Multiple sequence alignment - TraesCS6D01G331500

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BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G331500 chr6D 100.000 6727 0 0 1 6727 434401729 434408455 0.000000e+00 12423.0
1 TraesCS6D01G331500 chr6D 95.901 4733 155 17 1749 6456 434423418 434428136 0.000000e+00 7629.0
2 TraesCS6D01G331500 chr6D 86.963 2539 290 37 1416 3935 155858740 155856224 0.000000e+00 2817.0
3 TraesCS6D01G331500 chr6D 89.610 2127 182 32 1416 3526 256942312 256940209 0.000000e+00 2667.0
4 TraesCS6D01G331500 chr6D 86.515 1446 165 22 2420 3847 93372230 93370797 0.000000e+00 1563.0
5 TraesCS6D01G331500 chr6D 96.350 548 14 3 5629 6171 459130583 459131129 0.000000e+00 896.0
6 TraesCS6D01G331500 chr6D 96.344 547 15 2 5629 6171 133728159 133727614 0.000000e+00 894.0
7 TraesCS6D01G331500 chr6D 95.985 548 17 2 5629 6171 341622984 341623531 0.000000e+00 885.0
8 TraesCS6D01G331500 chr6D 95.985 548 17 2 5629 6171 397853053 397852506 0.000000e+00 885.0
9 TraesCS6D01G331500 chr6D 95.978 547 18 1 5629 6171 451598734 451598188 0.000000e+00 885.0
10 TraesCS6D01G331500 chr6D 95.985 548 17 2 5629 6171 467235880 467236427 0.000000e+00 885.0
11 TraesCS6D01G331500 chr6D 95.196 562 20 3 5629 6183 59275267 59274706 0.000000e+00 881.0
12 TraesCS6D01G331500 chr6D 95.009 561 22 3 5629 6183 386035031 386034471 0.000000e+00 876.0
13 TraesCS6D01G331500 chr6D 94.966 298 13 1 6159 6456 59274682 59274387 3.670000e-127 466.0
14 TraesCS6D01G331500 chr6D 97.091 275 8 0 6453 6727 62825333 62825607 1.320000e-126 464.0
15 TraesCS6D01G331500 chr6D 96.364 275 10 0 6453 6727 45847155 45846881 2.860000e-123 453.0
16 TraesCS6D01G331500 chr6D 94.203 276 15 1 6453 6727 370866446 370866171 2.900000e-113 420.0
17 TraesCS6D01G331500 chr6D 93.818 275 17 0 6453 6727 49408546 49408820 1.350000e-111 414.0
18 TraesCS6D01G331500 chr6D 84.101 434 60 9 5200 5629 277399698 277400126 1.750000e-110 411.0
19 TraesCS6D01G331500 chr6D 93.091 275 18 1 6453 6727 139808258 139807985 1.050000e-107 401.0
20 TraesCS6D01G331500 chr6D 92.364 275 21 0 6453 6727 46305732 46306006 6.320000e-105 392.0
21 TraesCS6D01G331500 chr6D 92.308 273 21 0 6453 6725 239211434 239211162 8.180000e-104 388.0
22 TraesCS6D01G331500 chr6D 92.308 273 21 0 6453 6725 239215925 239215653 8.180000e-104 388.0
23 TraesCS6D01G331500 chr6D 97.024 168 5 0 6289 6456 386034395 386034228 3.970000e-72 283.0
24 TraesCS6D01G331500 chr6D 97.024 168 5 0 6289 6456 397852417 397852250 3.970000e-72 283.0
25 TraesCS6D01G331500 chr6D 96.429 168 6 0 6289 6456 5278182 5278015 1.850000e-70 278.0
26 TraesCS6D01G331500 chr6D 96.429 168 6 0 6289 6456 42262517 42262350 1.850000e-70 278.0
27 TraesCS6D01G331500 chr6D 96.429 168 6 0 6289 6456 133727527 133727360 1.850000e-70 278.0
28 TraesCS6D01G331500 chr2A 87.805 2460 257 37 1416 3847 355334475 355332031 0.000000e+00 2841.0
29 TraesCS6D01G331500 chr2A 87.186 2466 263 39 1420 3847 355343013 355340563 0.000000e+00 2754.0
30 TraesCS6D01G331500 chr1D 90.483 2133 173 24 1416 3535 338582332 338580217 0.000000e+00 2787.0
31 TraesCS6D01G331500 chr1D 86.171 2596 296 50 1416 3987 293154650 293152094 0.000000e+00 2747.0
32 TraesCS6D01G331500 chr1D 82.946 2152 288 61 1863 3983 200672239 200670136 0.000000e+00 1868.0
33 TraesCS6D01G331500 chr1D 92.035 1243 81 9 4391 5628 200669744 200668515 0.000000e+00 1731.0
34 TraesCS6D01G331500 chr1D 96.161 547 17 1 5629 6171 39390737 39390191 0.000000e+00 891.0
35 TraesCS6D01G331500 chr1D 92.205 449 31 4 5193 5638 379657849 379658296 3.420000e-177 632.0
36 TraesCS6D01G331500 chr1D 84.567 473 66 7 5160 5628 109085836 109085367 4.750000e-126 462.0
37 TraesCS6D01G331500 chr1D 94.333 300 12 4 6159 6456 417883919 417883623 7.950000e-124 455.0
38 TraesCS6D01G331500 chr1D 84.177 474 65 10 5160 5629 109093974 109093507 1.030000e-122 451.0
39 TraesCS6D01G331500 chr1D 96.000 275 11 0 6453 6727 409646799 409647073 1.330000e-121 448.0
40 TraesCS6D01G331500 chr1D 83.579 475 69 9 5160 5628 402176712 402177183 2.880000e-118 436.0
41 TraesCS6D01G331500 chr1D 97.024 168 5 0 6289 6456 466979810 466979643 3.970000e-72 283.0
42 TraesCS6D01G331500 chr1D 77.778 162 32 4 3825 3984 113512220 113512061 5.550000e-16 97.1
43 TraesCS6D01G331500 chr7D 90.510 2118 172 25 1424 3526 348056514 348054411 0.000000e+00 2771.0
44 TraesCS6D01G331500 chr7D 89.948 2129 182 26 1416 3526 348047775 348045661 0.000000e+00 2717.0
45 TraesCS6D01G331500 chr7D 89.493 2132 193 26 1416 3535 437783000 437780888 0.000000e+00 2667.0
46 TraesCS6D01G331500 chr7D 86.616 2122 235 43 1416 3510 190171482 190169383 0.000000e+00 2300.0
47 TraesCS6D01G331500 chr7D 86.184 2128 252 36 1421 3526 405131730 405129623 0.000000e+00 2263.0
48 TraesCS6D01G331500 chr7D 96.533 548 14 2 5629 6171 404004147 404004694 0.000000e+00 902.0
49 TraesCS6D01G331500 chr7D 87.887 743 48 9 4905 5628 364968037 364967318 0.000000e+00 835.0
50 TraesCS6D01G331500 chr7D 97.005 434 12 1 987 1420 421676271 421676703 0.000000e+00 728.0
51 TraesCS6D01G331500 chr7D 96.774 434 13 1 987 1420 215740915 215741347 0.000000e+00 723.0
52 TraesCS6D01G331500 chr7D 96.644 298 7 2 6159 6456 591981309 591981015 6.060000e-135 492.0
53 TraesCS6D01G331500 chr7D 95.318 299 13 1 6159 6456 510256729 510257027 2.200000e-129 473.0
54 TraesCS6D01G331500 chr7D 97.091 275 8 0 6453 6727 533605366 533605640 1.320000e-126 464.0
55 TraesCS6D01G331500 chr5D 90.324 2129 181 24 1420 3535 258279970 258277854 0.000000e+00 2767.0
56 TraesCS6D01G331500 chr5D 95.291 998 35 11 1 990 409099633 409098640 0.000000e+00 1572.0
57 TraesCS6D01G331500 chr5D 94.753 991 46 6 1 987 409089675 409088687 0.000000e+00 1537.0
58 TraesCS6D01G331500 chr5D 94.467 994 44 11 1 987 238562440 238563429 0.000000e+00 1520.0
59 TraesCS6D01G331500 chr5D 94.300 1000 42 13 1 990 518927077 518926083 0.000000e+00 1517.0
60 TraesCS6D01G331500 chr5D 97.075 547 12 1 5629 6171 58008203 58007657 0.000000e+00 918.0
61 TraesCS6D01G331500 chr5D 96.085 562 15 3 5629 6183 391882410 391881849 0.000000e+00 909.0
62 TraesCS6D01G331500 chr5D 96.715 548 12 3 5629 6171 56214401 56214947 0.000000e+00 907.0
63 TraesCS6D01G331500 chr5D 96.709 547 14 1 5629 6171 426131761 426132307 0.000000e+00 907.0
64 TraesCS6D01G331500 chr5D 95.745 564 15 4 5629 6183 306884760 306884197 0.000000e+00 900.0
65 TraesCS6D01G331500 chr5D 95.544 561 18 4 5629 6183 332702949 332702390 0.000000e+00 891.0
66 TraesCS6D01G331500 chr5D 97.011 435 12 1 987 1420 391882840 391882406 0.000000e+00 730.0
67 TraesCS6D01G331500 chr5D 96.774 434 13 1 987 1420 426131333 426131765 0.000000e+00 723.0
68 TraesCS6D01G331500 chr5D 96.774 434 13 1 987 1420 543175261 543175693 0.000000e+00 723.0
69 TraesCS6D01G331500 chr5D 96.309 298 10 1 6159 6456 531610337 531610041 7.840000e-134 488.0
70 TraesCS6D01G331500 chr5D 85.232 474 64 6 5160 5629 78890778 78891249 3.650000e-132 483.0
71 TraesCS6D01G331500 chr5D 95.638 298 12 1 6159 6456 440112096 440111800 1.700000e-130 477.0
72 TraesCS6D01G331500 chr5D 85.053 475 60 10 5160 5628 78898864 78899333 2.200000e-129 473.0
73 TraesCS6D01G331500 chr5D 96.364 275 10 0 6453 6727 173359960 173359686 2.860000e-123 453.0
74 TraesCS6D01G331500 chr5D 96.000 275 11 0 6453 6727 480168238 480168512 1.330000e-121 448.0
75 TraesCS6D01G331500 chr5D 96.000 275 11 0 6453 6727 496046241 496045967 1.330000e-121 448.0
76 TraesCS6D01G331500 chr4A 87.212 2471 257 43 1416 3847 593408538 593406088 0.000000e+00 2758.0
77 TraesCS6D01G331500 chr4A 84.944 1335 157 28 4320 5628 663011864 663010548 0.000000e+00 1312.0
78 TraesCS6D01G331500 chr4A 84.719 1335 161 28 4320 5629 663020120 663018804 0.000000e+00 1295.0
79 TraesCS6D01G331500 chr2D 89.667 2129 190 26 1421 3535 540673673 540675785 0.000000e+00 2686.0
80 TraesCS6D01G331500 chr2D 87.214 2143 230 42 1416 3535 200089713 200087592 0.000000e+00 2399.0
81 TraesCS6D01G331500 chr2D 86.975 2119 233 36 1416 3510 142567169 142565070 0.000000e+00 2344.0
82 TraesCS6D01G331500 chr2D 95.984 996 34 6 1 990 598843748 598842753 0.000000e+00 1613.0
83 TraesCS6D01G331500 chr2D 95.775 994 34 6 1 987 435165970 435166962 0.000000e+00 1596.0
84 TraesCS6D01G331500 chr2D 95.386 997 38 6 1 991 435159007 435160001 0.000000e+00 1580.0
85 TraesCS6D01G331500 chr2D 94.657 992 47 6 1 988 551373417 551372428 0.000000e+00 1533.0
86 TraesCS6D01G331500 chr2D 95.907 562 16 3 5629 6183 46526662 46527223 0.000000e+00 904.0
87 TraesCS6D01G331500 chr2D 97.005 434 12 1 987 1420 76713758 76714190 0.000000e+00 728.0
