Multiple sequence alignment - TraesCS6D01G331200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G331200 chr6D 100.000 5027 0 0 1 5027 434144583 434139557 0.000000e+00 9284.0
1 TraesCS6D01G331200 chr6D 80.377 265 45 5 200 458 123158971 123159234 1.430000e-45 195.0
2 TraesCS6D01G331200 chr6B 94.595 3996 193 14 502 4486 656526932 656522949 0.000000e+00 6161.0
3 TraesCS6D01G331200 chr6B 88.476 538 38 7 1 516 656529730 656529195 3.300000e-176 628.0
4 TraesCS6D01G331200 chr6B 89.697 165 9 5 4624 4788 656522577 656522421 2.370000e-48 204.0
5 TraesCS6D01G331200 chr6B 80.224 268 42 7 200 458 217168997 217169262 1.850000e-44 191.0
6 TraesCS6D01G331200 chr6A 95.803 3717 133 9 590 4285 580302558 580298844 0.000000e+00 5978.0
7 TraesCS6D01G331200 chr1A 83.197 244 31 10 212 448 498534486 498534246 1.100000e-51 215.0
8 TraesCS6D01G331200 chr4A 81.853 259 35 8 206 456 520084409 520084155 1.830000e-49 207.0
9 TraesCS6D01G331200 chr4D 81.928 249 40 4 211 456 69120639 69120393 6.600000e-49 206.0
10 TraesCS6D01G331200 chr2B 81.967 244 27 9 4576 4804 112205098 112205339 1.850000e-44 191.0
11 TraesCS6D01G331200 chr2B 81.250 240 37 8 195 429 788676883 788676647 2.390000e-43 187.0
12 TraesCS6D01G331200 chr2B 81.176 85 14 2 4318 4401 153902427 153902510 3.250000e-07 67.6
13 TraesCS6D01G331200 chr7B 80.159 252 45 5 196 444 169295477 169295726 3.090000e-42 183.0
14 TraesCS6D01G331200 chr7B 79.775 267 42 8 200 459 329085099 329084838 3.090000e-42 183.0
15 TraesCS6D01G331200 chr2D 81.224 245 30 7 4576 4804 73865756 73866000 3.090000e-42 183.0
16 TraesCS6D01G331200 chr5B 78.095 210 26 13 4576 4782 576056811 576056619 1.140000e-21 115.0
17 TraesCS6D01G331200 chr5B 94.737 38 2 0 4576 4613 399798405 399798442 5.430000e-05 60.2
18 TraesCS6D01G331200 chr7A 84.884 86 13 0 4576 4661 707988522 707988607 2.490000e-13 87.9
19 TraesCS6D01G331200 chr1B 88.889 72 6 2 4576 4646 567197890 567197820 2.490000e-13 87.9
20 TraesCS6D01G331200 chr1B 97.368 38 0 1 4767 4803 662014610 662014647 4.200000e-06 63.9
21 TraesCS6D01G331200 chr1B 100.000 30 0 0 172 201 155502760 155502731 7.030000e-04 56.5
22 TraesCS6D01G331200 chr3D 87.273 55 7 0 4576 4630 48054794 48054848 4.200000e-06 63.9
23 TraesCS6D01G331200 chr3A 87.273 55 7 0 4576 4630 60295098 60295152 4.200000e-06 63.9
24 TraesCS6D01G331200 chr3A 94.595 37 0 2 169 204 147811361 147811326 7.030000e-04 56.5
25 TraesCS6D01G331200 chr5D 100.000 29 0 0 173 201 257169876 257169848 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G331200 chr6D 434139557 434144583 5026 True 9284 9284 100.000000 1 5027 1 chr6D.!!$R1 5026
1 TraesCS6D01G331200 chr6B 656522421 656529730 7309 True 2331 6161 90.922667 1 4788 3 chr6B.!!$R1 4787
2 TraesCS6D01G331200 chr6A 580298844 580302558 3714 True 5978 5978 95.803000 590 4285 1 chr6A.!!$R1 3695

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
707 3011 1.001597 GCTACAAGATACTCGGTCCCG 60.002 57.143 0.0 0.0 41.35 5.14 F
708 3012 1.001597 CTACAAGATACTCGGTCCCGC 60.002 57.143 0.0 0.0 39.59 6.13 F
2270 4587 0.179100 ATGTCACGAATCCCAGCGAG 60.179 55.000 0.0 0.0 0.00 5.03 F
3015 5335 0.041238 ACATGGTCGGGAAGAGGAGA 59.959 55.000 0.0 0.0 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2115 4432 0.687354 ACACCTGGCACTTGAGGTAG 59.313 55.000 0.00 0.00 40.85 3.18 R
2321 4641 1.270465 TGACTCCAGCACTGTGACATG 60.270 52.381 12.86 6.55 0.00 3.21 R
3361 5681 1.372087 CGAAGCTCCAGGTTCCATGC 61.372 60.000 11.90 0.00 46.50 4.06 R
4592 7190 0.029474 TATCTTAGGGGTGGGGGTGG 60.029 60.000 0.00 0.00 0.00 4.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.782339 TGTAAGGAAACAAATAGCTACCTAAC 57.218 34.615 0.00 0.00 0.00 2.34
58 59 2.225091 ACATGGAGGCAACCAGAATTCA 60.225 45.455 8.44 0.00 43.49 2.57
66 67 1.815003 CAACCAGAATTCACTCTGCCC 59.185 52.381 8.44 0.00 41.36 5.36
70 71 1.404391 CAGAATTCACTCTGCCCATGC 59.596 52.381 8.44 0.00 36.67 4.06
115 137 4.915704 TCAAAATCAAACTTGACGGTGTC 58.084 39.130 0.00 0.00 40.49 3.67
118 140 1.295792 TCAAACTTGACGGTGTCAGC 58.704 50.000 0.00 0.00 43.69 4.26
149 171 5.622346 ACAAGGATATCCAACTCCTTCTC 57.378 43.478 23.81 0.00 46.58 2.87
158 180 3.700038 TCCAACTCCTTCTCGGTCTAATC 59.300 47.826 0.00 0.00 0.00 1.75
176 198 8.086522 GGTCTAATCAGATATGCATGCATTTTT 58.913 33.333 36.23 21.72 37.82 1.94
204 226 5.446031 AATACGCAAAGCTTACGTACTTC 57.554 39.130 27.19 0.00 44.15 3.01
208 230 2.671888 GCAAAGCTTACGTACTTCCTCC 59.328 50.000 0.00 0.00 0.00 4.30
209 231 3.863400 GCAAAGCTTACGTACTTCCTCCA 60.863 47.826 0.00 0.00 0.00 3.86
213 235 4.756502 AGCTTACGTACTTCCTCCATTTC 58.243 43.478 0.00 0.00 0.00 2.17
499 522 2.693591 AGATGCATGCATTTGGGAGAAG 59.306 45.455 32.60 0.00 36.70 2.85
505 2805 4.267536 CATGCATTTGGGAGAAGAGAAGA 58.732 43.478 0.00 0.00 0.00 2.87
542 2842 6.609616 AGATTACAAAAAGTTCCACTCCCAAA 59.390 34.615 0.00 0.00 0.00 3.28
548 2848 8.271458 ACAAAAAGTTCCACTCCCAAATTTTAT 58.729 29.630 0.00 0.00 30.68 1.40
549 2849 8.773645 CAAAAAGTTCCACTCCCAAATTTTATC 58.226 33.333 0.00 0.00 30.68 1.75
550 2850 6.605471 AAGTTCCACTCCCAAATTTTATCC 57.395 37.500 0.00 0.00 0.00 2.59
552 2852 6.081356 AGTTCCACTCCCAAATTTTATCCAA 58.919 36.000 0.00 0.00 0.00 3.53
624 2928 5.243954 ACTGTAGGAATTCAAAGAAAAGGCC 59.756 40.000 7.93 0.00 0.00 5.19
645 2949 4.500375 GCCAGAAATGAAGGAATACATGGC 60.500 45.833 0.00 0.00 0.00 4.40
703 3007 3.362706 TCCAAGCTACAAGATACTCGGT 58.637 45.455 0.00 0.00 0.00 4.69
707 3011 1.001597 GCTACAAGATACTCGGTCCCG 60.002 57.143 0.00 0.00 41.35 5.14
708 3012 1.001597 CTACAAGATACTCGGTCCCGC 60.002 57.143 0.00 0.00 39.59 6.13
761 3065 4.184629 CCTTAAACAATCTCCTCCTGTCG 58.815 47.826 0.00 0.00 0.00 4.35
795 3099 1.360393 TTTCCAGTGGCACCTCCCTT 61.360 55.000 15.27 0.00 0.00 3.95
973 3286 3.125573 CGAGCAGAGACCGACCGA 61.126 66.667 0.00 0.00 0.00 4.69
1614 3931 4.314440 GTCAGCGCCACCAGGTCA 62.314 66.667 2.29 0.00 37.19 4.02
1617 3934 2.603473 AGCGCCACCAGGTCACTA 60.603 61.111 2.29 0.00 37.19 2.74
1647 3964 3.115892 GCACCGATCAACCGCGAA 61.116 61.111 8.23 0.00 0.00 4.70
1680 3997 1.961277 GGTGGTGGACGTGCTGAAG 60.961 63.158 8.99 0.00 0.00 3.02
1685 4002 2.266055 GGACGTGCTGAAGAGGGG 59.734 66.667 0.00 0.00 0.00 4.79
1761 4078 2.713770 GAGGTCGTCGCGCTGATA 59.286 61.111 5.56 0.00 0.00 2.15
1965 4282 2.802667 CGAGGAAAGATGCGCGGTG 61.803 63.158 8.83 0.00 36.60 4.94
1971 4288 4.722700 AGATGCGCGGTGGCCTTT 62.723 61.111 8.83 0.00 35.02 3.11
1998 4315 1.677552 GCAGGAAACGAGGAGGGAA 59.322 57.895 0.00 0.00 0.00 3.97
2136 4453 1.362224 ACCTCAAGTGCCAGGTGTAT 58.638 50.000 0.00 0.00 41.79 2.29
2235 4552 0.674581 TCTCGCCGAGGTTCGTAGAA 60.675 55.000 15.08 0.00 45.90 2.10
2238 4555 1.203052 TCGCCGAGGTTCGTAGAAAAT 59.797 47.619 0.00 0.00 45.90 1.82
2246 4563 6.183360 CCGAGGTTCGTAGAAAATTCTTTCTC 60.183 42.308 0.29 0.79 41.81 2.87
2266 4583 3.977427 TCGATTATGTCACGAATCCCAG 58.023 45.455 0.00 0.00 33.20 4.45
