29.630 0.00 0.00 0.00 1.52
605 638 8.012957 ACACCATACATTTCAAACACCTTTTA 57.987 30.769 0.00 0.00 0.00 1.52
606 639 6.883744 ACACCATACATTTCAAACACCTTTT 58.116 32.000 0.00 0.00 0.00 2.27
607 640 6.478512 ACACCATACATTTCAAACACCTTT 57.521 33.333 0.00 0.00 0.00 3.11
608 641 6.294508 GCTACACCATACATTTCAAACACCTT 60.295 38.462 0.00 0.00 0.00 3.50
609 642 5.183140 GCTACACCATACATTTCAAACACCT 59.817 40.000 0.00 0.00 0.00 4.00
610 643 5.399013 GCTACACCATACATTTCAAACACC 58.601 41.667 0.00 0.00 0.00 4.16
611 644 5.086058 CGCTACACCATACATTTCAAACAC 58.914 41.667 0.00 0.00 0.00 3.32
612 645 4.757657 ACGCTACACCATACATTTCAAACA 59.242 37.500 0.00 0.00 0.00 2.83
613 646 5.291293 ACGCTACACCATACATTTCAAAC 57.709 39.130 0.00 0.00 0.00 2.93
614 647 5.335269 CCAACGCTACACCATACATTTCAAA 60.335 40.000 0.00 0.00 0.00 2.69
615 648 4.155099 CCAACGCTACACCATACATTTCAA 59.845 41.667 0.00 0.00 0.00 2.69
616 649 3.687212 CCAACGCTACACCATACATTTCA 59.313 43.478 0.00 0.00 0.00 2.69
617 650 3.936453 TCCAACGCTACACCATACATTTC 59.064 43.478 0.00 0.00 0.00 2.17
618 651 3.945346 TCCAACGCTACACCATACATTT 58.055 40.909 0.00 0.00 0.00 2.32
619 652 3.620427 TCCAACGCTACACCATACATT 57.380 42.857 0.00 0.00 0.00 2.71
620 653 3.466836 CATCCAACGCTACACCATACAT 58.533 45.455 0.00 0.00 0.00 2.29
621 654 2.419436 CCATCCAACGCTACACCATACA 60.419 50.000 0.00 0.00 0.00 2.29
622 655 2.210116 CCATCCAACGCTACACCATAC 58.790 52.381 0.00 0.00 0.00 2.39
623 656 1.474320 GCCATCCAACGCTACACCATA 60.474 52.381 0.00 0.00 0.00 2.74
624 657 0.748005 GCCATCCAACGCTACACCAT 60.748 55.000 0.00 0.00 0.00 3.55
625 658 1.376683 GCCATCCAACGCTACACCA 60.377 57.895 0.00 0.00 0.00 4.17
626 659 2.112815 GGCCATCCAACGCTACACC 61.113 63.158 0.00 0.00 0.00 4.16
627 660 2.461110 CGGCCATCCAACGCTACAC 61.461 63.158 2.24 0.00 0.00 2.90
628 661 2.125310 CGGCCATCCAACGCTACA 60.125 61.111 2.24 0.00 0.00 2.74
629 662 2.895372 CCGGCCATCCAACGCTAC 60.895 66.667 2.24 0.00 0.00 3.58
630 663 4.849310 GCCGGCCATCCAACGCTA 62.849 66.667 18.11 0.00 0.00 4.26
634 667 4.115199 AGGAGCCGGCCATCCAAC 62.115 66.667 30.35 11.93 38.12 3.77
635 668 4.113815 CAGGAGCCGGCCATCCAA 62.114 66.667 30.35 0.00 38.12 3.53
638 671 4.575973 ATGCAGGAGCCGGCCATC 62.576 66.667 26.15 15.79 41.13 3.51
639 672 4.133373 AATGCAGGAGCCGGCCAT 62.133 61.111 26.15 16.43 41.13 4.40
640 673 4.802051 GAATGCAGGAGCCGGCCA 62.802 66.667 26.15 14.55 41.13 5.36
643 676 3.197790 CACGAATGCAGGAGCCGG 61.198 66.667 0.00 0.00 41.13 6.13
644 677 3.197790 CCACGAATGCAGGAGCCG 61.198 66.667 0.00 0.00 41.13 5.52
645 678 2.109126 GTCCACGAATGCAGGAGCC 61.109 63.158 0.00 0.00 41.13 4.70
646 679 1.078848 AGTCCACGAATGCAGGAGC 60.079 57.895 0.00 0.00 42.57 4.70