88 TraesCS6D01G331500 chr2D 97.005 434 12 1 987 1420 378582610 378582178 0.000000e+00 728.0
89 TraesCS6D01G331500 chr2D 96.309 298 11 0 6159 6456 46527247 46527544 2.180000e-134 490.0
90 TraesCS6D01G331500 chr2D 97.091 275 8 0 6453 6727 324089853 324090127 1.320000e-126 464.0
91 TraesCS6D01G331500 chr2D 97.101 276 7 1 6453 6727 404072440 404072715 1.320000e-126 464.0
92 TraesCS6D01G331500 chr6B 88.544 2252 200 46 1857 4083 251671279 251673497 0.000000e+00 2676.0
93 TraesCS6D01G331500 chr6B 88.405 2251 210 42 1857 4083 251629318 251631541 0.000000e+00 2663.0
94 TraesCS6D01G331500 chr6B 89.604 1212 80 16 4336 5527 342581578 342582763 0.000000e+00 1498.0
95 TraesCS6D01G331500 chr6B 84.259 1315 168 23 4336 5629 306545294 306546590 0.000000e+00 1245.0
96 TraesCS6D01G331500 chr6B 83.901 1174 146 30 4480 5628 306564832 306565987 0.000000e+00 1081.0
97 TraesCS6D01G331500 chr6B 89.771 743 63 6 4329 5067 251673485 251674218 0.000000e+00 939.0
98 TraesCS6D01G331500 chr6B 95.560 563 16 5 5629 6183 151619226 151619787 0.000000e+00 893.0
99 TraesCS6D01G331500 chr6B 89.951 607 51 6 4459 5065 251631957 251632553 0.000000e+00 774.0
100 TraesCS6D01G331500 chr6B 90.753 584 32 7 5065 5629 251718224 251718804 0.000000e+00 760.0
101 TraesCS6D01G331500 chr6B 95.302 298 12 2 6159 6456 234531909 234531614 7.900000e-129 472.0
102 TraesCS6D01G331500 chr6B 86.740 181 16 6 4307 4484 306553546 306553721 1.910000e-45 195.0
103 TraesCS6D01G331500 chr3D 89.353 2132 201 25 1416 3535 292815139 292813022 0.000000e+00 2656.0
104 TraesCS6D01G331500 chr3D 84.911 2598 305 65 1423 3983 339052537 339055084 0.000000e+00 2545.0
105 TraesCS6D01G331500 chr3D 90.867 1303 79 12 4354 5629 339067645 339068934 0.000000e+00 1711.0
106 TraesCS6D01G331500 chr3D 90.193 1295 98 14 4353 5629 339055399 339056682 0.000000e+00 1661.0
107 TraesCS6D01G331500 chr3D 94.289 998 46 10 1 990 388857930 388856936 0.000000e+00 1517.0
108 TraesCS6D01G331500 chr3D 95.907 562 16 3 5629 6183 384996673 384997234 0.000000e+00 904.0
109 TraesCS6D01G331500 chr3D 97.235 434 12 0 987 1420 551734222 551733789 0.000000e+00 736.0
110 TraesCS6D01G331500 chr3D 96.774 434 12 2 987 1420 357390658 357391089 0.000000e+00 723.0
111 TraesCS6D01G331500 chr3D 98.566 279 3 1 6178 6456 384975395 384975672 6.060000e-135 492.0
112 TraesCS6D01G331500 chr3D 96.309 298 9 2 6159 6456 543131970 543131675 7.840000e-134 488.0
113 TraesCS6D01G331500 chr1B 87.453 2136 233 32 1420 3535 348437759 348435639 0.000000e+00 2427.0
114 TraesCS6D01G331500 chr1B 87.085 2137 241 32 1419 3535 348429644 348427523 0.000000e+00 2385.0
115 TraesCS6D01G331500 chr1B 84.467 1352 165 27 4307 5635 237136872 237135543 0.000000e+00 1291.0
116 TraesCS6D01G331500 chr1B 84.518 1337 160 30 4320 5629 237144985 237143669 0.000000e+00 1279.0
117 TraesCS6D01G331500 chr1B 84.860 535 72 9 3456 3987 38285341 38285869 1.280000e-146 531.0
118 TraesCS6D01G331500 chr1B 95.638 298 11 1 6159 6454 487689528 487689231 1.700000e-130 477.0
119 TraesCS6D01G331500 chr1B 91.724 290 21 3 3795 4083 237145249 237144962 3.780000e-107 399.0
120 TraesCS6D01G331500 chrUn 88.383 1997 196 34 1416 3390 131903486 131901504 0.000000e+00 2370.0
121 TraesCS6D01G331500 chrUn 94.727 550 18 3 5629 6171 111090225 111089680 0.000000e+00 845.0
122 TraesCS6D01G331500 chrUn 92.705 562 30 5 5629 6183 37645039 37644482 0.000000e+00 800.0
123 TraesCS6D01G331500 chrUn 92.705 562 30 5 5629 6183 251164934 251165491 0.000000e+00 800.0
124 TraesCS6D01G331500 chrUn 81.054 987 148 34 2778 3747 59030682 59029718 0.000000e+00 750.0
125 TraesCS6D01G331500 chrUn 95.122 451 16 2 5629 6075 130605791 130606239 0.000000e+00 706.0
126 TraesCS6D01G331500 chrUn 94.649 299 14 2 6159 6456 37644458 37644161 4.750000e-126 462.0
127 TraesCS6D01G331500 chrUn 94.649 299 14 2 6159 6456 251165515 251165812 4.750000e-126 462.0
128 TraesCS6D01G331500 chrUn 95.985 274 11 0 6454 6727 19281861 19281588 4.790000e-121 446.0
129 TraesCS6D01G331500 chrUn 78.752 673 116 20 4979 5629 286878803 286879470 6.240000e-115 425.0
130 TraesCS6D01G331500 chrUn 84.091 440 63 7 5193 5629 315046587 315046152 1.040000e-112 418.0
131 TraesCS6D01G331500 chrUn 83.742 449 63 10 5184 5628 470622370 470621928 3.750000e-112 416.0
132 TraesCS6D01G331500 chrUn 83.778 450 62 11 5184 5628 471003485 471003042 3.750000e-112 416.0
133 TraesCS6D01G331500 chrUn 83.991 431 61 8 5203 5629 363464280 363464706 2.260000e-109 407.0
134 TraesCS6D01G331500 chrUn 83.260 454 63 11 5184 5629 79060950 79060502 8.120000e-109 405.0
135 TraesCS6D01G331500 chrUn 83.445 447 63 11 5187 5629 302412699 302412260 8.120000e-109 405.0
136 TraesCS6D01G331500 chrUn 83.259 448 65 10 5187 5631 250831314 250830874 2.920000e-108 403.0
137 TraesCS6D01G331500 chrUn 83.879 428 61 8 5205 5628 441182406 441182829 1.050000e-107 401.0
138 TraesCS6D01G331500 chrUn 83.678 435 62 8 5199 5628 471377705 471378135 1.050000e-107 401.0
139 TraesCS6D01G331500 chrUn 83.803 426 61 8 5208 5629 376751149 376750728 1.360000e-106 398.0
140 TraesCS6D01G331500 chrUn 92.308 286 11 1 6453 6727 93575843 93575558 4.890000e-106 396.0
141 TraesCS6D01G331500 chrUn 91.259 286 14 1 6453 6727 259825017 259825302 4.920000e-101 379.0
142 TraesCS6D01G331500 chrUn 91.259 286 14 1 6453 6727 273728858 273728573 4.920000e-101 379.0
143 TraesCS6D01G331500 chrUn 89.860 286 18 3 6453 6727 83030831 83030546 2.310000e-94 357.0
144 TraesCS6D01G331500 chrUn 89.860 286 18 1 6453 6727 97914774 97915059 2.310000e-94 357.0
145 TraesCS6D01G331500 chrUn 89.860 286 18 1 6453 6727 203375821 203375536 2.310000e-94 357.0
146 TraesCS6D01G331500 chrUn 89.825 285 18 1 6454 6727 126776161 126775877 8.300000e-94 355.0
147 TraesCS6D01G331500 chrUn 89.474 285 19 2 6454 6727 113143383 113143099 3.860000e-92 350.0
148 TraesCS6D01G331500 chrUn 76.423 615 115 23 3283 3878 456574013 456574616 8.480000e-79 305.0
149 TraesCS6D01G331500 chrUn 85.417 288 27 4 6453 6727 127165643 127165358 1.100000e-72 285.0
150 TraesCS6D01G331500 chrUn 95.833 168 7 0 6289 6456 111089593 111089426 8.600000e-69 272.0
151 TraesCS6D01G331500 chrUn 85.338 266 24 5 6475 6727 203678875 203678612 1.860000e-65 261.0
152 TraesCS6D01G331500 chrUn 86.066 122 17 0 3754 3875 56737786 56737665 1.520000e-26 132.0
153 TraesCS6D01G331500 chrUn 92.857 84 6 0 6321 6404 130606392 130606475 9.160000e-24 122.0
154 TraesCS6D01G331500 chrUn 93.548 62 4 0 6666 6727 101088803 101088742 7.180000e-15 93.5
155 TraesCS6D01G331500 chrUn 93.548 62 4 0 6666 6727 101439941 101439880 7.180000e-15 93.5
156 TraesCS6D01G331500 chrUn 93.651 63 3 1 6666 6727 211895479 211895541 7.180000e-15 93.5
157 TraesCS6D01G331500 chrUn 96.970 33 1 0 6424 6456 130606475 130606507 1.000000e-03 56.5
158 TraesCS6D01G331500 chr3B 86.374 2121 231 49 1420 3508 286442940 286445034 0.000000e+00 2263.0
159 TraesCS6D01G331500 chr3B 84.421 1348 165 29 4307 5629 389750315 389751642 0.000000e+00 1284.0
160 TraesCS6D01G331500 chr3B 84.199 1348 168 28 4307 5629 389758108 389759435 0.000000e+00 1267.0
161 TraesCS6D01G331500 chr3A 86.598 1358 158 21 2506 3847 260995948 260997297 0.000000e+00 1478.0
162 TraesCS6D01G331500 chr2B 85.019 1335 157 27 4320 5629 184150871 184149555 0.000000e+00 1317.0
163 TraesCS6D01G331500 chr2B 84.776 1340 160 28 4320 5634 184142736 184141416 0.000000e+00 1304.0
164 TraesCS6D01G331500 chr7B 84.783 1334 160 27 4320 5628 103576504 103575189 0.000000e+00 1299.0
165 TraesCS6D01G331500 chr1A 89.536 841 65 14 4400 5238 120383166 120382347 0.000000e+00 1044.0
166 TraesCS6D01G331500 chr1A 95.638 298 13 0 6159 6456 513065684 513065387 4.720000e-131 479.0
167 TraesCS6D01G331500 chr4D 96.533 548 13 3 5629 6171 277289628 277290174 0.000000e+00 902.0
168 TraesCS6D01G331500 chr4D 96.527 547 14 2 5629 6171 280141453 280141998 0.000000e+00 900.0
169 TraesCS6D01G331500 chr4D 96.350 548 15 2 5629 6171 329902795 329903342 0.000000e+00 896.0
170 TraesCS6D01G331500 chr4D 96.168 548 16 2 5629 6171 67959012 67958465 0.000000e+00 891.0
171 TraesCS6D01G331500 chr4D 84.244 476 66 8 5160 5629 452578114 452578586 7.950000e-124 455.0
172 TraesCS6D01G331500 chr4D 96.000 275 11 0 6453 6727 312357377 312357651 1.330000e-121 448.0
173 TraesCS6D01G331500 chr4D 94.444 288 14 2 6440 6727 367359650 367359935 6.190000e-120 442.0
174 TraesCS6D01G331500 chr4D 95.273 275 13 0 6453 6727 299941667 299941393 2.880000e-118 436.0
175 TraesCS6D01G331500 chr4D 92.953 298 18 2 6159 6456 313382947 313382653 1.340000e-116 431.0
