Multiple sequence alignment - TraesCS6D01G332000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G332000 chr6D 100.000 3963 0 0 1 3963 434486192 434482230 0.000000e+00 7319
1 TraesCS6D01G332000 chr6A 89.211 3902 217 91 139 3963 581842728 581838954 0.000000e+00 4686
2 TraesCS6D01G332000 chr6B 97.569 2468 45 8 1501 3963 657652971 657650514 0.000000e+00 4211
3 TraesCS6D01G332000 chr6B 92.043 1106 51 10 139 1226 657654219 657653133 0.000000e+00 1520
4 TraesCS6D01G332000 chr4A 75.667 937 170 39 2034 2943 595936406 595937311 7.920000e-112 414


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G332000 chr6D 434482230 434486192 3962 True 7319.0 7319 100.000 1 3963 1 chr6D.!!$R1 3962
1 TraesCS6D01G332000 chr6A 581838954 581842728 3774 True 4686.0 4686 89.211 139 3963 1 chr6A.!!$R1 3824
2 TraesCS6D01G332000 chr6B 657650514 657654219 3705 True 2865.5 4211 94.806 139 3963 2 chr6B.!!$R1 3824
3 TraesCS6D01G332000 chr4A 595936406 595937311 905 False 414.0 414 75.667 2034 2943 1 chr4A.!!$F1 909

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
605 607 0.106719 TCCAATTCCTCCCGATTGGC 60.107 55.000 9.63 0.0 42.32 4.52 F
927 949 1.010125 CCTTTCGTGCCGTGTTGTG 60.010 57.895 0.00 0.0 0.00 3.33 F
1128 1150 4.159377 TGCCTTCGCAGTATTTTCTTTG 57.841 40.909 0.00 0.0 41.12 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2429 2485 1.076192 ACTCCTGCGGTACCTAGGG 60.076 63.158 24.1 18.6 32.39 3.53 R
2870 2943 1.735360 TGCAACAAAGCAGACAGGC 59.265 52.632 0.0 0.0 40.11 4.85 R
3090 3165 9.467258 TTTTTAATGACAGAATCAGAAGCAAAG 57.533 29.630 0.0 0.0 41.91 2.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.857437 ATTAGTTTTAGCTGCCAAGGATTT 57.143 33.333 0.00 0.00 0.00 2.17
24 25 6.664428 TTAGTTTTAGCTGCCAAGGATTTT 57.336 33.333 0.00 0.00 0.00 1.82
25 26 5.551305 AGTTTTAGCTGCCAAGGATTTTT 57.449 34.783 0.00 0.00 0.00 1.94
53 54 8.831715 AAGAATGTTGTGTTTTTCTTTCAAGT 57.168 26.923 0.00 0.00 35.46 3.16
54 55 8.831715 AGAATGTTGTGTTTTTCTTTCAAGTT 57.168 26.923 0.00 0.00 0.00 2.66
55 56 9.271828 AGAATGTTGTGTTTTTCTTTCAAGTTT 57.728 25.926 0.00 0.00 0.00 2.66
56 57 9.877137 GAATGTTGTGTTTTTCTTTCAAGTTTT 57.123 25.926 0.00 0.00 0.00 2.43
127 128 6.677781 TTTTCCTTGAAGTGTTCTGTAGTG 57.322 37.500 0.00 0.00 0.00 2.74
128 129 5.607939 TTCCTTGAAGTGTTCTGTAGTGA 57.392 39.130 0.00 0.00 0.00 3.41
129 130 5.808366 TCCTTGAAGTGTTCTGTAGTGAT 57.192 39.130 0.00 0.00 0.00 3.06
130 131 5.541845 TCCTTGAAGTGTTCTGTAGTGATG 58.458 41.667 0.00 0.00 0.00 3.07