647 680 0.247460 TCAGTCCACGAATGCAGGAG 59.753 55.000 0.00 0.00 30.78 3.69
648 681 0.904649 ATCAGTCCACGAATGCAGGA 59.095 50.000 0.00 0.00 0.00 3.86
649 682 1.134580 AGATCAGTCCACGAATGCAGG 60.135 52.381 0.00 0.00 0.00 4.85
650 683 2.200067 GAGATCAGTCCACGAATGCAG 58.800 52.381 0.00 0.00 0.00 4.41
651 684 1.134699 GGAGATCAGTCCACGAATGCA 60.135 52.381 0.00 0.00 36.51 3.96
652 685 1.137872 AGGAGATCAGTCCACGAATGC 59.862 52.381 3.98 0.00 39.34 3.56
653 686 2.223923 GGAGGAGATCAGTCCACGAATG 60.224 54.545 3.98 0.00 39.34 2.67
654 687 2.035632 GGAGGAGATCAGTCCACGAAT 58.964 52.381 3.98 0.00 39.34 3.34
655 688 1.006043 AGGAGGAGATCAGTCCACGAA 59.994 52.381 9.86 0.00 39.34 3.85
656 689 0.626382 AGGAGGAGATCAGTCCACGA 59.374 55.000 9.86 0.00 39.34 4.35
657 690 2.350057 TAGGAGGAGATCAGTCCACG 57.650 55.000 9.86 0.00 39.34 4.94
658 691 3.161866 GGATAGGAGGAGATCAGTCCAC 58.838 54.545 9.86 1.28 39.34 4.02
659 692 2.224892 CGGATAGGAGGAGATCAGTCCA 60.225 54.545 9.86 0.00 39.34 4.02
660 693 2.224917 ACGGATAGGAGGAGATCAGTCC 60.225 54.545 0.00 0.00 36.79 3.85
661 694 2.817258 CACGGATAGGAGGAGATCAGTC 59.183 54.545 0.00 0.00 29.51 3.51
662 695 2.489985 CCACGGATAGGAGGAGATCAGT 60.490 54.545 0.00 0.00 31.72 3.41
663 696 2.166829 CCACGGATAGGAGGAGATCAG 58.833 57.143 0.00 0.00 0.00 2.90
664 697 1.823648 GCCACGGATAGGAGGAGATCA 60.824 57.143 0.00 0.00 0.00 2.92
665 698 0.892063 GCCACGGATAGGAGGAGATC 59.108 60.000 0.00 0.00 0.00 2.75
666 699 0.543174 GGCCACGGATAGGAGGAGAT 60.543 60.000 0.00 0.00 0.00 2.75
667 700 1.152525 GGCCACGGATAGGAGGAGA 60.153 63.158 0.00 0.00 0.00 3.71
668 701 2.565645 CGGCCACGGATAGGAGGAG 61.566 68.421 2.24 0.00 36.18 3.69
669 702 2.520982 CGGCCACGGATAGGAGGA 60.521 66.667 2.24 0.00 36.18 3.71
680 713 2.852495 TTTCTCTCGCATCCGGCCAC 62.852 60.000 2.24 0.00 40.31 5.01
681 714 2.178876 TTTTCTCTCGCATCCGGCCA 62.179 55.000 2.24 0.00 40.31 5.36
682 715 0.815615 ATTTTCTCTCGCATCCGGCC 60.816 55.000 0.00 0.00 40.31 6.13
683 716 1.017387 AATTTTCTCTCGCATCCGGC 58.983 50.000 0.00 0.00 39.90 6.13
684 717 4.319766 CCATAAATTTTCTCTCGCATCCGG 60.320 45.833 0.00 0.00 34.56 5.14
685 718 4.319766 CCCATAAATTTTCTCTCGCATCCG 60.320 45.833 0.00 0.00 0.00 4.18
686 719 4.580580 ACCCATAAATTTTCTCTCGCATCC 59.419 41.667 0.00 0.00 0.00 3.51
687 720 5.296780 TGACCCATAAATTTTCTCTCGCATC 59.703 40.000 0.00 0.00 0.00 3.91
688 721 5.192927 TGACCCATAAATTTTCTCTCGCAT 58.807 37.500 0.00 0.00 0.00 4.73
689 722 4.584874 TGACCCATAAATTTTCTCTCGCA 58.415 39.130 0.00 0.00 0.00 5.10
690 723 5.757850 ATGACCCATAAATTTTCTCTCGC 57.242 39.130 0.00 0.00 0.00 5.03