176 TraesCS6D01G331500 chr4D 77.232 224 33 16 4888 5100 486195659 486195875 1.530000e-21 115.0
177 TraesCS6D01G331500 chr7A 92.922 438 28 3 5192 5629 634144919 634145353 9.520000e-178 634.0
178 TraesCS6D01G331500 chr7A 92.744 441 28 4 5192 5631 634153119 634153556 9.520000e-178 634.0
179 TraesCS6D01G331500 chr6A 90.971 443 32 7 5190 5628 318269422 318268984 2.090000e-164 590.0
180 TraesCS6D01G331500 chr6A 90.596 436 36 4 5197 5629 318277856 318277423 2.100000e-159 573.0
181 TraesCS6D01G331500 chr4B 96.644 298 10 0 6159 6456 379062534 379062831 4.690000e-136 496.0
182 TraesCS6D01G331500 chr4B 96.321 299 10 1 6159 6456 615789956 615789658 2.180000e-134 490.0
183 TraesCS6D01G331500 chr4B 75.502 249 49 10 3802 4041 416265752 416265507 1.980000e-20 111.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G331500 chr6D 434401729 434408455 6726 False 12423.000000 12423 100.0000 1 6727 1 chr6D.!!$F6 6726
1 TraesCS6D01G331500 chr6D 434423418 434428136 4718 False 7629.000000 7629 95.9010 1749 6456 1 chr6D.!!$F7 4707
2 TraesCS6D01G331500 chr6D 155856224 155858740 2516 True 2817.000000 2817 86.9630 1416 3935 1 chr6D.!!$R6 2519
3 TraesCS6D01G331500 chr6D 256940209 256942312 2103 True 2667.000000 2667 89.6100 1416 3526 1 chr6D.!!$R9 2110
4 TraesCS6D01G331500 chr6D 93370797 93372230 1433 True 1563.000000 1563 86.5150 2420 3847 1 chr6D.!!$R4 1427
5 TraesCS6D01G331500 chr6D 459130583 459131129 546 False 896.000000 896 96.3500 5629 6171 1 chr6D.!!$F8 542
6 TraesCS6D01G331500 chr6D 341622984 341623531 547 False 885.000000 885 95.9850 5629 6171 1 chr6D.!!$F5 542
7 TraesCS6D01G331500 chr6D 451598188 451598734 546 True 885.000000 885 95.9780 5629 6171 1 chr6D.!!$R11 542
8 TraesCS6D01G331500 chr6D 467235880 467236427 547 False 885.000000 885 95.9850 5629 6171 1 chr6D.!!$F9 542
9 TraesCS6D01G331500 chr6D 59274387 59275267 880 True 673.500000 881 95.0810 5629 6456 2 chr6D.!!$R12 827
10 TraesCS6D01G331500 chr6D 133727360 133728159 799 True 586.000000 894 96.3865 5629 6456 2 chr6D.!!$R13 827
11 TraesCS6D01G331500 chr6D 397852250 397853053 803 True 584.000000 885 96.5045 5629 6456 2 chr6D.!!$R15 827
12 TraesCS6D01G331500 chr6D 386034228 386035031 803 True 579.500000 876 96.0165 5629 6456 2 chr6D.!!$R14 827
13 TraesCS6D01G331500 chr2A 355332031 355334475 2444 True 2841.000000 2841 87.8050 1416 3847 1 chr2A.!!$R1 2431
14 TraesCS6D01G331500 chr2A 355340563 355343013 2450 True 2754.000000 2754 87.1860 1420 3847 1 chr2A.!!$R2 2427
15 TraesCS6D01G331500 chr1D 338580217 338582332 2115 True 2787.000000 2787 90.4830 1416 3535 1 chr1D.!!$R6 2119
16 TraesCS6D01G331500 chr1D 293152094 293154650 2556 True 2747.000000 2747 86.1710 1416 3987 1 chr1D.!!$R5 2571
17 TraesCS6D01G331500 chr1D 200668515 200672239 3724 True 1799.500000 1868 87.4905 1863 5628 2 chr1D.!!$R9 3765
18 TraesCS6D01G331500 chr1D 39390191 39390737 546 True 891.000000 891 96.1610 5629 6171 1 chr1D.!!$R1 542
19 TraesCS6D01G331500 chr7D 348054411 348056514 2103 True 2771.000000 2771 90.5100 1424 3526 1 chr7D.!!$R3 2102
20 TraesCS6D01G331500 chr7D 348045661 348047775 2114 True 2717.000000 2717 89.9480 1416 3526 1 chr7D.!!$R2 2110
21 TraesCS6D01G331500 chr7D 437780888 437783000 2112 True 2667.000000 2667 89.4930 1416 3535 1 chr7D.!!$R6 2119
22 TraesCS6D01G331500 chr7D 190169383 190171482 2099 True 2300.000000 2300 86.6160 1416 3510 1 chr7D.!!$R1 2094
23 TraesCS6D01G331500 chr7D 405129623 405131730 2107 True 2263.000000 2263 86.1840 1421 3526 1 chr7D.!!$R5 2105
24 TraesCS6D01G331500 chr7D 404004147 404004694 547 False 902.000000 902 96.5330 5629 6171 1 chr7D.!!$F2 542
25 TraesCS6D01G331500 chr7D 364967318 364968037 719 True 835.000000 835 87.8870 4905 5628 1 chr7D.!!$R4 723
26 TraesCS6D01G331500 chr5D 258277854 258279970 2116 True 2767.000000 2767 90.3240 1420 3535 1 chr5D.!!$R3 2115
27 TraesCS6D01G331500 chr5D 409098640 409099633 993 True 1572.000000 1572 95.2910 1 990 1 chr5D.!!$R7 989
28 TraesCS6D01G331500 chr5D 409088687 409089675 988 True 1537.000000 1537 94.7530 1 987 1 chr5D.!!$R6 986
29 TraesCS6D01G331500 chr5D 238562440 238563429 989 False 1520.000000 1520 94.4670 1 987 1 chr5D.!!$F4 986
30 TraesCS6D01G331500 chr5D 518926083 518927077 994 True 1517.000000 1517 94.3000 1 990 1 chr5D.!!$R10 989
31 TraesCS6D01G331500 chr5D 58007657 58008203 546 True 918.000000 918 97.0750 5629 6171 1 chr5D.!!$R1 542
32 TraesCS6D01G331500 chr5D 56214401 56214947 546 False 907.000000 907 96.7150 5629 6171 1 chr5D.!!$F1 542
33 TraesCS6D01G331500 chr5D 306884197 306884760 563 True 900.000000 900 95.7450 5629 6183 1 chr5D.!!$R4 554
34 TraesCS6D01G331500 chr5D 332702390 332702949 559 True 891.000000 891 95.5440 5629 6183 1 chr5D.!!$R5 554
35 TraesCS6D01G331500 chr5D 391881849 391882840 991 True 819.500000 909 96.5480 987 6183 2 chr5D.!!$R12 5196
36 TraesCS6D01G331500 chr5D 426131333 426132307 974 False 815.000000 907 96.7415 987 6171 2 chr5D.!!$F7 5184
37 TraesCS6D01G331500 chr4A 593406088 593408538 2450 True 2758.000000 2758 87.2120 1416 3847 1 chr4A.!!$R1 2431
38 TraesCS6D01G331500 chr4A 663010548 663011864 1316 True 1312.000000 1312 84.9440 4320 5628 1 chr4A.!!$R2 1308
39 TraesCS6D01G331500 chr4A 663018804 663020120 1316 True 1295.000000 1295 84.7190 4320 5629 1 chr4A.!!$R3 1309
40 TraesCS6D01G331500 chr2D 540673673 540675785 2112 False 2686.000000 2686 89.6670 1421 3535 1 chr2D.!!$F6 2114
41 TraesCS6D01G331500 chr2D 200087592 200089713 2121 True 2399.000000 2399 87.2140 1416 3535 1 chr2D.!!$R2 2119
42 TraesCS6D01G331500 chr2D 142565070 142567169 2099 True 2344.000000 2344 86.9750 1416 3510 1 chr2D.!!$R1 2094
43 TraesCS6D01G331500 chr2D 598842753 598843748 995 True 1613.000000 1613 95.9840 1 990 1 chr2D.!!$R5 989
44 TraesCS6D01G331500 chr2D 435165970 435166962 992 False 1596.000000 1596 95.7750 1 987 1 chr2D.!!$F5 986
45 TraesCS6D01G331500 chr2D 435159007 435160001 994 False 1580.000000 1580 95.3860 1 991 1 chr2D.!!$F4 990
46 TraesCS6D01G331500 chr2D 551372428 551373417 989 True 1533.000000 1533 94.6570 1 988 1 chr2D.!!$R4 987
47 TraesCS6D01G331500 chr2D 46526662 46527544 882 False 697.000000 904 96.1080 5629 6456 2 chr2D.!!$F7 827
48 TraesCS6D01G331500 chr6B 251671279 251674218 2939 False 1807.500000 2676 89.1575 1857 5067 2 chr6B.!!$F8 3210
49 TraesCS6D01G331500 chr6B 251629318 251632553 3235 False 1718.500000 2663 89.1780 1857 5065 2 chr6B.!!$F7 3208
50 TraesCS6D01G331500 chr6B 342581578 342582763 1185 False 1498.000000 1498 89.6040 4336 5527 1 chr6B.!!$F6 1191
51 TraesCS6D01G331500 chr6B 306545294 306546590 1296 False 1245.000000 1245 84.2590 4336 5629 1 chr6B.!!$F3 1293
52 TraesCS6D01G331500 chr6B 306564832 306565987 1155 False 1081.000000 1081 83.9010 4480 5628 1 chr6B.!!$F5 1148
53 TraesCS6D01G331500 chr6B 151619226 151619787 561 False 893.000000 893 95.5600 5629 6183 1 chr6B.!!$F1 554
54 TraesCS6D01G331500 chr6B 251718224 251718804 580 False 760.000000 760 90.7530 5065 5629 1 chr6B.!!$F2 564
55 TraesCS6D01G331500 chr3D 292813022 292815139 2117 True 2656.000000 2656 89.3530 1416 3535 1 chr3D.!!$R1 2119
56 TraesCS6D01G331500 chr3D 339052537 339056682 4145 False 2103.000000 2545 87.5520 1423 5629 2 chr3D.!!$F5 4206
57 TraesCS6D01G331500 chr3D 339067645 339068934 1289 False 1711.000000 1711 90.8670 4354 5629 1 chr3D.!!$F1 1275
58 TraesCS6D01G331500 chr3D 388856936 388857930 994 True 1517.000000 1517 94.2890 1 990 1 chr3D.!!$R2 989
59 TraesCS6D01G331500 chr3D 384996673 384997234 561 False 904.000000 904 95.9070 5629 6183 1 chr3D.!!$F4 554
60 TraesCS6D01G331500 chr1B 348435639 348437759 2120 True 2427.000000 2427 87.4530 1420 3535 1 chr1B.!!$R3 2115
61 TraesCS6D01G331500 chr1B 348427523 348429644 2121 True 2385.000000 2385 87.0850 1419 3535 1 chr1B.!!$R2 2116
62 TraesCS6D01G331500 chr1B 237135543 237136872 1329 True 1291.000000 1291 84.4670 4307 5635 1 chr1B.!!$R1 1328
63 TraesCS6D01G331500 chr1B 237143669 237145249 1580 True 839.000000 1279 88.1210 3795 5629 2 chr1B.!!$R5 1834
64 TraesCS6D01G331500 chr1B 38285341 38285869 528 False 531.000000 531 84.8600 3456 3987 1 chr1B.!!$F1 531
65 TraesCS6D01G331500 chrUn 131901504 131903486 1982 True 2370.000000 2370 88.3830 1416 3390 1 chrUn.!!$R12 1974
66 TraesCS6D01G331500 chrUn 59029718 59030682 964 True 750.000000 750 81.0540 2778 3747 1 chrUn.!!$R3 969
67 TraesCS6D01G331500 chrUn 37644161 37645039 878 True 631.000000 800 93.6770 5629 6456 2 chrUn.!!$R22 827
68 TraesCS6D01G331500 chrUn 251164934 251165812 878 False 631.000000 800 93.6770 5629 6456 2 chrUn.!!$F10 827
