Multiple sequence alignment - TraesCS6D01G331600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G331600 chr6D 100.000 3859 0 0 1 3859 434439942 434443800 0.000000e+00 7127.0
1 TraesCS6D01G331600 chr6D 94.625 614 19 7 1 614 434339712 434340311 0.000000e+00 939.0
2 TraesCS6D01G331600 chr6D 93.080 448 28 3 293 739 61601259 61600814 0.000000e+00 652.0
3 TraesCS6D01G331600 chr6D 97.945 292 6 0 1 292 67059335 67059626 1.240000e-139 507.0
4 TraesCS6D01G331600 chr6D 96.949 295 9 0 2 296 356554832 356555126 2.680000e-136 496.0
5 TraesCS6D01G331600 chr6D 94.000 100 4 2 3348 3445 53678922 53678823 2.400000e-32 150.0
6 TraesCS6D01G331600 chr6D 97.674 86 2 0 3347 3432 65497171 65497086 8.640000e-32 148.0
7 TraesCS6D01G331600 chr6D 96.471 85 3 0 3348 3432 16703139 16703055 1.450000e-29 141.0
8 TraesCS6D01G331600 chr6D 95.455 88 4 0 3348 3435 95294989 95294902 1.450000e-29 141.0
9 TraesCS6D01G331600 chr6D 95.455 88 4 0 3347 3434 114587713 114587800 1.450000e-29 141.0
10 TraesCS6D01G331600 chr6D 92.708 96 7 0 3348 3443 373421964 373421869 5.200000e-29 139.0
11 TraesCS6D01G331600 chr6D 93.478 92 6 0 3348 3439 77298624 77298533 1.870000e-28 137.0
12 TraesCS6D01G331600 chr6A 90.596 2584 126 53 822 3349 581733085 581735607 0.000000e+00 3317.0
13 TraesCS6D01G331600 chr6A 88.630 343 23 5 3430 3761 581735614 581735951 1.670000e-108 403.0
14 TraesCS6D01G331600 chr6B 90.852 2241 97 51 738 2936 657089009 657091183 0.000000e+00 2904.0
15 TraesCS6D01G331600 chr6B 92.781 374 17 8 3001 3372 657091367 657091732 2.040000e-147 532.0
16 TraesCS6D01G331600 chr6B 91.875 160 12 1 3646 3804 657091783 657091942 5.020000e-54 222.0
17 TraesCS6D01G331600 chr6B 96.591 88 3 0 3346 3433 503547532 503547619 3.110000e-31 147.0
18 TraesCS6D01G331600 chr1B 93.274 446 30 0 293 738 330838253 330837808 0.000000e+00 658.0
19 TraesCS6D01G331600 chr1B 92.667 450 32 1 293 742 352332393 352331945 0.000000e+00 647.0
20 TraesCS6D01G331600 chr1B 85.099 302 24 8 3062 3349 381386878 381387172 4.880000e-74 289.0
21 TraesCS6D01G331600 chr1B 95.652 92 4 0 3348 3439 436383666 436383757 8.640000e-32 148.0
22 TraesCS6D01G331600 chr1B 90.541 74 7 0 3431 3504 381387171 381387244 8.820000e-17 99.0
23 TraesCS6D01G331600 chr3B 93.034 445 31 0 293 737 758628412 758628856 0.000000e+00 651.0
24 TraesCS6D01G331600 chr3B 85.397 630 83 6 123 744 40948295 40947667 0.000000e+00 645.0
25 TraesCS6D01G331600 chr3B 97.778 90 2 0 3346 3435 259911545 259911456 5.160000e-34 156.0
26 TraesCS6D01G331600 chr3B 92.381 105 5 2 3333 3435 215607034 215606931 3.110000e-31 147.0
27 TraesCS6D01G331600 chr3B 91.509 106 7 2 3330 3435 690430191 690430088 1.120000e-30 145.0
28 TraesCS6D01G331600 chr5B 92.841 447 32 0 293 739 530709713 530709267 0.000000e+00 649.0
29 TraesCS6D01G331600 chr5B 92.825 446 32 0 294 739 276897873 276897428 0.000000e+00 647.0
30 TraesCS6D01G331600 chr5B 86.424 302 24 6 3062 3349 141952644 141952346 8.050000e-82 315.0
31 TraesCS6D01G331600 chr5B 94.792 96 5 0 3344 3439 504177755 504177850 2.400000e-32 150.0
32 TraesCS6D01G331600 chr4B 92.683 451 30 3 293 742 546576041 546575593 0.000000e+00 647.0
33 TraesCS6D01G331600 chr4B 92.461 451 34 0 292 742 330749274 330748824 0.000000e+00 645.0
34 TraesCS6D01G331600 chr4B 95.699 93 4 0 3348 3440 507357688 507357780 2.400000e-32 150.0
35 TraesCS6D01G331600 chr4B 94.565 92 5 0 3344 3435 342857163 342857072 4.020000e-30 143.0
36 TraesCS6D01G331600 chr5D 97.945 292 6 0 1 292 270294472 270294763 1.240000e-139 507.0
37 TraesCS6D01G331600 chr5D 97.260 292 8 0 1 292 508595889 508595598 2.680000e-136 496.0
38 TraesCS6D01G331600 chr5D 87.086 302 22 6 3062 3349 129874834 129874536 3.720000e-85 326.0
39 TraesCS6D01G331600 chr5D 94.845 97 4 1 3337 3432 238555660 238555756 2.400000e-32 150.0
40 TraesCS6D01G331600 chr5D 95.604 91 3 1 3343 3432 378049114 378049204 1.120000e-30 145.0
41 TraesCS6D01G331600 chr5D 91.919 99 8 0 3346 3444 556868484 556868386 5.200000e-29 139.0
42 TraesCS6D01G331600 chr4D 97.603 292 7 0 1 292 423964372 423964663 5.760000e-138 501.0
43 TraesCS6D01G331600 chr4D 95.506 89 4 0 3348 3436 225215525 225215613 4.020000e-30 143.0
44 TraesCS6D01G331600 chr4D 93.548 93 6 0 3343 3435 39209499 39209591 5.200000e-29 139.0
45 TraesCS6D01G331600 chr4D 93.478 92 6 0 3348 3439 190654037 190653946 1.870000e-28 137.0
46 TraesCS6D01G331600 chr7D 97.260 292 8 0 1 292 255323786 255324077 2.680000e-136 496.0
47 TraesCS6D01G331600 chr7D 97.674 86 2 0 3347 3432 633397720 633397805 8.640000e-32 148.0
48 TraesCS6D01G331600 chr1D 97.260 292 8 0 1 292 8938381 8938090 2.680000e-136 496.0
49 TraesCS6D01G331600 chr1D 85.099 302 24 8 3062 3349 280686656 280686950 4.880000e-74 289.0
50 TraesCS6D01G331600 chr1D 96.512 86 3 0 3348 3433 451135473 451135388 4.020000e-30 143.0
51 TraesCS6D01G331600 chr1D 96.471 85 3 0 3348 3432 243753383 243753299 1.450000e-29 141.0
52 TraesCS6D01G331600 chr1D 89.333 75 7 1 3431 3504 280686949 280687023 4.110000e-15 93.5
53 TraesCS6D01G331600 chr1A 86.364 308 29 7 3052 3349 551543861 551543557 1.340000e-84 324.0
54 TraesCS6D01G331600 chr1A 85.099 302 24 8 3062 3349 352857103 352857397 4.880000e-74 289.0
55 TraesCS6D01G331600 chr1A 93.750 96 4 2 3338 3432 533694060 533694154 4.020000e-30 143.0
56 TraesCS6D01G331600 chr1A 89.189 74 8 0 3431 3504 352857396 352857469 4.110000e-15 93.5
57 TraesCS6D01G331600 chr5A 85.149 303 23 7 3062 3350 145748106 145747812 1.360000e-74 291.0
58 TraesCS6D01G331600 chr5A 96.774 93 1 2 3347 3438 64382190 64382099 1.860000e-33 154.0
59 TraesCS6D01G331600 chr3A 97.753 89 2 0 3345 3433 168540418 168540330 1.860000e-33 154.0
60 TraesCS6D01G331600 chr3A 93.814 97 5 1 3348 3443 436662064 436662160 1.120000e-30 145.0
61 TraesCS6D01G331600 chr2B 97.753 89 2 0 3348 3436 435504955 435504867 1.860000e-33 154.0
62 TraesCS6D01G331600 chr7A 95.699 93 4 0 3348 3440 126927316 126927408 2.400000e-32 150.0
63 TraesCS6D01G331600 chrUn 96.471 85 3 0 3348 3432 100223739 100223823 1.450000e-29 141.0
64 TraesCS6D01G331600 chrUn 96.471 85 3 0 3348 3432 110002989 110002905 1.450000e-29 141.0
65 TraesCS6D01G331600 chrUn 95.402 87 4 0 3347 3433 81299913 81299999 5.200000e-29 139.0
66 TraesCS6D01G331600 chrUn 95.402 87 4 0 3346 3432 222975768 222975854 5.200000e-29 139.0
67 TraesCS6D01G331600 chrUn 95.402 87 4 0 3346 3432 303647902 303647988 5.200000e-29 139.0
68 TraesCS6D01G331600 chrUn 95.294 85 4 0 3348 3432 17103851 17103767 6.730000e-28 135.0
69 TraesCS6D01G331600 chrUn 95.294 85 4 0 3348 3432 17126195 17126111 6.730000e-28 135.0
70 TraesCS6D01G331600 chrUn 95.294 85 4 0 3348 3432 75308385 75308469 6.730000e-28 135.0
71 TraesCS6D01G331600 chrUn 95.294 85 4 0 3348 3432 242405295 242405211 6.730000e-28 135.0
72 TraesCS6D01G331600 chrUn 93.333 90 6 0 3347 3436 336469296 336469385 2.420000e-27 134.0
73 TraesCS6D01G331600 chrUn 91.667 96 7 1 3348 3442 397152056 397151961 8.700000e-27 132.0