691 724 7.088589 ACAATGACCCATAAATTTTCTCTCG 57.911 36.000 0.00 0.00 0.00 4.04
692 725 7.698130 CGAACAATGACCCATAAATTTTCTCTC 59.302 37.037 0.00 0.00 0.00 3.20
693 726 7.393234 TCGAACAATGACCCATAAATTTTCTCT 59.607 33.333 0.00 0.00 0.00 3.10
694 727 7.535139 TCGAACAATGACCCATAAATTTTCTC 58.465 34.615 0.00 0.00 0.00 2.87
695 728 7.393234 TCTCGAACAATGACCCATAAATTTTCT 59.607 33.333 0.00 0.00 0.00 2.52
696 729 7.535139 TCTCGAACAATGACCCATAAATTTTC 58.465 34.615 0.00 0.00 0.00 2.29
697 730 7.461182 TCTCGAACAATGACCCATAAATTTT 57.539 32.000 0.00 0.00 0.00 1.82
698 731 7.483307 CATCTCGAACAATGACCCATAAATTT 58.517 34.615 0.00 0.00 0.00 1.82
699 732 6.460123 GCATCTCGAACAATGACCCATAAATT 60.460 38.462 6.35 0.00 0.00 1.82
700 733 5.009010 GCATCTCGAACAATGACCCATAAAT 59.991 40.000 6.35 0.00 0.00 1.40
701 734 4.335315 GCATCTCGAACAATGACCCATAAA 59.665 41.667 6.35 0.00 0.00 1.40
702 735 3.876914 GCATCTCGAACAATGACCCATAA 59.123 43.478 6.35 0.00 0.00 1.90
703 736 3.466836 GCATCTCGAACAATGACCCATA 58.533 45.455 6.35 0.00 0.00 2.74
704 737 2.292267 GCATCTCGAACAATGACCCAT 58.708 47.619 6.35 0.00 0.00 4.00
705 738 1.678728 GGCATCTCGAACAATGACCCA 60.679 52.381 6.35 0.00 0.00 4.51
706 739 1.017387 GGCATCTCGAACAATGACCC 58.983 55.000 6.35 0.00 0.00 4.46
707 740 1.017387 GGGCATCTCGAACAATGACC 58.983 55.000 10.33 10.33 43.62 4.02
708 741 2.029838 AGGGCATCTCGAACAATGAC 57.970 50.000 6.35 3.46 0.00 3.06
709 742 2.787473 AAGGGCATCTCGAACAATGA 57.213 45.000 6.35 0.00 0.00 2.57
710 743 2.289002 GCTAAGGGCATCTCGAACAATG 59.711 50.000 0.00 0.00 41.35 2.82
711 744 2.565841 GCTAAGGGCATCTCGAACAAT 58.434 47.619 0.00 0.00 41.35 2.71
712 745 1.406887 GGCTAAGGGCATCTCGAACAA 60.407 52.381 0.00 0.00 44.01 2.83
713 746 0.178068 GGCTAAGGGCATCTCGAACA 59.822 55.000 0.00 0.00 44.01 3.18
714 747 0.533085 GGGCTAAGGGCATCTCGAAC 60.533 60.000 0.00 0.00 44.01 3.95
715 748 0.691078 AGGGCTAAGGGCATCTCGAA 60.691 55.000 0.00 0.00 44.01 3.71
716 749 0.691078 AAGGGCTAAGGGCATCTCGA 60.691 55.000 0.00 0.00 44.01 4.04
717 750 0.181350 AAAGGGCTAAGGGCATCTCG 59.819 55.000 0.00 0.00 44.01 4.04
718 751 1.685148 CAAAGGGCTAAGGGCATCTC 58.315 55.000 0.00 0.00 44.01 2.75
719 752 0.259938 CCAAAGGGCTAAGGGCATCT 59.740 55.000 0.00 0.00 44.01 2.90
720 753 0.756815 CCCAAAGGGCTAAGGGCATC 60.757 60.000 0.00 0.00 44.01 3.91
721 754 1.311059 CCCAAAGGGCTAAGGGCAT 59.689 57.895 0.00 0.00 44.01 4.40
722 755 2.770130 CCCAAAGGGCTAAGGGCA 59.230 61.111 0.00 0.00 44.01 5.36
732 765 1.262417 AAACCCGCAATACCCAAAGG 58.738 50.000 0.00 0.00 40.04 3.11
733 766 3.394674 AAAAACCCGCAATACCCAAAG 57.605 42.857 0.00 0.00 0.00 2.77
753 786 3.704061 CCCAAAGGTTGTCTCAGGAAAAA 59.296 43.478 0.00 0.00 0.00 1.94