69 TraesCS6D01G331500 chrUn 111089426 111090225 799 True 558.500000 845 95.2800 5629 6456 2 chrUn.!!$R23 827
70 TraesCS6D01G331500 chrUn 286878803 286879470 667 False 425.000000 425 78.7520 4979 5629 1 chrUn.!!$F4 650
71 TraesCS6D01G331500 chrUn 456574013 456574616 603 False 305.000000 305 76.4230 3283 3878 1 chrUn.!!$F7 595
72 TraesCS6D01G331500 chrUn 130605791 130606507 716 False 294.833333 706 94.9830 5629 6456 3 chrUn.!!$F9 827
73 TraesCS6D01G331500 chr3B 286442940 286445034 2094 False 2263.000000 2263 86.3740 1420 3508 1 chr3B.!!$F1 2088
74 TraesCS6D01G331500 chr3B 389750315 389751642 1327 False 1284.000000 1284 84.4210 4307 5629 1 chr3B.!!$F2 1322
75 TraesCS6D01G331500 chr3B 389758108 389759435 1327 False 1267.000000 1267 84.1990 4307 5629 1 chr3B.!!$F3 1322
76 TraesCS6D01G331500 chr3A 260995948 260997297 1349 False 1478.000000 1478 86.5980 2506 3847 1 chr3A.!!$F1 1341
77 TraesCS6D01G331500 chr2B 184149555 184150871 1316 True 1317.000000 1317 85.0190 4320 5629 1 chr2B.!!$R2 1309
78 TraesCS6D01G331500 chr2B 184141416 184142736 1320 True 1304.000000 1304 84.7760 4320 5634 1 chr2B.!!$R1 1314
79 TraesCS6D01G331500 chr7B 103575189 103576504 1315 True 1299.000000 1299 84.7830 4320 5628 1 chr7B.!!$R1 1308
80 TraesCS6D01G331500 chr1A 120382347 120383166 819 True 1044.000000 1044 89.5360 4400 5238 1 chr1A.!!$R1 838
81 TraesCS6D01G331500 chr4D 277289628 277290174 546 False 902.000000 902 96.5330 5629 6171 1 chr4D.!!$F1 542
82 TraesCS6D01G331500 chr4D 280141453 280141998 545 False 900.000000 900 96.5270 5629 6171 1 chr4D.!!$F2 542
83 TraesCS6D01G331500 chr4D 329902795 329903342 547 False 896.000000 896 96.3500 5629 6171 1 chr4D.!!$F4 542
84 TraesCS6D01G331500 chr4D 67958465 67959012 547 True 891.000000 891 96.1680 5629 6171 1 chr4D.!!$R1 542

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
881 904 0.237498 GTGCTAACGCTTCCGCTTTT 59.763 50.000 0.0 0.0 38.22 2.27 F
2127 2184 0.611896 TCATCGCCCTGTGTGAGAGA 60.612 55.000 0.0 0.0 36.80 3.10 F
2735 2805 0.606673 GGTCTCAACCTGCCTTGTCC 60.607 60.000 0.0 0.0 42.80 4.02 F
2797 2896 1.145900 TCCTTTCAGCCCCCAATCCA 61.146 55.000 0.0 0.0 0.00 3.41 F
4085 4358 1.219124 CCAGATGTGTCCCAGGTCG 59.781 63.158 0.0 0.0 0.00 4.79 F
4870 5553 0.411848 GGGGGAAAATGGGGAAGACA 59.588 55.000 0.0 0.0 0.00 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2735 2805 1.026718 GTGGATCTTTGTGGCGGAGG 61.027 60.000 0.00 0.00 0.00 4.30 R
3591 3763 0.738975 GCCTCCGGAAAATGGCTAAC 59.261 55.000 21.95 0.00 41.92 2.34 R
4228 4501 1.279271 GTCTCCTTGCAGCCTCCTTTA 59.721 52.381 0.00 0.00 0.00 1.85 R
4625 5305 2.179547 CCCTTACGCATGCATCGCA 61.180 57.895 19.57 5.06 44.86 5.10 R
5579 6313 2.225467 GAACCTCTGCTAATGATGCCC 58.775 52.381 0.00 0.00 0.00 5.36 R
6566 7442 0.036306 ACGATGAACCACCAAGGGAC 59.964 55.000 0.00 0.00 43.89 4.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 28 1.094785 CCAGGTTCCGCTATTGGTTG 58.905 55.000 0.00 0.00 0.00 3.77
103 105 3.366724 CGCACGCTTAAAGTAAGATGACA 59.633 43.478 0.00 0.00 38.02 3.58
140 143 7.753132 TGAGTTTTGTGTTTTGATGTACTGAAC 59.247 33.333 0.00 0.00 0.00 3.18
214 217 5.575957 TGGTTGAGACGTAAAGATCGATAC 58.424 41.667 0.00 0.00 0.00 2.24
429 443 1.996291 CCCCCTTTTTCCTTCTCCTCT 59.004 52.381 0.00 0.00 0.00 3.69
564 580 2.980548 TGCTCCTTTATATACGGGGGT 58.019 47.619 0.56 0.00 0.00 4.95
881 904 0.237498 GTGCTAACGCTTCCGCTTTT 59.763 50.000 0.00 0.00 38.22 2.27
902 925 2.291735 TGGTCTACGAGGGTACATGGAA 60.292 50.000 0.00 0.00 0.00 3.53
1029 1052 1.590147 CACTGACTACCCACGGACC 59.410 63.158 0.00 0.00 0.00 4.46
1031 1054 1.975407 CTGACTACCCACGGACCGT 60.975 63.158 15.37 15.37 42.36 4.83
1045 1068 4.680237 CCGTGCCACTGAAGCGGA 62.680 66.667 0.00 0.00 44.57 5.54
1333 1357 1.569030 ATCTGCCCCATGACAGTGCT 61.569 55.000 0.00 0.00 35.37 4.40
1381 1405 0.901580 ACCCGACGGTGGTAGATGTT 60.902 55.000 13.94 0.00 42.48 2.71
1392 1416 4.691216 GGTGGTAGATGTTGAACTGAAGAC 59.309 45.833 0.00 0.00 0.00 3.01
1393 1417 4.386049 GTGGTAGATGTTGAACTGAAGACG 59.614 45.833 0.00 0.00 0.00 4.18
1394 1418 3.927142 GGTAGATGTTGAACTGAAGACGG 59.073 47.826 0.00 0.00 0.00 4.79
1395 1419 4.321750 GGTAGATGTTGAACTGAAGACGGA 60.322 45.833 0.00 0.00 0.00 4.69
1396 1420 4.336889 AGATGTTGAACTGAAGACGGAA 57.663 40.909 0.00 0.00 0.00 4.30
1397 1421 4.899502 AGATGTTGAACTGAAGACGGAAT 58.100 39.130 0.00 0.00 0.00 3.01
1398 1422 5.308825 AGATGTTGAACTGAAGACGGAATT 58.691 37.500 0.00 0.00 0.00 2.17
1399 1423 4.811555 TGTTGAACTGAAGACGGAATTG 57.188 40.909 0.00 0.00 0.00 2.32
1400 1424 4.447290 TGTTGAACTGAAGACGGAATTGA 58.553 39.130 0.00 0.00 0.00 2.57
1401 1425 4.878971 TGTTGAACTGAAGACGGAATTGAA 59.121 37.500 0.00 0.00 0.00 2.69
1402 1426 5.007626 TGTTGAACTGAAGACGGAATTGAAG 59.992 40.000 0.00 0.00 0.00 3.02
1403 1427 4.956085 TGAACTGAAGACGGAATTGAAGA 58.044 39.130 0.00 0.00 0.00 2.87
1404 1428 5.364778 TGAACTGAAGACGGAATTGAAGAA 58.635 37.500 0.00 0.00 0.00 2.52
1405 1429 5.466728 TGAACTGAAGACGGAATTGAAGAAG 59.533 40.000 0.00 0.00 0.00 2.85
1406 1430 5.215252 ACTGAAGACGGAATTGAAGAAGA 57.785 39.130 0.00 0.00 0.00 2.87
1407 1431 5.799213 ACTGAAGACGGAATTGAAGAAGAT 58.201 37.500 0.00 0.00 0.00 2.40
1408 1432 5.641209 ACTGAAGACGGAATTGAAGAAGATG 59.359 40.000 0.00 0.00 0.00 2.90
1409 1433 5.793817 TGAAGACGGAATTGAAGAAGATGA 58.206 37.500 0.00 0.00 0.00 2.92
1410 1434 6.230472 TGAAGACGGAATTGAAGAAGATGAA 58.770 36.000 0.00 0.00 0.00 2.57
1411 1435 6.147821 TGAAGACGGAATTGAAGAAGATGAAC 59.852 38.462 0.00 0.00 0.00 3.18
1412 1436 5.551233 AGACGGAATTGAAGAAGATGAACA 58.449 37.500 0.00 0.00 0.00 3.18
1413 1437 5.997746 AGACGGAATTGAAGAAGATGAACAA 59.002 36.000 0.00 0.00 0.00 2.83
1414 1438 6.148480 AGACGGAATTGAAGAAGATGAACAAG 59.852 38.462 0.00 0.00 0.00 3.16
1415 1439 5.997746 ACGGAATTGAAGAAGATGAACAAGA 59.002 36.000 0.00 0.00 0.00 3.02
1416 1440 6.486657 ACGGAATTGAAGAAGATGAACAAGAA 59.513 34.615 0.00 0.00 0.00 2.52
1417 1441 6.798959 CGGAATTGAAGAAGATGAACAAGAAC 59.201 38.462 0.00 0.00 0.00 3.01
1599 1629 3.067320 TGCTCGATCATAGACAAGTCAGG 59.933 47.826 2.72 0.00 0.00 3.86
1623 1653 6.058183 GGGAAGCAACAATATCTGAGTACAT 58.942 40.000 0.00 0.00 0.00 2.29
1673 1708 1.933853 GCTAGCACAAACTGGGATACG 59.066 52.381 10.63 0.00 37.60 3.06
1735 1770 3.610619 TACTCCTGGTCGTCGGCGA 62.611 63.158 8.66 8.66 45.79 5.54
1754 1789 1.516386 CGGCCTGCACGTAGTAGTG 60.516 63.158 0.00 0.00 41.61 2.74
1889 1935 4.253685 CAACCGTGAGTACTCATCCAAAT 58.746 43.478 27.54 10.30 42.18 2.32
2127 2184 0.611896 TCATCGCCCTGTGTGAGAGA 60.612 55.000 0.00 0.00 36.80 3.10
2485 2545 0.980231 AGCAGACCTAGCCTCCCTTG 60.980 60.000 0.00 0.00 0.00 3.61
2504 2570 2.047061 TGTACAAGAGCAGGTGTTCCT 58.953 47.619 0.00 0.00 46.37 3.36
2735 2805 0.606673 GGTCTCAACCTGCCTTGTCC 60.607 60.000 0.00 0.00 42.80 4.02
2797 2896 1.145900 TCCTTTCAGCCCCCAATCCA 61.146 55.000 0.00 0.00 0.00 3.41
3084 3190 4.870426 GCTACACTACTCTAATGCAAGCAA 59.130 41.667 0.00 0.00 0.00 3.91
3487 3648 8.560374 GTTCTGAGCAACTTTTATGTAGAAAGT 58.440 33.333 0.00 0.00 46.27 2.66
3589 3761 4.103311 AGAAGCCCTCAGTTTCTAAACACT 59.897 41.667 8.21 0.00 43.51 3.55
3591 3763 5.153950 AGCCCTCAGTTTCTAAACACTAG 57.846 43.478 8.21 0.00 41.30 2.57
4085 4358 1.219124 CCAGATGTGTCCCAGGTCG 59.781 63.158 0.00 0.00 0.00 4.79
4152 4425 4.129737 GTAGGCGGCTGCACGAGA 62.130 66.667 23.55 0.00 45.35 4.04
4153 4426 4.129737 TAGGCGGCTGCACGAGAC 62.130 66.667 23.55 0.00 45.35 3.36
4288 4561 1.370900 GCAGCAAAAGCTGTGTCGG 60.371 57.895 17.58 0.00 39.75 4.79
4289 4562 1.370900 CAGCAAAAGCTGTGTCGGC 60.371 57.895 9.20 0.00 35.73 5.54
4569 5249 4.436998 GACGAGGTGCGGGTGAGG 62.437 72.222 0.00 0.00 46.49 3.86
4625 5305 4.796231 CGAACAGGCGCCGCTACT 62.796 66.667 23.20 4.86 0.00 2.57
4668 5351 2.361230 GGGGAAAAGACCGGCAGG 60.361 66.667 0.00 0.00 45.13 4.85
4685 5368 1.556911 CAGGTCACTAGGAAGGCACAT 59.443 52.381 0.00 0.00 0.00 3.21
4858 5541 1.486145 GGAGTCCGTTGAGGGGGAAA 61.486 60.000 0.00 0.00 41.52 3.13
4866 5549 1.171592 TTGAGGGGGAAAATGGGGAA 58.828 50.000 0.00 0.00 0.00 3.97
4867 5550 0.709992 TGAGGGGGAAAATGGGGAAG 59.290 55.000 0.00 0.00 0.00 3.46
4868 5551 1.007607 GAGGGGGAAAATGGGGAAGA 58.992 55.000 0.00 0.00 0.00 2.87
4869 5552 0.710588 AGGGGGAAAATGGGGAAGAC 59.289 55.000 0.00 0.00 0.00 3.01
4870 5553 0.411848 GGGGGAAAATGGGGAAGACA 59.588 55.000 0.00 0.00 0.00 3.41
4871 5554 1.619704 GGGGGAAAATGGGGAAGACAG 60.620 57.143 0.00 0.00 0.00 3.51
4872 5555 1.619704 GGGGAAAATGGGGAAGACAGG 60.620 57.143 0.00 0.00 0.00 4.00
4873 5556 1.619704 GGGAAAATGGGGAAGACAGGG 60.620 57.143 0.00 0.00 0.00 4.45