74 TraesCS6D01G331600 chrUn 89.423 104 6 5 3345 3447 108256470 108256371 4.050000e-25 126.0
75 TraesCS6D01G331600 chr3D 92.079 101 7 1 3346 3446 562693532 562693631 1.450000e-29 141.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G331600 chr6D 434439942 434443800 3858 False 7127.000000 7127 100.000 1 3859 1 chr6D.!!$F5 3858
1 TraesCS6D01G331600 chr6D 434339712 434340311 599 False 939.000000 939 94.625 1 614 1 chr6D.!!$F4 613
2 TraesCS6D01G331600 chr6A 581733085 581735951 2866 False 1860.000000 3317 89.613 822 3761 2 chr6A.!!$F1 2939
3 TraesCS6D01G331600 chr6B 657089009 657091942 2933 False 1219.333333 2904 91.836 738 3804 3 chr6B.!!$F2 3066
4 TraesCS6D01G331600 chr3B 40947667 40948295 628 True 645.000000 645 85.397 123 744 1 chr3B.!!$R1 621

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
789 795 0.108233 GCAGGGAGACTCTCAAGCTG 60.108 60.0 4.85 0.0 31.08 4.24 F
1911 1956 0.108756 GGAACTCGGTAGCACCTGAC 60.109 60.0 4.21 0.0 35.66 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2457 2502 0.031716 TCTGCAGGAGGTAGATGGCT 60.032 55.0 15.13 0.00 32.9 4.75 R
3807 4029 0.164432 TACTCGTGTGTGTACGCTCG 59.836 55.0 8.10 12.23 43.4 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.434652 TCTTGTTGACACAAACCCTTTTTCTA 59.565 34.615 0.00 0.00 42.53 2.10
48 49 6.591750 TGACACAAACCCTTTTTCTAAACA 57.408 33.333 0.00 0.00 0.00 2.83
402 408 3.564644 GTCTCCGACGGATCTATCTTTGA 59.435 47.826 18.71 4.75 0.00 2.69
436 442 3.242673 GGATCTCGTCGTTGTTCGTCTAT 60.243 47.826 0.00 0.00 40.80 1.98
492 498 7.198306 TCTACGTTATTCTTCATCTGCGATA 57.802 36.000 0.00 0.00 0.00 2.92
519 525 2.125512 CTGGTGCGCTGGTCCTAC 60.126 66.667 9.73 0.00 0.00 3.18
532 538 1.041437 GTCCTACGAGGCCTTAGCAT 58.959 55.000 6.77 0.00 42.56 3.79
562 568 3.254166 TCCCGACTGTCTACTACAACAAC 59.746 47.826 6.21 0.00 37.74 3.32
576 582 0.818040 AACAACTTGTGCCCGACTCC 60.818 55.000 0.00 0.00 0.00 3.85
577 583 2.030562 AACTTGTGCCCGACTCCG 59.969 61.111 0.00 0.00 0.00 4.63
593 599 3.606662 CGGCGATGGAGGGACGAT 61.607 66.667 0.00 0.00 0.00 3.73
594 600 2.029666 GGCGATGGAGGGACGATG 59.970 66.667 0.00 0.00 0.00 3.84
595 601 2.498941 GGCGATGGAGGGACGATGA 61.499 63.158 0.00 0.00 0.00 2.92
596 602 1.300233 GCGATGGAGGGACGATGAC 60.300 63.158 0.00 0.00 0.00 3.06
597 603 1.008424 CGATGGAGGGACGATGACG 60.008 63.158 0.00 0.00 45.75 4.35
598 604 1.364171 GATGGAGGGACGATGACGG 59.636 63.158 0.00 0.00 44.46 4.79
622 628 3.191539 GCCTTCGGCTCGCTTCAG 61.192 66.667 0.00 0.00 46.69 3.02
623 629 2.262915 CCTTCGGCTCGCTTCAGT 59.737 61.111 0.00 0.00 0.00 3.41
624 630 2.097038 CCTTCGGCTCGCTTCAGTG 61.097 63.158 0.00 0.00 0.00 3.66
625 631 2.734673 CTTCGGCTCGCTTCAGTGC 61.735 63.158 0.00 0.00 0.00 4.40
626 632 3.226429 TTCGGCTCGCTTCAGTGCT 62.226 57.895 0.00 0.00 0.00 4.40
627 633 2.715532 TTCGGCTCGCTTCAGTGCTT 62.716 55.000 0.00 0.00 0.00 3.91
628 634 2.866028 GGCTCGCTTCAGTGCTTG 59.134 61.111 0.00 0.00 0.00 4.01
629 635 1.963338 GGCTCGCTTCAGTGCTTGT 60.963 57.895 0.00 0.00 0.00 3.16
630 636 0.670546 GGCTCGCTTCAGTGCTTGTA 60.671 55.000 0.00 0.00 0.00 2.41
631 637 0.718343 GCTCGCTTCAGTGCTTGTAG 59.282 55.000 0.00 0.00 0.00 2.74
632 638 1.937108 GCTCGCTTCAGTGCTTGTAGT 60.937 52.381 0.00 0.00 0.00 2.73
633 639 1.989165 CTCGCTTCAGTGCTTGTAGTC 59.011 52.381 0.00 0.00 0.00 2.59
634 640 0.710567 CGCTTCAGTGCTTGTAGTCG 59.289 55.000 0.00 0.00 0.00 4.18
635 641 1.784525 GCTTCAGTGCTTGTAGTCGT 58.215 50.000 0.00 0.00 0.00 4.34
636 642 1.721926 GCTTCAGTGCTTGTAGTCGTC 59.278 52.381 0.00 0.00 0.00 4.20
637 643 1.979469 CTTCAGTGCTTGTAGTCGTCG 59.021 52.381 0.00 0.00 0.00 5.12
638 644 0.386858 TCAGTGCTTGTAGTCGTCGC 60.387 55.000 0.00 0.00 0.00 5.19
639 645 0.387367 CAGTGCTTGTAGTCGTCGCT 60.387 55.000 0.00 0.00 0.00 4.93
640 646 1.135774 CAGTGCTTGTAGTCGTCGCTA 60.136 52.381 0.00 0.00 0.00 4.26
641 647 1.130749 AGTGCTTGTAGTCGTCGCTAG 59.869 52.381 0.00 0.00 0.00 3.42
642 648 0.450583 TGCTTGTAGTCGTCGCTAGG 59.549 55.000 0.00 0.00 0.00 3.02
643 649 0.450983 GCTTGTAGTCGTCGCTAGGT 59.549 55.000 0.00 0.00 0.00 3.08
644 650 1.794437 GCTTGTAGTCGTCGCTAGGTG 60.794 57.143 0.00 0.00 0.00 4.00
645 651 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
646 652 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
647 653 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
648 654 0.745845 TAGTCGTCGCTAGGTGGTCC 60.746 60.000 0.00 0.00 0.00 4.46
649 655 2.034532 TCGTCGCTAGGTGGTCCA 59.965 61.111 0.00 0.00 35.89 4.02
650 656 2.181021 CGTCGCTAGGTGGTCCAC 59.819 66.667 14.13 14.13 35.89 4.02
651 657 2.181021 GTCGCTAGGTGGTCCACG 59.819 66.667 15.93 4.19 34.83 4.94
652 658 3.066190 TCGCTAGGTGGTCCACGG 61.066 66.667 15.93 9.48 34.83 4.94
653 659 3.066190 CGCTAGGTGGTCCACGGA 61.066 66.667 15.93 5.18 34.83 4.69
654 660 2.423898 CGCTAGGTGGTCCACGGAT 61.424 63.158 15.93 7.04 34.83 4.18
655 661 1.442148 GCTAGGTGGTCCACGGATC 59.558 63.158 15.93 1.90 34.83 3.36
656 662 1.043673 GCTAGGTGGTCCACGGATCT 61.044 60.000 15.93 9.53 34.83 2.75
657 663 1.753141 GCTAGGTGGTCCACGGATCTA 60.753 57.143 15.93 10.15 34.83 1.98
658 664 2.231529 CTAGGTGGTCCACGGATCTAG 58.768 57.143 15.93 15.27 34.83 2.43
659 665 0.629596 AGGTGGTCCACGGATCTAGA 59.370 55.000 15.93 0.00 34.83 2.43
660 666 1.218196 AGGTGGTCCACGGATCTAGAT 59.782 52.381 15.93 4.47 34.83 1.98
661 667 1.341531 GGTGGTCCACGGATCTAGATG 59.658 57.143 15.93 0.00 34.83 2.90
662 668 2.032620 GTGGTCCACGGATCTAGATGT 58.967 52.381 10.74 0.00 0.00 3.06
663 669 3.220110 GTGGTCCACGGATCTAGATGTA 58.780 50.000 10.74 0.00 0.00 2.29
664 670 3.635373 GTGGTCCACGGATCTAGATGTAA 59.365 47.826 10.74 0.00 0.00 2.41
665 671 4.281182 GTGGTCCACGGATCTAGATGTAAT 59.719 45.833 10.74 0.00 0.00 1.89
666 672 4.899457 TGGTCCACGGATCTAGATGTAATT 59.101 41.667 10.74 0.00 0.00 1.40
667 673 5.365605 TGGTCCACGGATCTAGATGTAATTT 59.634 40.000 10.74 0.00 0.00 1.82
668 674 6.126883 TGGTCCACGGATCTAGATGTAATTTT 60.127 38.462 10.74 0.00 0.00 1.82
669 675 6.766467 GGTCCACGGATCTAGATGTAATTTTT 59.234 38.462 10.74 0.00 0.00 1.94
670 676 7.929785 GGTCCACGGATCTAGATGTAATTTTTA 59.070 37.037 10.74 0.00 0.00 1.52
671 677 9.490379 GTCCACGGATCTAGATGTAATTTTTAT 57.510 33.333 10.74 0.00 0.00 1.40
694 700 9.537192 TTATTATTCCTGGTATTCGTTGTACTG 57.463 33.333 0.00 0.00 0.00 2.74
695 701 3.241067 TCCTGGTATTCGTTGTACTGC 57.759 47.619 0.00 0.00 0.00 4.40
696 702 2.093869 TCCTGGTATTCGTTGTACTGCC 60.094 50.000 0.00 0.00 0.00 4.85
697 703 2.354303 CCTGGTATTCGTTGTACTGCCA 60.354 50.000 0.00 0.00 0.00 4.92
698 704 3.531538 CTGGTATTCGTTGTACTGCCAT 58.468 45.455 0.00 0.00 0.00 4.40
699 705 3.266636 TGGTATTCGTTGTACTGCCATG 58.733 45.455 0.00 0.00 0.00 3.66
700 706 3.055747 TGGTATTCGTTGTACTGCCATGA 60.056 43.478 0.00 0.00 0.00 3.07
701 707 3.308866 GGTATTCGTTGTACTGCCATGAC 59.691 47.826 0.00 0.00 0.00 3.06
702 708 2.831685 TTCGTTGTACTGCCATGACT 57.168 45.000 0.00 0.00 0.00 3.41
703 709 2.078849 TCGTTGTACTGCCATGACTG 57.921 50.000 0.00 0.00 0.00 3.51