754 787 3.295973 CCCAAAGGTTGTCTCAGGAAAA 58.704 45.455 0.00 0.00 0.00 2.29
755 788 2.944129 CCCAAAGGTTGTCTCAGGAAA 58.056 47.619 0.00 0.00 0.00 3.13
756 789 2.656947 CCCAAAGGTTGTCTCAGGAA 57.343 50.000 0.00 0.00 0.00 3.36
768 801 0.171007 CTGCACGCAATACCCAAAGG 59.829 55.000 0.00 0.00 40.04 3.11
769 802 0.171007 CCTGCACGCAATACCCAAAG 59.829 55.000 0.00 0.00 0.00 2.77
770 803 0.538516 ACCTGCACGCAATACCCAAA 60.539 50.000 0.00 0.00 0.00 3.28
771 804 1.074072 ACCTGCACGCAATACCCAA 59.926 52.632 0.00 0.00 0.00 4.12
772 805 1.673993 CACCTGCACGCAATACCCA 60.674 57.895 0.00 0.00 0.00 4.51
773 806 2.406616 CCACCTGCACGCAATACCC 61.407 63.158 0.00 0.00 0.00 3.69
774 807 1.241315 AACCACCTGCACGCAATACC 61.241 55.000 0.00 0.00 0.00 2.73
775 808 0.596082 AAACCACCTGCACGCAATAC 59.404 50.000 0.00 0.00 0.00 1.89
776 809 1.323412 AAAACCACCTGCACGCAATA 58.677 45.000 0.00 0.00 0.00 1.90
777 810 0.463620 AAAAACCACCTGCACGCAAT 59.536 45.000 0.00 0.00 0.00 3.56
778 811 1.893786 AAAAACCACCTGCACGCAA 59.106 47.368 0.00 0.00 0.00 4.85
779 812 3.609703 AAAAACCACCTGCACGCA 58.390 50.000 0.00 0.00 0.00 5.24
797 830 2.740826 CTCGGGAGCGCGGAAAAA 60.741 61.111 8.83 0.00 0.00 1.94
798 831 4.752879 CCTCGGGAGCGCGGAAAA 62.753 66.667 8.83 0.00 0.00 2.29
808 841 2.747686 GCACAAACCTCCTCGGGA 59.252 61.111 0.00 0.00 36.97 5.14
809 842 2.742372 CGCACAAACCTCCTCGGG 60.742 66.667 0.00 0.00 36.97 5.14
810 843 2.027625 GACGCACAAACCTCCTCGG 61.028 63.158 0.00 0.00 39.35 4.63
811 844 2.027625 GGACGCACAAACCTCCTCG 61.028 63.158 0.00 0.00 0.00 4.63
812 845 0.321653 ATGGACGCACAAACCTCCTC 60.322 55.000 0.00 0.00 0.00 3.71
813 846 0.606401 CATGGACGCACAAACCTCCT 60.606 55.000 0.00 0.00 0.00 3.69
814 847 0.889186 ACATGGACGCACAAACCTCC 60.889 55.000 0.00 0.00 0.00 4.30
815 848 0.951558 AACATGGACGCACAAACCTC 59.048 50.000 0.00 0.00 0.00 3.85
816 849 0.667993 CAACATGGACGCACAAACCT 59.332 50.000 0.00 0.00 0.00 3.50
817 850 0.318614 CCAACATGGACGCACAAACC 60.319 55.000 0.00 0.00 40.96 3.27
818 851 0.665835 TCCAACATGGACGCACAAAC 59.334 50.000 0.00 0.00 42.67 2.93
819 852 0.950836 CTCCAACATGGACGCACAAA 59.049 50.000 0.00 0.00 42.67 2.83
820 853 0.107643 TCTCCAACATGGACGCACAA 59.892 50.000 0.00 0.00 42.67 3.33
821 854 0.324614 ATCTCCAACATGGACGCACA 59.675 50.000 0.00 0.00 42.67 4.57
822 855 1.009829 GATCTCCAACATGGACGCAC 58.990 55.000 0.00 0.00 42.67 5.34
823 856 0.904649 AGATCTCCAACATGGACGCA 59.095 50.000 0.00 0.00 42.67 5.24
824 857 1.667724 CAAGATCTCCAACATGGACGC 59.332 52.381 0.00 0.00 42.67 5.19
825 858 2.093500 TCCAAGATCTCCAACATGGACG 60.093 50.000 7.37 0.00 42.67 4.79
826 859 3.274288 GTCCAAGATCTCCAACATGGAC 58.726 50.000 20.75 20.75 42.67 4.02