2267 4584 2.476619 CGATTATGTCACGAATCCCAGC 59.523 50.000 0.00 0.00 0.00 4.85
2268 4585 1.934589 TTATGTCACGAATCCCAGCG 58.065 50.000 0.00 0.00 0.00 5.18
2269 4586 1.107945 TATGTCACGAATCCCAGCGA 58.892 50.000 0.00 0.00 0.00 4.93
2270 4587 0.179100 ATGTCACGAATCCCAGCGAG 60.179 55.000 0.00 0.00 0.00 5.03
2318 4638 6.402875 CCATGAGTGTGTGATTAACTGTCATG 60.403 42.308 0.00 0.00 37.74 3.07
2321 4641 6.202762 TGAGTGTGTGATTAACTGTCATGTTC 59.797 38.462 0.00 0.00 0.00 3.18
2325 4645 6.486320 TGTGTGATTAACTGTCATGTTCATGT 59.514 34.615 11.73 0.00 0.00 3.21
2355 4675 1.964223 GGAGTCAATCGAGGCATCCTA 59.036 52.381 0.00 0.00 31.76 2.94
2676 4996 3.367743 TCGGCGGTTACGTGCTCT 61.368 61.111 7.21 0.00 43.45 4.09
2798 5118 2.737376 GACACCGGTGCCTTCGAC 60.737 66.667 34.26 12.76 0.00 4.20
2853 5173 2.677979 GGACGAAAAGGTGCTCGCC 61.678 63.158 0.00 0.00 38.64 5.54
2925 5245 1.269309 GCTGATACGATCGTGAAGGCT 60.269 52.381 30.23 7.87 0.00 4.58
2934 5254 2.415608 CGTGAAGGCTAGGCTCGGA 61.416 63.158 20.50 3.47 0.00 4.55
3015 5335 0.041238 ACATGGTCGGGAAGAGGAGA 59.959 55.000 0.00 0.00 0.00 3.71
3021 5341 0.325671 TCGGGAAGAGGAGAATGGCT 60.326 55.000 0.00 0.00 0.00 4.75
3378 5698 1.000396 GGCATGGAACCTGGAGCTT 60.000 57.895 0.00 0.00 0.00 3.74
3381 5701 0.745845 CATGGAACCTGGAGCTTCGG 60.746 60.000 0.00 0.00 0.00 4.30
3512 5832 2.642249 GATCACATCGACGACGGCGA 62.642 60.000 30.08 30.08 42.48 5.54
4108 6430 6.959311 CGGTGTACATTAGTGCTTTGTAAATC 59.041 38.462 0.00 0.00 0.00 2.17
4118 6440 3.696051 TGCTTTGTAAATCCTCAGCATCC 59.304 43.478 0.00 0.00 0.00 3.51
4289 6614 9.197694 CTCAACTTTTCGATATTAGGTAGATGG 57.802 37.037 0.00 0.00 0.00 3.51
4301 6626 2.043227 GGTAGATGGAGAAGAGGTGGG 58.957 57.143 0.00 0.00 0.00 4.61
4345 6671 1.270907 AGGAGCCAGTCGACTGAAAT 58.729 50.000 40.21 26.77 46.59 2.17
4346 6672 1.625818 AGGAGCCAGTCGACTGAAATT 59.374 47.619 40.21 24.07 46.59 1.82
4347 6673 2.039084 AGGAGCCAGTCGACTGAAATTT 59.961 45.455 40.21 22.49 46.59 1.82
4348 6674 2.416893 GGAGCCAGTCGACTGAAATTTC 59.583 50.000 40.21 27.30 46.59 2.17
4349 6675 3.330267 GAGCCAGTCGACTGAAATTTCT 58.670 45.455 40.21 25.81 46.59 2.52
4350 6676 3.744660 AGCCAGTCGACTGAAATTTCTT 58.255 40.909 40.21 16.71 46.59 2.52
4351 6677 4.137543 AGCCAGTCGACTGAAATTTCTTT 58.862 39.130 40.21 15.35 46.59 2.52
4363 6689 3.385193 AATTTCTTTTTGGGTCAGCCG 57.615 42.857 0.00 0.00 34.97 5.52
4365 6691 1.314730 TTCTTTTTGGGTCAGCCGAC 58.685 50.000 0.00 0.00 41.80 4.79
4369 6695 2.642154 TTTTGGGTCAGCCGACTTTA 57.358 45.000 0.00 0.00 42.21 1.85
4370 6696 1.886886 TTTGGGTCAGCCGACTTTAC 58.113 50.000 0.00 0.00 42.21 2.01
4375 6701 0.458025 GTCAGCCGACTTTACGAGGG 60.458 60.000 0.00 0.00 39.22 4.30
4377 6703 0.736325 CAGCCGACTTTACGAGGGTG 60.736 60.000 0.00 0.00 44.24 4.61
4380 6706 1.706443 CCGACTTTACGAGGGTGAAC 58.294 55.000 0.00 0.00 35.09 3.18
4414 6740 2.190756 AAAAACAAACGACCCCGCA 58.809 47.368 0.00 0.00 39.95 5.69
4435 6761 3.570912 TCTTCTTCCTCCAACCGTTTT 57.429 42.857 0.00 0.00 0.00 2.43
4437 6763 2.265589 TCTTCCTCCAACCGTTTTCC 57.734 50.000 0.00 0.00 0.00 3.13
4440 6766 2.740506 TCCTCCAACCGTTTTCCTTT 57.259 45.000 0.00 0.00 0.00 3.11
4441 6767 2.303175 TCCTCCAACCGTTTTCCTTTG 58.697 47.619 0.00 0.00 0.00 2.77
4442 6768 2.028876 CCTCCAACCGTTTTCCTTTGT 58.971 47.619 0.00 0.00 0.00 2.83
4443 6769 2.223711 CCTCCAACCGTTTTCCTTTGTG 60.224 50.000 0.00 0.00 0.00 3.33
4444 6770 2.685897 CTCCAACCGTTTTCCTTTGTGA 59.314 45.455 0.00 0.00 0.00 3.58
4445 6771 3.090037 TCCAACCGTTTTCCTTTGTGAA 58.910 40.909 0.00 0.00 0.00 3.18
4459 6785 4.739716 CCTTTGTGAAAAACAGATCGTTGG 59.260 41.667 4.16 0.00 40.74 3.77
4477 6803 1.149148 GGTGCTCGTGTTCTTCTTCC 58.851 55.000 0.00 0.00 0.00 3.46
4486 6812 0.529378 GTTCTTCTTCCTCCGCCGTA 59.471 55.000 0.00 0.00 0.00 4.02
4487 6813 1.136500 GTTCTTCTTCCTCCGCCGTAT 59.864 52.381 0.00 0.00 0.00 3.06
4488 6814 0.744874 TCTTCTTCCTCCGCCGTATG 59.255 55.000 0.00 0.00 0.00 2.39
4489 6815 0.876342 CTTCTTCCTCCGCCGTATGC 60.876 60.000 0.00 0.00 0.00 3.14
4490 6816 1.327690 TTCTTCCTCCGCCGTATGCT 61.328 55.000 0.00 0.00 38.05 3.79
4491 6817 1.300233 CTTCCTCCGCCGTATGCTC 60.300 63.158 0.00 0.00 38.05 4.26
4492 6818 2.701163 CTTCCTCCGCCGTATGCTCC 62.701 65.000 0.00 0.00 38.05 4.70
4493 6819 4.301027 CCTCCGCCGTATGCTCCC 62.301 72.222 0.00 0.00 38.05 4.30
4494 6820 4.301027 CTCCGCCGTATGCTCCCC 62.301 72.222 0.00 0.00 38.05 4.81
4497 6823 4.301027 CGCCGTATGCTCCCCCTC 62.301 72.222 0.00 0.00 38.05 4.30
4498 6824 3.942439 GCCGTATGCTCCCCCTCC 61.942 72.222 0.00 0.00 36.87 4.30
4499 6825 2.445845 CCGTATGCTCCCCCTCCA 60.446 66.667 0.00 0.00 0.00 3.86
4500 6826 2.808206 CCGTATGCTCCCCCTCCAC 61.808 68.421 0.00 0.00 0.00 4.02
4501 6827 2.808206 CGTATGCTCCCCCTCCACC 61.808 68.421 0.00 0.00 0.00 4.61
4502 6828 2.039831 TATGCTCCCCCTCCACCC 60.040 66.667 0.00 0.00 0.00 4.61
4503 6829 3.731886 TATGCTCCCCCTCCACCCC 62.732 68.421 0.00 0.00 0.00 4.95
4533 7131 3.319198 GTCGGTGCCTTCCCCTCA 61.319 66.667 0.00 0.00 0.00 3.86
4534 7132 2.528127 TCGGTGCCTTCCCCTCAA 60.528 61.111 0.00 0.00 0.00 3.02
4553 7151 1.685765 CCTCTCCCCACCATCGTGA 60.686 63.158 0.00 0.00 43.14 4.35
4556 7154 0.617535 TCTCCCCACCATCGTGATGT 60.618 55.000 8.89 0.00 43.14 3.06
4591 7189 2.583441 CCTCTCCGGTGAACCTGCA 61.583 63.158 7.75 0.00 0.00 4.41
4592 7190 1.374758 CTCTCCGGTGAACCTGCAC 60.375 63.158 7.75 0.00 38.05 4.57
4598 7196 2.597510 GTGAACCTGCACCACCCC 60.598 66.667 0.00 0.00 32.68 4.95
4599 7197 3.897122 TGAACCTGCACCACCCCC 61.897 66.667 0.00 0.00 0.00 5.40
4600 7198 3.897122 GAACCTGCACCACCCCCA 61.897 66.667 0.00 0.00 0.00 4.96
4601 7199 4.218686 AACCTGCACCACCCCCAC 62.219 66.667 0.00 0.00 0.00 4.61
4607 7205 2.533232 CACCACCCCCACCCCTAA 60.533 66.667 0.00 0.00 0.00 2.69
4608 7206 2.204244 ACCACCCCCACCCCTAAG 60.204 66.667 0.00 0.00 0.00 2.18
4609 7207 2.126372 CCACCCCCACCCCTAAGA 59.874 66.667 0.00 0.00 0.00 2.10
4610 7208 1.308746 CCACCCCCACCCCTAAGAT 60.309 63.158 0.00 0.00 0.00 2.40
4611 7209 0.029474 CCACCCCCACCCCTAAGATA 60.029 60.000 0.00 0.00 0.00 1.98
4612 7210 1.435256 CACCCCCACCCCTAAGATAG 58.565 60.000 0.00 0.00 0.00 2.08
4613 7211 1.061657 CACCCCCACCCCTAAGATAGA 60.062 57.143 0.00 0.00 0.00 1.98
4614 7212 1.061579 ACCCCCACCCCTAAGATAGAC 60.062 57.143 0.00 0.00 0.00 2.59
4615 7213 1.061657 CCCCCACCCCTAAGATAGACA 60.062 57.143 0.00 0.00 0.00 3.41
4616 7214 2.631268 CCCCCACCCCTAAGATAGACAA 60.631 54.545 0.00 0.00 0.00 3.18
4617 7215 2.438392 CCCCACCCCTAAGATAGACAAC 59.562 54.545 0.00 0.00 0.00 3.32
4618 7216 3.112263 CCCACCCCTAAGATAGACAACA 58.888 50.000 0.00 0.00 0.00 3.33
4619 7217 3.134804 CCCACCCCTAAGATAGACAACAG 59.865 52.174 0.00 0.00 0.00 3.16
4620 7218 3.134804 CCACCCCTAAGATAGACAACAGG 59.865 52.174 0.00 0.00 0.00 4.00
4621 7219 3.134804 CACCCCTAAGATAGACAACAGGG 59.865 52.174 0.00 0.00 42.09 4.45
4622 7220 2.104963 CCCCTAAGATAGACAACAGGGC 59.895 54.545 0.00 0.00 41.26 5.19
4623 7221 2.771943 CCCTAAGATAGACAACAGGGCA 59.228 50.000 0.00 0.00 36.56 5.36