704 710 1.616374 TCGTTGTACTGCCATGACTGA 59.384 47.619 0.00 0.00 0.00 3.41
705 711 2.036604 TCGTTGTACTGCCATGACTGAA 59.963 45.455 0.00 0.00 0.00 3.02
706 712 2.805671 CGTTGTACTGCCATGACTGAAA 59.194 45.455 0.00 0.00 0.00 2.69
707 713 3.249799 CGTTGTACTGCCATGACTGAAAA 59.750 43.478 0.00 0.00 0.00 2.29
708 714 4.083324 CGTTGTACTGCCATGACTGAAAAT 60.083 41.667 0.00 0.00 0.00 1.82
709 715 5.156355 GTTGTACTGCCATGACTGAAAATG 58.844 41.667 0.00 0.00 0.00 2.32
710 716 4.650734 TGTACTGCCATGACTGAAAATGA 58.349 39.130 0.00 0.00 0.00 2.57
711 717 5.069318 TGTACTGCCATGACTGAAAATGAA 58.931 37.500 0.00 0.00 0.00 2.57
712 718 5.711506 TGTACTGCCATGACTGAAAATGAAT 59.288 36.000 0.00 0.00 0.00 2.57
713 719 6.883756 TGTACTGCCATGACTGAAAATGAATA 59.116 34.615 0.00 0.00 0.00 1.75
714 720 6.446781 ACTGCCATGACTGAAAATGAATAG 57.553 37.500 0.00 0.00 0.00 1.73
715 721 6.182627 ACTGCCATGACTGAAAATGAATAGA 58.817 36.000 0.00 0.00 0.00 1.98
716 722 6.832384 ACTGCCATGACTGAAAATGAATAGAT 59.168 34.615 0.00 0.00 0.00 1.98
717 723 7.013083 ACTGCCATGACTGAAAATGAATAGATC 59.987 37.037 0.00 0.00 0.00 2.75
718 724 6.017687 TGCCATGACTGAAAATGAATAGATCG 60.018 38.462 0.00 0.00 0.00 3.69
719 725 6.567321 GCCATGACTGAAAATGAATAGATCGG 60.567 42.308 0.00 0.00 0.00 4.18
720 726 6.707608 CCATGACTGAAAATGAATAGATCGGA 59.292 38.462 0.00 0.00 0.00 4.55
721 727 7.227314 CCATGACTGAAAATGAATAGATCGGAA 59.773 37.037 0.00 0.00 0.00 4.30
722 728 8.615211 CATGACTGAAAATGAATAGATCGGAAA 58.385 33.333 0.00 0.00 0.00 3.13
723 729 8.737168 TGACTGAAAATGAATAGATCGGAAAT 57.263 30.769 0.00 0.00 0.00 2.17
724 730 9.830975 TGACTGAAAATGAATAGATCGGAAATA 57.169 29.630 0.00 0.00 0.00 1.40
762 768 9.680315 AAATTATTTTACCGAGAGAGAGATACG 57.320 33.333 0.00 0.00 0.00 3.06
789 795 0.108233 GCAGGGAGACTCTCAAGCTG 60.108 60.000 4.85 0.00 31.08 4.24
796 802 4.633565 GGGAGACTCTCAAGCTGTTATTTG 59.366 45.833 8.35 0.00 31.08 2.32
802 808 6.064717 ACTCTCAAGCTGTTATTTGAAAGGT 58.935 36.000 0.00 0.00 33.30 3.50
819 825 5.526111 TGAAAGGTAGGCGCATATTTTAGTC 59.474 40.000 10.83 1.77 0.00 2.59
828 834 5.390991 GGCGCATATTTTAGTCTTCATAGCC 60.391 44.000 10.83 0.00 0.00 3.93
846 852 1.767289 CCGATAGCGTGATACCACAC 58.233 55.000 0.00 0.00 43.34 3.82
860 866 1.060308 CACACGGGCGAATAAAGCG 59.940 57.895 0.00 0.00 35.00 4.68
990 1002 1.446272 CGAACCTCCTCAACTCGCC 60.446 63.158 0.00 0.00 0.00 5.54
1094 1112 2.040813 CCATCCGAGATCCCAAATCCAT 59.959 50.000 0.00 0.00 0.00 3.41
1097 1115 1.609061 CCGAGATCCCAAATCCATCCG 60.609 57.143 0.00 0.00 0.00 4.18
1403 1421 4.697756 TTCCCCAAGTCCAGCGCG 62.698 66.667 0.00 0.00 0.00 6.86
1644 1662 2.263540 GAACCGCCGCTTCAGGTA 59.736 61.111 0.00 0.00 37.26 3.08
1645 1663 1.810030 GAACCGCCGCTTCAGGTAG 60.810 63.158 0.00 0.00 37.26 3.18
1664 1691 3.686916 AGTACCTCTGTTTCTCTTGGC 57.313 47.619 0.00 0.00 0.00 4.52
1665 1692 2.972713 AGTACCTCTGTTTCTCTTGGCA 59.027 45.455 0.00 0.00 0.00 4.92
1666 1693 2.262423 ACCTCTGTTTCTCTTGGCAC 57.738 50.000 0.00 0.00 0.00 5.01
1667 1694 1.151668 CCTCTGTTTCTCTTGGCACG 58.848 55.000 0.00 0.00 0.00 5.34
1668 1695 1.541233 CCTCTGTTTCTCTTGGCACGT 60.541 52.381 0.00 0.00 0.00 4.49
1671 1698 2.354510 TCTGTTTCTCTTGGCACGTTTG 59.645 45.455 0.00 0.00 0.00 2.93
1672 1699 2.088423 TGTTTCTCTTGGCACGTTTGT 58.912 42.857 0.00 0.00 0.00 2.83
1674 1701 3.105937 GTTTCTCTTGGCACGTTTGTTC 58.894 45.455 0.00 0.00 0.00 3.18
1676 1703 1.939934 TCTCTTGGCACGTTTGTTCTG 59.060 47.619 0.00 0.00 0.00 3.02
1677 1704 0.380378 TCTTGGCACGTTTGTTCTGC 59.620 50.000 0.00 0.00 0.00 4.26
1680 1707 2.485795 GGCACGTTTGTTCTGCCCA 61.486 57.895 0.00 0.00 44.15 5.36
1681 1708 1.008538 GCACGTTTGTTCTGCCCAG 60.009 57.895 0.00 0.00 0.00 4.45
1683 1710 0.307760 CACGTTTGTTCTGCCCAGTC 59.692 55.000 0.00 0.00 0.00 3.51
1684 1711 1.157870 ACGTTTGTTCTGCCCAGTCG 61.158 55.000 0.00 0.00 0.00 4.18
1685 1712 1.157870 CGTTTGTTCTGCCCAGTCGT 61.158 55.000 0.00 0.00 0.00 4.34
1689 1716 0.531974 TGTTCTGCCCAGTCGTGTTC 60.532 55.000 0.00 0.00 0.00 3.18
1690 1717 0.249911 GTTCTGCCCAGTCGTGTTCT 60.250 55.000 0.00 0.00 0.00 3.01
1691 1718 0.249868 TTCTGCCCAGTCGTGTTCTG 60.250 55.000 0.00 0.00 0.00 3.02
1694 1721 0.531974 TGCCCAGTCGTGTTCTGTTC 60.532 55.000 0.00 0.00 0.00 3.18
1695 1722 0.249911 GCCCAGTCGTGTTCTGTTCT 60.250 55.000 0.00 0.00 0.00 3.01
1706 1733 6.641314 GTCGTGTTCTGTTCTTCTCTGAATTA 59.359 38.462 0.00 0.00 0.00 1.40
1707 1734 7.329717 GTCGTGTTCTGTTCTTCTCTGAATTAT 59.670 37.037 0.00 0.00 0.00 1.28
1708 1735 7.872993 TCGTGTTCTGTTCTTCTCTGAATTATT 59.127 33.333 0.00 0.00 0.00 1.40
1709 1736 7.954248 CGTGTTCTGTTCTTCTCTGAATTATTG 59.046 37.037 0.00 0.00 0.00 1.90
1711 1738 6.992063 TCTGTTCTTCTCTGAATTATTGCC 57.008 37.500 0.00 0.00 0.00 4.52
1712 1739 5.882557 TCTGTTCTTCTCTGAATTATTGCCC 59.117 40.000 0.00 0.00 0.00 5.36
1725 1754 2.808906 ATTGCCCCTAGAAACTGGTC 57.191 50.000 0.00 0.00 0.00 4.02
1729 1758 0.912486 CCCCTAGAAACTGGTCTGGG 59.088 60.000 6.17 6.17 43.99 4.45
1730 1759 0.253327 CCCTAGAAACTGGTCTGGGC 59.747 60.000 7.30 0.00 43.24 5.36
1734 1763 0.250338 AGAAACTGGTCTGGGCGTTC 60.250 55.000 0.00 0.00 0.00 3.95
1748 1777 1.464189 GGCGTTCGTTCAGAAATCAGC 60.464 52.381 0.00 0.00 41.10 4.26
1751 1780 2.411547 CGTTCGTTCAGAAATCAGCCAC 60.412 50.000 0.00 0.00 41.10 5.01
1754 1783 1.466167 CGTTCAGAAATCAGCCACCAG 59.534 52.381 0.00 0.00 0.00 4.00
1756 1785 3.350833 GTTCAGAAATCAGCCACCAGAT 58.649 45.455 0.00 0.00 0.00 2.90
1757 1786 3.726557 TCAGAAATCAGCCACCAGATT 57.273 42.857 0.00 0.00 36.09 2.40
1762 1802 2.885135 ATCAGCCACCAGATTGACAA 57.115 45.000 0.00 0.00 0.00 3.18
1774 1814 3.930336 AGATTGACAAATCGAGCTGACA 58.070 40.909 0.00 1.21 45.84 3.58
1775 1815 4.318332 AGATTGACAAATCGAGCTGACAA 58.682 39.130 13.72 13.72 45.84 3.18
1776 1816 4.391216 AGATTGACAAATCGAGCTGACAAG 59.609 41.667 15.59 0.00 45.84 3.16
1777 1817 3.385193 TGACAAATCGAGCTGACAAGA 57.615 42.857 0.00 0.00 0.00 3.02
1778 1818 3.320626 TGACAAATCGAGCTGACAAGAG 58.679 45.455 0.00 0.00 0.00 2.85
1779 1819 3.243873 TGACAAATCGAGCTGACAAGAGT 60.244 43.478 0.00 0.00 0.00 3.24
1780 1820 4.022329 TGACAAATCGAGCTGACAAGAGTA 60.022 41.667 0.00 0.00 0.00 2.59
1781 1821 4.883083 ACAAATCGAGCTGACAAGAGTAA 58.117 39.130 0.00 0.00 0.00 2.24
1782 1822 5.297547 ACAAATCGAGCTGACAAGAGTAAA 58.702 37.500 0.00 0.00 0.00 2.01
1783 1823 5.758296 ACAAATCGAGCTGACAAGAGTAAAA 59.242 36.000 0.00 0.00 0.00 1.52
1796 1836 9.314321 TGACAAGAGTAAAAAGTTTGAGAGTAG 57.686 33.333 0.00 0.00 0.00 2.57
1797 1837 8.664211 ACAAGAGTAAAAAGTTTGAGAGTAGG 57.336 34.615 0.00 0.00 0.00 3.18
1811 1851 4.528206 TGAGAGTAGGAACTGAGAATGCAA 59.472 41.667 0.00 0.00 41.52 4.08
1826 1866 8.263940 TGAGAATGCAACAGGTACTATAAAAC 57.736 34.615 0.00 0.00 36.02 2.43
1847 1888 4.332828 ACCTGTTAGAACCACCAATAAGC 58.667 43.478 0.00 0.00 0.00 3.09
1849 1890 4.250464 CTGTTAGAACCACCAATAAGCGA 58.750 43.478 0.00 0.00 0.00 4.93
1862 1903 7.117523 CCACCAATAAGCGATTTCAAATTTCAA 59.882 33.333 0.00 0.00 0.00 2.69
1872 1913 7.306399 GCGATTTCAAATTTCAATGGAGCATAG 60.306 37.037 6.04 0.00 0.00 2.23