827 860 2.239654 GGTCCAAGATCTCCAACATGGA 59.760 50.000 7.37 7.37 45.98 3.41
828 861 2.240667 AGGTCCAAGATCTCCAACATGG 59.759 50.000 0.00 0.00 39.43 3.66
829 862 3.641434 AGGTCCAAGATCTCCAACATG 57.359 47.619 0.00 0.00 0.00 3.21
830 863 3.875369 GCAAGGTCCAAGATCTCCAACAT 60.875 47.826 0.00 0.00 0.00 2.71
831 864 2.553028 GCAAGGTCCAAGATCTCCAACA 60.553 50.000 0.00 0.00 0.00 3.33
832 865 2.087646 GCAAGGTCCAAGATCTCCAAC 58.912 52.381 0.00 0.00 0.00 3.77
833 866 1.704628 TGCAAGGTCCAAGATCTCCAA 59.295 47.619 0.00 0.00 0.00 3.53
834 867 1.280133 CTGCAAGGTCCAAGATCTCCA 59.720 52.381 0.00 0.00 0.00 3.86
835 868 1.280421 ACTGCAAGGTCCAAGATCTCC 59.720 52.381 0.00 0.00 39.30 3.71
836 869 2.746362 CAACTGCAAGGTCCAAGATCTC 59.254 50.000 0.00 0.00 39.30 2.75
837 870 2.553904 CCAACTGCAAGGTCCAAGATCT 60.554 50.000 0.00 0.00 39.30 2.75
838 871 1.815003 CCAACTGCAAGGTCCAAGATC 59.185 52.381 0.00 0.00 39.30 2.75
839 872 1.548582 CCCAACTGCAAGGTCCAAGAT 60.549 52.381 0.00 0.00 39.30 2.40
840 873 0.178992 CCCAACTGCAAGGTCCAAGA 60.179 55.000 0.00 0.00 39.30 3.02
841 874 1.809567 GCCCAACTGCAAGGTCCAAG 61.810 60.000 0.00 0.00 39.30 3.61
944 977 1.801765 GCGGAATCGGTGTAGTTCCTC 60.802 57.143 0.00 0.00 39.36 3.71
1147 1185 4.753662 TCCACCTCCTCCGGGTCG 62.754 72.222 0.00 0.00 34.44 4.79
1320 1542 6.178324 AGGCTTGGTATAAACTAAACAGACC 58.822 40.000 0.00 0.00 0.00 3.85
1337 1559 3.383620 TGTGCACATTTTAAGGCTTGG 57.616 42.857 17.42 0.00 0.00 3.61
1424 1646 7.148639 GCTTATCGCCAATTCTATAATTCGTCA 60.149 37.037 0.00 0.00 32.87 4.35
1497 1728 4.869861 ACTTCAAAACAAACCACTGATTGC 59.130 37.500 0.00 0.00 0.00 3.56
1498 1729 6.966435 AACTTCAAAACAAACCACTGATTG 57.034 33.333 0.00 0.00 0.00 2.67
1499 1730 6.371271 CCAAACTTCAAAACAAACCACTGATT 59.629 34.615 0.00 0.00 0.00 2.57
1500 1731 5.874261 CCAAACTTCAAAACAAACCACTGAT 59.126 36.000 0.00 0.00 0.00 2.90
1501 1732 5.011125 TCCAAACTTCAAAACAAACCACTGA 59.989 36.000 0.00 0.00 0.00 3.41
1502 1733 5.233988 TCCAAACTTCAAAACAAACCACTG 58.766 37.500 0.00 0.00 0.00 3.66
1503 1734 5.245075 TCTCCAAACTTCAAAACAAACCACT 59.755 36.000 0.00 0.00 0.00 4.00
1504 1735 5.347635 GTCTCCAAACTTCAAAACAAACCAC 59.652 40.000 0.00 0.00 0.00 4.16
1532 1763 1.754234 AGCGGCCATCCCAAACATC 60.754 57.895 2.24 0.00 0.00 3.06
1618 1849 3.059166 GGAAAACATTCACCATGTGTGC 58.941 45.455 8.87 0.00 46.23 4.57
1632 1863 7.450014 TGTTTTAGCAGGAATGATAGGAAAACA 59.550 33.333 0.00 0.00 40.19 2.83
1714 1963 0.795735 CAGCGGAAATTGCTCAAGCG 60.796 55.000 0.00 0.00 45.83 4.68
1965 2217 6.535963 AAGAATGAGTTCATCCCCATTTTC 57.464 37.500 0.00 0.00 36.79 2.29