4624 7222 3.432326 CCCTAAGATAGACAACAGGGCAC 60.432 52.174 0.00 0.00 36.56 5.01
4660 7258 1.285078 GCACCCCCTTCACCTTAAGAT 59.715 52.381 3.36 0.00 0.00 2.40
4687 7285 1.547901 GGAGGTTGTTTCTTCCCCCTG 60.548 57.143 0.00 0.00 0.00 4.45
4690 7288 0.673985 GTTGTTTCTTCCCCCTGCAC 59.326 55.000 0.00 0.00 0.00 4.57
4691 7289 0.469144 TTGTTTCTTCCCCCTGCACC 60.469 55.000 0.00 0.00 0.00 5.01
4692 7290 1.606601 GTTTCTTCCCCCTGCACCC 60.607 63.158 0.00 0.00 0.00 4.61
4693 7291 1.778383 TTTCTTCCCCCTGCACCCT 60.778 57.895 0.00 0.00 0.00 4.34
4694 7292 0.476808 TTTCTTCCCCCTGCACCCTA 60.477 55.000 0.00 0.00 0.00 3.53
4695 7293 0.476808 TTCTTCCCCCTGCACCCTAA 60.477 55.000 0.00 0.00 0.00 2.69
4696 7294 0.914417 TCTTCCCCCTGCACCCTAAG 60.914 60.000 0.00 0.00 0.00 2.18
4732 7330 3.450115 GCCTCGGTGCTCTACGGT 61.450 66.667 0.00 0.00 0.00 4.83
4759 7357 5.924475 TCTTTCTTCTCCAACAAATCGAC 57.076 39.130 0.00 0.00 0.00 4.20
4761 7359 5.696724 TCTTTCTTCTCCAACAAATCGACTC 59.303 40.000 0.00 0.00 0.00 3.36
4769 7367 3.255642 CCAACAAATCGACTCACCCAAAT 59.744 43.478 0.00 0.00 0.00 2.32
4771 7369 5.288804 CAACAAATCGACTCACCCAAATTT 58.711 37.500 0.00 0.00 0.00 1.82
4798 7396 2.736995 GCGACTGGCGTGCAACTA 60.737 61.111 4.21 0.00 43.41 2.24
4799 7397 2.314647 GCGACTGGCGTGCAACTAA 61.315 57.895 4.21 0.00 43.41 2.24
4800 7398 1.837538 GCGACTGGCGTGCAACTAAA 61.838 55.000 4.21 0.00 43.41 1.85
4801 7399 0.110823 CGACTGGCGTGCAACTAAAC 60.111 55.000 0.00 0.00 34.64 2.01
4802 7400 1.226746 GACTGGCGTGCAACTAAACT 58.773 50.000 0.00 0.00 31.75 2.66
4803 7401 0.944386 ACTGGCGTGCAACTAAACTG 59.056 50.000 0.00 0.00 31.75 3.16
4804 7402 0.238289 CTGGCGTGCAACTAAACTGG 59.762 55.000 0.00 0.00 31.75 4.00
4805 7403 0.179043 TGGCGTGCAACTAAACTGGA 60.179 50.000 0.00 0.00 31.75 3.86
4806 7404 0.948678 GGCGTGCAACTAAACTGGAA 59.051 50.000 0.00 0.00 31.75 3.53
4807 7405 1.335496 GGCGTGCAACTAAACTGGAAA 59.665 47.619 0.00 0.00 31.75 3.13
4808 7406 2.223618 GGCGTGCAACTAAACTGGAAAA 60.224 45.455 0.00 0.00 31.75 2.29
4809 7407 2.787129 GCGTGCAACTAAACTGGAAAAC 59.213 45.455 0.00 0.00 31.75 2.43
4810 7408 3.732471 GCGTGCAACTAAACTGGAAAACA 60.732 43.478 0.00 0.00 31.75 2.83
4811 7409 4.606961 CGTGCAACTAAACTGGAAAACAT 58.393 39.130 0.00 0.00 31.75 2.71
4812 7410 5.753744 CGTGCAACTAAACTGGAAAACATA 58.246 37.500 0.00 0.00 31.75 2.29
4813 7411 5.851177 CGTGCAACTAAACTGGAAAACATAG 59.149 40.000 0.00 0.00 31.75 2.23
4814 7412 5.629435 GTGCAACTAAACTGGAAAACATAGC 59.371 40.000 0.00 0.00 0.00 2.97
4815 7413 4.851558 GCAACTAAACTGGAAAACATAGCG 59.148 41.667 0.00 0.00 0.00 4.26
4816 7414 4.680171 ACTAAACTGGAAAACATAGCGC 57.320 40.909 0.00 0.00 0.00 5.92
4817 7415 4.069304 ACTAAACTGGAAAACATAGCGCA 58.931 39.130 11.47 0.00 0.00 6.09
4818 7416 2.989422 AACTGGAAAACATAGCGCAC 57.011 45.000 11.47 0.00 0.00 5.34
4819 7417 2.185004 ACTGGAAAACATAGCGCACT 57.815 45.000 11.47 0.00 0.00 4.40
4820 7418 2.504367 ACTGGAAAACATAGCGCACTT 58.496 42.857 11.47 0.00 0.00 3.16
4821 7419 2.226437 ACTGGAAAACATAGCGCACTTG 59.774 45.455 11.47 6.42 0.00 3.16
4822 7420 1.068610 TGGAAAACATAGCGCACTTGC 60.069 47.619 11.47 0.00 37.78 4.01
4823 7421 1.617740 GAAAACATAGCGCACTTGCC 58.382 50.000 11.47 0.00 37.91 4.52
4824 7422 0.958091 AAAACATAGCGCACTTGCCA 59.042 45.000 11.47 0.00 37.91 4.92
4825 7423 1.176527 AAACATAGCGCACTTGCCAT 58.823 45.000 11.47 0.00 37.91 4.40
4826 7424 1.176527 AACATAGCGCACTTGCCATT 58.823 45.000 11.47 0.00 37.91 3.16
4827 7425 2.036958 ACATAGCGCACTTGCCATTA 57.963 45.000 11.47 0.00 37.91 1.90
4828 7426 1.670811 ACATAGCGCACTTGCCATTAC 59.329 47.619 11.47 0.00 37.91 1.89
4829 7427 1.670295 CATAGCGCACTTGCCATTACA 59.330 47.619 11.47 0.00 37.91 2.41
4830 7428 1.083489 TAGCGCACTTGCCATTACAC 58.917 50.000 11.47 0.00 37.91 2.90
4831 7429 0.606401 AGCGCACTTGCCATTACACT 60.606 50.000 11.47 0.00 37.91 3.55
4832 7430 1.083489 GCGCACTTGCCATTACACTA 58.917 50.000 0.30 0.00 37.91 2.74
4833 7431 1.062587 GCGCACTTGCCATTACACTAG 59.937 52.381 0.30 0.00 37.91 2.57
4834 7432 1.665679 CGCACTTGCCATTACACTAGG 59.334 52.381 0.00 0.00 37.91 3.02
4835 7433 2.676750 CGCACTTGCCATTACACTAGGA 60.677 50.000 0.00 0.00 37.91 2.94
4836 7434 3.343617 GCACTTGCCATTACACTAGGAA 58.656 45.455 0.00 0.00 34.31 3.36
4837 7435 3.375299 GCACTTGCCATTACACTAGGAAG 59.625 47.826 0.00 0.00 34.31 3.46
4838 7436 3.375299 CACTTGCCATTACACTAGGAAGC 59.625 47.826 0.00 0.00 0.00 3.86
4839 7437 3.264450 ACTTGCCATTACACTAGGAAGCT 59.736 43.478 0.00 0.00 0.00 3.74
4840 7438 4.263506 ACTTGCCATTACACTAGGAAGCTT 60.264 41.667 0.00 0.00 0.00 3.74
4841 7439 4.301072 TGCCATTACACTAGGAAGCTTT 57.699 40.909 0.00 0.00 0.00 3.51
4842 7440 4.261801 TGCCATTACACTAGGAAGCTTTC 58.738 43.478 0.00 0.00 0.00 2.62
4843 7441 4.019321 TGCCATTACACTAGGAAGCTTTCT 60.019 41.667 13.02 13.02 0.00 2.52
4844 7442 4.572795 GCCATTACACTAGGAAGCTTTCTC 59.427 45.833 11.57 0.00 0.00 2.87
4845 7443 5.734720 CCATTACACTAGGAAGCTTTCTCA 58.265 41.667 11.57 0.00 0.00 3.27
4846 7444 6.173339 CCATTACACTAGGAAGCTTTCTCAA 58.827 40.000 11.57 0.00 0.00 3.02
4847 7445 6.314896 CCATTACACTAGGAAGCTTTCTCAAG 59.685 42.308 11.57 6.77 0.00 3.02
4848 7446 4.278975 ACACTAGGAAGCTTTCTCAAGG 57.721 45.455 11.57 2.35 0.00 3.61
4849 7447 3.904339 ACACTAGGAAGCTTTCTCAAGGA 59.096 43.478 11.57 0.00 0.00 3.36
4850 7448 4.534103 ACACTAGGAAGCTTTCTCAAGGAT 59.466 41.667 11.57 0.00 0.00 3.24
4851 7449 5.721960 ACACTAGGAAGCTTTCTCAAGGATA 59.278 40.000 11.57 0.00 0.00 2.59
4852 7450 6.213600 ACACTAGGAAGCTTTCTCAAGGATAA 59.786 38.462 11.57 0.00 0.00 1.75
4853 7451 7.106239 CACTAGGAAGCTTTCTCAAGGATAAA 58.894 38.462 11.57 0.00 0.00 1.40
4854 7452 7.607991 CACTAGGAAGCTTTCTCAAGGATAAAA 59.392 37.037 11.57 0.00 0.00 1.52
4855 7453 8.164070 ACTAGGAAGCTTTCTCAAGGATAAAAA 58.836 33.333 11.57 0.00 0.00 1.94
4856 7454 9.183368 CTAGGAAGCTTTCTCAAGGATAAAAAT 57.817 33.333 11.57 0.00 0.00 1.82
4857 7455 7.834803 AGGAAGCTTTCTCAAGGATAAAAATG 58.165 34.615 0.00 0.00 0.00 2.32
4858 7456 6.533012 GGAAGCTTTCTCAAGGATAAAAATGC 59.467 38.462 0.00 0.00 0.00 3.56
4859 7457 6.847421 AGCTTTCTCAAGGATAAAAATGCT 57.153 33.333 0.00 0.00 0.00 3.79
4860 7458 7.944729 AGCTTTCTCAAGGATAAAAATGCTA 57.055 32.000 0.00 0.00 0.00 3.49
4861 7459 8.353423 AGCTTTCTCAAGGATAAAAATGCTAA 57.647 30.769 0.00 0.00 0.00 3.09
4862 7460 8.806146 AGCTTTCTCAAGGATAAAAATGCTAAA 58.194 29.630 0.00 0.00 0.00 1.85
4863 7461 8.864024 GCTTTCTCAAGGATAAAAATGCTAAAC 58.136 33.333 0.00 0.00 0.00 2.01
4864 7462 8.964420 TTTCTCAAGGATAAAAATGCTAAACG 57.036 30.769 0.00 0.00 0.00 3.60
4865 7463 6.551736 TCTCAAGGATAAAAATGCTAAACGC 58.448 36.000 0.00 0.00 39.77 4.84
4873 7471 2.111460 TGCTAAACGCACGGGGTT 59.889 55.556 0.00 0.00 45.47 4.11
4874 7472 1.526455 TGCTAAACGCACGGGGTTT 60.526 52.632 18.09 18.09 45.47 3.27
4875 7473 1.081708 GCTAAACGCACGGGGTTTG 60.082 57.895 21.06 14.70 45.62 2.93