4874 5557 1.357761 GGAAAATGGGGAAGACAGGGA 59.642 52.381 0.00 0.00 0.00 4.20
4875 5558 2.225267 GGAAAATGGGGAAGACAGGGAA 60.225 50.000 0.00 0.00 0.00 3.97
4887 5570 2.042843 AGGGAAGACGGCGGAGAT 60.043 61.111 13.24 0.00 0.00 2.75
5304 6033 3.630769 TCACTGGTTATACCTCTGCTACG 59.369 47.826 0.00 0.00 39.58 3.51
5436 6168 6.869315 TTATGAAAATGTGGTTTCTCGACA 57.131 33.333 0.00 0.00 38.17 4.35
5472 6204 6.670233 TGATTTATTTGTCACCGTTTGTACC 58.330 36.000 0.00 0.00 0.00 3.34
5579 6313 0.318107 AACAGTAACCGACGTGACCG 60.318 55.000 0.00 0.00 40.83 4.79
5658 6392 3.750130 GCAGCTGATTGAGTTGAAGAAGA 59.250 43.478 20.43 0.00 34.91 2.87
5666 6400 7.651808 TGATTGAGTTGAAGAAGAAATCCAAC 58.348 34.615 0.00 0.00 37.84 3.77
5963 6702 4.202212 TGACAGTAAGCAGTACTTGAGCAA 60.202 41.667 6.47 0.00 41.37 3.91
6007 6746 5.480642 TCATCTCTTCTCTCTTGCACTTT 57.519 39.130 0.00 0.00 0.00 2.66
6111 6854 3.635591 CCCACAAAGGATAAATGAGGCT 58.364 45.455 0.00 0.00 41.22 4.58
6456 7332 6.418819 CACTTTTGACTAAAGCCAAACATCTG 59.581 38.462 8.98 0.00 45.87 2.90
6457 7333 4.503741 TTGACTAAAGCCAAACATCTGC 57.496 40.909 0.00 0.00 0.00 4.26
6458 7334 2.819608 TGACTAAAGCCAAACATCTGCC 59.180 45.455 0.00 0.00 0.00 4.85
6459 7335 3.084786 GACTAAAGCCAAACATCTGCCT 58.915 45.455 0.00 0.00 0.00 4.75
6460 7336 3.084786 ACTAAAGCCAAACATCTGCCTC 58.915 45.455 0.00 0.00 0.00 4.70
6461 7337 0.883833 AAAGCCAAACATCTGCCTCG 59.116 50.000 0.00 0.00 0.00 4.63
6462 7338 0.036732 AAGCCAAACATCTGCCTCGA 59.963 50.000 0.00 0.00 0.00 4.04
6463 7339 0.036732 AGCCAAACATCTGCCTCGAA 59.963 50.000 0.00 0.00 0.00 3.71
6464 7340 0.449388 GCCAAACATCTGCCTCGAAG 59.551 55.000 0.00 0.00 0.00 3.79
6465 7341 0.449388 CCAAACATCTGCCTCGAAGC 59.551 55.000 0.00 0.00 0.00 3.86
6466 7342 1.446907 CAAACATCTGCCTCGAAGCT 58.553 50.000 7.65 0.00 0.00 3.74
6467 7343 1.396301 CAAACATCTGCCTCGAAGCTC 59.604 52.381 7.65 0.00 0.00 4.09
6468 7344 0.610174 AACATCTGCCTCGAAGCTCA 59.390 50.000 7.65 0.00 0.00 4.26
6469 7345 0.108424 ACATCTGCCTCGAAGCTCAC 60.108 55.000 7.65 0.00 0.00 3.51
6470 7346 0.108472 CATCTGCCTCGAAGCTCACA 60.108 55.000 7.65 0.00 0.00 3.58
6471 7347 0.610174 ATCTGCCTCGAAGCTCACAA 59.390 50.000 7.65 0.00 0.00 3.33
6472 7348 0.037882 TCTGCCTCGAAGCTCACAAG 60.038 55.000 7.65 0.00 0.00 3.16
6473 7349 0.037882 CTGCCTCGAAGCTCACAAGA 60.038 55.000 7.65 0.00 0.00 3.02
6474 7350 0.610174 TGCCTCGAAGCTCACAAGAT 59.390 50.000 7.65 0.00 0.00 2.40
6475 7351 1.285578 GCCTCGAAGCTCACAAGATC 58.714 55.000 0.00 0.00 0.00 2.75
6476 7352 1.404717 GCCTCGAAGCTCACAAGATCA 60.405 52.381 0.00 0.00 0.00 2.92
6477 7353 2.538437 CCTCGAAGCTCACAAGATCAG 58.462 52.381 0.00 0.00 0.00 2.90
6478 7354 1.925847 CTCGAAGCTCACAAGATCAGC 59.074 52.381 0.00 0.00 0.00 4.26
6479 7355 0.644331 CGAAGCTCACAAGATCAGCG 59.356 55.000 0.00 0.00 38.26 5.18
6480 7356 1.719600 GAAGCTCACAAGATCAGCGT 58.280 50.000 0.00 0.00 38.26 5.07
6481 7357 2.072298 GAAGCTCACAAGATCAGCGTT 58.928 47.619 0.00 0.00 38.26 4.84
6482 7358 3.254060 GAAGCTCACAAGATCAGCGTTA 58.746 45.455 0.00 0.00 38.26 3.18
6483 7359 2.611518 AGCTCACAAGATCAGCGTTAC 58.388 47.619 0.00 0.00 38.26 2.50
6484 7360 1.321743 GCTCACAAGATCAGCGTTACG 59.678 52.381 0.00 0.00 0.00 3.18
6507 7383 5.821204 GCACATATGCGTTAAATTCTTCCT 58.179 37.500 1.58 0.00 43.33 3.36
6508 7384 6.265577 GCACATATGCGTTAAATTCTTCCTT 58.734 36.000 1.58 0.00 43.33 3.36
6509 7385 6.197096 GCACATATGCGTTAAATTCTTCCTTG 59.803 38.462 1.58 0.00 43.33 3.61
6510 7386 7.471721 CACATATGCGTTAAATTCTTCCTTGA 58.528 34.615 1.58 0.00 0.00 3.02
6511 7387 8.131100 CACATATGCGTTAAATTCTTCCTTGAT 58.869 33.333 1.58 0.00 0.00 2.57
6512 7388 8.686334 ACATATGCGTTAAATTCTTCCTTGATT 58.314 29.630 1.58 0.00 0.00 2.57
6513 7389 9.173939 CATATGCGTTAAATTCTTCCTTGATTC 57.826 33.333 0.00 0.00 0.00 2.52
6514 7390 5.949735 TGCGTTAAATTCTTCCTTGATTCC 58.050 37.500 0.00 0.00 0.00 3.01
6515 7391 5.710099 TGCGTTAAATTCTTCCTTGATTCCT 59.290 36.000 0.00 0.00 0.00 3.36
6516 7392 6.030228 GCGTTAAATTCTTCCTTGATTCCTG 58.970 40.000 0.00 0.00 0.00 3.86
6517 7393 6.030228 CGTTAAATTCTTCCTTGATTCCTGC 58.970 40.000 0.00 0.00 0.00 4.85
6518 7394 6.127897 CGTTAAATTCTTCCTTGATTCCTGCT 60.128 38.462 0.00 0.00 0.00 4.24
6519 7395 5.911378 AAATTCTTCCTTGATTCCTGCTC 57.089 39.130 0.00 0.00 0.00 4.26
6520 7396 2.680312 TCTTCCTTGATTCCTGCTCG 57.320 50.000 0.00 0.00 0.00 5.03
6521 7397 2.179427 TCTTCCTTGATTCCTGCTCGA 58.821 47.619 0.00 0.00 0.00 4.04
6522 7398 2.768527 TCTTCCTTGATTCCTGCTCGAT 59.231 45.455 0.00 0.00 0.00 3.59
6523 7399 2.898729 TCCTTGATTCCTGCTCGATC 57.101 50.000 0.00 0.00 0.00 3.69
6524 7400 1.414181 TCCTTGATTCCTGCTCGATCC 59.586 52.381 0.00 0.00 0.00 3.36
6525 7401 1.139654 CCTTGATTCCTGCTCGATCCA 59.860 52.381 0.00 0.00 0.00 3.41
6526 7402 2.224475 CCTTGATTCCTGCTCGATCCAT 60.224 50.000 0.00 0.00 0.00 3.41
6527 7403 2.538512 TGATTCCTGCTCGATCCATG 57.461 50.000 0.00 0.00 0.00 3.66
6528 7404 2.041701 TGATTCCTGCTCGATCCATGA 58.958 47.619 0.00 0.00 0.00 3.07
6529 7405 2.435437 TGATTCCTGCTCGATCCATGAA 59.565 45.455 0.00 6.46 0.00 2.57
6530 7406 2.609427 TTCCTGCTCGATCCATGAAG 57.391 50.000 0.00 0.00 0.00 3.02
6531 7407 1.489481 TCCTGCTCGATCCATGAAGT 58.511 50.000 0.00 0.00 0.00 3.01
6532 7408 1.410517 TCCTGCTCGATCCATGAAGTC 59.589 52.381 0.00 0.00 0.00 3.01
6533 7409 1.539929 CCTGCTCGATCCATGAAGTCC 60.540 57.143 0.00 0.00 0.00 3.85
6534 7410 1.411977 CTGCTCGATCCATGAAGTCCT 59.588 52.381 0.00 0.00 0.00 3.85
6535 7411 1.410517 TGCTCGATCCATGAAGTCCTC 59.589 52.381 0.00 0.00 0.00 3.71
6536 7412 1.686052 GCTCGATCCATGAAGTCCTCT 59.314 52.381 0.00 0.00 0.00 3.69
6537 7413 2.545532 GCTCGATCCATGAAGTCCTCTG 60.546 54.545 0.00 0.00 0.00 3.35
6538 7414 2.954989 CTCGATCCATGAAGTCCTCTGA 59.045 50.000 0.00 0.00 0.00 3.27
6539 7415 3.365472 TCGATCCATGAAGTCCTCTGAA 58.635 45.455 0.00 0.00 0.00 3.02
6540 7416 3.382865 TCGATCCATGAAGTCCTCTGAAG 59.617 47.826 0.00 0.00 0.00 3.02
6541 7417 3.492309 CGATCCATGAAGTCCTCTGAAGG 60.492 52.174 0.00 0.00 44.89 3.46
6542 7418 1.556911 TCCATGAAGTCCTCTGAAGGC 59.443 52.381 0.00 0.00 43.02 4.35
6543 7419 1.407989 CCATGAAGTCCTCTGAAGGCC 60.408 57.143 0.00 0.00 43.02 5.19
6544 7420 1.280133 CATGAAGTCCTCTGAAGGCCA 59.720 52.381 5.01 0.00 43.02 5.36
6545 7421 1.661463 TGAAGTCCTCTGAAGGCCAT 58.339 50.000 5.01 0.00 43.02 4.40
6546 7422 1.988107 TGAAGTCCTCTGAAGGCCATT 59.012 47.619 5.01 0.00 43.02 3.16
6547 7423 2.026822 TGAAGTCCTCTGAAGGCCATTC 60.027 50.000 5.01 6.76 43.02 2.67
6548 7424 1.661463 AGTCCTCTGAAGGCCATTCA 58.339 50.000 5.01 11.32 45.79 2.57
6549 7425 1.280421 AGTCCTCTGAAGGCCATTCAC 59.720 52.381 5.01 0.39 43.09 3.18
6550 7426 1.003580 GTCCTCTGAAGGCCATTCACA 59.996 52.381 5.01 0.00 43.09 3.58
6551 7427 1.704628 TCCTCTGAAGGCCATTCACAA 59.295 47.619 5.01 0.97 43.09 3.33
6552 7428 2.089980 CCTCTGAAGGCCATTCACAAG 58.910 52.381 5.01 9.80 43.09 3.16
6553 7429 1.471684 CTCTGAAGGCCATTCACAAGC 59.528 52.381 5.01 0.00 43.09 4.01
6554 7430 0.529378 CTGAAGGCCATTCACAAGCC 59.471 55.000 5.01 0.00 43.09 4.35
6557 7433 4.133796 GGCCATTCACAAGCCCGC 62.134 66.667 0.00 0.00 41.00 6.13
6558 7434 3.372730 GCCATTCACAAGCCCGCA 61.373 61.111 0.00 0.00 0.00 5.69
6559 7435 2.568090 CCATTCACAAGCCCGCAC 59.432 61.111 0.00 0.00 0.00 5.34
6560 7436 1.973281 CCATTCACAAGCCCGCACT 60.973 57.895 0.00 0.00 0.00 4.40
6561 7437 1.526575 CCATTCACAAGCCCGCACTT 61.527 55.000 0.00 0.00 0.00 3.16
6573 7449 3.257933 GCACTTGAGCGTCCCTTG 58.742 61.111 0.00 0.00 0.00 3.61
6574 7450 2.328099 GCACTTGAGCGTCCCTTGG 61.328 63.158 0.00 0.00 0.00 3.61
6575 7451 1.071471 CACTTGAGCGTCCCTTGGT 59.929 57.895 0.00 0.00 0.00 3.67
6576 7452 1.071471 ACTTGAGCGTCCCTTGGTG 59.929 57.895 0.00 0.00 0.00 4.17
6577 7453 1.672356 CTTGAGCGTCCCTTGGTGG 60.672 63.158 0.00 0.00 0.00 4.61
6578 7454 2.397413 CTTGAGCGTCCCTTGGTGGT 62.397 60.000 0.00 0.00 0.00 4.16
6579 7455 1.990160 TTGAGCGTCCCTTGGTGGTT 61.990 55.000 0.00 0.00 0.00 3.67
6580 7456 1.671379 GAGCGTCCCTTGGTGGTTC 60.671 63.158 0.00 0.00 0.00 3.62
6581 7457 2.112297 GCGTCCCTTGGTGGTTCA 59.888 61.111 0.00 0.00 0.00 3.18
6582 7458 1.303317 GCGTCCCTTGGTGGTTCAT 60.303 57.895 0.00 0.00 0.00 2.57
6583 7459 1.305930 GCGTCCCTTGGTGGTTCATC 61.306 60.000 0.00 0.00 0.00 2.92
6584 7460 1.019278 CGTCCCTTGGTGGTTCATCG 61.019 60.000 0.00 0.00 0.00 3.84
6585 7461 0.036306 GTCCCTTGGTGGTTCATCGT 59.964 55.000 0.00 0.00 0.00 3.73
6586 7462 0.323629 TCCCTTGGTGGTTCATCGTC 59.676 55.000 0.00 0.00 0.00 4.20
6587 7463 1.019278 CCCTTGGTGGTTCATCGTCG 61.019 60.000 0.00 0.00 0.00 5.12
6588 7464 1.019278 CCTTGGTGGTTCATCGTCGG 61.019 60.000 0.00 0.00 0.00 4.79
6589 7465 1.635663 CTTGGTGGTTCATCGTCGGC 61.636 60.000 0.00 0.00 0.00 5.54