2315 2656 5.163343 CGAGTAATTTGGAATGGAGGGAGTA 60.163 44.000 0.00 0.00 0.00 2.59
2316 2657 4.384208 CGAGTAATTTGGAATGGAGGGAGT 60.384 45.833 0.00 0.00 0.00 3.85
2317 2658 4.130118 CGAGTAATTTGGAATGGAGGGAG 58.870 47.826 0.00 0.00 0.00 4.30
2318 2659 3.521937 ACGAGTAATTTGGAATGGAGGGA 59.478 43.478 0.00 0.00 0.00 4.20
2319 2660 3.877508 GACGAGTAATTTGGAATGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2320 2661 3.555956 CGACGAGTAATTTGGAATGGAGG 59.444 47.826 0.00 0.00 0.00 4.30
2321 2662 4.032900 CACGACGAGTAATTTGGAATGGAG 59.967 45.833 0.00 0.00 0.00 3.86
2322 2663 3.930229 CACGACGAGTAATTTGGAATGGA 59.070 43.478 0.00 0.00 0.00 3.41
2323 2664 3.063452 CCACGACGAGTAATTTGGAATGG 59.937 47.826 0.00 0.00 0.00 3.16
2324 2665 3.682858 ACCACGACGAGTAATTTGGAATG 59.317 43.478 0.00 0.00 0.00 2.67
2325 2666 3.934068 ACCACGACGAGTAATTTGGAAT 58.066 40.909 0.00 0.00 0.00 3.01
2326 2667 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
2327 2668 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
2328 2669 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
2329 2670 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
2330 2671 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
2331 2672 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
2332 2673 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
2333 2674 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
2334 2675 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
2335 2676 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
2336 2677 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
2337 2678 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
2338 2679 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
2339 2680 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
2352 2693 8.191446 TCGTCATGGTTTTAGTTCAAATTTGAA 58.809 29.630 26.01 26.01 44.31 2.69
2353 2694 7.708051 TCGTCATGGTTTTAGTTCAAATTTGA 58.292 30.769 16.91 16.91 34.92 2.69
2354 2695 7.647715 ACTCGTCATGGTTTTAGTTCAAATTTG 59.352 33.333 12.15 12.15 0.00 2.32
2355 2696 7.712797 ACTCGTCATGGTTTTAGTTCAAATTT 58.287 30.769 0.00 0.00 0.00 1.82
2356 2697 7.272037 ACTCGTCATGGTTTTAGTTCAAATT 57.728 32.000 0.00 0.00 0.00 1.82
2357 2698 6.877611 ACTCGTCATGGTTTTAGTTCAAAT 57.122 33.333 0.00 0.00 0.00 2.32
2358 2699 7.789273 TTACTCGTCATGGTTTTAGTTCAAA 57.211 32.000 0.00 0.00 0.00 2.69
2359 2700 7.972832 ATTACTCGTCATGGTTTTAGTTCAA 57.027 32.000 0.00 0.00 0.00 2.69
2360 2701 7.972832 AATTACTCGTCATGGTTTTAGTTCA 57.027 32.000 0.00 0.00 0.00 3.18
2361 2702 7.749126 CCAAATTACTCGTCATGGTTTTAGTTC 59.251 37.037 0.00 0.00 0.00 3.01
2362 2703 7.446013 TCCAAATTACTCGTCATGGTTTTAGTT 59.554 33.333 0.00 0.00 0.00 2.24