131 132 4.153117 CCTTGAAGTGTTCTGTAGTGATGC 59.847 45.833 0.00 0.00 0.00 3.91
132 133 4.607293 TGAAGTGTTCTGTAGTGATGCT 57.393 40.909 0.00 0.00 0.00 3.79
133 134 4.960938 TGAAGTGTTCTGTAGTGATGCTT 58.039 39.130 0.00 0.00 0.00 3.91
134 135 5.368145 TGAAGTGTTCTGTAGTGATGCTTT 58.632 37.500 0.00 0.00 0.00 3.51
135 136 5.466728 TGAAGTGTTCTGTAGTGATGCTTTC 59.533 40.000 0.00 0.00 0.00 2.62
136 137 4.319177 AGTGTTCTGTAGTGATGCTTTCC 58.681 43.478 0.00 0.00 0.00 3.13
137 138 3.437049 GTGTTCTGTAGTGATGCTTTCCC 59.563 47.826 0.00 0.00 0.00 3.97
152 153 1.145571 TTCCCTTGTACAGCCCAACT 58.854 50.000 0.00 0.00 0.00 3.16
435 436 2.498167 GGATTCCATCTGATTCCACCG 58.502 52.381 0.00 0.00 41.31 4.94
439 440 2.747177 TCCATCTGATTCCACCGTACT 58.253 47.619 0.00 0.00 0.00 2.73
473 475 1.066358 GTCCAGTTTCGGAACCCTAGG 60.066 57.143 2.02 0.06 36.62 3.02
520 522 2.202440 CGTCGCGATGTTCCGAGT 60.202 61.111 20.17 0.00 33.71 4.18
555 557 1.537202 GTCGGCTTGATTTCACAGCTT 59.463 47.619 11.68 0.00 33.56 3.74
568 570 2.097038 CAGCTTCTTGGTCTCGGCG 61.097 63.158 0.00 0.00 0.00 6.46
605 607 0.106719 TCCAATTCCTCCCGATTGGC 60.107 55.000 9.63 0.00 42.32 4.52
646 648 1.887797 TATTCGTGGAATCACCCCCT 58.112 50.000 0.00 0.00 40.65 4.79
674 676 2.290082 GCGTTTGTTTTCCGCACGG 61.290 57.895 1.73 1.73 46.26 4.94
719 721 5.151389 CGAAAATTCGGGGAGTTTTAGTTG 58.849 41.667 7.64 0.00 46.30 3.16
779 781 5.904169 AGATCTTGAGATTTCAGATCTGGGA 59.096 40.000 22.42 11.64 41.49 4.37
828 832 5.299531 GGATTTGAATTGGGGTAACTAGAGC 59.700 44.000 0.00 0.00 0.00 4.09
829 833 3.536956 TGAATTGGGGTAACTAGAGCG 57.463 47.619 0.00 0.00 0.00 5.03
919 941 2.966309 CTTGTCGGCCTTTCGTGCC 61.966 63.158 0.00 0.00 45.70 5.01
926 948 2.830285 GCCTTTCGTGCCGTGTTGT 61.830 57.895 0.00 0.00 0.00 3.32
927 949 1.010125 CCTTTCGTGCCGTGTTGTG 60.010 57.895 0.00 0.00 0.00 3.33
1113 1135 5.915196 GTCAGTTTCATTACAGTTTGCCTTC 59.085 40.000 0.00 0.00 0.00 3.46
1128 1150 4.159377 TGCCTTCGCAGTATTTTCTTTG 57.841 40.909 0.00 0.00 41.12 2.77
1131 1153 5.106712 TGCCTTCGCAGTATTTTCTTTGTAG 60.107 40.000 0.00 0.00 41.12 2.74
1235 1258 9.590451 TTGGATCTTTGAAGCAAAATGATAATC 57.410 29.630 0.00 0.00 32.75 1.75
1296 1319 8.976986 AGATCTTTGAAGCAATTATGTTGTTC 57.023 30.769 0.00 0.00 0.00 3.18
1352 1375 8.996024 TTCATGTTTGAATCGTCTCTATGTAA 57.004 30.769 0.00 0.00 36.94 2.41
1353 1376 8.407457 TCATGTTTGAATCGTCTCTATGTAAC 57.593 34.615 0.00 0.00 0.00 2.50
1354 1377 8.251026 TCATGTTTGAATCGTCTCTATGTAACT 58.749 33.333 0.00 0.00 0.00 2.24