6590 7466 2.047655 GGTGGTTCATCGTCGGCA 60.048 61.111 0.00 0.00 0.00 5.69
6591 7467 1.449601 GGTGGTTCATCGTCGGCAT 60.450 57.895 0.00 0.00 0.00 4.40
6592 7468 1.429148 GGTGGTTCATCGTCGGCATC 61.429 60.000 0.00 0.00 0.00 3.91
6593 7469 1.518352 TGGTTCATCGTCGGCATCG 60.518 57.895 0.00 0.00 37.82 3.84
6594 7470 2.621000 GTTCATCGTCGGCATCGC 59.379 61.111 0.00 0.00 36.13 4.58
6595 7471 2.954346 TTCATCGTCGGCATCGCG 60.954 61.111 0.00 0.00 37.30 5.87
6598 7474 4.950062 ATCGTCGGCATCGCGCAT 62.950 61.111 8.75 0.00 45.17 4.73
6600 7476 4.925307 CGTCGGCATCGCGCATTG 62.925 66.667 8.75 5.04 45.17 2.82
6612 7488 3.512516 GCATTGCGAGCCTGGGTC 61.513 66.667 15.80 15.80 0.00 4.46
6613 7489 2.825836 CATTGCGAGCCTGGGTCC 60.826 66.667 19.47 12.74 0.00 4.46
6614 7490 3.011517 ATTGCGAGCCTGGGTCCT 61.012 61.111 19.47 0.00 0.00 3.85
6615 7491 2.606587 ATTGCGAGCCTGGGTCCTT 61.607 57.895 19.47 0.01 0.00 3.36
6616 7492 2.543067 ATTGCGAGCCTGGGTCCTTC 62.543 60.000 19.47 9.83 0.00 3.46
6617 7493 4.475135 GCGAGCCTGGGTCCTTCC 62.475 72.222 19.47 2.97 0.00 3.46
6618 7494 2.685380 CGAGCCTGGGTCCTTCCT 60.685 66.667 19.47 0.00 36.25 3.36
6619 7495 2.294078 CGAGCCTGGGTCCTTCCTT 61.294 63.158 19.47 0.00 36.25 3.36
6620 7496 1.604915 GAGCCTGGGTCCTTCCTTC 59.395 63.158 14.92 0.00 36.25 3.46
6621 7497 1.916206 GAGCCTGGGTCCTTCCTTCC 61.916 65.000 14.92 0.00 36.25 3.46
6622 7498 1.925972 GCCTGGGTCCTTCCTTCCT 60.926 63.158 0.00 0.00 36.25 3.36
6623 7499 1.501654 GCCTGGGTCCTTCCTTCCTT 61.502 60.000 0.00 0.00 36.25 3.36
6624 7500 0.329596 CCTGGGTCCTTCCTTCCTTG 59.670 60.000 0.00 0.00 36.25 3.61
6625 7501 1.362224 CTGGGTCCTTCCTTCCTTGA 58.638 55.000 0.00 0.00 36.25 3.02
6626 7502 1.705186 CTGGGTCCTTCCTTCCTTGAA 59.295 52.381 0.00 0.00 36.25 2.69
6627 7503 1.705186 TGGGTCCTTCCTTCCTTGAAG 59.295 52.381 0.00 0.00 39.17 3.02
6653 7529 6.020971 CCACCTTGGTACATTTTCCTAAAC 57.979 41.667 0.00 0.00 39.30 2.01
6654 7530 5.536916 CCACCTTGGTACATTTTCCTAAACA 59.463 40.000 0.00 0.00 39.30 2.83
6655 7531 6.210584 CCACCTTGGTACATTTTCCTAAACAT 59.789 38.462 0.00 0.00 39.30 2.71
6656 7532 7.090173 CACCTTGGTACATTTTCCTAAACATG 58.910 38.462 0.00 0.00 39.30 3.21
6657 7533 6.780522 ACCTTGGTACATTTTCCTAAACATGT 59.219 34.615 0.00 0.00 39.30 3.21
6658 7534 7.289084 ACCTTGGTACATTTTCCTAAACATGTT 59.711 33.333 4.92 4.92 39.30 2.71
6659 7535 8.147704 CCTTGGTACATTTTCCTAAACATGTTT 58.852 33.333 25.99 25.99 39.30 2.83
6660 7536 9.191995 CTTGGTACATTTTCCTAAACATGTTTC 57.808 33.333 26.46 8.70 39.30 2.78
6661 7537 8.472007 TGGTACATTTTCCTAAACATGTTTCT 57.528 30.769 26.46 7.57 34.23 2.52
6662 7538 8.919145 TGGTACATTTTCCTAAACATGTTTCTT 58.081 29.630 26.46 6.80 34.23 2.52
6663 7539 9.406828 GGTACATTTTCCTAAACATGTTTCTTC 57.593 33.333 26.46 6.18 34.23 2.87
6664 7540 9.406828 GTACATTTTCCTAAACATGTTTCTTCC 57.593 33.333 26.46 1.50 34.23 3.46
6665 7541 8.250143 ACATTTTCCTAAACATGTTTCTTCCT 57.750 30.769 26.46 5.25 34.23 3.36
6666 7542 8.360390 ACATTTTCCTAAACATGTTTCTTCCTC 58.640 33.333 26.46 0.00 34.23 3.71
6667 7543 8.579863 CATTTTCCTAAACATGTTTCTTCCTCT 58.420 33.333 26.46 3.73 34.23 3.69
6668 7544 7.510549 TTTCCTAAACATGTTTCTTCCTCTG 57.489 36.000 26.46 8.16 34.23 3.35
6669 7545 6.433847 TCCTAAACATGTTTCTTCCTCTGA 57.566 37.500 26.46 10.09 34.23 3.27
6670 7546 6.837312 TCCTAAACATGTTTCTTCCTCTGAA 58.163 36.000 26.46 5.11 34.23 3.02
6671 7547 7.287061 TCCTAAACATGTTTCTTCCTCTGAAA 58.713 34.615 26.46 4.61 34.23 2.69
6672 7548 7.777910 TCCTAAACATGTTTCTTCCTCTGAAAA 59.222 33.333 26.46 4.41 35.54 2.29
6673 7549 8.579863 CCTAAACATGTTTCTTCCTCTGAAAAT 58.420 33.333 26.46 0.35 35.54 1.82
6674 7550 9.971922 CTAAACATGTTTCTTCCTCTGAAAATT 57.028 29.630 26.46 0.00 35.54 1.82
6676 7552 9.671279 AAACATGTTTCTTCCTCTGAAAATTTT 57.329 25.926 18.13 2.28 35.54 1.82
6678 7554 9.971922 ACATGTTTCTTCCTCTGAAAATTTTAG 57.028 29.630 2.75 0.00 35.54 1.85
6679 7555 8.919661 CATGTTTCTTCCTCTGAAAATTTTAGC 58.080 33.333 2.75 0.00 35.54 3.09
6680 7556 8.006298 TGTTTCTTCCTCTGAAAATTTTAGCA 57.994 30.769 2.75 0.00 35.54 3.49
6681 7557 8.474025 TGTTTCTTCCTCTGAAAATTTTAGCAA 58.526 29.630 2.75 0.00 35.54 3.91
6682 7558 8.755941 GTTTCTTCCTCTGAAAATTTTAGCAAC 58.244 33.333 2.75 0.00 35.54 4.17
6683 7559 7.823745 TCTTCCTCTGAAAATTTTAGCAACT 57.176 32.000 2.75 0.00 0.00 3.16
6684 7560 8.237811 TCTTCCTCTGAAAATTTTAGCAACTT 57.762 30.769 2.75 0.00 0.00 2.66
6685 7561 8.352942 TCTTCCTCTGAAAATTTTAGCAACTTC 58.647 33.333 2.75 0.00 0.00 3.01
6686 7562 7.581213 TCCTCTGAAAATTTTAGCAACTTCA 57.419 32.000 2.75 0.00 0.00 3.02
6687 7563 8.006298 TCCTCTGAAAATTTTAGCAACTTCAA 57.994 30.769 2.75 0.00 0.00 2.69
6688 7564 8.474025 TCCTCTGAAAATTTTAGCAACTTCAAA 58.526 29.630 2.75 0.00 0.00 2.69
6689 7565 9.264719 CCTCTGAAAATTTTAGCAACTTCAAAT 57.735 29.630 2.75 0.00 0.00 2.32
6701 7577 7.759489 AGCAACTTCAAATATAAGTGAACCA 57.241 32.000 0.00 0.00 37.26 3.67
6702 7578 8.177119 AGCAACTTCAAATATAAGTGAACCAA 57.823 30.769 0.00 0.00 37.26 3.67
6703 7579 8.637986 AGCAACTTCAAATATAAGTGAACCAAA 58.362 29.630 0.00 0.00 37.26 3.28
6704 7580 8.699749 GCAACTTCAAATATAAGTGAACCAAAC 58.300 33.333 0.00 0.00 37.26 2.93
6705 7581 9.965824 CAACTTCAAATATAAGTGAACCAAACT 57.034 29.630 0.00 0.00 37.26 2.66
6707 7583 9.349713 ACTTCAAATATAAGTGAACCAAACTCA 57.650 29.630 0.00 0.00 35.87 3.41
6709 7585 9.959749 TTCAAATATAAGTGAACCAAACTCAAC 57.040 29.630 0.00 0.00 0.00 3.18
6710 7586 9.126151 TCAAATATAAGTGAACCAAACTCAACA 57.874 29.630 0.00 0.00 0.00 3.33
6711 7587 9.743057 CAAATATAAGTGAACCAAACTCAACAA 57.257 29.630 0.00 0.00 0.00 2.83
6716 7592 6.966435 AGTGAACCAAACTCAACAAAATTG 57.034 33.333 0.00 0.00 0.00 2.32
6717 7593 6.696411 AGTGAACCAAACTCAACAAAATTGA 58.304 32.000 0.00 0.00 0.00 2.57
6718 7594 7.330262 AGTGAACCAAACTCAACAAAATTGAT 58.670 30.769 0.00 0.00 0.00 2.57
6719 7595 8.474025 AGTGAACCAAACTCAACAAAATTGATA 58.526 29.630 0.00 0.00 0.00 2.15
6720 7596 8.755018 GTGAACCAAACTCAACAAAATTGATAG 58.245 33.333 0.00 0.00 0.00 2.08
6721 7597 7.437862 TGAACCAAACTCAACAAAATTGATAGC 59.562 33.333 0.00 0.00 0.00 2.97
6722 7598 6.815089 ACCAAACTCAACAAAATTGATAGCA 58.185 32.000 0.00 0.00 0.00 3.49
6723 7599 7.271511 ACCAAACTCAACAAAATTGATAGCAA 58.728 30.769 0.00 0.00 38.60 3.91
6724 7600 7.224557 ACCAAACTCAACAAAATTGATAGCAAC 59.775 33.333 0.00 0.00 36.72 4.17
6725 7601 7.439056 CCAAACTCAACAAAATTGATAGCAACT 59.561 33.333 0.00 0.00 36.72 3.16
6726 7602 9.462174 CAAACTCAACAAAATTGATAGCAACTA 57.538 29.630 0.00 0.00 36.72 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 28 1.658673 AGACACGTCTCCGGTCAAC 59.341 57.895 0.00 0.00 37.00 3.18
103 105 9.405587 CAAAACACAAAACTCATAATACCGATT 57.594 29.630 0.00 0.00 0.00 3.34
136 139 0.883833 GGGACTCCGAACTACGTTCA 59.116 55.000 0.00 0.00 42.05 3.18
195 198 6.038936 TCCAATGTATCGATCTTTACGTCTCA 59.961 38.462 0.00 0.00 0.00 3.27
214 217 2.858344 GTCCGAACATAGTCGTCCAATG 59.142 50.000 0.00 0.00 39.43 2.82
301 308 2.509964 CCACTAGGCCCAATTAACTCCT 59.490 50.000 0.00 0.00 0.00 3.69
429 443 1.725182 AGAGGGAAGGAAGGGAGAGAA 59.275 52.381 0.00 0.00 0.00 2.87
564 580 2.023791 TGTGTGTATAGAGGTGCCCCTA 60.024 50.000 0.00 0.00 42.86 3.53
881 904 1.285667 TCCATGTACCCTCGTAGACCA 59.714 52.381 0.00 0.00 0.00 4.02
902 925 1.344763 CAACGAGAGGGGAGAGTGTTT 59.655 52.381 0.00 0.00 0.00 2.83
1029 1052 2.434884 ATCCGCTTCAGTGGCACG 60.435 61.111 12.71 7.55 45.04 5.34
1031 1054 1.375908 GTCATCCGCTTCAGTGGCA 60.376 57.895 1.10 0.00 45.04 4.92
1045 1068 3.702792 TCTTCTCCTCCTTCGAAGTCAT 58.297 45.455 23.03 0.00 36.44 3.06
1381 1405 4.956085 TCTTCAATTCCGTCTTCAGTTCA 58.044 39.130 0.00 0.00 0.00 3.18
1392 1416 6.486253 TCTTGTTCATCTTCTTCAATTCCG 57.514 37.500 0.00 0.00 0.00 4.30
1393 1417 7.880105 AGTTCTTGTTCATCTTCTTCAATTCC 58.120 34.615 0.00 0.00 0.00 3.01
1394 1418 9.741647 AAAGTTCTTGTTCATCTTCTTCAATTC 57.258 29.630 0.00 0.00 0.00 2.17
1395 1419 9.525409 CAAAGTTCTTGTTCATCTTCTTCAATT 57.475 29.630 0.00 0.00 0.00 2.32
1396 1420 8.689972 ACAAAGTTCTTGTTCATCTTCTTCAAT 58.310 29.630 0.00 0.00 0.00 2.57
1397 1421 7.970061 CACAAAGTTCTTGTTCATCTTCTTCAA 59.030 33.333 0.00 0.00 0.00 2.69
1398 1422 7.336679 TCACAAAGTTCTTGTTCATCTTCTTCA 59.663 33.333 0.00 0.00 0.00 3.02
1399 1423 7.641802 GTCACAAAGTTCTTGTTCATCTTCTTC 59.358 37.037 0.00 0.00 0.00 2.87
1400 1424 7.475840 GTCACAAAGTTCTTGTTCATCTTCTT 58.524 34.615 0.00 0.00 0.00 2.52
1401 1425 6.238211 CGTCACAAAGTTCTTGTTCATCTTCT 60.238 38.462 0.00 0.00 0.00 2.85
1402 1426 5.904080 CGTCACAAAGTTCTTGTTCATCTTC 59.096 40.000 0.00 0.00 0.00 2.87
1403 1427 5.730568 GCGTCACAAAGTTCTTGTTCATCTT 60.731 40.000 0.00 0.00 0.00 2.40