2363 2704 6.938030 TCCAAATTACTCGTCATGGTTTTAGT 59.062 34.615 0.00 0.00 0.00 2.24
2364 2705 7.372451 TCCAAATTACTCGTCATGGTTTTAG 57.628 36.000 0.00 0.00 0.00 1.85
2365 2706 7.571613 CGTTCCAAATTACTCGTCATGGTTTTA 60.572 37.037 0.00 0.00 0.00 1.52
2366 2707 6.443792 GTTCCAAATTACTCGTCATGGTTTT 58.556 36.000 0.00 0.00 0.00 2.43
2367 2708 5.334569 CGTTCCAAATTACTCGTCATGGTTT 60.335 40.000 0.00 0.00 0.00 3.27
2368 2709 4.153475 CGTTCCAAATTACTCGTCATGGTT 59.847 41.667 0.00 0.00 0.00 3.67
2369 2710 3.682858 CGTTCCAAATTACTCGTCATGGT 59.317 43.478 0.00 0.00 0.00 3.55
2370 2711 3.063452 CCGTTCCAAATTACTCGTCATGG 59.937 47.826 0.00 0.00 0.00 3.66
2371 2712 3.930229 TCCGTTCCAAATTACTCGTCATG 59.070 43.478 0.00 0.00 0.00 3.07
2372 2713 4.181578 CTCCGTTCCAAATTACTCGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2373 2714 3.581755 CTCCGTTCCAAATTACTCGTCA 58.418 45.455 0.00 0.00 0.00 4.35
2374 2715 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2375 2716 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2376 2717 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2377 2718 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2378 2719 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2379 2720 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2380 2721 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
2381 2722 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
2382 2723 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
2383 2724 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2384 2725 1.621814 CAACTACTCCCTCCGTTCCAA 59.378 52.381 0.00 0.00 0.00 3.53
2385 2726 1.263356 CAACTACTCCCTCCGTTCCA 58.737 55.000 0.00 0.00 0.00 3.53
2386 2727 1.067071 CACAACTACTCCCTCCGTTCC 60.067 57.143 0.00 0.00 0.00 3.62
2387 2728 1.617357 ACACAACTACTCCCTCCGTTC 59.383 52.381 0.00 0.00 0.00 3.95
2388 2729 1.713297 ACACAACTACTCCCTCCGTT 58.287 50.000 0.00 0.00 0.00 4.44
2389 2730 2.592102 TACACAACTACTCCCTCCGT 57.408 50.000 0.00 0.00 0.00 4.69
2390 2731 3.021695 TCATACACAACTACTCCCTCCG 58.978 50.000 0.00 0.00 0.00 4.63
2391 2732 6.722129 AGATATCATACACAACTACTCCCTCC 59.278 42.308 5.32 0.00 0.00 4.30
2392 2733 7.231722 ACAGATATCATACACAACTACTCCCTC 59.768 40.741 5.32 0.00 0.00 4.30
2393 2734 7.069986 ACAGATATCATACACAACTACTCCCT 58.930 38.462 5.32 0.00 0.00 4.20
2394 2735 7.291411 ACAGATATCATACACAACTACTCCC 57.709 40.000 5.32 0.00 0.00 4.30
2395 2736 9.286170 TCTACAGATATCATACACAACTACTCC 57.714 37.037 5.32 0.00 0.00 3.85
2397 2738 9.854668 AGTCTACAGATATCATACACAACTACT 57.145 33.333 5.32 0.00 0.00 2.57