1873 1914 7.168637 CGATTTCAAATTTCAATGGAGCATAGG 59.831 37.037 0.00 0.00 0.00 2.57
1885 1930 2.559785 GCATAGGTTGTGCTGTGCT 58.440 52.632 0.00 0.00 39.45 4.40
1898 1943 1.265365 GCTGTGCTGACTTTGGAACTC 59.735 52.381 0.00 0.00 0.00 3.01
1900 1945 0.868406 GTGCTGACTTTGGAACTCGG 59.132 55.000 0.00 0.00 0.00 4.63
1909 1954 0.320374 TTGGAACTCGGTAGCACCTG 59.680 55.000 4.21 0.59 35.66 4.00
1910 1955 0.541063 TGGAACTCGGTAGCACCTGA 60.541 55.000 4.21 3.04 35.66 3.86
1911 1956 0.108756 GGAACTCGGTAGCACCTGAC 60.109 60.000 4.21 0.00 35.66 3.51
1912 1957 0.456312 GAACTCGGTAGCACCTGACG 60.456 60.000 4.21 0.00 35.66 4.35
1913 1958 0.892358 AACTCGGTAGCACCTGACGA 60.892 55.000 0.00 0.00 35.66 4.20
1914 1959 0.892358 ACTCGGTAGCACCTGACGAA 60.892 55.000 0.00 0.00 35.66 3.85
1915 1960 0.456221 CTCGGTAGCACCTGACGAAT 59.544 55.000 0.00 0.00 35.66 3.34
1916 1961 0.454600 TCGGTAGCACCTGACGAATC 59.545 55.000 0.00 0.00 35.66 2.52
1917 1962 0.456221 CGGTAGCACCTGACGAATCT 59.544 55.000 0.00 0.00 35.66 2.40
1918 1963 1.674441 CGGTAGCACCTGACGAATCTA 59.326 52.381 0.00 0.00 35.66 1.98
1919 1964 2.541178 CGGTAGCACCTGACGAATCTAC 60.541 54.545 0.00 0.00 35.66 2.59
1920 1965 2.688958 GGTAGCACCTGACGAATCTACT 59.311 50.000 0.00 0.00 34.73 2.57
1921 1966 3.130693 GGTAGCACCTGACGAATCTACTT 59.869 47.826 0.00 0.00 34.73 2.24
1922 1967 4.337555 GGTAGCACCTGACGAATCTACTTA 59.662 45.833 0.00 0.00 34.73 2.24
1923 1968 5.009811 GGTAGCACCTGACGAATCTACTTAT 59.990 44.000 0.00 0.00 34.73 1.73
1924 1969 5.599999 AGCACCTGACGAATCTACTTATT 57.400 39.130 0.00 0.00 0.00 1.40
1925 1970 5.978814 AGCACCTGACGAATCTACTTATTT 58.021 37.500 0.00 0.00 0.00 1.40
1926 1971 5.812642 AGCACCTGACGAATCTACTTATTTG 59.187 40.000 0.00 0.00 0.00 2.32
1927 1972 5.810587 GCACCTGACGAATCTACTTATTTGA 59.189 40.000 0.00 0.00 0.00 2.69
1928 1973 6.480320 GCACCTGACGAATCTACTTATTTGAT 59.520 38.462 0.00 0.00 0.00 2.57
1929 1974 7.652105 GCACCTGACGAATCTACTTATTTGATA 59.348 37.037 0.00 0.00 0.00 2.15
1930 1975 9.186323 CACCTGACGAATCTACTTATTTGATAG 57.814 37.037 0.00 0.00 0.00 2.08
1931 1976 8.915036 ACCTGACGAATCTACTTATTTGATAGT 58.085 33.333 0.00 0.00 0.00 2.12
1955 2000 9.220767 AGTACATTCTTTCTGAAAATGTAGGAC 57.779 33.333 20.09 14.54 43.06 3.85
1963 2008 7.946655 TTCTGAAAATGTAGGACGCATATAG 57.053 36.000 0.00 0.00 0.00 1.31
1964 2009 6.455647 TCTGAAAATGTAGGACGCATATAGG 58.544 40.000 0.00 0.00 0.00 2.57
1966 2011 7.004555 TGAAAATGTAGGACGCATATAGGAT 57.995 36.000 0.00 0.00 0.00 3.24
1967 2012 7.450074 TGAAAATGTAGGACGCATATAGGATT 58.550 34.615 0.00 0.00 0.00 3.01
1968 2013 7.936847 TGAAAATGTAGGACGCATATAGGATTT 59.063 33.333 0.00 0.00 0.00 2.17
1969 2014 9.431887 GAAAATGTAGGACGCATATAGGATTTA 57.568 33.333 0.00 0.00 0.00 1.40
1970 2015 9.959721 AAAATGTAGGACGCATATAGGATTTAT 57.040 29.630 0.00 0.00 0.00 1.40
1971 2016 8.948631 AATGTAGGACGCATATAGGATTTATG 57.051 34.615 0.00 0.00 0.00 1.90
1972 2017 6.338146 TGTAGGACGCATATAGGATTTATGC 58.662 40.000 5.76 5.76 45.42 3.14
1983 2028 2.439507 AGGATTTATGCGAGTGATGGGT 59.560 45.455 0.00 0.00 0.00 4.51
1992 2037 2.905075 CGAGTGATGGGTTGATGCTAA 58.095 47.619 0.00 0.00 0.00 3.09
1993 2038 3.470709 CGAGTGATGGGTTGATGCTAAT 58.529 45.455 0.00 0.00 0.00 1.73
1994 2039 3.249320 CGAGTGATGGGTTGATGCTAATG 59.751 47.826 0.00 0.00 0.00 1.90
1995 2040 2.954318 AGTGATGGGTTGATGCTAATGC 59.046 45.455 0.00 0.00 40.20 3.56
1996 2041 2.954318 GTGATGGGTTGATGCTAATGCT 59.046 45.455 0.00 0.00 40.48 3.79
1998 2043 4.580167 GTGATGGGTTGATGCTAATGCTAA 59.420 41.667 0.00 0.00 40.48 3.09
1999 2044 5.067674 GTGATGGGTTGATGCTAATGCTAAA 59.932 40.000 0.00 0.00 40.48 1.85
2000 2045 5.834742 TGATGGGTTGATGCTAATGCTAAAT 59.165 36.000 0.00 0.00 40.48 1.40
2001 2046 5.518848 TGGGTTGATGCTAATGCTAAATG 57.481 39.130 0.00 0.00 40.48 2.32
2002 2047 4.202141 TGGGTTGATGCTAATGCTAAATGC 60.202 41.667 0.00 0.00 40.48 3.56
2291 2336 2.105128 GTGGAGCATCGTCGGGAG 59.895 66.667 0.00 0.00 34.37 4.30
2310 2355 2.099427 GAGAGTGAAGTGGTACGGGATC 59.901 54.545 0.00 0.00 0.00 3.36
2316 2361 0.750911 AGTGGTACGGGATCGGAGTC 60.751 60.000 0.00 0.00 41.39 3.36
2328 2373 3.058777 GGATCGGAGTCGTTCTCATCTAC 60.059 52.174 11.08 0.00 44.40 2.59
2340 2385 1.065928 CATCTACGCGGTCACCCTC 59.934 63.158 12.47 0.00 0.00 4.30
2349 2394 1.270358 GCGGTCACCCTCTCCATATTC 60.270 57.143 0.00 0.00 0.00 1.75
2487 2532 2.237143 CCTCCTGCAGAACTCCAATGTA 59.763 50.000 17.39 0.00 0.00 2.29
2572 2617 2.886124 GCTACTTCCGCACCGAGC 60.886 66.667 0.00 0.00 40.87 5.03
2682 2727 3.680786 CACCACTCCGAGACCGCA 61.681 66.667 1.33 0.00 0.00 5.69
2765 2810 2.061509 TGGGTCATCTGAATGCATGG 57.938 50.000 0.00 0.00 32.58 3.66
2766 2811 1.325355 GGGTCATCTGAATGCATGGG 58.675 55.000 0.00 0.00 32.58 4.00
2767 2812 1.325355 GGTCATCTGAATGCATGGGG 58.675 55.000 0.00 0.00 32.58 4.96
2768 2813 1.325355 GTCATCTGAATGCATGGGGG 58.675 55.000 0.00 0.00 32.58 5.40
2769 2814 0.468585 TCATCTGAATGCATGGGGGC 60.469 55.000 0.00 0.00 32.58 5.80
2843 2897 1.917273 CTGATGCTTCATTTTGCCCG 58.083 50.000 2.33 0.00 0.00 6.13
3031 3224 3.118445 CCCTCTTCTTCCTCTTCCATGTC 60.118 52.174 0.00 0.00 0.00 3.06
3072 3265 1.607467 GCCCAGCATTGGTTCAGGT 60.607 57.895 0.00 0.00 43.40 4.00
3087 3280 2.575532 TCAGGTGCAAAAGTTCAGAGG 58.424 47.619 0.00 0.00 0.00 3.69
3360 3570 2.885894 CTCAGTTATACTCCCTCCGTCC 59.114 54.545 0.00 0.00 0.00 4.79
3363 3573 2.179424 AGTTATACTCCCTCCGTCCCAT 59.821 50.000 0.00 0.00 0.00 4.00
3368 3578 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3369 3579 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3370 3580 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3372 3582 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3373 3583 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3374 3584 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3375 3585 5.247564 CCCTCCGTCCCATAATATAAGAACA 59.752 44.000 0.00 0.00 0.00 3.18
3376 3586 6.070194 CCCTCCGTCCCATAATATAAGAACAT 60.070 42.308 0.00 0.00 0.00 2.71
3377 3587 7.394816 CCTCCGTCCCATAATATAAGAACATT 58.605 38.462 0.00 0.00 0.00 2.71
3378 3588 7.883311 CCTCCGTCCCATAATATAAGAACATTT 59.117 37.037 0.00 0.00 0.00 2.32
3381 3591 9.677567 CCGTCCCATAATATAAGAACATTTTTG 57.322 33.333 0.00 0.00 0.00 2.44
3396 3606 9.998106 AGAACATTTTTGATACTACACTAGTGT 57.002 29.630 30.13 30.13 46.87 3.55
3405 3615 7.864307 GATACTACACTAGTGTCAAAAACGT 57.136 36.000 31.11 18.06 43.73 3.99
3409 3619 6.815142 ACTACACTAGTGTCAAAAACGTTCTT 59.185 34.615 31.11 4.99 43.74 2.52
3411 3621 7.781548 ACACTAGTGTCAAAAACGTTCTTAT 57.218 32.000 22.95 0.00 40.24 1.73
3413 3623 9.485206 ACACTAGTGTCAAAAACGTTCTTATAT 57.515 29.630 22.95 0.00 40.24 0.86
3419 3629 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
3420 3630 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
3421 3631 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
3458 3668 6.919721 TGATAGCAACAGGTAAACCAATTTC 58.080 36.000 1.26 0.00 38.89 2.17
3459 3669 4.237349 AGCAACAGGTAAACCAATTTCG 57.763 40.909 1.26 0.00 38.89 3.46