1355 1378 9.516314 CATGTTTGAATCGTCTCTATGTAACTA 57.484 33.333 0.00 0.00 0.00 2.24
1356 1379 9.737427 ATGTTTGAATCGTCTCTATGTAACTAG 57.263 33.333 0.00 0.00 0.00 2.57
1357 1380 8.188799 TGTTTGAATCGTCTCTATGTAACTAGG 58.811 37.037 0.00 0.00 0.00 3.02
1358 1381 8.404000 GTTTGAATCGTCTCTATGTAACTAGGA 58.596 37.037 0.00 0.00 0.00 2.94
1359 1382 8.693120 TTGAATCGTCTCTATGTAACTAGGAT 57.307 34.615 0.00 0.00 0.00 3.24
1360 1383 9.788889 TTGAATCGTCTCTATGTAACTAGGATA 57.211 33.333 0.00 0.00 0.00 2.59
1361 1384 9.217278 TGAATCGTCTCTATGTAACTAGGATAC 57.783 37.037 0.00 0.00 0.00 2.24
1362 1385 9.217278 GAATCGTCTCTATGTAACTAGGATACA 57.783 37.037 11.60 11.60 37.64 2.29
1363 1386 9.742144 AATCGTCTCTATGTAACTAGGATACAT 57.258 33.333 20.52 20.52 44.12 2.29
1364 1387 9.742144 ATCGTCTCTATGTAACTAGGATACATT 57.258 33.333 21.39 10.89 40.21 2.71
1365 1388 9.217278 TCGTCTCTATGTAACTAGGATACATTC 57.783 37.037 21.39 10.98 40.21 2.67
1366 1389 8.452534 CGTCTCTATGTAACTAGGATACATTCC 58.547 40.741 21.39 9.72 40.21 3.01
1683 1729 8.736244 GTTCCTTTGTAAATACTCAATGGCTTA 58.264 33.333 0.00 0.00 38.16 3.09
2168 2221 6.071896 TGTTATCTCATCCATGACCGTAGATC 60.072 42.308 0.00 0.00 32.50 2.75
2269 2322 4.250305 AGGTCGTGGTGGTGGTGC 62.250 66.667 0.00 0.00 0.00 5.01
2276 2329 4.204028 GGTGGTGGTGCTGGTGGT 62.204 66.667 0.00 0.00 0.00 4.16
2526 2584 6.613755 TTTGTTTAGGTTAGCTCTGTTGTC 57.386 37.500 0.00 0.00 0.00 3.18
2574 2639 9.436957 TGTTAAAAATGGTTGCTTGTTCTTTAA 57.563 25.926 0.00 0.00 0.00 1.52
2870 2943 5.936686 ATGCAGATTCTGTGGAAATATCG 57.063 39.130 14.90 0.00 34.90 2.92
2935 3009 4.021544 CCTATTCTCATACTGGACTGCTCC 60.022 50.000 0.00 0.00 37.04 4.70
2943 3017 2.936032 GGACTGCTCCCCCAGGTT 60.936 66.667 0.00 0.00 37.16 3.50
3150 3225 3.599343 GATGTGGTATGCAACTGAGACA 58.401 45.455 0.00 0.00 0.00 3.41
3440 3515 0.673437 ACCGGAGCATTGGTTTTGTG 59.327 50.000 9.46 0.00 33.81 3.33
3623 3698 4.949856 ACAGTTTTGTGGACTTCATCTTGT 59.050 37.500 0.00 0.00 35.83 3.16
3661 3748 3.983741 TCCATTTAAACAGTTTTGCGGG 58.016 40.909 3.25 2.38 0.00 6.13
3732 3837 2.184830 CACTGCACTGCACTGCACT 61.185 57.895 15.89 5.90 42.36 4.40
3733 3838 2.184830 ACTGCACTGCACTGCACTG 61.185 57.895 15.89 10.58 42.36 3.66
3734 3839 3.538028 CTGCACTGCACTGCACTGC 62.538 63.158 22.02 22.02 44.42 4.40
3735 3840 3.588906 GCACTGCACTGCACTGCA 61.589 61.111 23.20 18.27 43.91 4.41
3736 3841 2.916052 GCACTGCACTGCACTGCAT 61.916 57.895 23.20 8.84 46.05 3.96