2828 3684 8.050778 TGGACAACATATCATAAACTGGAAAC 57.949 34.615 0.00 0.00 0.00 2.78
4269 6017 9.722056 GCCAATTTTAACAATCACTATCACTAG 57.278 33.333 0.00 0.00 0.00 2.57
4463 6409 5.605540 AGAGGCATTTGTATTATCCCCAT 57.394 39.130 0.00 0.00 0.00 4.00
4576 6577 6.043127 TGACTGAGCATACAATACACCCATAT 59.957 38.462 0.00 0.00 0.00 1.78
4581 6582 6.771188 GTATGACTGAGCATACAATACACC 57.229 41.667 16.62 0.00 46.20 4.16
5052 7118 1.741401 GGGTTACGGGGTTACACGC 60.741 63.158 0.00 0.00 0.00 5.34
5053 7119 0.390209 CAGGGTTACGGGGTTACACG 60.390 60.000 0.00 0.00 0.00 4.49
5081 7148 1.045350 CCCTGGATCTCTCGCCTTCA 61.045 60.000 0.00 0.00 0.00 3.02
5107 7174 3.805066 TTGATGTCATCCAAGTCCCAA 57.195 42.857 10.36 0.00 0.00 4.12
5108 7175 3.805066 TTTGATGTCATCCAAGTCCCA 57.195 42.857 10.36 0.00 0.00 4.37
5116 7183 4.601019 CGCCTAACAATTTGATGTCATCC 58.399 43.478 10.36 0.00 31.81 3.51
5140 7207 3.840890 TTGCCATCGCGAAAATAACTT 57.159 38.095 15.24 0.00 38.08 2.66
5141 7208 3.243068 GGATTGCCATCGCGAAAATAACT 60.243 43.478 15.24 0.00 38.08 2.24
5142 7209 3.042887 GGATTGCCATCGCGAAAATAAC 58.957 45.455 15.24 2.29 38.08 1.89
5143 7210 2.034053 GGGATTGCCATCGCGAAAATAA 59.966 45.455 15.24 7.32 38.08 1.40
5144 7211 1.606668 GGGATTGCCATCGCGAAAATA 59.393 47.619 15.24 0.00 38.08 1.40
5145 7212 0.385390 GGGATTGCCATCGCGAAAAT 59.615 50.000 15.24 11.09 38.08 1.82
5146 7213 0.962855 TGGGATTGCCATCGCGAAAA 60.963 50.000 15.24 6.10 43.80 2.29
5147 7214 0.962855 TTGGGATTGCCATCGCGAAA 60.963 50.000 15.24 2.34 43.80 3.46
5148 7215 0.751277 ATTGGGATTGCCATCGCGAA 60.751 50.000 15.24 0.00 43.80 4.70
5149 7216 1.152984 ATTGGGATTGCCATCGCGA 60.153 52.632 13.09 13.09 43.80 5.87
5216 7285 4.342665 GGTTGAAACAATTCCACTTGGGTA 59.657 41.667 0.00 0.00 38.11 3.69
5267 8344 7.510675 AGGTTTCAGATAAATGGAGGAACTA 57.489 36.000 0.00 0.00 41.55 2.24
5328 9855 2.167861 GCCGAGCTTTCTACCGCAG 61.168 63.158 0.00 0.00 0.00 5.18
5360 9913 1.004440 GTGAGGTCACAGGCTGTCC 60.004 63.158 19.13 17.11 45.75 4.02
5442 9995 1.133668 GCCCTGATCAATGGTAGGCTT 60.134 52.381 11.50 0.00 36.00 4.35
5449 10002 1.402968 CGTTTCAGCCCTGATCAATGG 59.597 52.381 0.00 1.39 39.64 3.16
5499 10053 6.015519 ACAGTGGATAGCATCTTCAGTATCTC 60.016 42.308 0.00 0.00 0.00 2.75
5576 10133 6.642131 TGATTTAAGTTGACTGGTGTACGTAC 59.358 38.462 18.90 18.90 0.00 3.67
5598 10155 4.398358 CAGGTGCTCAGATGAACAATTGAT 59.602 41.667 13.59 0.00 0.00 2.57
5784 10352 5.345702 CACCGTATTTATCTTCCGAACTCA 58.654 41.667 0.00 0.00 0.00 3.41
5796 10364 7.373778 GAAGAACAACTTCCACCGTATTTAT 57.626 36.000 0.00 0.00 46.48 1.40
5850 10418 2.297033 GCAAGCCATCCAGTTTCAGAAA 59.703 45.455 0.00 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.