3481 3691 5.650266 TCGTGGTATTATGGTTGCATTTCTT 59.350 36.000 0.00 0.00 0.00 2.52
3505 3715 3.056107 ACTTATGTCTCTTACAAGGCGCA 60.056 43.478 10.83 0.00 42.70 6.09
3531 3745 5.163963 GGCCTTTTCGCATATTTTGTTGAAG 60.164 40.000 0.00 0.00 0.00 3.02
3547 3761 5.072055 TGTTGAAGCCTGAAAGATCATCAA 58.928 37.500 0.00 0.00 34.07 2.57
3566 3780 6.925718 TCATCAAGTAGAGCATATCTTTTCGG 59.074 38.462 0.00 0.00 39.64 4.30
3579 3793 1.448922 TTTTCGGCGGAAACCACAGG 61.449 55.000 17.97 0.00 41.66 4.00
3584 3798 2.742372 CGGAAACCACAGGCCTCG 60.742 66.667 0.00 0.52 0.00 4.63
3587 3801 2.594592 AAACCACAGGCCTCGTGC 60.595 61.111 22.61 0.00 40.16 5.34
3608 3822 7.224753 TCGTGCCTAGATGATAATTGAAAGAAC 59.775 37.037 0.00 0.00 0.00 3.01
3631 3845 7.816945 ACTGATAAATTTCAATCTTTTGCCG 57.183 32.000 0.00 0.00 32.61 5.69
3639 3853 8.687824 AATTTCAATCTTTTGCCGTATAACAG 57.312 30.769 0.00 0.00 32.61 3.16
3644 3858 3.189702 TCTTTTGCCGTATAACAGTTGGC 59.810 43.478 5.57 5.57 45.91 4.52
3678 3893 6.360329 CAAATTGCAATGTTCTTTGAAGCTC 58.640 36.000 13.82 0.00 0.00 4.09
3710 3925 5.649395 TGTCAGGATTTATTTGAAGCTCTGG 59.351 40.000 0.00 0.00 0.00 3.86
3724 3945 0.108472 CTCTGGCAGTCGAGCATCAA 60.108 55.000 15.27 0.00 35.83 2.57
3794 4016 1.746322 TAGTGGAACGTTGCCGACCA 61.746 55.000 17.64 9.44 45.86 4.02
3795 4017 2.589442 TGGAACGTTGCCGACCAC 60.589 61.111 17.64 0.00 38.37 4.16
3804 4026 0.250945 TTGCCGACCACCTATGCAAA 60.251 50.000 0.00 0.00 38.83 3.68
3805 4027 0.250945 TGCCGACCACCTATGCAAAA 60.251 50.000 0.00 0.00 0.00 2.44
3806 4028 0.451783 GCCGACCACCTATGCAAAAG 59.548 55.000 0.00 0.00 0.00 2.27
3807 4029 0.451783 CCGACCACCTATGCAAAAGC 59.548 55.000 0.00 0.00 0.00 3.51
3808 4030 0.096976 CGACCACCTATGCAAAAGCG 59.903 55.000 0.00 0.00 0.00 4.68
3810 4032 1.398390 GACCACCTATGCAAAAGCGAG 59.602 52.381 0.00 0.00 0.00 5.03
3811 4033 0.099436 CCACCTATGCAAAAGCGAGC 59.901 55.000 0.00 0.00 0.00 5.03
3812 4034 0.247814 CACCTATGCAAAAGCGAGCG 60.248 55.000 0.00 0.00 0.00 5.03
3814 4036 1.286501 CCTATGCAAAAGCGAGCGTA 58.713 50.000 0.00 0.00 0.00 4.42
3815 4037 1.004927 CCTATGCAAAAGCGAGCGTAC 60.005 52.381 0.00 0.00 0.00 3.67
3817 4039 0.165944 ATGCAAAAGCGAGCGTACAC 59.834 50.000 0.00 0.00 0.00 2.90
3818 4040 1.154814 TGCAAAAGCGAGCGTACACA 61.155 50.000 0.00 0.00 0.00 3.72
3819 4041 0.721483 GCAAAAGCGAGCGTACACAC 60.721 55.000 0.00 0.00 0.00 3.82
3820 4042 0.579630 CAAAAGCGAGCGTACACACA 59.420 50.000 0.00 0.00 0.00 3.72
3821 4043 0.580104 AAAAGCGAGCGTACACACAC 59.420 50.000 0.00 0.00 0.00 3.82
3822 4044 1.545614 AAAGCGAGCGTACACACACG 61.546 55.000 0.00 0.00 44.71 4.49
3823 4045 2.396747 AAGCGAGCGTACACACACGA 62.397 55.000 0.00 0.00 44.69 4.35
3824 4046 2.426183 GCGAGCGTACACACACGAG 61.426 63.158 0.00 0.00 44.69 4.18
3825 4047 1.082300 CGAGCGTACACACACGAGT 60.082 57.895 0.00 0.00 44.69 4.18
3826 4048 0.164432 CGAGCGTACACACACGAGTA 59.836 55.000 0.00 0.00 44.69 2.59
3829 4051 1.047739 GCGTACACACACGAGTACAC 58.952 55.000 0.00 0.00 44.69 2.90
3830 4052 1.334419 GCGTACACACACGAGTACACT 60.334 52.381 0.00 0.00 44.69 3.55
3831 4053 2.568100 CGTACACACACGAGTACACTC 58.432 52.381 0.00 0.00 44.69 3.51
3832 4054 2.222678 CGTACACACACGAGTACACTCT 59.777 50.000 7.72 0.00 44.69 3.24
3833 4055 3.303593 CGTACACACACGAGTACACTCTT 60.304 47.826 7.72 0.00 44.69 2.85
3834 4056 3.795623 ACACACACGAGTACACTCTTT 57.204 42.857 7.72 0.00 40.75 2.52
3835 4057 3.703420 ACACACACGAGTACACTCTTTC 58.297 45.455 7.72 0.00 40.75 2.62
3836 4058 3.380637 ACACACACGAGTACACTCTTTCT 59.619 43.478 7.72 0.00 40.75 2.52
3840 4062 4.677378 CACACGAGTACACTCTTTCTTCTG 59.323 45.833 7.72 0.00 40.75 3.02
3842 4064 4.912766 CACGAGTACACTCTTTCTTCTGTC 59.087 45.833 7.72 0.00 40.75 3.51
3843 4065 4.152526 CGAGTACACTCTTTCTTCTGTCG 58.847 47.826 7.72 0.00 40.75 4.35
3844 4066 4.083961 CGAGTACACTCTTTCTTCTGTCGA 60.084 45.833 7.72 0.00 40.75 4.20
3845 4067 5.391097 CGAGTACACTCTTTCTTCTGTCGAT 60.391 44.000 7.72 0.00 40.75 3.59
3846 4068 6.183360 CGAGTACACTCTTTCTTCTGTCGATA 60.183 42.308 7.72 0.00 40.75 2.92
3847 4069 7.450124 AGTACACTCTTTCTTCTGTCGATAA 57.550 36.000 0.00 0.00 0.00 1.75
3848 4070 7.306953 AGTACACTCTTTCTTCTGTCGATAAC 58.693 38.462 0.00 0.00 0.00 1.89
3849 4071 5.471257 ACACTCTTTCTTCTGTCGATAACC 58.529 41.667 0.00 0.00 0.00 2.85
3850 4072 4.559251 CACTCTTTCTTCTGTCGATAACCG 59.441 45.833 0.00 0.00 40.25 4.44
3851 4073 4.217983 ACTCTTTCTTCTGTCGATAACCGT 59.782 41.667 0.00 0.00 39.75 4.83
3852 4074 5.130292 TCTTTCTTCTGTCGATAACCGTT 57.870 39.130 0.00 0.00 39.75 4.44
3853 4075 5.535333 TCTTTCTTCTGTCGATAACCGTTT 58.465 37.500 0.00 0.00 39.75 3.60
3854 4076 5.987347 TCTTTCTTCTGTCGATAACCGTTTT 59.013 36.000 0.00 0.00 39.75 2.43
3855 4077 5.834239 TTCTTCTGTCGATAACCGTTTTC 57.166 39.130 0.00 0.00 39.75 2.29
3856 4078 5.130292 TCTTCTGTCGATAACCGTTTTCT 57.870 39.130 0.00 0.00 39.75 2.52
3857 4079 5.159209 TCTTCTGTCGATAACCGTTTTCTC 58.841 41.667 0.00 0.00 39.75 2.87
3858 4080 4.508461 TCTGTCGATAACCGTTTTCTCA 57.492 40.909 0.00 0.00 39.75 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 8.379902 GGTTTGTGTCAACAAGAAAGTTATTTG 58.620 33.333 0.00 0.00 46.66 2.32
199 200 9.397280 GAGGAGCTAAAGGTAGAACAAATATTT 57.603 33.333 0.00 0.00 0.00 1.40
402 408 1.414181 ACGAGATCCGAGCAAATCCAT 59.586 47.619 10.05 0.00 41.76 3.41
436 442 3.054166 CCAACTCGAATACACACGAACA 58.946 45.455 0.00 0.00 38.05 3.18
492 498 2.546494 GCGCACCAGAACAGCAACT 61.546 57.895 0.30 0.00 0.00 3.16
519 525 0.872021 GTCGTCATGCTAAGGCCTCG 60.872 60.000 5.23 2.04 37.74 4.63
532 538 0.536687 AGACAGTCGGGAAGTCGTCA 60.537 55.000 0.00 0.00 37.36 4.35
576 582 3.606662 ATCGTCCCTCCATCGCCG 61.607 66.667 0.00 0.00 0.00 6.46
577 583 2.029666 CATCGTCCCTCCATCGCC 59.970 66.667 0.00 0.00 0.00 5.54
578 584 1.300233 GTCATCGTCCCTCCATCGC 60.300 63.158 0.00 0.00 0.00 4.58
579 585 1.008424 CGTCATCGTCCCTCCATCG 60.008 63.158 0.00 0.00 0.00 3.84
580 586 1.364171 CCGTCATCGTCCCTCCATC 59.636 63.158 0.00 0.00 35.01 3.51
581 587 2.797278 GCCGTCATCGTCCCTCCAT 61.797 63.158 0.00 0.00 35.01 3.41
582 588 3.458163 GCCGTCATCGTCCCTCCA 61.458 66.667 0.00 0.00 35.01 3.86
583 589 4.570663 CGCCGTCATCGTCCCTCC 62.571 72.222 0.00 0.00 35.01 4.30
584 590 4.570663 CCGCCGTCATCGTCCCTC 62.571 72.222 0.00 0.00 35.01 4.30
607 613 2.734673 GCACTGAAGCGAGCCGAAG 61.735 63.158 0.00 0.00 0.00 3.79
608 614 2.715532 AAGCACTGAAGCGAGCCGAA 62.716 55.000 0.00 0.00 40.15 4.30
609 615 3.226429 AAGCACTGAAGCGAGCCGA 62.226 57.895 0.00 0.00 40.15 5.54
610 616 2.740055 AAGCACTGAAGCGAGCCG 60.740 61.111 0.00 0.00 40.15 5.52
611 617 0.670546 TACAAGCACTGAAGCGAGCC 60.671 55.000 0.00 0.00 40.15 4.70
612 618 0.718343 CTACAAGCACTGAAGCGAGC 59.282 55.000 0.00 0.00 40.15 5.03
613 619 1.989165 GACTACAAGCACTGAAGCGAG 59.011 52.381 0.00 0.00 40.15 5.03
614 620 1.666023 CGACTACAAGCACTGAAGCGA 60.666 52.381 0.00 0.00 40.15 4.93
615 621 0.710567 CGACTACAAGCACTGAAGCG 59.289 55.000 0.00 0.00 40.15 4.68
616 622 1.721926 GACGACTACAAGCACTGAAGC 59.278 52.381 0.00 0.00 0.00 3.86