4876 7474 1.788067 GCTAAACGCACGGGGTTTGT 61.788 55.000 21.06 6.39 45.62 2.83
4877 7475 0.664224 CTAAACGCACGGGGTTTGTT 59.336 50.000 21.06 5.87 45.62 2.83
4878 7476 1.872313 CTAAACGCACGGGGTTTGTTA 59.128 47.619 21.06 7.75 45.62 2.41
4879 7477 0.381445 AAACGCACGGGGTTTGTTAC 59.619 50.000 14.92 0.00 44.70 2.50
4880 7478 0.747283 AACGCACGGGGTTTGTTACA 60.747 50.000 0.00 0.00 35.18 2.41
4881 7479 1.161563 ACGCACGGGGTTTGTTACAG 61.162 55.000 0.00 0.00 0.00 2.74
4882 7480 1.847890 CGCACGGGGTTTGTTACAGG 61.848 60.000 0.00 0.00 0.00 4.00
4883 7481 0.535553 GCACGGGGTTTGTTACAGGA 60.536 55.000 0.00 0.00 0.00 3.86
4884 7482 1.232119 CACGGGGTTTGTTACAGGAC 58.768 55.000 0.00 0.00 0.00 3.85
4885 7483 1.134228 ACGGGGTTTGTTACAGGACT 58.866 50.000 0.00 0.00 0.00 3.85
4886 7484 2.037511 CACGGGGTTTGTTACAGGACTA 59.962 50.000 0.00 0.00 0.00 2.59
4887 7485 2.908351 ACGGGGTTTGTTACAGGACTAT 59.092 45.455 0.00 0.00 0.00 2.12
4888 7486 3.328637 ACGGGGTTTGTTACAGGACTATT 59.671 43.478 0.00 0.00 0.00 1.73
4889 7487 4.531732 ACGGGGTTTGTTACAGGACTATTA 59.468 41.667 0.00 0.00 0.00 0.98
4890 7488 5.190330 ACGGGGTTTGTTACAGGACTATTAT 59.810 40.000 0.00 0.00 0.00 1.28
4891 7489 5.526111 CGGGGTTTGTTACAGGACTATTATG 59.474 44.000 2.08 0.00 0.00 1.90
4892 7490 5.826208 GGGGTTTGTTACAGGACTATTATGG 59.174 44.000 2.08 0.00 0.00 2.74
4893 7491 5.826208 GGGTTTGTTACAGGACTATTATGGG 59.174 44.000 2.08 0.00 0.00 4.00
4894 7492 6.353255 GGGTTTGTTACAGGACTATTATGGGA 60.353 42.308 2.08 0.00 0.00 4.37
4895 7493 6.541278 GGTTTGTTACAGGACTATTATGGGAC 59.459 42.308 2.08 0.00 0.00 4.46
4896 7494 5.524971 TGTTACAGGACTATTATGGGACG 57.475 43.478 0.00 0.00 0.00 4.79
4897 7495 4.957954 TGTTACAGGACTATTATGGGACGT 59.042 41.667 0.00 0.00 0.00 4.34
4898 7496 5.422970 TGTTACAGGACTATTATGGGACGTT 59.577 40.000 0.00 0.00 0.00 3.99
4899 7497 4.667519 ACAGGACTATTATGGGACGTTC 57.332 45.455 0.00 0.00 0.00 3.95
4900 7498 3.387050 ACAGGACTATTATGGGACGTTCC 59.613 47.826 5.70 5.70 35.23 3.62
4901 7499 3.386726 CAGGACTATTATGGGACGTTCCA 59.613 47.826 20.35 20.35 38.64 3.53
4902 7500 4.035112 AGGACTATTATGGGACGTTCCAA 58.965 43.478 22.13 4.27 40.62 3.53
4903 7501 4.658901 AGGACTATTATGGGACGTTCCAAT 59.341 41.667 22.13 12.71 40.62 3.16
4904 7502 5.842328 AGGACTATTATGGGACGTTCCAATA 59.158 40.000 22.13 13.21 40.62 1.90
4905 7503 6.328148 AGGACTATTATGGGACGTTCCAATAA 59.672 38.462 22.13 18.01 44.30 1.40
4907 7505 7.664318 GGACTATTATGGGACGTTCCAATAATT 59.336 37.037 22.13 5.25 46.21 1.40
4908 7506 8.617290 ACTATTATGGGACGTTCCAATAATTC 57.383 34.615 22.13 0.00 46.21 2.17
4909 7507 8.437575 ACTATTATGGGACGTTCCAATAATTCT 58.562 33.333 22.13 3.54 46.21 2.40
4910 7508 7.745620 ATTATGGGACGTTCCAATAATTCTC 57.254 36.000 22.13 0.00 46.21 2.87
4911 7509 3.881220 TGGGACGTTCCAATAATTCTCC 58.119 45.455 14.98 0.00 38.64 3.71
4912 7510 3.264706 TGGGACGTTCCAATAATTCTCCA 59.735 43.478 14.98 0.00 38.64 3.86
4913 7511 3.626217 GGGACGTTCCAATAATTCTCCAC 59.374 47.826 8.43 0.00 38.64 4.02
4914 7512 3.626217 GGACGTTCCAATAATTCTCCACC 59.374 47.826 0.00 0.00 36.28 4.61
4915 7513 3.617284 ACGTTCCAATAATTCTCCACCC 58.383 45.455 0.00 0.00 0.00 4.61
4916 7514 2.949644 CGTTCCAATAATTCTCCACCCC 59.050 50.000 0.00 0.00 0.00 4.95
4917 7515 3.623703 CGTTCCAATAATTCTCCACCCCA 60.624 47.826 0.00 0.00 0.00 4.96
4918 7516 4.349365 GTTCCAATAATTCTCCACCCCAA 58.651 43.478 0.00 0.00 0.00 4.12
4919 7517 3.976015 TCCAATAATTCTCCACCCCAAC 58.024 45.455 0.00 0.00 0.00 3.77
4920 7518 3.031013 CCAATAATTCTCCACCCCAACC 58.969 50.000 0.00 0.00 0.00 3.77
4921 7519 3.565449 CCAATAATTCTCCACCCCAACCA 60.565 47.826 0.00 0.00 0.00 3.67
4922 7520 2.891191 TAATTCTCCACCCCAACCAC 57.109 50.000 0.00 0.00 0.00 4.16
4923 7521 0.114364 AATTCTCCACCCCAACCACC 59.886 55.000 0.00 0.00 0.00 4.61
4924 7522 2.137177 ATTCTCCACCCCAACCACCG 62.137 60.000 0.00 0.00 0.00 4.94
4925 7523 4.344865 CTCCACCCCAACCACCGG 62.345 72.222 0.00 0.00 0.00 5.28
4926 7524 4.902258 TCCACCCCAACCACCGGA 62.902 66.667 9.46 0.00 0.00 5.14
4927 7525 3.892162 CCACCCCAACCACCGGAA 61.892 66.667 9.46 0.00 0.00 4.30
4928 7526 2.438795 CACCCCAACCACCGGAAT 59.561 61.111 9.46 0.00 0.00 3.01
4929 7527 1.228737 CACCCCAACCACCGGAATT 60.229 57.895 9.46 0.00 0.00 2.17
4930 7528 0.038455 CACCCCAACCACCGGAATTA 59.962 55.000 9.46 0.00 0.00 1.40
4931 7529 0.038599 ACCCCAACCACCGGAATTAC 59.961 55.000 9.46 0.00 0.00 1.89
4932 7530 0.038455 CCCCAACCACCGGAATTACA 59.962 55.000 9.46 0.00 0.00 2.41
4933 7531 1.170442 CCCAACCACCGGAATTACAC 58.830 55.000 9.46 0.00 0.00 2.90
4934 7532 1.545875 CCCAACCACCGGAATTACACA 60.546 52.381 9.46 0.00 0.00 3.72
4935 7533 1.810151 CCAACCACCGGAATTACACAG 59.190 52.381 9.46 0.00 0.00 3.66
4936 7534 2.551287 CCAACCACCGGAATTACACAGA 60.551 50.000 9.46 0.00 0.00 3.41
4937 7535 2.742053 CAACCACCGGAATTACACAGAG 59.258 50.000 9.46 0.00 0.00 3.35
4938 7536 1.278127 ACCACCGGAATTACACAGAGG 59.722 52.381 9.46 0.00 0.00 3.69
4939 7537 1.278127 CCACCGGAATTACACAGAGGT 59.722 52.381 9.46 0.00 0.00 3.85
4940 7538 2.498481 CCACCGGAATTACACAGAGGTA 59.502 50.000 9.46 0.00 0.00 3.08
4941 7539 3.430374 CCACCGGAATTACACAGAGGTAG 60.430 52.174 9.46 0.00 0.00 3.18
4942 7540 2.764572 ACCGGAATTACACAGAGGTAGG 59.235 50.000 9.46 0.00 0.00 3.18
4943 7541 2.102588 CCGGAATTACACAGAGGTAGGG 59.897 54.545 0.00 0.00 0.00 3.53
4944 7542 2.764572 CGGAATTACACAGAGGTAGGGT 59.235 50.000 0.00 0.00 0.00 4.34
4945 7543 3.181478 CGGAATTACACAGAGGTAGGGTC 60.181 52.174 0.00 0.00 0.00 4.46
4946 7544 3.134262 GGAATTACACAGAGGTAGGGTCC 59.866 52.174 0.00 0.00 0.00 4.46
4947 7545 2.242882 TTACACAGAGGTAGGGTCCC 57.757 55.000 0.00 0.00 0.00 4.46
4948 7546 1.390287 TACACAGAGGTAGGGTCCCT 58.610 55.000 16.73 16.73 37.71 4.20
4949 7547 0.492276 ACACAGAGGTAGGGTCCCTT 59.508 55.000 17.94 0.00 34.61 3.95
4950 7548 1.196012 CACAGAGGTAGGGTCCCTTC 58.804 60.000 17.94 11.42 34.61 3.46
4951 7549 0.790993 ACAGAGGTAGGGTCCCTTCA 59.209 55.000 17.94 0.00 34.61 3.02
4952 7550 1.151413 ACAGAGGTAGGGTCCCTTCAA 59.849 52.381 17.94 0.00 34.61 2.69
4953 7551 1.555533 CAGAGGTAGGGTCCCTTCAAC 59.444 57.143 17.94 8.39 34.61 3.18
4954 7552 0.910338 GAGGTAGGGTCCCTTCAACC 59.090 60.000 17.94 17.89 34.61 3.77
4961 7559 2.911552 GGTCCCTTCAACCCCATTAA 57.088 50.000 0.00 0.00 0.00 1.40
4962 7560 3.398318 GGTCCCTTCAACCCCATTAAT 57.602 47.619 0.00 0.00 0.00 1.40
4963 7561 3.296854 GGTCCCTTCAACCCCATTAATC 58.703 50.000 0.00 0.00 0.00 1.75
4964 7562 3.296854 GTCCCTTCAACCCCATTAATCC 58.703 50.000 0.00 0.00 0.00 3.01
4965 7563 2.929724 TCCCTTCAACCCCATTAATCCA 59.070 45.455 0.00 0.00 0.00 3.41
4966 7564 3.338214 TCCCTTCAACCCCATTAATCCAA 59.662 43.478 0.00 0.00 0.00 3.53
4967 7565 4.015730 TCCCTTCAACCCCATTAATCCAAT 60.016 41.667 0.00 0.00 0.00 3.16
4968 7566 5.196779 TCCCTTCAACCCCATTAATCCAATA 59.803 40.000 0.00 0.00 0.00 1.90
4969 7567 5.902431 CCCTTCAACCCCATTAATCCAATAA 59.098 40.000 0.00 0.00 0.00 1.40
4970 7568 6.385467 CCCTTCAACCCCATTAATCCAATAAA 59.615 38.462 0.00 0.00 0.00 1.40