3835 3964 0.738762 CTGCGTGCACTGCATAGTCT 60.739 55.000 27.77 0.00 41.91 3.24
3837 3966 0.459237 GCGTGCACTGCATAGTCTCT 60.459 55.000 22.75 0.00 41.91 3.10
3938 4067 6.767902 TGCTTTCTATATTAGGCAAGTCCTTG 59.232 38.462 2.63 2.63 44.75 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.857437 AAATCCTTGGCAGCTAAAACTAAT 57.143 33.333 0.00 0.00 0.00 1.73
1 2 6.664428 AAAATCCTTGGCAGCTAAAACTAA 57.336 33.333 0.00 0.00 0.00 2.24
2 3 6.664428 AAAAATCCTTGGCAGCTAAAACTA 57.336 33.333 0.00 0.00 0.00 2.24
3 4 5.551305 AAAAATCCTTGGCAGCTAAAACT 57.449 34.783 0.00 0.00 0.00 2.66
28 29 8.831715 ACTTGAAAGAAAAACACAACATTCTT 57.168 26.923 0.00 0.00 42.30 2.52
29 30 8.831715 AACTTGAAAGAAAAACACAACATTCT 57.168 26.923 0.00 0.00 33.73 2.40
30 31 9.877137 AAAACTTGAAAGAAAAACACAACATTC 57.123 25.926 0.00 0.00 0.00 2.67
103 104 6.882140 TCACTACAGAACACTTCAAGGAAAAA 59.118 34.615 0.00 0.00 0.00 1.94
104 105 6.411376 TCACTACAGAACACTTCAAGGAAAA 58.589 36.000 0.00 0.00 0.00 2.29
105 106 5.984725 TCACTACAGAACACTTCAAGGAAA 58.015 37.500 0.00 0.00 0.00 3.13
106 107 5.607939 TCACTACAGAACACTTCAAGGAA 57.392 39.130 0.00 0.00 0.00 3.36
107 108 5.541845 CATCACTACAGAACACTTCAAGGA 58.458 41.667 0.00 0.00 0.00 3.36
108 109 4.153117 GCATCACTACAGAACACTTCAAGG 59.847 45.833 0.00 0.00 0.00 3.61
109 110 4.993584 AGCATCACTACAGAACACTTCAAG 59.006 41.667 0.00 0.00 0.00 3.02
110 111 4.960938 AGCATCACTACAGAACACTTCAA 58.039 39.130 0.00 0.00 0.00 2.69
111 112 4.607293 AGCATCACTACAGAACACTTCA 57.393 40.909 0.00 0.00 0.00 3.02
112 113 5.106908 GGAAAGCATCACTACAGAACACTTC 60.107 44.000 0.00 0.00 0.00 3.01
113 114 4.757149 GGAAAGCATCACTACAGAACACTT 59.243 41.667 0.00 0.00 0.00 3.16
114 115 4.319177 GGAAAGCATCACTACAGAACACT 58.681 43.478 0.00 0.00 0.00 3.55
115 116 3.437049 GGGAAAGCATCACTACAGAACAC 59.563 47.826 0.00 0.00 0.00 3.32
116 117 3.327757 AGGGAAAGCATCACTACAGAACA 59.672 43.478 0.00 0.00 41.13 3.18
117 118 3.944087 AGGGAAAGCATCACTACAGAAC 58.056 45.455 0.00 0.00 41.13 3.01
118 119 4.202461 ACAAGGGAAAGCATCACTACAGAA 60.202 41.667 0.00 0.00 42.52 3.02
119 120 3.327757 ACAAGGGAAAGCATCACTACAGA 59.672 43.478 0.00 0.00 42.52 3.41
120 121 3.679389 ACAAGGGAAAGCATCACTACAG 58.321 45.455 0.00 0.00 42.52 2.74
121 122 3.788227 ACAAGGGAAAGCATCACTACA 57.212 42.857 0.00 0.00 42.52 2.74
122 123 4.575885 TGTACAAGGGAAAGCATCACTAC 58.424 43.478 0.00 0.00 42.52 2.73
123 124 4.832248 CTGTACAAGGGAAAGCATCACTA 58.168 43.478 0.00 0.00 42.52 2.74
124 125 3.679389 CTGTACAAGGGAAAGCATCACT 58.321 45.455 0.00 0.00 46.49 3.41