1404 1428 4.260784 GCGTCACAAAGTTCTTGTTCATCT 60.261 41.667 0.00 0.00 0.00 2.90
1405 1429 3.968724 GCGTCACAAAGTTCTTGTTCATC 59.031 43.478 0.00 0.00 0.00 2.92
1406 1430 3.243068 GGCGTCACAAAGTTCTTGTTCAT 60.243 43.478 0.00 0.00 0.00 2.57
1407 1431 2.096819 GGCGTCACAAAGTTCTTGTTCA 59.903 45.455 0.00 0.00 0.00 3.18
1408 1432 2.540973 GGGCGTCACAAAGTTCTTGTTC 60.541 50.000 0.00 0.00 0.00 3.18
1409 1433 1.404035 GGGCGTCACAAAGTTCTTGTT 59.596 47.619 0.00 0.00 0.00 2.83
1410 1434 1.021968 GGGCGTCACAAAGTTCTTGT 58.978 50.000 0.00 0.00 0.00 3.16
1411 1435 0.310854 GGGGCGTCACAAAGTTCTTG 59.689 55.000 0.00 0.00 0.00 3.02
1412 1436 1.164041 CGGGGCGTCACAAAGTTCTT 61.164 55.000 0.00 0.00 0.00 2.52
1413 1437 1.597027 CGGGGCGTCACAAAGTTCT 60.597 57.895 0.00 0.00 0.00 3.01
1414 1438 0.953960 ATCGGGGCGTCACAAAGTTC 60.954 55.000 0.00 0.00 0.00 3.01
1415 1439 0.536460 AATCGGGGCGTCACAAAGTT 60.536 50.000 0.00 0.00 0.00 2.66
1416 1440 0.953960 GAATCGGGGCGTCACAAAGT 60.954 55.000 0.00 0.00 0.00 2.66
1417 1441 0.953471 TGAATCGGGGCGTCACAAAG 60.953 55.000 0.00 0.00 0.00 2.77
1470 1496 2.159085 CCCGTGAGTCCCTAATCTTGAC 60.159 54.545 0.00 0.00 0.00 3.18
1599 1629 5.428253 TGTACTCAGATATTGTTGCTTCCC 58.572 41.667 0.00 0.00 0.00 3.97
1673 1708 1.092345 GCCTGTGCCTCTTTCGATCC 61.092 60.000 0.00 0.00 0.00 3.36
1735 1770 1.975407 ACTACTACGTGCAGGCCGT 60.975 57.895 6.26 6.17 42.06 5.68
1763 1798 2.353889 GACGACGACTCCTACTATGCAA 59.646 50.000 0.00 0.00 0.00 4.08
1766 1801 2.467838 TCGACGACGACTCCTACTATG 58.532 52.381 5.75 0.00 43.81 2.23
1767 1802 2.879002 TCGACGACGACTCCTACTAT 57.121 50.000 5.75 0.00 43.81 2.12
1889 1935 3.194755 TGTAGATCCTTGCTTGCGAGTAA 59.805 43.478 4.28 4.28 0.00 2.24
2127 2184 5.103940 AGTGCCAGATATAACCCAGTGATTT 60.104 40.000 0.00 0.00 0.00 2.17
2485 2545 2.417719 CAGGAACACCTGCTCTTGTAC 58.582 52.381 3.31 0.00 43.51 2.90
2735 2805 1.026718 GTGGATCTTTGTGGCGGAGG 61.027 60.000 0.00 0.00 0.00 4.30
2797 2896 1.067212 GAGTACCCGCGAGTGATTCAT 59.933 52.381 8.23 0.00 0.00 2.57
3084 3190 7.502226 CCAGATATCGCCTATTCTTCTCTCTAT 59.498 40.741 0.00 0.00 0.00 1.98
3215 3362 9.862149 TTATATTTATTGTTTCTTCCCCCTCTC 57.138 33.333 0.00 0.00 0.00 3.20
3578 3749 8.789762 GGAAAATGGCTAACTAGTGTTTAGAAA 58.210 33.333 0.00 0.00 37.59 2.52
3589 3761 2.420967 GCCTCCGGAAAATGGCTAACTA 60.421 50.000 21.95 0.00 41.92 2.24
3591 3763 0.738975 GCCTCCGGAAAATGGCTAAC 59.261 55.000 21.95 0.00 41.92 2.34
4074 4347 4.980805 GCAACGCGACCTGGGACA 62.981 66.667 15.93 0.00 0.00 4.02
4224 4497 1.986575 CTTGCAGCCTCCTTTAGCGC 61.987 60.000 0.00 0.00 0.00 5.92
4228 4501 1.279271 GTCTCCTTGCAGCCTCCTTTA 59.721 52.381 0.00 0.00 0.00 1.85
4393 4776 4.704833 CACTCACCACCCCGCCTG 62.705 72.222 0.00 0.00 0.00 4.85
4469 5149 4.154347 GCTGCCCTGCTACTCGCT 62.154 66.667 0.00 0.00 40.11 4.93
4569 5249 4.863925 GCTCTGCTCCGGCTCGTC 62.864 72.222 0.00 0.00 39.59 4.20
4625 5305 2.179547 CCCTTACGCATGCATCGCA 61.180 57.895 19.57 5.06 44.86 5.10
4668 5351 3.201290 CATCATGTGCCTTCCTAGTGAC 58.799 50.000 0.00 0.00 0.00 3.67
4685 5368 4.794648 CCTTTCGCCGGGCCATCA 62.795 66.667 14.55 0.00 0.00 3.07
4858 5541 1.636003 GTCTTCCCTGTCTTCCCCATT 59.364 52.381 0.00 0.00 0.00 3.16
4866 5549 3.382832 CCGCCGTCTTCCCTGTCT 61.383 66.667 0.00 0.00 0.00 3.41
4867 5550 3.358076 CTCCGCCGTCTTCCCTGTC 62.358 68.421 0.00 0.00 0.00 3.51
4868 5551 3.382832 CTCCGCCGTCTTCCCTGT 61.383 66.667 0.00 0.00 0.00 4.00
4869 5552 2.427245 ATCTCCGCCGTCTTCCCTG 61.427 63.158 0.00 0.00 0.00 4.45
4870 5553 2.042843 ATCTCCGCCGTCTTCCCT 60.043 61.111 0.00 0.00 0.00 4.20
4871 5554 2.107141 CATCTCCGCCGTCTTCCC 59.893 66.667 0.00 0.00 0.00 3.97
4872 5555 2.107141 CCATCTCCGCCGTCTTCC 59.893 66.667 0.00 0.00 0.00 3.46
4873 5556 2.107141 CCCATCTCCGCCGTCTTC 59.893 66.667 0.00 0.00 0.00 2.87
4874 5557 4.162690 GCCCATCTCCGCCGTCTT 62.163 66.667 0.00 0.00 0.00 3.01
5138 5823 2.238847 CTTGGCCCAGCTACGCTACA 62.239 60.000 0.00 0.00 36.40 2.74
5287 6016 5.048507 CCTTTTCGTAGCAGAGGTATAACC 58.951 45.833 0.00 0.00 38.99 2.85
5288 6017 5.658468 ACCTTTTCGTAGCAGAGGTATAAC 58.342 41.667 0.00 0.00 38.88 1.89
5417 6149 8.020819 TGATTATTGTCGAGAAACCACATTTTC 58.979 33.333 0.00 0.00 35.97 2.29
5579 6313 2.225467 GAACCTCTGCTAATGATGCCC 58.775 52.381 0.00 0.00 0.00 5.36
5658 6392 6.327386 TCCTAAAGCTATCAGGTTGGATTT 57.673 37.500 7.77 0.00 35.89 2.17
5666 6400 8.646900 AGAGAAAGTATTCCTAAAGCTATCAGG 58.353 37.037 0.00 0.00 36.12 3.86
5963 6702 6.957631 TGAACTTGATGTATATCCCTTGTGT 58.042 36.000 0.00 0.00 32.09 3.72
6007 6746 3.553828 ACTCGAGGACAAAAGTTTGGA 57.446 42.857 18.41 0.00 42.34 3.53
6214 7012 5.714806 ACATACGGTGAAGGGAAATCAAATT 59.285 36.000 0.00 0.00 0.00 1.82
6456 7332 1.285578 GATCTTGTGAGCTTCGAGGC 58.714 55.000 12.25 12.25 0.00 4.70
6457 7333 2.538437 CTGATCTTGTGAGCTTCGAGG 58.462 52.381 0.00 0.00 0.00 4.63
6458 7334 1.925847 GCTGATCTTGTGAGCTTCGAG 59.074 52.381 0.00 0.00 0.00 4.04
6459 7335 1.733718 CGCTGATCTTGTGAGCTTCGA 60.734 52.381 0.00 0.00 0.00 3.71
6460 7336 0.644331 CGCTGATCTTGTGAGCTTCG 59.356 55.000 0.00 0.00 0.00 3.79
6461 7337 1.719600 ACGCTGATCTTGTGAGCTTC 58.280 50.000 0.00 0.00 0.00 3.86
6462 7338 2.175878 AACGCTGATCTTGTGAGCTT 57.824 45.000 0.00 0.00 0.00 3.74
6463 7339 2.611518 GTAACGCTGATCTTGTGAGCT 58.388 47.619 0.00 0.00 0.00 4.09
6464 7340 1.321743 CGTAACGCTGATCTTGTGAGC 59.678 52.381 0.00 0.00 0.00 4.26
6485 7361 7.471721 TCAAGGAAGAATTTAACGCATATGTG 58.528 34.615 14.72 14.72 0.00 3.21
6486 7362 7.624360 TCAAGGAAGAATTTAACGCATATGT 57.376 32.000 4.29 0.00 0.00 2.29
6487 7363 9.173939 GAATCAAGGAAGAATTTAACGCATATG 57.826 33.333 0.00 0.00 0.00 1.78
6488 7364 8.352942 GGAATCAAGGAAGAATTTAACGCATAT 58.647 33.333 0.00 0.00 0.00 1.78
6489 7365 7.556275 AGGAATCAAGGAAGAATTTAACGCATA 59.444 33.333 0.00 0.00 0.00 3.14
6490 7366 6.378280 AGGAATCAAGGAAGAATTTAACGCAT 59.622 34.615 0.00 0.00 0.00 4.73
6491 7367 5.710099 AGGAATCAAGGAAGAATTTAACGCA 59.290 36.000 0.00 0.00 0.00 5.24
6492 7368 6.030228 CAGGAATCAAGGAAGAATTTAACGC 58.970 40.000 0.00 0.00 0.00 4.84
6493 7369 6.030228 GCAGGAATCAAGGAAGAATTTAACG 58.970 40.000 0.00 0.00 0.00 3.18
6494 7370 7.163001 AGCAGGAATCAAGGAAGAATTTAAC 57.837 36.000 0.00 0.00 0.00 2.01
6495 7371 6.094048 CGAGCAGGAATCAAGGAAGAATTTAA 59.906 38.462 0.00 0.00 0.00 1.52
6496 7372 5.586243 CGAGCAGGAATCAAGGAAGAATTTA 59.414 40.000 0.00 0.00 0.00 1.40
6497 7373 4.397417 CGAGCAGGAATCAAGGAAGAATTT 59.603 41.667 0.00 0.00 0.00 1.82
6498 7374 3.944015 CGAGCAGGAATCAAGGAAGAATT 59.056 43.478 0.00 0.00 0.00 2.17
6499 7375 3.198635 TCGAGCAGGAATCAAGGAAGAAT 59.801 43.478 0.00 0.00 0.00 2.40
6500 7376 2.567169 TCGAGCAGGAATCAAGGAAGAA 59.433 45.455 0.00 0.00 0.00 2.52
6501 7377 2.179427 TCGAGCAGGAATCAAGGAAGA 58.821 47.619 0.00 0.00 0.00 2.87
6502 7378 2.680312 TCGAGCAGGAATCAAGGAAG 57.320 50.000 0.00 0.00 0.00 3.46
6503 7379 2.158900 GGATCGAGCAGGAATCAAGGAA 60.159 50.000 1.84 0.00 0.00 3.36
6504 7380 1.414181 GGATCGAGCAGGAATCAAGGA 59.586 52.381 1.84 0.00 0.00 3.36
6505 7381 1.139654 TGGATCGAGCAGGAATCAAGG 59.860 52.381 1.84 0.00 0.00 3.61
6506 7382 2.609427 TGGATCGAGCAGGAATCAAG 57.391 50.000 1.84 0.00 0.00 3.02
6507 7383 2.435437 TCATGGATCGAGCAGGAATCAA 59.565 45.455 1.84 0.00 0.00 2.57
6508 7384 2.041701 TCATGGATCGAGCAGGAATCA 58.958 47.619 1.84 0.00 0.00 2.57
6509 7385 2.827800 TCATGGATCGAGCAGGAATC 57.172 50.000 1.84 0.00 0.00 2.52
6510 7386 2.437281 ACTTCATGGATCGAGCAGGAAT 59.563 45.455 1.84 0.00 0.00 3.01
6511 7387 1.833630 ACTTCATGGATCGAGCAGGAA 59.166 47.619 1.84 1.87 0.00 3.36
6512 7388 1.410517 GACTTCATGGATCGAGCAGGA 59.589 52.381 1.84 0.00 0.00 3.86
6513 7389 1.539929 GGACTTCATGGATCGAGCAGG 60.540 57.143 1.84 0.00 0.00 4.85
6514 7390 1.411977 AGGACTTCATGGATCGAGCAG 59.588 52.381 1.84 0.00 0.00 4.24
6515 7391 1.410517 GAGGACTTCATGGATCGAGCA 59.589 52.381 1.84 0.00 0.00 4.26
6516 7392 1.686052 AGAGGACTTCATGGATCGAGC 59.314 52.381 0.00 0.00 0.00 5.03
6517 7393 2.954989 TCAGAGGACTTCATGGATCGAG 59.045 50.000 0.00 0.00 0.00 4.04
6518 7394 3.018423 TCAGAGGACTTCATGGATCGA 57.982 47.619 0.00 0.00 0.00 3.59
6519 7395 3.492309 CCTTCAGAGGACTTCATGGATCG 60.492 52.174 0.00 0.00 46.74 3.69
6520 7396 3.743899 GCCTTCAGAGGACTTCATGGATC 60.744 52.174 0.00 0.00 46.74 3.36
6521 7397 2.172293 GCCTTCAGAGGACTTCATGGAT 59.828 50.000 0.00 0.00 46.74 3.41
6522 7398 1.556911 GCCTTCAGAGGACTTCATGGA 59.443 52.381 0.00 0.00 46.74 3.41
6523 7399 2.035530 GCCTTCAGAGGACTTCATGG 57.964 55.000 0.00 0.00 46.74 3.66
6531 7407 1.361204 TGTGAATGGCCTTCAGAGGA 58.639 50.000 15.31 1.69 46.74 3.71
6532 7408 2.089980 CTTGTGAATGGCCTTCAGAGG 58.910 52.381 15.31 11.86 44.44 3.69