4971 7569 7.092668 CCCTTCAACCCCATTAATCCAATAAAA 60.093 37.037 0.00 0.00 0.00 1.52
4972 7570 8.325046 CCTTCAACCCCATTAATCCAATAAAAA 58.675 33.333 0.00 0.00 0.00 1.94
4990 7588 3.575965 AAAATTTGCCAGGTCACGATC 57.424 42.857 0.00 0.00 0.00 3.69
4991 7589 2.198827 AATTTGCCAGGTCACGATCA 57.801 45.000 0.00 0.00 0.00 2.92
4992 7590 2.198827 ATTTGCCAGGTCACGATCAA 57.801 45.000 0.00 0.00 0.00 2.57
4993 7591 1.974265 TTTGCCAGGTCACGATCAAA 58.026 45.000 0.00 0.00 0.00 2.69
4994 7592 1.234821 TTGCCAGGTCACGATCAAAC 58.765 50.000 0.00 0.00 0.00 2.93
4995 7593 0.605319 TGCCAGGTCACGATCAAACC 60.605 55.000 0.00 0.00 0.00 3.27
4996 7594 0.321653 GCCAGGTCACGATCAAACCT 60.322 55.000 5.12 5.12 44.24 3.50
4997 7595 1.882352 GCCAGGTCACGATCAAACCTT 60.882 52.381 7.71 0.00 41.48 3.50
4998 7596 2.614481 GCCAGGTCACGATCAAACCTTA 60.614 50.000 7.71 0.00 41.48 2.69
4999 7597 3.670625 CCAGGTCACGATCAAACCTTAA 58.329 45.455 7.71 0.00 41.48 1.85
5000 7598 3.684788 CCAGGTCACGATCAAACCTTAAG 59.315 47.826 7.71 0.00 41.48 1.85
5001 7599 4.315803 CAGGTCACGATCAAACCTTAAGT 58.684 43.478 7.71 0.00 41.48 2.24
5002 7600 4.152402 CAGGTCACGATCAAACCTTAAGTG 59.848 45.833 7.71 0.00 41.48 3.16
5003 7601 4.062991 GGTCACGATCAAACCTTAAGTGT 58.937 43.478 0.97 0.00 0.00 3.55
5004 7602 4.514066 GGTCACGATCAAACCTTAAGTGTT 59.486 41.667 0.97 2.86 0.00 3.32
5005 7603 5.440685 GTCACGATCAAACCTTAAGTGTTG 58.559 41.667 9.27 8.84 0.00 3.33
5006 7604 5.235616 GTCACGATCAAACCTTAAGTGTTGA 59.764 40.000 16.23 16.23 33.23 3.18
5007 7605 5.995282 TCACGATCAAACCTTAAGTGTTGAT 59.005 36.000 21.83 21.83 38.14 2.57
5008 7606 6.073276 TCACGATCAAACCTTAAGTGTTGATG 60.073 38.462 24.67 19.84 36.85 3.07
5009 7607 5.763204 ACGATCAAACCTTAAGTGTTGATGT 59.237 36.000 24.67 20.24 36.85 3.06
5010 7608 6.079763 CGATCAAACCTTAAGTGTTGATGTG 58.920 40.000 24.67 16.88 36.85 3.21
5011 7609 5.766150 TCAAACCTTAAGTGTTGATGTGG 57.234 39.130 11.94 0.00 0.00 4.17
5012 7610 4.037446 TCAAACCTTAAGTGTTGATGTGGC 59.963 41.667 11.94 0.00 0.00 5.01
5013 7611 3.222173 ACCTTAAGTGTTGATGTGGCA 57.778 42.857 0.97 0.00 0.00 4.92
5014 7612 2.884639 ACCTTAAGTGTTGATGTGGCAC 59.115 45.455 11.55 11.55 0.00 5.01
5015 7613 3.149196 CCTTAAGTGTTGATGTGGCACT 58.851 45.455 19.83 4.13 44.31 4.40
5016 7614 4.202419 ACCTTAAGTGTTGATGTGGCACTA 60.202 41.667 19.83 5.69 41.94 2.74
5017 7615 4.943705 CCTTAAGTGTTGATGTGGCACTAT 59.056 41.667 19.83 10.53 41.94 2.12
5018 7616 5.415701 CCTTAAGTGTTGATGTGGCACTATT 59.584 40.000 19.83 3.49 41.94 1.73
5019 7617 4.771590 AAGTGTTGATGTGGCACTATTG 57.228 40.909 19.83 0.00 41.94 1.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.102346 TGGTTGCCTCCATGTTTTTATATTTG 58.898 34.615 0.00 0.00 31.96 2.32
40 41 1.425066 AGTGAATTCTGGTTGCCTCCA 59.575 47.619 7.05 0.00 36.00 3.86
77 78 8.558973 TTGATTTTGATCCAACAAGTGTTTTT 57.441 26.923 0.00 0.00 35.83 1.94
85 107 6.475076 CGTCAAGTTTGATTTTGATCCAACAA 59.525 34.615 0.00 0.00 39.73 2.83
96 118 3.243068 GCTGACACCGTCAAGTTTGATTT 60.243 43.478 0.00 0.00 42.26 2.17
115 137 6.528321 TGGATATCCTTGTTATCTTCTGCTG 58.472 40.000 22.35 0.00 36.82 4.41
118 140 7.659390 GGAGTTGGATATCCTTGTTATCTTCTG 59.341 40.741 22.35 0.00 36.82 3.02
149 171 4.248058 TGCATGCATATCTGATTAGACCG 58.752 43.478 18.46 0.00 35.34 4.79
187 209 2.671888 GGAGGAAGTACGTAAGCTTTGC 59.328 50.000 3.20 0.00 45.62 3.68
204 226 9.657419 AATATGCAAACTAAAAAGAAATGGAGG 57.343 29.630 0.00 0.00 0.00 4.30
288 310 7.604549 TGATGCTGATTTTGTATTGTCAATGT 58.395 30.769 8.39 0.00 0.00 2.71
529 2829 5.993748 TGGATAAAATTTGGGAGTGGAAC 57.006 39.130 0.00 0.00 0.00 3.62
530 2830 7.566658 ATTTGGATAAAATTTGGGAGTGGAA 57.433 32.000 0.00 0.00 34.72 3.53
587 2887 7.437862 TGAATTCCTACAGTTTTTCACAAATGC 59.562 33.333 2.27 0.00 0.00 3.56
621 2925 4.038402 CCATGTATTCCTTCATTTCTGGCC 59.962 45.833 0.00 0.00 0.00 5.36
624 2928 4.646040 TGGCCATGTATTCCTTCATTTCTG 59.354 41.667 0.00 0.00 0.00 3.02
645 2949 1.360551 CCGTATCCTCTGCTCGTGG 59.639 63.158 0.00 0.00 0.00 4.94
761 3065 2.600470 AAAAAGTGGCGGGGAGGC 60.600 61.111 0.00 0.00 46.95 4.70
795 3099 4.373116 GGTGTGCGCGAGGAAGGA 62.373 66.667 12.10 0.00 0.00 3.36
977 3290 4.090588 TGGGTGGGTTCGATCGGC 62.091 66.667 16.41 8.62 0.00 5.54
1581 3898 3.431683 GACGTAGACGCCGGAGTCG 62.432 68.421 29.13 21.78 45.26 4.18
1614 3931 4.394712 GCCTGCCGGTGCTGTAGT 62.395 66.667 1.90 0.00 38.71 2.73
1647 3964 2.208349 ACCTTGGCCACCTCCTCT 59.792 61.111 3.88 0.00 0.00 3.69
1680 3997 2.672996 TTGCGCTTCTTGCCCCTC 60.673 61.111 9.73 0.00 38.78 4.30
1685 4002 4.404654 CCGGGTTGCGCTTCTTGC 62.405 66.667 9.73 0.00 38.57 4.01
1998 4315 4.664677 GCCGTGTCGAGCACCACT 62.665 66.667 11.01 0.00 44.97 4.00
2115 4432 0.687354 ACACCTGGCACTTGAGGTAG 59.313 55.000 0.00 0.00 40.85 3.18
2118 4435 1.278985 TGATACACCTGGCACTTGAGG 59.721 52.381 0.00 0.00 35.26 3.86
2157 4474 2.692368 ACCGCCTGGATGTCCCAT 60.692 61.111 0.00 0.00 45.57 4.00
2235 4552 7.827819 TCGTGACATAATCGAGAAAGAATTT 57.172 32.000 0.00 0.00 43.98 1.82
2238 4555 6.475727 GGATTCGTGACATAATCGAGAAAGAA 59.524 38.462 0.00 0.00 33.72 2.52
2246 4563 2.476619 GCTGGGATTCGTGACATAATCG 59.523 50.000 7.16 0.00 33.72 3.34
2266 4583 6.033341 TGCCAAAATAAAATCACATACTCGC 58.967 36.000 0.00 0.00 0.00 5.03
2267 4584 8.372521 GTTTGCCAAAATAAAATCACATACTCG 58.627 33.333 0.00 0.00 0.00 4.18
2268 4585 8.655970 GGTTTGCCAAAATAAAATCACATACTC 58.344 33.333 0.00 0.00 34.09 2.59
2269 4586 8.153550 TGGTTTGCCAAAATAAAATCACATACT 58.846 29.630 0.00 0.00 42.83 2.12
2270 4587 8.316640 TGGTTTGCCAAAATAAAATCACATAC 57.683 30.769 0.00 0.00 42.83 2.39
2318 4638 1.802960 CTCCAGCACTGTGACATGAAC 59.197 52.381 12.86 0.00 0.00 3.18
2321 4641 1.270465 TGACTCCAGCACTGTGACATG 60.270 52.381 12.86 6.55 0.00 3.21
2325 4645 1.337167 CGATTGACTCCAGCACTGTGA 60.337 52.381 12.86 0.00 0.00 3.58
2355 4675 2.925170 ACCTCCACCGAGCTGCTT 60.925 61.111 2.53 0.00 34.49 3.91
2460 4780 3.356267 GCACACTGCATGTCGGCA 61.356 61.111 0.00 0.00 44.26 5.69
2659 4979 3.367743 AGAGCACGTAACCGCCGA 61.368 61.111 0.00 0.00 37.70 5.54
2676 4996 2.664851 CTTGCGCCGTTCCACTCA 60.665 61.111 4.18 0.00 0.00 3.41
2784 5104 4.353437 GTCGTCGAAGGCACCGGT 62.353 66.667 0.00 0.00 0.00 5.28
2817 5137 3.211963 GTGTCCCATGCCGATGCC 61.212 66.667 0.00 0.00 36.33 4.40
2853 5173 3.423154 GCCTCCGTGAGCCGTTTG 61.423 66.667 0.00 0.00 33.66 2.93
2940 5260 1.804326 CCCTAGTCGTCGCCGTTTG 60.804 63.158 0.00 0.00 35.01 2.93
3015 5335 2.188994 GAGAGCGCCTCAGCCATT 59.811 61.111 17.62 0.00 41.58 3.16
3033 5353 3.127533 GCGCCAAAGATCGCCACT 61.128 61.111 0.00 0.00 45.01 4.00
3361 5681 1.372087 CGAAGCTCCAGGTTCCATGC 61.372 60.000 11.90 0.00 46.50 4.06
3420 5740 1.892862 CCGGTATCCGTCGAGCTCT 60.893 63.158 12.85 0.00 46.80 4.09
3915 6235 4.210093 ACCGTCGTTGCACCGTCA 62.210 61.111 2.82 0.00 0.00 4.35
3957 6277 2.165301 GTCCATTCTTCGACGGCCG 61.165 63.158 26.86 26.86 40.25 6.13
4108 6430 5.174395 CCTAATTAATCTCGGATGCTGAGG 58.826 45.833 3.64 0.00 37.46 3.86