617 623 1.979469 CGACGACTACAAGCACTGAAG 59.021 52.381 0.00 0.00 0.00 3.02
618 624 1.929038 GCGACGACTACAAGCACTGAA 60.929 52.381 0.00 0.00 0.00 3.02
619 625 0.386858 GCGACGACTACAAGCACTGA 60.387 55.000 0.00 0.00 0.00 3.41
620 626 0.387367 AGCGACGACTACAAGCACTG 60.387 55.000 0.00 0.00 0.00 3.66
621 627 1.130749 CTAGCGACGACTACAAGCACT 59.869 52.381 0.00 0.00 0.00 4.40
622 628 1.536149 CTAGCGACGACTACAAGCAC 58.464 55.000 0.00 0.00 0.00 4.40
623 629 0.450583 CCTAGCGACGACTACAAGCA 59.549 55.000 0.00 0.00 0.00 3.91
624 630 0.450983 ACCTAGCGACGACTACAAGC 59.549 55.000 0.00 0.00 0.00 4.01
625 631 1.202154 CCACCTAGCGACGACTACAAG 60.202 57.143 0.00 0.00 0.00 3.16
626 632 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
627 633 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
628 634 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
629 635 0.745845 GGACCACCTAGCGACGACTA 60.746 60.000 0.00 0.00 0.00 2.59
630 636 2.045131 GGACCACCTAGCGACGACT 61.045 63.158 0.00 0.00 0.00 4.18
631 637 2.338015 TGGACCACCTAGCGACGAC 61.338 63.158 0.00 0.00 37.04 4.34
632 638 2.034532 TGGACCACCTAGCGACGA 59.965 61.111 0.00 0.00 37.04 4.20
633 639 2.181021 GTGGACCACCTAGCGACG 59.819 66.667 14.16 0.00 37.04 5.12
634 640 2.181021 CGTGGACCACCTAGCGAC 59.819 66.667 19.11 0.00 37.04 5.19
635 641 2.849096 ATCCGTGGACCACCTAGCGA 62.849 60.000 19.11 7.18 37.04 4.93
636 642 2.351336 GATCCGTGGACCACCTAGCG 62.351 65.000 19.11 6.75 37.04 4.26
637 643 1.043673 AGATCCGTGGACCACCTAGC 61.044 60.000 19.11 9.79 37.04 3.42
638 644 2.158652 TCTAGATCCGTGGACCACCTAG 60.159 54.545 19.11 20.31 37.04 3.02
639 645 1.848388 TCTAGATCCGTGGACCACCTA 59.152 52.381 19.11 12.59 37.04 3.08
640 646 0.629596 TCTAGATCCGTGGACCACCT 59.370 55.000 19.11 12.11 37.04 4.00
641 647 1.341531 CATCTAGATCCGTGGACCACC 59.658 57.143 19.11 4.77 0.00 4.61
642 648 2.032620 ACATCTAGATCCGTGGACCAC 58.967 52.381 15.13 15.13 0.00 4.16
643 649 2.454336 ACATCTAGATCCGTGGACCA 57.546 50.000 1.03 0.00 0.00 4.02
644 650 5.470047 AATTACATCTAGATCCGTGGACC 57.530 43.478 1.03 0.00 0.00 4.46
645 651 7.787725 AAAAATTACATCTAGATCCGTGGAC 57.212 36.000 1.03 0.00 0.00 4.02
668 674 9.537192 CAGTACAACGAATACCAGGAATAATAA 57.463 33.333 0.00 0.00 0.00 1.40
669 675 7.654520 GCAGTACAACGAATACCAGGAATAATA 59.345 37.037 0.00 0.00 0.00 0.98
670 676 6.482308 GCAGTACAACGAATACCAGGAATAAT 59.518 38.462 0.00 0.00 0.00 1.28
671 677 5.813672 GCAGTACAACGAATACCAGGAATAA 59.186 40.000 0.00 0.00 0.00 1.40
672 678 5.353938 GCAGTACAACGAATACCAGGAATA 58.646 41.667 0.00 0.00 0.00 1.75
673 679 4.189231 GCAGTACAACGAATACCAGGAAT 58.811 43.478 0.00 0.00 0.00 3.01
674 680 3.592059 GCAGTACAACGAATACCAGGAA 58.408 45.455 0.00 0.00 0.00 3.36
675 681 2.093869 GGCAGTACAACGAATACCAGGA 60.094 50.000 0.00 0.00 0.00 3.86
676 682 2.277084 GGCAGTACAACGAATACCAGG 58.723 52.381 0.00 0.00 0.00 4.45
677 683 2.967362 TGGCAGTACAACGAATACCAG 58.033 47.619 0.00 0.00 0.00 4.00
678 684 3.055747 TCATGGCAGTACAACGAATACCA 60.056 43.478 0.00 0.00 0.00 3.25
679 685 3.308866 GTCATGGCAGTACAACGAATACC 59.691 47.826 0.00 0.00 0.00 2.73
680 686 4.032900 CAGTCATGGCAGTACAACGAATAC 59.967 45.833 0.00 0.00 0.00 1.89
681 687 4.081917 TCAGTCATGGCAGTACAACGAATA 60.082 41.667 0.00 0.00 0.00 1.75
682 688 3.002791 CAGTCATGGCAGTACAACGAAT 58.997 45.455 0.00 0.00 0.00 3.34
683 689 2.036604 TCAGTCATGGCAGTACAACGAA 59.963 45.455 0.00 0.00 0.00 3.85
684 690 1.616374 TCAGTCATGGCAGTACAACGA 59.384 47.619 0.00 0.00 0.00 3.85
685 691 2.078849 TCAGTCATGGCAGTACAACG 57.921 50.000 0.00 0.00 0.00 4.10
686 692 4.829064 TTTTCAGTCATGGCAGTACAAC 57.171 40.909 0.00 0.00 0.00 3.32
687 693 5.069318 TCATTTTCAGTCATGGCAGTACAA 58.931 37.500 0.00 0.00 0.00 2.41
688 694 4.650734 TCATTTTCAGTCATGGCAGTACA 58.349 39.130 0.00 0.00 0.00 2.90
689 695 5.627499 TTCATTTTCAGTCATGGCAGTAC 57.373 39.130 0.00 0.00 0.00 2.73
690 696 7.337938 TCTATTCATTTTCAGTCATGGCAGTA 58.662 34.615 0.00 0.00 0.00 2.74
691 697 6.182627 TCTATTCATTTTCAGTCATGGCAGT 58.817 36.000 0.00 0.00 0.00 4.40
692 698 6.688637 TCTATTCATTTTCAGTCATGGCAG 57.311 37.500 0.00 0.00 0.00 4.85
693 699 6.017687 CGATCTATTCATTTTCAGTCATGGCA 60.018 38.462 0.00 0.00 0.00 4.92
694 700 6.369005 CGATCTATTCATTTTCAGTCATGGC 58.631 40.000 0.00 0.00 0.00 4.40
695 701 6.707608 TCCGATCTATTCATTTTCAGTCATGG 59.292 38.462 0.00 0.00 0.00 3.66
696 702 7.719778 TCCGATCTATTCATTTTCAGTCATG 57.280 36.000 0.00 0.00 0.00 3.07
697 703 8.737168 TTTCCGATCTATTCATTTTCAGTCAT 57.263 30.769 0.00 0.00 0.00 3.06
698 704 8.737168 ATTTCCGATCTATTCATTTTCAGTCA 57.263 30.769 0.00 0.00 0.00 3.41
736 742 9.680315 CGTATCTCTCTCTCGGTAAAATAATTT 57.320 33.333 0.00 0.00 0.00 1.82
737 743 7.808856 GCGTATCTCTCTCTCGGTAAAATAATT 59.191 37.037 0.00 0.00 0.00 1.40
738 744 7.175293 AGCGTATCTCTCTCTCGGTAAAATAAT 59.825 37.037 0.00 0.00 0.00 1.28
739 745 6.485984 AGCGTATCTCTCTCTCGGTAAAATAA 59.514 38.462 0.00 0.00 0.00 1.40
740 746 5.996513 AGCGTATCTCTCTCTCGGTAAAATA 59.003 40.000 0.00 0.00 0.00 1.40
741 747 4.822896 AGCGTATCTCTCTCTCGGTAAAAT 59.177 41.667 0.00 0.00 0.00 1.82
742 748 4.035324 CAGCGTATCTCTCTCTCGGTAAAA 59.965 45.833 0.00 0.00 0.00 1.52
743 749 3.560481 CAGCGTATCTCTCTCTCGGTAAA 59.440 47.826 0.00 0.00 0.00 2.01
744 750 3.132160 CAGCGTATCTCTCTCTCGGTAA 58.868 50.000 0.00 0.00 0.00 2.85
745 751 2.102757 ACAGCGTATCTCTCTCTCGGTA 59.897 50.000 0.00 0.00 0.00 4.02
746 752 1.134340 ACAGCGTATCTCTCTCTCGGT 60.134 52.381 0.00 0.00 0.00 4.69
747 753 1.588674 ACAGCGTATCTCTCTCTCGG 58.411 55.000 0.00 0.00 0.00 4.63
748 754 2.032377 GGAACAGCGTATCTCTCTCTCG 60.032 54.545 0.00 0.00 0.00 4.04
749 755 2.032377 CGGAACAGCGTATCTCTCTCTC 60.032 54.545 0.00 0.00 0.00 3.20
750 756 1.944024 CGGAACAGCGTATCTCTCTCT 59.056 52.381 0.00 0.00 0.00 3.10
751 757 1.598430 GCGGAACAGCGTATCTCTCTC 60.598 57.143 0.00 0.00 0.00 3.20
759 765 2.992689 TCCCTGCGGAACAGCGTA 60.993 61.111 0.00 0.00 45.78 4.42
761 767 4.069232 TCTCCCTGCGGAACAGCG 62.069 66.667 0.00 0.00 45.78 5.18
762 768 2.435059 GTCTCCCTGCGGAACAGC 60.435 66.667 0.00 0.00 45.78 4.40
789 795 4.632538 ATGCGCCTACCTTTCAAATAAC 57.367 40.909 4.18 0.00 0.00 1.89
796 802 5.758784 AGACTAAAATATGCGCCTACCTTTC 59.241 40.000 4.18 0.00 0.00 2.62
802 808 6.590292 GCTATGAAGACTAAAATATGCGCCTA 59.410 38.462 4.18 0.00 0.00 3.93
819 825 2.706555 TCACGCTATCGGCTATGAAG 57.293 50.000 0.00 0.00 40.69 3.02
846 852 0.300789 GTCTTCGCTTTATTCGCCCG 59.699 55.000 0.00 0.00 0.00 6.13
860 866 7.095899 GGTGATTCTTTGCTTGATTTTGTCTTC 60.096 37.037 0.00 0.00 0.00 2.87
990 1002 1.388065 TTTGTGGGCTTTCGTGTGGG 61.388 55.000 0.00 0.00 0.00 4.61
1050 1066 1.229529 ACTTGGGGGATCTGGACGT 60.230 57.895 0.00 0.00 0.00 4.34
1645 1663 3.067833 GTGCCAAGAGAAACAGAGGTAC 58.932 50.000 0.00 0.00 0.00 3.34
1657 1684 1.597937 GCAGAACAAACGTGCCAAGAG 60.598 52.381 0.00 0.00 0.00 2.85
1658 1685 0.380378 GCAGAACAAACGTGCCAAGA 59.620 50.000 0.00 0.00 0.00 3.02
1659 1686 2.872028 GCAGAACAAACGTGCCAAG 58.128 52.632 0.00 0.00 0.00 3.61
1664 1691 0.307760 GACTGGGCAGAACAAACGTG 59.692 55.000 0.00 0.00 0.00 4.49