6533 7409 1.471684 GCTTGTGAATGGCCTTCAGAG 59.528 52.381 15.31 15.71 44.44 3.35
6534 7410 1.538047 GCTTGTGAATGGCCTTCAGA 58.462 50.000 15.31 12.44 44.44 3.27
6535 7411 0.529378 GGCTTGTGAATGGCCTTCAG 59.471 55.000 15.31 7.67 44.44 3.02
6536 7412 0.899717 GGGCTTGTGAATGGCCTTCA 60.900 55.000 3.32 8.94 44.70 3.02
6537 7413 1.893062 GGGCTTGTGAATGGCCTTC 59.107 57.895 3.32 6.14 44.70 3.46
6538 7414 1.978617 CGGGCTTGTGAATGGCCTT 60.979 57.895 3.32 0.00 45.35 4.35
6539 7415 2.361610 CGGGCTTGTGAATGGCCT 60.362 61.111 3.32 0.00 45.35 5.19
6540 7416 4.133796 GCGGGCTTGTGAATGGCC 62.134 66.667 0.00 0.00 44.59 5.36
6541 7417 3.372730 TGCGGGCTTGTGAATGGC 61.373 61.111 0.00 0.00 0.00 4.40
6542 7418 1.526575 AAGTGCGGGCTTGTGAATGG 61.527 55.000 0.00 0.00 0.00 3.16
6543 7419 0.387622 CAAGTGCGGGCTTGTGAATG 60.388 55.000 7.16 0.00 40.52 2.67
6544 7420 0.537143 TCAAGTGCGGGCTTGTGAAT 60.537 50.000 12.89 0.00 44.41 2.57
6545 7421 1.153066 TCAAGTGCGGGCTTGTGAA 60.153 52.632 12.89 0.00 44.41 3.18
6546 7422 1.597854 CTCAAGTGCGGGCTTGTGA 60.598 57.895 12.89 0.00 44.41 3.58
6547 7423 2.949106 CTCAAGTGCGGGCTTGTG 59.051 61.111 12.89 8.51 44.41 3.33
6548 7424 2.980233 GCTCAAGTGCGGGCTTGT 60.980 61.111 12.89 0.00 44.41 3.16
6556 7432 2.328099 CCAAGGGACGCTCAAGTGC 61.328 63.158 0.00 0.00 0.00 4.40
6557 7433 1.071471 ACCAAGGGACGCTCAAGTG 59.929 57.895 0.00 0.00 0.00 3.16
6558 7434 1.071471 CACCAAGGGACGCTCAAGT 59.929 57.895 0.00 0.00 0.00 3.16
6559 7435 1.672356 CCACCAAGGGACGCTCAAG 60.672 63.158 0.00 0.00 0.00 3.02
6560 7436 1.990160 AACCACCAAGGGACGCTCAA 61.990 55.000 0.00 0.00 43.89 3.02
6561 7437 2.391724 GAACCACCAAGGGACGCTCA 62.392 60.000 0.00 0.00 43.89 4.26
6562 7438 1.671379 GAACCACCAAGGGACGCTC 60.671 63.158 0.00 0.00 43.89 5.03
6563 7439 1.779061 ATGAACCACCAAGGGACGCT 61.779 55.000 0.00 0.00 43.89 5.07
6564 7440 1.303317 ATGAACCACCAAGGGACGC 60.303 57.895 0.00 0.00 43.89 5.19
6565 7441 1.019278 CGATGAACCACCAAGGGACG 61.019 60.000 0.00 0.00 43.89 4.79
6566 7442 0.036306 ACGATGAACCACCAAGGGAC 59.964 55.000 0.00 0.00 43.89 4.46
6567 7443 0.323629 GACGATGAACCACCAAGGGA 59.676 55.000 0.00 0.00 43.89 4.20
6568 7444 1.019278 CGACGATGAACCACCAAGGG 61.019 60.000 0.00 0.00 43.89 3.95
6569 7445 1.019278 CCGACGATGAACCACCAAGG 61.019 60.000 0.00 0.00 45.67 3.61
6570 7446 1.635663 GCCGACGATGAACCACCAAG 61.636 60.000 0.00 0.00 0.00 3.61
6571 7447 1.669760 GCCGACGATGAACCACCAA 60.670 57.895 0.00 0.00 0.00 3.67
6572 7448 2.047655 GCCGACGATGAACCACCA 60.048 61.111 0.00 0.00 0.00 4.17
6573 7449 1.429148 GATGCCGACGATGAACCACC 61.429 60.000 0.00 0.00 0.00 4.61
6574 7450 1.752501 CGATGCCGACGATGAACCAC 61.753 60.000 0.00 0.00 38.22 4.16
6575 7451 1.518352 CGATGCCGACGATGAACCA 60.518 57.895 0.00 0.00 38.22 3.67
6576 7452 2.871427 GCGATGCCGACGATGAACC 61.871 63.158 0.00 0.00 38.22 3.62
6577 7453 2.621000 GCGATGCCGACGATGAAC 59.379 61.111 0.00 0.00 38.22 3.18
6578 7454 2.954346 CGCGATGCCGACGATGAA 60.954 61.111 0.00 0.00 37.45 2.57
6581 7457 4.950062 ATGCGCGATGCCGACGAT 62.950 61.111 12.10 0.00 45.60 3.73
6583 7459 4.925307 CAATGCGCGATGCCGACG 62.925 66.667 12.10 0.00 45.60 5.12
6595 7471 3.512516 GACCCAGGCTCGCAATGC 61.513 66.667 0.00 0.00 0.00 3.56
6596 7472 2.825836 GGACCCAGGCTCGCAATG 60.826 66.667 0.00 0.00 0.00 2.82
6597 7473 2.543067 GAAGGACCCAGGCTCGCAAT 62.543 60.000 0.00 0.00 0.00 3.56
6598 7474 3.249189 AAGGACCCAGGCTCGCAA 61.249 61.111 0.00 0.00 0.00 4.85
6599 7475 3.706373 GAAGGACCCAGGCTCGCA 61.706 66.667 0.00 0.00 0.00 5.10
6600 7476 4.475135 GGAAGGACCCAGGCTCGC 62.475 72.222 0.00 0.00 0.00 5.03
6601 7477 2.245438 GAAGGAAGGACCCAGGCTCG 62.245 65.000 0.00 0.00 40.05 5.03
6602 7478 1.604915 GAAGGAAGGACCCAGGCTC 59.395 63.158 0.00 0.00 40.05 4.70
6603 7479 1.925972 GGAAGGAAGGACCCAGGCT 60.926 63.158 0.00 0.00 40.05 4.58
6604 7480 1.501654 AAGGAAGGAAGGACCCAGGC 61.502 60.000 0.00 0.00 40.05 4.85
6605 7481 0.329596 CAAGGAAGGAAGGACCCAGG 59.670 60.000 0.00 0.00 40.05 4.45
6606 7482 1.362224 TCAAGGAAGGAAGGACCCAG 58.638 55.000 0.00 0.00 40.05 4.45
6607 7483 1.705186 CTTCAAGGAAGGAAGGACCCA 59.295 52.381 0.00 0.00 38.44 4.51
6608 7484 2.498644 CTTCAAGGAAGGAAGGACCC 57.501 55.000 0.00 0.00 38.44 4.46
6630 7506 5.536916 TGTTTAGGAAAATGTACCAAGGTGG 59.463 40.000 1.07 0.00 45.02 4.61
6631 7507 6.642707 TGTTTAGGAAAATGTACCAAGGTG 57.357 37.500 1.07 0.00 0.00 4.00
6632 7508 6.780522 ACATGTTTAGGAAAATGTACCAAGGT 59.219 34.615 0.00 0.00 0.00 3.50
6633 7509 7.227049 ACATGTTTAGGAAAATGTACCAAGG 57.773 36.000 0.00 0.00 0.00 3.61
6634 7510 9.191995 GAAACATGTTTAGGAAAATGTACCAAG 57.808 33.333 23.33 0.00 32.11 3.61
6635 7511 8.919145 AGAAACATGTTTAGGAAAATGTACCAA 58.081 29.630 23.33 0.00 32.11 3.67
6636 7512 8.472007 AGAAACATGTTTAGGAAAATGTACCA 57.528 30.769 23.33 0.00 32.11 3.25
6637 7513 9.406828 GAAGAAACATGTTTAGGAAAATGTACC 57.593 33.333 23.33 6.74 32.11 3.34
6638 7514 9.406828 GGAAGAAACATGTTTAGGAAAATGTAC 57.593 33.333 23.33 6.93 32.11 2.90
6639 7515 9.362151 AGGAAGAAACATGTTTAGGAAAATGTA 57.638 29.630 23.33 0.00 32.11 2.29
6640 7516 8.250143 AGGAAGAAACATGTTTAGGAAAATGT 57.750 30.769 23.33 0.00 32.11 2.71
6641 7517 8.579863 AGAGGAAGAAACATGTTTAGGAAAATG 58.420 33.333 23.33 0.00 32.11 2.32
6642 7518 8.579863 CAGAGGAAGAAACATGTTTAGGAAAAT 58.420 33.333 23.33 7.15 32.11 1.82
6643 7519 7.777910 TCAGAGGAAGAAACATGTTTAGGAAAA 59.222 33.333 23.33 2.33 32.11 2.29
6644 7520 7.287061 TCAGAGGAAGAAACATGTTTAGGAAA 58.713 34.615 23.33 1.69 32.11 3.13
6645 7521 6.837312 TCAGAGGAAGAAACATGTTTAGGAA 58.163 36.000 23.33 0.97 32.11 3.36
6646 7522 6.433847 TCAGAGGAAGAAACATGTTTAGGA 57.566 37.500 23.33 9.46 32.11 2.94
6647 7523 7.510549 TTTCAGAGGAAGAAACATGTTTAGG 57.489 36.000 23.33 7.52 33.82 2.69
6648 7524 9.971922 AATTTTCAGAGGAAGAAACATGTTTAG 57.028 29.630 23.33 6.91 34.94 1.85
6650 7526 9.671279 AAAATTTTCAGAGGAAGAAACATGTTT 57.329 25.926 23.49 23.49 34.94 2.83
6652 7528 9.971922 CTAAAATTTTCAGAGGAAGAAACATGT 57.028 29.630 6.72 0.00 34.94 3.21
6653 7529 8.919661 GCTAAAATTTTCAGAGGAAGAAACATG 58.080 33.333 6.72 0.00 34.94 3.21
6654 7530 8.641541 TGCTAAAATTTTCAGAGGAAGAAACAT 58.358 29.630 6.72 0.00 34.94 2.71
6655 7531 8.006298 TGCTAAAATTTTCAGAGGAAGAAACA 57.994 30.769 6.72 0.00 34.94 2.83
6656 7532 8.755941 GTTGCTAAAATTTTCAGAGGAAGAAAC 58.244 33.333 6.72 4.87 34.94 2.78
6657 7533 8.695456 AGTTGCTAAAATTTTCAGAGGAAGAAA 58.305 29.630 6.72 0.00 33.82 2.52
6658 7534 8.237811 AGTTGCTAAAATTTTCAGAGGAAGAA 57.762 30.769 6.72 0.00 33.82 2.52
6659 7535 7.823745 AGTTGCTAAAATTTTCAGAGGAAGA 57.176 32.000 6.72 0.00 33.82 2.87
6660 7536 8.137437 TGAAGTTGCTAAAATTTTCAGAGGAAG 58.863 33.333 6.72 0.00 33.82 3.46
6661 7537 8.006298 TGAAGTTGCTAAAATTTTCAGAGGAA 57.994 30.769 6.72 4.45 0.00 3.36
6662 7538 7.581213 TGAAGTTGCTAAAATTTTCAGAGGA 57.419 32.000 6.72 0.00 0.00 3.71
6663 7539 8.647143 TTTGAAGTTGCTAAAATTTTCAGAGG 57.353 30.769 6.72 0.00 0.00 3.69
6675 7551 9.290988 TGGTTCACTTATATTTGAAGTTGCTAA 57.709 29.630 0.00 0.00 34.90 3.09
6676 7552 8.856153 TGGTTCACTTATATTTGAAGTTGCTA 57.144 30.769 0.00 0.00 34.90 3.49
6677 7553 7.759489 TGGTTCACTTATATTTGAAGTTGCT 57.241 32.000 0.00 0.00 34.90 3.91
6678 7554 8.699749 GTTTGGTTCACTTATATTTGAAGTTGC 58.300 33.333 0.00 0.00 34.90 4.17
6679 7555 9.965824 AGTTTGGTTCACTTATATTTGAAGTTG 57.034 29.630 0.00 0.00 34.90 3.16
6681 7557 9.349713 TGAGTTTGGTTCACTTATATTTGAAGT 57.650 29.630 0.00 0.00 37.64 3.01
6683 7559 9.959749 GTTGAGTTTGGTTCACTTATATTTGAA 57.040 29.630 0.00 0.00 0.00 2.69
6684 7560 9.126151 TGTTGAGTTTGGTTCACTTATATTTGA 57.874 29.630 0.00 0.00 0.00 2.69
6685 7561 9.743057 TTGTTGAGTTTGGTTCACTTATATTTG 57.257 29.630 0.00 0.00 0.00 2.32
6690 7566 9.097257 CAATTTTGTTGAGTTTGGTTCACTTAT 57.903 29.630 0.00 0.00 0.00 1.73
6691 7567 8.307483 TCAATTTTGTTGAGTTTGGTTCACTTA 58.693 29.630 0.00 0.00 0.00 2.24
6692 7568 7.158021 TCAATTTTGTTGAGTTTGGTTCACTT 58.842 30.769 0.00 0.00 0.00 3.16
6693 7569 6.696411 TCAATTTTGTTGAGTTTGGTTCACT 58.304 32.000 0.00 0.00 0.00 3.41
6694 7570 6.959671 TCAATTTTGTTGAGTTTGGTTCAC 57.040 33.333 0.00 0.00 0.00 3.18
6695 7571 7.437862 GCTATCAATTTTGTTGAGTTTGGTTCA 59.562 33.333 0.00 0.00 0.00 3.18
6696 7572 7.437862 TGCTATCAATTTTGTTGAGTTTGGTTC 59.562 33.333 0.00 0.00 0.00 3.62
6697 7573 7.271511 TGCTATCAATTTTGTTGAGTTTGGTT 58.728 30.769 0.00 0.00 0.00 3.67
6698 7574 6.815089 TGCTATCAATTTTGTTGAGTTTGGT 58.185 32.000 0.00 0.00 0.00 3.67
6699 7575 7.439056 AGTTGCTATCAATTTTGTTGAGTTTGG 59.561 33.333 0.00 0.00 34.29 3.28
6700 7576 8.356533 AGTTGCTATCAATTTTGTTGAGTTTG 57.643 30.769 0.00 0.00 34.29 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.