4118 6440 3.380479 TCCCGTGCCTAATTAATCTCG 57.620 47.619 0.00 0.00 0.00 4.04
4289 6614 4.618920 TTCACTTAACCCACCTCTTCTC 57.381 45.455 0.00 0.00 0.00 2.87
4301 6626 5.652452 AGCCATCCCTATGTTTTCACTTAAC 59.348 40.000 0.00 0.00 0.00 2.01
4333 6659 5.359860 ACCCAAAAAGAAATTTCAGTCGACT 59.640 36.000 19.99 13.58 0.00 4.18
4339 6665 4.751600 GGCTGACCCAAAAAGAAATTTCAG 59.248 41.667 19.99 6.53 0.00 3.02
4345 6671 1.679153 GTCGGCTGACCCAAAAAGAAA 59.321 47.619 15.20 0.00 39.30 2.52
4346 6672 1.133915 AGTCGGCTGACCCAAAAAGAA 60.134 47.619 22.17 0.00 46.74 2.52
4347 6673 0.472471 AGTCGGCTGACCCAAAAAGA 59.528 50.000 22.17 0.00 46.74 2.52
4348 6674 1.318576 AAGTCGGCTGACCCAAAAAG 58.681 50.000 22.17 0.00 46.74 2.27
4349 6675 1.770294 AAAGTCGGCTGACCCAAAAA 58.230 45.000 22.17 0.00 46.74 1.94
4350 6676 2.223745 GTAAAGTCGGCTGACCCAAAA 58.776 47.619 22.17 0.99 46.74 2.44
4351 6677 1.874739 CGTAAAGTCGGCTGACCCAAA 60.875 52.381 22.17 2.83 46.74 3.28
4363 6689 2.298163 TCAGGTTCACCCTCGTAAAGTC 59.702 50.000 0.00 0.00 43.86 3.01
4365 6691 3.326747 CTTCAGGTTCACCCTCGTAAAG 58.673 50.000 0.00 0.00 43.86 1.85
4369 6695 1.371558 GCTTCAGGTTCACCCTCGT 59.628 57.895 0.00 0.00 43.86 4.18
4370 6696 1.738099 CGCTTCAGGTTCACCCTCG 60.738 63.158 0.00 0.00 43.86 4.63
4375 6701 6.476243 TTTTATCTAACGCTTCAGGTTCAC 57.524 37.500 0.00 0.00 0.00 3.18
4407 6733 1.627297 GGAGGAAGAAGATGCGGGGT 61.627 60.000 0.00 0.00 0.00 4.95
4408 6734 1.147153 GGAGGAAGAAGATGCGGGG 59.853 63.158 0.00 0.00 0.00 5.73
4414 6740 3.790089 AAACGGTTGGAGGAAGAAGAT 57.210 42.857 0.00 0.00 0.00 2.40
4435 6761 5.449862 CCAACGATCTGTTTTTCACAAAGGA 60.450 40.000 0.00 0.00 39.29 3.36
4437 6763 5.229887 CACCAACGATCTGTTTTTCACAAAG 59.770 40.000 0.00 0.00 39.29 2.77
4440 6766 3.488384 GCACCAACGATCTGTTTTTCACA 60.488 43.478 0.00 0.00 39.29 3.58
4441 6767 3.042887 GCACCAACGATCTGTTTTTCAC 58.957 45.455 0.00 0.00 39.29 3.18
4442 6768 2.948979 AGCACCAACGATCTGTTTTTCA 59.051 40.909 0.00 0.00 39.29 2.69
4443 6769 3.555518 GAGCACCAACGATCTGTTTTTC 58.444 45.455 0.00 0.00 39.29 2.29
4444 6770 2.032030 CGAGCACCAACGATCTGTTTTT 60.032 45.455 0.00 0.00 39.29 1.94
4445 6771 1.531149 CGAGCACCAACGATCTGTTTT 59.469 47.619 0.00 0.00 39.29 2.43
4459 6785 2.062519 GAGGAAGAAGAACACGAGCAC 58.937 52.381 0.00 0.00 0.00 4.40
4515 6841 4.097361 GAGGGGAAGGCACCGACC 62.097 72.222 0.00 0.00 44.66 4.79
4516 6842 2.890766 TTGAGGGGAAGGCACCGAC 61.891 63.158 0.00 0.00 44.66 4.79
4517 6843 2.528127 TTGAGGGGAAGGCACCGA 60.528 61.111 0.00 0.00 44.66 4.69
4518 6844 2.359975 GTTGAGGGGAAGGCACCG 60.360 66.667 0.00 0.00 44.66 4.94
4519 6845 2.035783 GGTTGAGGGGAAGGCACC 59.964 66.667 0.00 0.00 38.12 5.01
4520 6846 1.002011 GAGGTTGAGGGGAAGGCAC 60.002 63.158 0.00 0.00 0.00 5.01
4521 6847 1.151810 AGAGGTTGAGGGGAAGGCA 60.152 57.895 0.00 0.00 0.00 4.75
4522 6848 1.604915 GAGAGGTTGAGGGGAAGGC 59.395 63.158 0.00 0.00 0.00 4.35
4523 6849 1.275421 GGGAGAGGTTGAGGGGAAGG 61.275 65.000 0.00 0.00 0.00 3.46
4524 6850 1.275421 GGGGAGAGGTTGAGGGGAAG 61.275 65.000 0.00 0.00 0.00 3.46
4525 6851 1.229853 GGGGAGAGGTTGAGGGGAA 60.230 63.158 0.00 0.00 0.00 3.97
4526 6852 2.454941 GGGGAGAGGTTGAGGGGA 59.545 66.667 0.00 0.00 0.00 4.81
4527 6853 2.124996 TGGGGAGAGGTTGAGGGG 59.875 66.667 0.00 0.00 0.00 4.79
4528 6854 2.301738 GGTGGGGAGAGGTTGAGGG 61.302 68.421 0.00 0.00 0.00 4.30
4533 7131 1.229529 ACGATGGTGGGGAGAGGTT 60.230 57.895 0.00 0.00 0.00 3.50
4534 7132 1.990060 CACGATGGTGGGGAGAGGT 60.990 63.158 0.00 0.00 40.58 3.85
4566 7164 3.866582 CACCGGAGAGGGATGGGC 61.867 72.222 9.46 0.00 46.96 5.36
4591 7189 2.146224 ATCTTAGGGGTGGGGGTGGT 62.146 60.000 0.00 0.00 0.00 4.16
4592 7190 0.029474 TATCTTAGGGGTGGGGGTGG 60.029 60.000 0.00 0.00 0.00 4.61
4593 7191 1.061657 TCTATCTTAGGGGTGGGGGTG 60.062 57.143 0.00 0.00 0.00 4.61
4594 7192 1.061579 GTCTATCTTAGGGGTGGGGGT 60.062 57.143 0.00 0.00 0.00 4.95
4596 7194 2.438392 GTTGTCTATCTTAGGGGTGGGG 59.562 54.545 0.00 0.00 0.00 4.96
4597 7195 3.112263 TGTTGTCTATCTTAGGGGTGGG 58.888 50.000 0.00 0.00 0.00 4.61
4598 7196 3.134804 CCTGTTGTCTATCTTAGGGGTGG 59.865 52.174 0.00 0.00 0.00 4.61
4599 7197 3.134804 CCCTGTTGTCTATCTTAGGGGTG 59.865 52.174 0.00 0.00 40.91 4.61
4600 7198 3.385115 CCCTGTTGTCTATCTTAGGGGT 58.615 50.000 0.00 0.00 40.91 4.95
4601 7199 2.104963 GCCCTGTTGTCTATCTTAGGGG 59.895 54.545 9.02 0.00 44.01 4.79
4602 7200 2.771943 TGCCCTGTTGTCTATCTTAGGG 59.228 50.000 0.00 0.00 46.07 3.53
4603 7201 3.432326 GGTGCCCTGTTGTCTATCTTAGG 60.432 52.174 0.00 0.00 0.00 2.69
4604 7202 3.452627 AGGTGCCCTGTTGTCTATCTTAG 59.547 47.826 0.00 0.00 29.57 2.18
4605 7203 3.197766 CAGGTGCCCTGTTGTCTATCTTA 59.802 47.826 11.85 0.00 45.82 2.10
4606 7204 2.026822 CAGGTGCCCTGTTGTCTATCTT 60.027 50.000 11.85 0.00 45.82 2.40
4607 7205 1.556911 CAGGTGCCCTGTTGTCTATCT 59.443 52.381 11.85 0.00 45.82 1.98
4608 7206 2.029838 CAGGTGCCCTGTTGTCTATC 57.970 55.000 11.85 0.00 45.82 2.08
4620 7218 1.222113 GAAGAGGGTAGCAGGTGCC 59.778 63.158 0.00 0.00 43.38 5.01
4621 7219 0.107945 CAGAAGAGGGTAGCAGGTGC 60.108 60.000 0.00 0.00 42.49 5.01
4622 7220 0.107945 GCAGAAGAGGGTAGCAGGTG 60.108 60.000 0.00 0.00 0.00 4.00
4623 7221 0.545309 TGCAGAAGAGGGTAGCAGGT 60.545 55.000 0.00 0.00 0.00 4.00
4624 7222 0.107945 GTGCAGAAGAGGGTAGCAGG 60.108 60.000 0.00 0.00 35.66 4.85
4625 7223 0.107945 GGTGCAGAAGAGGGTAGCAG 60.108 60.000 0.00 0.00 35.66 4.24
4626 7224 1.553690 GGGTGCAGAAGAGGGTAGCA 61.554 60.000 0.00 0.00 0.00 3.49
4627 7225 1.222113 GGGTGCAGAAGAGGGTAGC 59.778 63.158 0.00 0.00 0.00 3.58
4628 7226 1.627297 GGGGGTGCAGAAGAGGGTAG 61.627 65.000 0.00 0.00 0.00 3.18
4629 7227 1.615424 GGGGGTGCAGAAGAGGGTA 60.615 63.158 0.00 0.00 0.00 3.69
4630 7228 2.936032 GGGGGTGCAGAAGAGGGT 60.936 66.667 0.00 0.00 0.00 4.34
4631 7229 2.203549 GAAGGGGGTGCAGAAGAGGG 62.204 65.000 0.00 0.00 0.00 4.30
4632 7230 1.301293 GAAGGGGGTGCAGAAGAGG 59.699 63.158 0.00 0.00 0.00 3.69
4633 7231 0.322008 GTGAAGGGGGTGCAGAAGAG 60.322 60.000 0.00 0.00 0.00 2.85
4634 7232 1.761174 GTGAAGGGGGTGCAGAAGA 59.239 57.895 0.00 0.00 0.00 2.87
4635 7233 1.303643 GGTGAAGGGGGTGCAGAAG 60.304 63.158 0.00 0.00 0.00 2.85
4660 7258 4.202430 GGGAAGAAACAACCTCCTTGTCTA 60.202 45.833 0.00 0.00 42.70 2.59
4678 7276 0.914417 TCTTAGGGTGCAGGGGGAAG 60.914 60.000 0.00 0.00 0.00 3.46
4687 7285 3.821600 TGATCTCGTCTATCTTAGGGTGC 59.178 47.826 0.00 0.00 0.00 5.01
4690 7288 5.536916 AGGTTTGATCTCGTCTATCTTAGGG 59.463 44.000 0.00 0.00 0.00 3.53
4691 7289 6.442952 CAGGTTTGATCTCGTCTATCTTAGG 58.557 44.000 0.00 0.00 0.00 2.69
4692 7290 5.918011 GCAGGTTTGATCTCGTCTATCTTAG 59.082 44.000 0.00 0.00 0.00 2.18
4693 7291 5.221263 GGCAGGTTTGATCTCGTCTATCTTA 60.221 44.000 0.00 0.00 0.00 2.10
4694 7292 4.442192 GGCAGGTTTGATCTCGTCTATCTT 60.442 45.833 0.00 0.00 0.00 2.40
4695 7293 3.068873 GGCAGGTTTGATCTCGTCTATCT 59.931 47.826 0.00 0.00 0.00 1.98