125 126 2.162408 GCTGTACAAGGGAAAGCATCAC 59.838 50.000 0.00 0.00 34.01 3.06
126 127 2.436417 GCTGTACAAGGGAAAGCATCA 58.564 47.619 0.00 0.00 34.01 3.07
127 128 1.745653 GGCTGTACAAGGGAAAGCATC 59.254 52.381 0.00 0.00 35.55 3.91
128 129 1.616994 GGGCTGTACAAGGGAAAGCAT 60.617 52.381 0.00 0.00 35.55 3.79
129 130 0.251165 GGGCTGTACAAGGGAAAGCA 60.251 55.000 0.00 0.00 35.55 3.91
130 131 0.251165 TGGGCTGTACAAGGGAAAGC 60.251 55.000 0.00 0.00 0.00 3.51
131 132 1.886542 GTTGGGCTGTACAAGGGAAAG 59.113 52.381 0.00 0.00 0.00 2.62
132 133 1.497286 AGTTGGGCTGTACAAGGGAAA 59.503 47.619 0.00 0.00 0.00 3.13
133 134 1.073284 GAGTTGGGCTGTACAAGGGAA 59.927 52.381 0.00 0.00 0.00 3.97
134 135 0.690762 GAGTTGGGCTGTACAAGGGA 59.309 55.000 0.00 0.00 0.00 4.20
135 136 0.400213 TGAGTTGGGCTGTACAAGGG 59.600 55.000 0.00 0.00 0.00 3.95
136 137 2.270352 TTGAGTTGGGCTGTACAAGG 57.730 50.000 0.00 0.00 0.00 3.61
137 138 4.142600 GCTTATTGAGTTGGGCTGTACAAG 60.143 45.833 0.00 0.00 0.00 3.16
152 153 3.388024 CACTGGGCTAGTAGGCTTATTGA 59.612 47.826 21.81 1.01 41.09 2.57
183 184 1.668793 CTGGTGAGATGCGTGCACA 60.669 57.895 18.64 0.00 34.33 4.57
435 436 2.547826 GACGCATGGAGGGTTAAGTAC 58.452 52.381 0.00 0.00 44.33 2.73
439 440 0.251916 CTGGACGCATGGAGGGTTAA 59.748 55.000 0.00 0.00 44.33 2.01
473 475 3.047877 CAACTGGCCGACGGGTTC 61.048 66.667 17.22 0.00 34.97 3.62
520 522 3.678921 CGACCAATCGCCCATCTAA 57.321 52.632 0.00 0.00 42.43 2.10
555 557 0.601841 GAAAACCGCCGAGACCAAGA 60.602 55.000 0.00 0.00 0.00 3.02
568 570 2.224354 TGGACTGAACCCGTAGAAAACC 60.224 50.000 0.00 0.00 0.00 3.27
605 607 2.489938 TCGAAGGATCCCCAAAACAG 57.510 50.000 8.55 0.00 33.88 3.16
646 648 4.143305 CGGAAAACAAACGCAAAAACTGAA 60.143 37.500 0.00 0.00 0.00 3.02
674 676 4.153835 CGACATCGAGATACTACCTAACCC 59.846 50.000 0.00 0.00 43.02 4.11
719 721 3.412386 ACACCAATTCAACTACAGCCTC 58.588 45.455 0.00 0.00 0.00 4.70
762 764 5.144100 TCCTAGTCCCAGATCTGAAATCTC 58.856 45.833 24.62 7.99 0.00 2.75
779 781 6.372659 CAGACAAACAGCAACAATATCCTAGT 59.627 38.462 0.00 0.00 0.00 2.57
828 832 1.734163 AGCAAATTCCCCGAACTACG 58.266 50.000 0.00 0.00 42.18 3.51
829 833 4.133013 TCTAGCAAATTCCCCGAACTAC 57.867 45.455 0.00 0.00 0.00 2.73
919 941 1.858458 CCGAGGTATATGCACAACACG 59.142 52.381 0.00 0.00 0.00 4.49
926 948 3.425122 TCGTCCCGAGGTATATGCA 57.575 52.632 0.00 0.00 0.00 3.96
1113 1135 5.873179 TTCCCTACAAAGAAAATACTGCG 57.127 39.130 0.00 0.00 0.00 5.18