1665 1692 1.157870 CGACTGGGCAGAACAAACGT 61.158 55.000 0.00 0.00 0.00 3.99
1666 1693 1.157870 ACGACTGGGCAGAACAAACG 61.158 55.000 0.00 0.00 0.00 3.60
1667 1694 0.307760 CACGACTGGGCAGAACAAAC 59.692 55.000 0.00 0.00 0.00 2.93
1668 1695 0.107410 ACACGACTGGGCAGAACAAA 60.107 50.000 0.00 0.00 0.00 2.83
1671 1698 0.249911 AGAACACGACTGGGCAGAAC 60.250 55.000 0.00 0.00 0.00 3.01
1672 1699 0.249868 CAGAACACGACTGGGCAGAA 60.250 55.000 0.00 0.00 0.00 3.02
1674 1701 0.532862 AACAGAACACGACTGGGCAG 60.533 55.000 0.00 0.00 39.38 4.85
1676 1703 0.249911 AGAACAGAACACGACTGGGC 60.250 55.000 0.00 0.00 39.38 5.36
1677 1704 2.135933 GAAGAACAGAACACGACTGGG 58.864 52.381 0.00 0.00 39.38 4.45
1678 1705 3.053455 GAGAAGAACAGAACACGACTGG 58.947 50.000 0.00 0.00 39.38 4.00
1680 1707 3.632604 TCAGAGAAGAACAGAACACGACT 59.367 43.478 0.00 0.00 0.00 4.18
1681 1708 3.966154 TCAGAGAAGAACAGAACACGAC 58.034 45.455 0.00 0.00 0.00 4.34
1683 1710 5.914085 AATTCAGAGAAGAACAGAACACG 57.086 39.130 0.00 0.00 0.00 4.49
1684 1711 7.748241 GCAATAATTCAGAGAAGAACAGAACAC 59.252 37.037 0.00 0.00 0.00 3.32
1685 1712 7.094634 GGCAATAATTCAGAGAAGAACAGAACA 60.095 37.037 0.00 0.00 0.00 3.18
1689 1716 5.067023 GGGGCAATAATTCAGAGAAGAACAG 59.933 44.000 0.00 0.00 0.00 3.16
1690 1717 4.949856 GGGGCAATAATTCAGAGAAGAACA 59.050 41.667 0.00 0.00 0.00 3.18
1691 1718 5.196695 AGGGGCAATAATTCAGAGAAGAAC 58.803 41.667 0.00 0.00 0.00 3.01
1694 1721 6.179906 TCTAGGGGCAATAATTCAGAGAAG 57.820 41.667 0.00 0.00 0.00 2.85
1695 1722 6.575244 TTCTAGGGGCAATAATTCAGAGAA 57.425 37.500 0.00 0.00 0.00 2.87
1706 1733 2.025887 CAGACCAGTTTCTAGGGGCAAT 60.026 50.000 0.00 0.00 29.65 3.56
1707 1734 1.351017 CAGACCAGTTTCTAGGGGCAA 59.649 52.381 0.00 0.00 29.65 4.52
1708 1735 0.984230 CAGACCAGTTTCTAGGGGCA 59.016 55.000 0.00 0.00 29.65 5.36
1709 1736 0.253327 CCAGACCAGTTTCTAGGGGC 59.747 60.000 0.00 0.00 0.00 5.80
1711 1738 0.253327 GCCCAGACCAGTTTCTAGGG 59.747 60.000 0.00 0.00 37.18 3.53
1712 1739 0.108138 CGCCCAGACCAGTTTCTAGG 60.108 60.000 0.00 0.00 0.00 3.02
1725 1754 1.128692 GATTTCTGAACGAACGCCCAG 59.871 52.381 0.00 9.09 0.00 4.45
1729 1758 1.464189 GGCTGATTTCTGAACGAACGC 60.464 52.381 0.00 0.00 0.00 4.84
1730 1759 1.798223 TGGCTGATTTCTGAACGAACG 59.202 47.619 0.00 0.00 0.00 3.95
1734 1763 1.466167 CTGGTGGCTGATTTCTGAACG 59.534 52.381 0.00 0.00 0.00 3.95
1748 1777 2.096496 GCTCGATTTGTCAATCTGGTGG 59.904 50.000 0.00 0.00 37.27 4.61
1751 1780 3.063180 GTCAGCTCGATTTGTCAATCTGG 59.937 47.826 0.00 0.00 37.27 3.86
1754 1783 4.389992 TCTTGTCAGCTCGATTTGTCAATC 59.610 41.667 8.55 0.00 36.20 2.67
1756 1785 3.727726 TCTTGTCAGCTCGATTTGTCAA 58.272 40.909 8.06 8.06 0.00 3.18
1757 1786 3.243873 ACTCTTGTCAGCTCGATTTGTCA 60.244 43.478 0.00 0.00 0.00 3.58
1762 1802 5.992217 ACTTTTTACTCTTGTCAGCTCGATT 59.008 36.000 0.00 0.00 0.00 3.34
1773 1813 8.888579 TCCTACTCTCAAACTTTTTACTCTTG 57.111 34.615 0.00 0.00 0.00 3.02
1774 1814 9.327628 GTTCCTACTCTCAAACTTTTTACTCTT 57.672 33.333 0.00 0.00 0.00 2.85
1775 1815 8.706521 AGTTCCTACTCTCAAACTTTTTACTCT 58.293 33.333 0.00 0.00 0.00 3.24
1776 1816 8.766151 CAGTTCCTACTCTCAAACTTTTTACTC 58.234 37.037 0.00 0.00 30.26 2.59
1777 1817 8.483758 TCAGTTCCTACTCTCAAACTTTTTACT 58.516 33.333 0.00 0.00 30.26 2.24
1778 1818 8.658499 TCAGTTCCTACTCTCAAACTTTTTAC 57.342 34.615 0.00 0.00 30.26 2.01
1779 1819 8.701895 TCTCAGTTCCTACTCTCAAACTTTTTA 58.298 33.333 0.00 0.00 30.26 1.52
1780 1820 7.565680 TCTCAGTTCCTACTCTCAAACTTTTT 58.434 34.615 0.00 0.00 30.26 1.94
1781 1821 7.125792 TCTCAGTTCCTACTCTCAAACTTTT 57.874 36.000 0.00 0.00 30.26 2.27
1782 1822 6.732896 TCTCAGTTCCTACTCTCAAACTTT 57.267 37.500 0.00 0.00 30.26 2.66
1783 1823 6.732896 TTCTCAGTTCCTACTCTCAAACTT 57.267 37.500 0.00 0.00 30.26 2.66
1796 1836 2.508526 ACCTGTTGCATTCTCAGTTCC 58.491 47.619 0.00 0.00 0.00 3.62
1797 1837 4.319177 AGTACCTGTTGCATTCTCAGTTC 58.681 43.478 0.00 0.00 0.00 3.01
1826 1866 3.374058 CGCTTATTGGTGGTTCTAACAGG 59.626 47.826 0.00 0.00 0.00 4.00
1847 1888 6.897259 ATGCTCCATTGAAATTTGAAATCG 57.103 33.333 0.00 0.00 0.00 3.34
1849 1890 7.854337 ACCTATGCTCCATTGAAATTTGAAAT 58.146 30.769 0.00 0.00 0.00 2.17
1872 1913 0.740737 AAAGTCAGCACAGCACAACC 59.259 50.000 0.00 0.00 0.00 3.77
1873 1914 1.534595 CCAAAGTCAGCACAGCACAAC 60.535 52.381 0.00 0.00 0.00 3.32
1881 1926 0.868406 CCGAGTTCCAAAGTCAGCAC 59.132 55.000 0.00 0.00 0.00 4.40
1885 1930 1.689813 TGCTACCGAGTTCCAAAGTCA 59.310 47.619 0.00 0.00 0.00 3.41
1898 1943 0.456221 AGATTCGTCAGGTGCTACCG 59.544 55.000 0.00 0.00 44.90 4.02
1900 1945 4.373348 AAGTAGATTCGTCAGGTGCTAC 57.627 45.455 0.00 0.00 0.00 3.58
1929 1974 9.220767 GTCCTACATTTTCAGAAAGAATGTACT 57.779 33.333 13.24 0.00 42.28 2.73
1930 1975 8.169268 CGTCCTACATTTTCAGAAAGAATGTAC 58.831 37.037 13.24 8.28 42.28 2.90
1931 1976 7.148474 GCGTCCTACATTTTCAGAAAGAATGTA 60.148 37.037 15.27 15.27 42.28 2.29
1934 1979 5.705441 TGCGTCCTACATTTTCAGAAAGAAT 59.295 36.000 0.00 0.00 35.83 2.40
1937 1982 5.551760 ATGCGTCCTACATTTTCAGAAAG 57.448 39.130 0.00 0.00 0.00 2.62
1941 1986 6.455647 TCCTATATGCGTCCTACATTTTCAG 58.544 40.000 0.00 0.00 0.00 3.02
1963 2008 2.851195 ACCCATCACTCGCATAAATCC 58.149 47.619 0.00 0.00 0.00 3.01
1964 2009 3.876914 TCAACCCATCACTCGCATAAATC 59.123 43.478 0.00 0.00 0.00 2.17
1966 2011 3.342377 TCAACCCATCACTCGCATAAA 57.658 42.857 0.00 0.00 0.00 1.40
1967 2012 3.205338 CATCAACCCATCACTCGCATAA 58.795 45.455 0.00 0.00 0.00 1.90
1968 2013 2.837498 CATCAACCCATCACTCGCATA 58.163 47.619 0.00 0.00 0.00 3.14
1969 2014 1.671979 CATCAACCCATCACTCGCAT 58.328 50.000 0.00 0.00 0.00 4.73
1970 2015 1.026182 GCATCAACCCATCACTCGCA 61.026 55.000 0.00 0.00 0.00 5.10
1971 2016 0.745845 AGCATCAACCCATCACTCGC 60.746 55.000 0.00 0.00 0.00 5.03
1972 2017 2.602257 TAGCATCAACCCATCACTCG 57.398 50.000 0.00 0.00 0.00 4.18
1973 2018 3.004106 GCATTAGCATCAACCCATCACTC 59.996 47.826 0.00 0.00 41.58 3.51
1974 2019 2.954318 GCATTAGCATCAACCCATCACT 59.046 45.455 0.00 0.00 41.58 3.41
1994 2039 4.864916 TGAAGAAGACGATGCATTTAGC 57.135 40.909 0.00 0.00 45.96 3.09
1995 2040 6.594284 TCATGAAGAAGACGATGCATTTAG 57.406 37.500 0.00 0.00 0.00 1.85
1996 2041 7.558161 AATCATGAAGAAGACGATGCATTTA 57.442 32.000 0.00 0.00 0.00 1.40
1998 2043 6.127814 ACAAATCATGAAGAAGACGATGCATT 60.128 34.615 0.00 0.00 0.00 3.56
1999 2044 5.356190 ACAAATCATGAAGAAGACGATGCAT 59.644 36.000 0.00 0.00 0.00 3.96
2000 2045 4.696877 ACAAATCATGAAGAAGACGATGCA 59.303 37.500 0.00 0.00 0.00 3.96
2001 2046 5.026462 CACAAATCATGAAGAAGACGATGC 58.974 41.667 0.00 0.00 0.00 3.91
2002 2047 6.174451 ACACAAATCATGAAGAAGACGATG 57.826 37.500 0.00 0.00 0.00 3.84
2003 2048 6.128172 GGAACACAAATCATGAAGAAGACGAT 60.128 38.462 0.00 0.00 0.00 3.73
2004 2049 5.179368 GGAACACAAATCATGAAGAAGACGA 59.821 40.000 0.00 0.00 0.00 4.20
2005 2050 5.049474 TGGAACACAAATCATGAAGAAGACG 60.049 40.000 0.00 0.00 0.00 4.18
2006 2051 6.317789 TGGAACACAAATCATGAAGAAGAC 57.682 37.500 0.00 0.00 0.00 3.01