4696 7294 3.068873 AGGCAGGTTTGATCTCGTCTATC 59.931 47.826 0.00 0.00 0.00 2.08
4732 7330 6.972328 CGATTTGTTGGAGAAGAAAGAAACAA 59.028 34.615 0.00 0.00 36.15 2.83
4759 7357 4.298332 CCTGAAAACGAAATTTGGGTGAG 58.702 43.478 5.14 0.00 0.00 3.51
4761 7359 2.799978 GCCTGAAAACGAAATTTGGGTG 59.200 45.455 5.14 0.00 0.00 4.61
4769 7367 0.941542 CCAGTCGCCTGAAAACGAAA 59.058 50.000 0.00 0.00 41.50 3.46
4771 7369 1.959226 GCCAGTCGCCTGAAAACGA 60.959 57.895 0.00 0.00 41.50 3.85
4788 7386 2.766970 TTTCCAGTTTAGTTGCACGC 57.233 45.000 0.00 0.00 0.00 5.34
4789 7387 4.022464 TGTTTTCCAGTTTAGTTGCACG 57.978 40.909 0.00 0.00 0.00 5.34
4790 7388 5.629435 GCTATGTTTTCCAGTTTAGTTGCAC 59.371 40.000 0.00 0.00 0.00 4.57
4791 7389 5.561919 CGCTATGTTTTCCAGTTTAGTTGCA 60.562 40.000 0.00 0.00 0.00 4.08
4792 7390 4.851558 CGCTATGTTTTCCAGTTTAGTTGC 59.148 41.667 0.00 0.00 0.00 4.17
4793 7391 4.851558 GCGCTATGTTTTCCAGTTTAGTTG 59.148 41.667 0.00 0.00 0.00 3.16
4794 7392 4.517453 TGCGCTATGTTTTCCAGTTTAGTT 59.483 37.500 9.73 0.00 0.00 2.24
4795 7393 4.069304 TGCGCTATGTTTTCCAGTTTAGT 58.931 39.130 9.73 0.00 0.00 2.24
4796 7394 4.154195 AGTGCGCTATGTTTTCCAGTTTAG 59.846 41.667 9.73 0.00 0.00 1.85
4797 7395 4.069304 AGTGCGCTATGTTTTCCAGTTTA 58.931 39.130 9.73 0.00 0.00 2.01
4798 7396 2.884639 AGTGCGCTATGTTTTCCAGTTT 59.115 40.909 9.73 0.00 0.00 2.66
4799 7397 2.504367 AGTGCGCTATGTTTTCCAGTT 58.496 42.857 9.73 0.00 0.00 3.16
4800 7398 2.185004 AGTGCGCTATGTTTTCCAGT 57.815 45.000 9.73 0.00 0.00 4.00
4801 7399 2.855180 CAAGTGCGCTATGTTTTCCAG 58.145 47.619 9.73 0.00 0.00 3.86
4802 7400 1.068610 GCAAGTGCGCTATGTTTTCCA 60.069 47.619 9.73 0.00 0.00 3.53
4803 7401 1.617740 GCAAGTGCGCTATGTTTTCC 58.382 50.000 9.73 0.00 0.00 3.13
4804 7402 1.068610 TGGCAAGTGCGCTATGTTTTC 60.069 47.619 9.73 0.00 43.26 2.29
4805 7403 0.958091 TGGCAAGTGCGCTATGTTTT 59.042 45.000 9.73 0.00 43.26 2.43
4806 7404 1.176527 ATGGCAAGTGCGCTATGTTT 58.823 45.000 9.73 0.00 43.26 2.83
4807 7405 1.176527 AATGGCAAGTGCGCTATGTT 58.823 45.000 9.73 0.00 43.26 2.71
4808 7406 1.670811 GTAATGGCAAGTGCGCTATGT 59.329 47.619 9.73 0.00 43.26 2.29
4809 7407 1.670295 TGTAATGGCAAGTGCGCTATG 59.330 47.619 9.73 6.10 43.26 2.23
4810 7408 1.670811 GTGTAATGGCAAGTGCGCTAT 59.329 47.619 9.73 0.00 43.26 2.97
4811 7409 1.083489 GTGTAATGGCAAGTGCGCTA 58.917 50.000 9.73 0.00 43.26 4.26
4812 7410 0.606401 AGTGTAATGGCAAGTGCGCT 60.606 50.000 9.73 0.00 43.26 5.92
4813 7411 1.062587 CTAGTGTAATGGCAAGTGCGC 59.937 52.381 0.00 0.00 43.26 6.09
4814 7412 1.665679 CCTAGTGTAATGGCAAGTGCG 59.334 52.381 0.00 0.00 43.26 5.34
4815 7413 2.985896 TCCTAGTGTAATGGCAAGTGC 58.014 47.619 0.00 0.00 41.14 4.40
4816 7414 3.375299 GCTTCCTAGTGTAATGGCAAGTG 59.625 47.826 0.00 0.00 0.00 3.16
4817 7415 3.264450 AGCTTCCTAGTGTAATGGCAAGT 59.736 43.478 0.00 0.00 0.00 3.16
4818 7416 3.878778 AGCTTCCTAGTGTAATGGCAAG 58.121 45.455 0.00 0.00 0.00 4.01
4819 7417 4.301072 AAGCTTCCTAGTGTAATGGCAA 57.699 40.909 0.00 0.00 0.00 4.52
4820 7418 4.019321 AGAAAGCTTCCTAGTGTAATGGCA 60.019 41.667 0.00 0.00 0.00 4.92
4821 7419 4.518249 AGAAAGCTTCCTAGTGTAATGGC 58.482 43.478 0.00 0.00 0.00 4.40
4822 7420 5.734720 TGAGAAAGCTTCCTAGTGTAATGG 58.265 41.667 0.00 0.00 0.00 3.16
4823 7421 6.314896 CCTTGAGAAAGCTTCCTAGTGTAATG 59.685 42.308 0.00 0.00 0.00 1.90
4824 7422 6.213600 TCCTTGAGAAAGCTTCCTAGTGTAAT 59.786 38.462 0.00 0.00 0.00 1.89
4825 7423 5.542635 TCCTTGAGAAAGCTTCCTAGTGTAA 59.457 40.000 0.00 0.00 0.00 2.41
4826 7424 5.084519 TCCTTGAGAAAGCTTCCTAGTGTA 58.915 41.667 0.00 0.00 0.00 2.90
4827 7425 3.904339 TCCTTGAGAAAGCTTCCTAGTGT 59.096 43.478 0.00 0.00 0.00 3.55
4828 7426 4.543590 TCCTTGAGAAAGCTTCCTAGTG 57.456 45.455 0.00 0.00 0.00 2.74
4829 7427 6.875972 TTATCCTTGAGAAAGCTTCCTAGT 57.124 37.500 0.00 0.00 0.00 2.57
4830 7428 8.567285 TTTTTATCCTTGAGAAAGCTTCCTAG 57.433 34.615 0.00 0.00 0.00 3.02
4831 7429 8.960591 CATTTTTATCCTTGAGAAAGCTTCCTA 58.039 33.333 0.00 0.00 0.00 2.94
4832 7430 7.578380 GCATTTTTATCCTTGAGAAAGCTTCCT 60.578 37.037 0.00 0.00 0.00 3.36
4833 7431 6.533012 GCATTTTTATCCTTGAGAAAGCTTCC 59.467 38.462 0.00 0.00 0.00 3.46
4834 7432 7.318893 AGCATTTTTATCCTTGAGAAAGCTTC 58.681 34.615 0.00 0.00 0.00 3.86
4835 7433 7.237209 AGCATTTTTATCCTTGAGAAAGCTT 57.763 32.000 0.00 0.00 0.00 3.74
4836 7434 6.847421 AGCATTTTTATCCTTGAGAAAGCT 57.153 33.333 0.00 0.00 0.00 3.74
4837 7435 8.864024 GTTTAGCATTTTTATCCTTGAGAAAGC 58.136 33.333 0.00 0.00 0.00 3.51
4838 7436 9.065871 CGTTTAGCATTTTTATCCTTGAGAAAG 57.934 33.333 0.00 0.00 0.00 2.62
4839 7437 8.964420 CGTTTAGCATTTTTATCCTTGAGAAA 57.036 30.769 0.00 0.00 0.00 2.52
4858 7456 0.664224 AACAAACCCCGTGCGTTTAG 59.336 50.000 0.00 0.00 32.27 1.85
4859 7457 1.601430 GTAACAAACCCCGTGCGTTTA 59.399 47.619 0.00 0.00 32.27 2.01
4860 7458 0.381445 GTAACAAACCCCGTGCGTTT 59.619 50.000 0.00 0.00 33.75 3.60
4861 7459 0.747283 TGTAACAAACCCCGTGCGTT 60.747 50.000 0.00 0.00 0.00 4.84
4862 7460 1.153208 TGTAACAAACCCCGTGCGT 60.153 52.632 0.00 0.00 0.00 5.24
4863 7461 1.572447 CTGTAACAAACCCCGTGCG 59.428 57.895 0.00 0.00 0.00 5.34
4864 7462 0.535553 TCCTGTAACAAACCCCGTGC 60.536 55.000 0.00 0.00 0.00 5.34
4865 7463 1.202722 AGTCCTGTAACAAACCCCGTG 60.203 52.381 0.00 0.00 0.00 4.94
4866 7464 1.134228 AGTCCTGTAACAAACCCCGT 58.866 50.000 0.00 0.00 0.00 5.28
4867 7465 3.622166 ATAGTCCTGTAACAAACCCCG 57.378 47.619 0.00 0.00 0.00 5.73
4868 7466 5.826208 CCATAATAGTCCTGTAACAAACCCC 59.174 44.000 0.00 0.00 0.00 4.95
4869 7467 5.826208 CCCATAATAGTCCTGTAACAAACCC 59.174 44.000 0.00 0.00 0.00 4.11
4870 7468 6.541278 GTCCCATAATAGTCCTGTAACAAACC 59.459 42.308 0.00 0.00 0.00 3.27
4871 7469 6.257193 CGTCCCATAATAGTCCTGTAACAAAC 59.743 42.308 0.00 0.00 0.00 2.93
4872 7470 6.070653 ACGTCCCATAATAGTCCTGTAACAAA 60.071 38.462 0.00 0.00 0.00 2.83
4873 7471 5.422970 ACGTCCCATAATAGTCCTGTAACAA 59.577 40.000 0.00 0.00 0.00 2.83
4874 7472 4.957954 ACGTCCCATAATAGTCCTGTAACA 59.042 41.667 0.00 0.00 0.00 2.41
4875 7473 5.526506 ACGTCCCATAATAGTCCTGTAAC 57.473 43.478 0.00 0.00 0.00 2.50
4876 7474 5.069516 GGAACGTCCCATAATAGTCCTGTAA 59.930 44.000 0.00 0.00 0.00 2.41
4877 7475 4.586001 GGAACGTCCCATAATAGTCCTGTA 59.414 45.833 0.00 0.00 0.00 2.74
4878 7476 3.387050 GGAACGTCCCATAATAGTCCTGT 59.613 47.826 0.00 0.00 0.00 4.00
4879 7477 3.386726 TGGAACGTCCCATAATAGTCCTG 59.613 47.826 0.00 0.00 35.03 3.86
4880 7478 3.649843 TGGAACGTCCCATAATAGTCCT 58.350 45.455 0.00 0.00 35.03 3.85
4881 7479 4.411256 TTGGAACGTCCCATAATAGTCC 57.589 45.455 0.00 0.00 35.03 3.85
4882 7480 8.617290 AATTATTGGAACGTCCCATAATAGTC 57.383 34.615 16.49 0.00 41.37 2.59
4883 7481 8.437575 AGAATTATTGGAACGTCCCATAATAGT 58.562 33.333 16.49 1.07 41.37 2.12
4884 7482 8.848474 AGAATTATTGGAACGTCCCATAATAG 57.152 34.615 16.49 0.00 41.37 1.73
4885 7483 7.881232 GGAGAATTATTGGAACGTCCCATAATA 59.119 37.037 16.49 3.40 41.37 0.98
4886 7484 6.715264 GGAGAATTATTGGAACGTCCCATAAT 59.285 38.462 0.00 6.02 42.99 1.28