1184 1207 4.842574 TCACTTTATAAGCACTGGCATGA 58.157 39.130 0.00 0.00 44.61 3.07
1235 1258 2.745821 AGCATAATCGCTGGCATACATG 59.254 45.455 0.00 0.00 41.85 3.21
1337 1360 9.742144 ATGTATCCTAGTTACATAGAGACGATT 57.258 33.333 11.80 0.00 38.25 3.34
1338 1361 9.742144 AATGTATCCTAGTTACATAGAGACGAT 57.258 33.333 13.18 0.00 38.91 3.73
1339 1362 9.217278 GAATGTATCCTAGTTACATAGAGACGA 57.783 37.037 13.18 0.00 38.91 4.20
1340 1363 8.452534 GGAATGTATCCTAGTTACATAGAGACG 58.547 40.741 13.18 0.00 45.56 4.18
1357 1380 7.772332 ACAAGTTACGAAGATGGAATGTATC 57.228 36.000 0.00 0.00 0.00 2.24
1358 1381 9.261180 CATACAAGTTACGAAGATGGAATGTAT 57.739 33.333 0.00 0.00 32.23 2.29
1359 1382 8.255206 ACATACAAGTTACGAAGATGGAATGTA 58.745 33.333 0.00 0.00 0.00 2.29
1360 1383 7.103641 ACATACAAGTTACGAAGATGGAATGT 58.896 34.615 0.00 0.00 0.00 2.71
1361 1384 7.539712 ACATACAAGTTACGAAGATGGAATG 57.460 36.000 0.00 0.00 0.00 2.67
1362 1385 7.822334 TGAACATACAAGTTACGAAGATGGAAT 59.178 33.333 0.00 0.00 0.00 3.01
1363 1386 7.156000 TGAACATACAAGTTACGAAGATGGAA 58.844 34.615 0.00 0.00 0.00 3.53
1364 1387 6.693466 TGAACATACAAGTTACGAAGATGGA 58.307 36.000 0.00 0.00 0.00 3.41
1365 1388 6.961359 TGAACATACAAGTTACGAAGATGG 57.039 37.500 0.00 0.00 0.00 3.51
1366 1389 8.279800 TGTTTGAACATACAAGTTACGAAGATG 58.720 33.333 0.00 0.00 33.17 2.90
1627 1672 5.791666 TCATCTCATCAGCTGAATGATACC 58.208 41.667 22.50 0.00 37.84 2.73
2429 2485 1.076192 ACTCCTGCGGTACCTAGGG 60.076 63.158 24.10 18.60 32.39 3.53
2495 2552 8.713271 CAGAGCTAACCTAAACAAAAGACTTAG 58.287 37.037 0.00 0.00 0.00 2.18
2574 2639 6.681729 TGTCATGGTAGGTAAAAGAACTCT 57.318 37.500 0.00 0.00 0.00 3.24
2870 2943 1.735360 TGCAACAAAGCAGACAGGC 59.265 52.632 0.00 0.00 40.11 4.85
3090 3165 9.467258 TTTTTAATGACAGAATCAGAAGCAAAG 57.533 29.630 0.00 0.00 41.91 2.77
3440 3515 4.442192 CCTTGTTGACTCCTGGCTCTATAC 60.442 50.000 0.00 0.00 0.00 1.47
3623 3698 2.525368 TGGATTGACTCTCGGTGAAGA 58.475 47.619 0.00 0.00 0.00 2.87
3732 3837 2.034878 AGATGAAGTCGAGCCTATGCA 58.965 47.619 0.00 0.00 41.13 3.96
3733 3838 2.810439 AGATGAAGTCGAGCCTATGC 57.190 50.000 0.00 0.00 37.95 3.14
3734 3839 4.313277 TGAAGATGAAGTCGAGCCTATG 57.687 45.455 0.00 0.00 0.00 2.23
3735 3840 4.832266 AGATGAAGATGAAGTCGAGCCTAT 59.168 41.667 0.00 0.00 0.00 2.57
3736 3841 4.037327 CAGATGAAGATGAAGTCGAGCCTA 59.963 45.833 0.00 0.00 0.00 3.93
3835 3964 1.004080 GCAGCAGGCAGAAGACAGA 60.004 57.895 0.00 0.00 43.97 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.