2291 2336 1.202268 CGATCCCGTACCACTTCACTC 60.202 57.143 0.00 0.00 0.00 3.51
2310 2355 1.595003 GCGTAGATGAGAACGACTCCG 60.595 57.143 10.59 8.08 44.34 4.63
2316 2361 0.098200 TGACCGCGTAGATGAGAACG 59.902 55.000 4.92 0.00 41.92 3.95
2340 2385 1.136828 TGAACCCCGGGAATATGGAG 58.863 55.000 26.32 4.48 0.00 3.86
2349 2394 3.385749 CTCCGTGATGAACCCCGGG 62.386 68.421 15.80 15.80 40.78 5.73
2379 2424 2.654079 CCAGTCCTTGAGCGCCTCT 61.654 63.158 2.29 0.00 0.00 3.69
2457 2502 0.031716 TCTGCAGGAGGTAGATGGCT 60.032 55.000 15.13 0.00 32.90 4.75
2628 2673 1.227060 CGCGAGGATCATGAGCACA 60.227 57.895 13.85 0.00 33.17 4.57
2682 2727 1.781786 ACAGCACTATGACGATCCCT 58.218 50.000 0.00 0.00 0.00 4.20
2769 2814 4.552365 ATCGGCGGATGGCAGGTG 62.552 66.667 7.21 0.00 46.16 4.00
2770 2815 4.552365 CATCGGCGGATGGCAGGT 62.552 66.667 22.88 0.00 45.15 4.00
2843 2897 6.152831 AGTTGAGAAATTACATACCCTTTGGC 59.847 38.462 0.00 0.00 33.59 4.52
2984 3152 1.349357 GTAGGAGATGGGATTCAGGGC 59.651 57.143 0.00 0.00 0.00 5.19
3031 3224 1.301293 GAGGAACAGGAGCAAGGGG 59.699 63.158 0.00 0.00 0.00 4.79
3072 3265 2.517959 CATCCCCTCTGAACTTTTGCA 58.482 47.619 0.00 0.00 0.00 4.08
3087 3280 6.660521 TCTGTATAAATCCATCAATGCATCCC 59.339 38.462 0.00 0.00 0.00 3.85
3322 3532 6.980416 AACTGAGTAAACTGGAGAGTACTT 57.020 37.500 0.00 0.00 0.00 2.24
3325 3535 9.393512 GAGTATAACTGAGTAAACTGGAGAGTA 57.606 37.037 0.00 0.00 0.00 2.59
3370 3580 9.998106 ACACTAGTGTAGTATCAAAAATGTTCT 57.002 29.630 26.91 0.00 42.90 3.01
3372 3582 9.772973 TGACACTAGTGTAGTATCAAAAATGTT 57.227 29.630 27.98 0.00 39.11 2.71
3373 3583 9.772973 TTGACACTAGTGTAGTATCAAAAATGT 57.227 29.630 27.98 0.00 45.96 2.71
3381 3591 7.864307 ACGTTTTTGACACTAGTGTAGTATC 57.136 36.000 27.98 15.61 45.05 2.24
3382 3592 8.139989 AGAACGTTTTTGACACTAGTGTAGTAT 58.860 33.333 27.98 5.50 45.05 2.12
3393 3603 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
3394 3604 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
3395 3605 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
3396 3606 9.451002 TGTCCCATAATATAAGAACGTTTTTGA 57.549 29.630 13.87 2.81 0.00 2.69
3398 3608 9.675464 TCTGTCCCATAATATAAGAACGTTTTT 57.325 29.630 9.22 9.22 0.00 1.94
3399 3609 9.326413 CTCTGTCCCATAATATAAGAACGTTTT 57.674 33.333 0.46 0.00 0.00 2.43
3400 3610 7.931948 CCTCTGTCCCATAATATAAGAACGTTT 59.068 37.037 0.46 0.00 0.00 3.60
3401 3611 7.442656 CCTCTGTCCCATAATATAAGAACGTT 58.557 38.462 0.00 0.00 0.00 3.99
3402 3612 6.014499 CCCTCTGTCCCATAATATAAGAACGT 60.014 42.308 0.00 0.00 0.00 3.99
3404 3614 7.235812 ACTCCCTCTGTCCCATAATATAAGAAC 59.764 40.741 0.00 0.00 0.00 3.01
3405 3615 7.313731 ACTCCCTCTGTCCCATAATATAAGAA 58.686 38.462 0.00 0.00 0.00 2.52
3409 3619 9.883293 CATATACTCCCTCTGTCCCATAATATA 57.117 37.037 0.00 0.00 0.00 0.86
3411 3621 7.950803 TCATATACTCCCTCTGTCCCATAATA 58.049 38.462 0.00 0.00 0.00 0.98
3413 3623 6.227624 TCATATACTCCCTCTGTCCCATAA 57.772 41.667 0.00 0.00 0.00 1.90
3416 3626 4.767000 ATCATATACTCCCTCTGTCCCA 57.233 45.455 0.00 0.00 0.00 4.37
3417 3627 4.647399 GCTATCATATACTCCCTCTGTCCC 59.353 50.000 0.00 0.00 0.00 4.46
3418 3628 5.265191 TGCTATCATATACTCCCTCTGTCC 58.735 45.833 0.00 0.00 0.00 4.02
3419 3629 6.209589 TGTTGCTATCATATACTCCCTCTGTC 59.790 42.308 0.00 0.00 0.00 3.51
3420 3630 6.077993 TGTTGCTATCATATACTCCCTCTGT 58.922 40.000 0.00 0.00 0.00 3.41
3421 3631 6.350864 CCTGTTGCTATCATATACTCCCTCTG 60.351 46.154 0.00 0.00 0.00 3.35
3422 3632 5.719085 CCTGTTGCTATCATATACTCCCTCT 59.281 44.000 0.00 0.00 0.00 3.69
3423 3633 5.482175 ACCTGTTGCTATCATATACTCCCTC 59.518 44.000 0.00 0.00 0.00 4.30
3424 3634 5.407049 ACCTGTTGCTATCATATACTCCCT 58.593 41.667 0.00 0.00 0.00 4.20
3425 3635 5.746990 ACCTGTTGCTATCATATACTCCC 57.253 43.478 0.00 0.00 0.00 4.30
3426 3636 7.603024 GGTTTACCTGTTGCTATCATATACTCC 59.397 40.741 0.00 0.00 0.00 3.85
3427 3637 8.148351 TGGTTTACCTGTTGCTATCATATACTC 58.852 37.037 0.00 0.00 36.82 2.59
3428 3638 8.029782 TGGTTTACCTGTTGCTATCATATACT 57.970 34.615 0.00 0.00 36.82 2.12
3458 3668 5.499139 AGAAATGCAACCATAATACCACG 57.501 39.130 0.00 0.00 0.00 4.94
3459 3669 8.466798 AGTTAAGAAATGCAACCATAATACCAC 58.533 33.333 0.00 0.00 0.00 4.16
3481 3691 5.107133 GCGCCTTGTAAGAGACATAAGTTA 58.893 41.667 0.00 0.00 38.07 2.24
3489 3699 1.009829 CCATGCGCCTTGTAAGAGAC 58.990 55.000 4.18 0.00 0.00 3.36
3505 3715 4.470334 ACAAAATATGCGAAAAGGCCAT 57.530 36.364 5.01 0.00 0.00 4.40
3531 3745 4.511082 GCTCTACTTGATGATCTTTCAGGC 59.489 45.833 7.82 0.00 34.73 4.85
3547 3761 3.553096 CCGCCGAAAAGATATGCTCTACT 60.553 47.826 0.00 0.00 32.41 2.57
3566 3780 3.056328 GAGGCCTGTGGTTTCCGC 61.056 66.667 12.00 0.00 34.12 5.54
3579 3793 3.601443 ATTATCATCTAGGCACGAGGC 57.399 47.619 0.00 0.00 43.74 4.70
3584 3798 8.341173 CAGTTCTTTCAATTATCATCTAGGCAC 58.659 37.037 0.00 0.00 0.00 5.01
3608 3822 7.816945 ACGGCAAAAGATTGAAATTTATCAG 57.183 32.000 4.24 0.00 38.94 2.90
3614 3828 8.303876 ACTGTTATACGGCAAAAGATTGAAATT 58.696 29.630 0.00 0.00 38.94 1.82
3631 3845 5.123820 TGCATCAGAAAGCCAACTGTTATAC 59.876 40.000 0.00 0.00 35.84 1.47
3639 3853 3.120442 GCAATTTGCATCAGAAAGCCAAC 60.120 43.478 16.35 0.00 44.26 3.77
3710 3925 2.932614 ACATACTTTGATGCTCGACTGC 59.067 45.455 0.00 0.00 0.00 4.40
3719 3940 3.947834 GAGGGGTTGGACATACTTTGATG 59.052 47.826 0.00 0.00 0.00 3.07
3724 3945 0.909623 CGGAGGGGTTGGACATACTT 59.090 55.000 0.00 0.00 0.00 2.24
3804 4026 2.014554 CGTGTGTGTACGCTCGCTT 61.015 57.895 17.09 0.00 37.24 4.68
3805 4027 2.428569 CGTGTGTGTACGCTCGCT 60.429 61.111 17.09 0.00 37.24 4.93
3806 4028 2.426183 CTCGTGTGTGTACGCTCGC 61.426 63.158 8.10 9.79 43.40 5.03
3807 4029 0.164432 TACTCGTGTGTGTACGCTCG 59.836 55.000 8.10 12.23 43.40 5.03
3808 4030 1.069703 TGTACTCGTGTGTGTACGCTC 60.070 52.381 8.10 4.68 44.25 5.03
3810 4032 1.047739 GTGTACTCGTGTGTGTACGC 58.952 55.000 0.00 0.00 44.25 4.42
3811 4033 2.568100 GAGTGTACTCGTGTGTGTACG 58.432 52.381 0.00 0.00 44.25 3.67
3822 4044 5.359716 TCGACAGAAGAAAGAGTGTACTC 57.640 43.478 3.85 3.85 43.17 2.59
3823 4045 5.968528 ATCGACAGAAGAAAGAGTGTACT 57.031 39.130 0.00 0.00 0.00 2.73
3824 4046 6.527372 GGTTATCGACAGAAGAAAGAGTGTAC 59.473 42.308 0.00 0.00 0.00 2.90
3825 4047 6.618811 GGTTATCGACAGAAGAAAGAGTGTA 58.381 40.000 0.00 0.00 0.00 2.90
3826 4048 5.471257 GGTTATCGACAGAAGAAAGAGTGT 58.529 41.667 0.00 0.00 0.00 3.55
3829 4051 4.734917 ACGGTTATCGACAGAAGAAAGAG 58.265 43.478 0.00 0.00 42.43 2.85
3830 4052 4.778534 ACGGTTATCGACAGAAGAAAGA 57.221 40.909 0.00 0.00 42.43 2.52
3831 4053 5.840940 AAACGGTTATCGACAGAAGAAAG 57.159 39.130 0.00 0.00 42.43 2.62
3832 4054 5.987347 AGAAAACGGTTATCGACAGAAGAAA 59.013 36.000 0.00 0.00 42.43 2.52
3833 4055 5.535333 AGAAAACGGTTATCGACAGAAGAA 58.465 37.500 0.00 0.00 42.43 2.52
3834 4056 5.130292 AGAAAACGGTTATCGACAGAAGA 57.870 39.130 0.00 0.00 42.43 2.87
3835 4057 4.921515 TGAGAAAACGGTTATCGACAGAAG 59.078 41.667 0.00 0.00 42.43 2.85
3836 4058 4.873817 TGAGAAAACGGTTATCGACAGAA 58.126 39.130 0.00 0.00 42.43 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.