4887 7485 6.059484 GGAGAATTATTGGAACGTCCCATAA 58.941 40.000 0.00 3.88 38.16 1.90
4888 7486 5.131308 TGGAGAATTATTGGAACGTCCCATA 59.869 40.000 0.00 0.00 35.03 2.74
4889 7487 4.080015 TGGAGAATTATTGGAACGTCCCAT 60.080 41.667 0.00 0.00 35.03 4.00
4890 7488 3.264706 TGGAGAATTATTGGAACGTCCCA 59.735 43.478 0.00 0.00 35.03 4.37
4891 7489 3.626217 GTGGAGAATTATTGGAACGTCCC 59.374 47.826 0.00 0.00 35.03 4.46
4892 7490 3.626217 GGTGGAGAATTATTGGAACGTCC 59.374 47.826 0.00 0.00 36.96 4.79
4893 7491 3.626217 GGGTGGAGAATTATTGGAACGTC 59.374 47.826 0.00 0.00 0.00 4.34
4894 7492 3.617284 GGGTGGAGAATTATTGGAACGT 58.383 45.455 0.00 0.00 0.00 3.99
4895 7493 2.949644 GGGGTGGAGAATTATTGGAACG 59.050 50.000 0.00 0.00 0.00 3.95
4896 7494 3.976015 TGGGGTGGAGAATTATTGGAAC 58.024 45.455 0.00 0.00 0.00 3.62
4897 7495 4.349365 GTTGGGGTGGAGAATTATTGGAA 58.651 43.478 0.00 0.00 0.00 3.53
4898 7496 3.309556 GGTTGGGGTGGAGAATTATTGGA 60.310 47.826 0.00 0.00 0.00 3.53
4899 7497 3.031013 GGTTGGGGTGGAGAATTATTGG 58.969 50.000 0.00 0.00 0.00 3.16
4900 7498 3.447229 GTGGTTGGGGTGGAGAATTATTG 59.553 47.826 0.00 0.00 0.00 1.90
4901 7499 3.565670 GGTGGTTGGGGTGGAGAATTATT 60.566 47.826 0.00 0.00 0.00 1.40
4902 7500 2.024369 GGTGGTTGGGGTGGAGAATTAT 60.024 50.000 0.00 0.00 0.00 1.28
4903 7501 1.356398 GGTGGTTGGGGTGGAGAATTA 59.644 52.381 0.00 0.00 0.00 1.40
4904 7502 0.114364 GGTGGTTGGGGTGGAGAATT 59.886 55.000 0.00 0.00 0.00 2.17
4905 7503 1.774300 GGTGGTTGGGGTGGAGAAT 59.226 57.895 0.00 0.00 0.00 2.40
4906 7504 2.824880 CGGTGGTTGGGGTGGAGAA 61.825 63.158 0.00 0.00 0.00 2.87
4907 7505 3.246112 CGGTGGTTGGGGTGGAGA 61.246 66.667 0.00 0.00 0.00 3.71
4908 7506 4.344865 CCGGTGGTTGGGGTGGAG 62.345 72.222 0.00 0.00 0.00 3.86
4909 7507 4.902258 TCCGGTGGTTGGGGTGGA 62.902 66.667 0.00 0.00 0.00 4.02
4910 7508 2.723464 AATTCCGGTGGTTGGGGTGG 62.723 60.000 0.00 0.00 0.00 4.61
4911 7509 0.038455 TAATTCCGGTGGTTGGGGTG 59.962 55.000 0.00 0.00 0.00 4.61
4912 7510 0.038599 GTAATTCCGGTGGTTGGGGT 59.961 55.000 0.00 0.00 0.00 4.95
4913 7511 0.038455 TGTAATTCCGGTGGTTGGGG 59.962 55.000 0.00 0.00 0.00 4.96
4914 7512 1.170442 GTGTAATTCCGGTGGTTGGG 58.830 55.000 0.00 0.00 0.00 4.12
4915 7513 1.810151 CTGTGTAATTCCGGTGGTTGG 59.190 52.381 0.00 0.00 0.00 3.77
4916 7514 2.742053 CTCTGTGTAATTCCGGTGGTTG 59.258 50.000 0.00 0.00 0.00 3.77
4917 7515 2.290071 CCTCTGTGTAATTCCGGTGGTT 60.290 50.000 0.00 0.00 0.00 3.67
4918 7516 1.278127 CCTCTGTGTAATTCCGGTGGT 59.722 52.381 0.00 0.00 0.00 4.16
4919 7517 1.278127 ACCTCTGTGTAATTCCGGTGG 59.722 52.381 0.00 0.00 0.00 4.61
4920 7518 2.762535 ACCTCTGTGTAATTCCGGTG 57.237 50.000 0.00 0.00 0.00 4.94
4921 7519 2.764572 CCTACCTCTGTGTAATTCCGGT 59.235 50.000 0.00 0.00 0.00 5.28
4922 7520 2.102588 CCCTACCTCTGTGTAATTCCGG 59.897 54.545 0.00 0.00 0.00 5.14
4923 7521 2.764572 ACCCTACCTCTGTGTAATTCCG 59.235 50.000 0.00 0.00 0.00 4.30
4924 7522 3.134262 GGACCCTACCTCTGTGTAATTCC 59.866 52.174 0.00 0.00 0.00 3.01
4925 7523 3.134262 GGGACCCTACCTCTGTGTAATTC 59.866 52.174 2.09 0.00 0.00 2.17
4926 7524 3.113043 GGGACCCTACCTCTGTGTAATT 58.887 50.000 2.09 0.00 0.00 1.40
4927 7525 2.318207 AGGGACCCTACCTCTGTGTAAT 59.682 50.000 12.85 0.00 31.01 1.89
4928 7526 1.720533 AGGGACCCTACCTCTGTGTAA 59.279 52.381 12.85 0.00 31.01 2.41
4929 7527 1.390287 AGGGACCCTACCTCTGTGTA 58.610 55.000 12.85 0.00 31.01 2.90
4930 7528 0.492276 AAGGGACCCTACCTCTGTGT 59.508 55.000 15.29 0.00 37.35 3.72
4931 7529 1.196012 GAAGGGACCCTACCTCTGTG 58.804 60.000 15.29 0.00 37.35 3.66
4932 7530 0.790993 TGAAGGGACCCTACCTCTGT 59.209 55.000 15.29 0.00 37.35 3.41
4933 7531 1.555533 GTTGAAGGGACCCTACCTCTG 59.444 57.143 15.29 0.00 37.35 3.35
4934 7532 1.555058 GGTTGAAGGGACCCTACCTCT 60.555 57.143 20.13 2.53 37.35 3.69
4935 7533 0.910338 GGTTGAAGGGACCCTACCTC 59.090 60.000 20.13 12.69 37.35 3.85
4936 7534 3.100039 GGTTGAAGGGACCCTACCT 57.900 57.895 20.13 3.30 40.96 3.08
4942 7540 2.911552 TTAATGGGGTTGAAGGGACC 57.088 50.000 0.00 0.00 36.41 4.46
4943 7541 3.296854 GGATTAATGGGGTTGAAGGGAC 58.703 50.000 0.00 0.00 0.00 4.46
4944 7542 2.929724 TGGATTAATGGGGTTGAAGGGA 59.070 45.455 0.00 0.00 0.00 4.20
4945 7543 3.396685 TGGATTAATGGGGTTGAAGGG 57.603 47.619 0.00 0.00 0.00 3.95
4946 7544 7.430760 TTTATTGGATTAATGGGGTTGAAGG 57.569 36.000 0.00 0.00 0.00 3.46
4969 7567 3.320541 TGATCGTGACCTGGCAAATTTTT 59.679 39.130 0.00 0.00 0.00 1.94
4970 7568 2.890311 TGATCGTGACCTGGCAAATTTT 59.110 40.909 0.00 0.00 0.00 1.82
4971 7569 2.513753 TGATCGTGACCTGGCAAATTT 58.486 42.857 0.00 0.00 0.00 1.82
4972 7570 2.198827 TGATCGTGACCTGGCAAATT 57.801 45.000 0.00 0.00 0.00 1.82
4973 7571 2.198827 TTGATCGTGACCTGGCAAAT 57.801 45.000 0.00 0.00 0.00 2.32
4974 7572 1.606668 GTTTGATCGTGACCTGGCAAA 59.393 47.619 0.00 0.00 0.00 3.68
4975 7573 1.234821 GTTTGATCGTGACCTGGCAA 58.765 50.000 0.00 0.00 0.00 4.52
4976 7574 0.605319 GGTTTGATCGTGACCTGGCA 60.605 55.000 0.00 0.00 0.00 4.92
4977 7575 0.321653 AGGTTTGATCGTGACCTGGC 60.322 55.000 12.18 0.00 42.04 4.85
4978 7576 2.185004 AAGGTTTGATCGTGACCTGG 57.815 50.000 13.32 0.00 42.78 4.45
4979 7577 4.152402 CACTTAAGGTTTGATCGTGACCTG 59.848 45.833 13.32 5.98 42.78 4.00
4980 7578 4.202326 ACACTTAAGGTTTGATCGTGACCT 60.202 41.667 7.53 8.26 45.42 3.85
4981 7579 4.062991 ACACTTAAGGTTTGATCGTGACC 58.937 43.478 7.53 4.31 0.00 4.02
4982 7580 5.235616 TCAACACTTAAGGTTTGATCGTGAC 59.764 40.000 14.03 0.00 0.00 3.67
4983 7581 5.361427 TCAACACTTAAGGTTTGATCGTGA 58.639 37.500 14.03 3.79 0.00 4.35
4984 7582 5.666969 TCAACACTTAAGGTTTGATCGTG 57.333 39.130 14.03 1.66 0.00 4.35
4985 7583 5.763204 ACATCAACACTTAAGGTTTGATCGT 59.237 36.000 21.96 19.81 35.55 3.73
4986 7584 6.079763 CACATCAACACTTAAGGTTTGATCG 58.920 40.000 21.96 19.41 35.55 3.69
4987 7585 6.381801 CCACATCAACACTTAAGGTTTGATC 58.618 40.000 21.96 0.00 35.55 2.92
4988 7586 5.278957 GCCACATCAACACTTAAGGTTTGAT 60.279 40.000 20.25 20.25 36.78 2.57
4989 7587 4.037446 GCCACATCAACACTTAAGGTTTGA 59.963 41.667 18.21 18.21 33.29 2.69
4990 7588 4.202101 TGCCACATCAACACTTAAGGTTTG 60.202 41.667 7.53 9.38 0.00 2.93
4991 7589 3.957497 TGCCACATCAACACTTAAGGTTT 59.043 39.130 7.53 0.00 0.00 3.27
4992 7590 3.317993 GTGCCACATCAACACTTAAGGTT 59.682 43.478 7.53 5.55 0.00 3.50
4993 7591 2.884639 GTGCCACATCAACACTTAAGGT 59.115 45.455 7.53 0.00 0.00 3.50
4994 7592 3.149196 AGTGCCACATCAACACTTAAGG 58.851 45.455 7.53 0.00 41.78 2.69
4995 7593 6.317088 CAATAGTGCCACATCAACACTTAAG 58.683 40.000 0.00 0.00 41.78 1.85
4996 7594 5.335583 GCAATAGTGCCACATCAACACTTAA 60.336 40.000 3.16 0.00 45.68 1.85
4997 7595 4.155826 GCAATAGTGCCACATCAACACTTA 59.844 41.667 3.16 0.00 45.68 2.24
4998 7596 3.057315 GCAATAGTGCCACATCAACACTT 60.057 43.478 3.16 0.00 45.68 3.16
4999 7597 2.489329 GCAATAGTGCCACATCAACACT 59.511 45.455 3.16 0.00 45.68 3.55
5000 7598 2.867429 GCAATAGTGCCACATCAACAC 58.133 47.619 3.16 0.00 45.68 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.