Multiple sequence alignment - TraesCS6D01G330500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G330500 chr6D 100.000 8458 0 0 1 8458 433716288 433707831 0.000000e+00 15620.0
1 TraesCS6D01G330500 chr6D 87.463 1667 195 9 4615 6278 433940047 433938392 0.000000e+00 1908.0
2 TraesCS6D01G330500 chr6D 86.266 1165 143 8 6285 7446 433938355 433937205 0.000000e+00 1249.0
3 TraesCS6D01G330500 chr6D 97.138 559 14 1 43 599 364851382 364851940 0.000000e+00 942.0
4 TraesCS6D01G330500 chr6D 96.948 557 11 3 48 602 81584645 81585197 0.000000e+00 929.0
5 TraesCS6D01G330500 chr6D 83.172 517 73 11 7925 8428 87504791 87504276 2.150000e-125 460.0
6 TraesCS6D01G330500 chr6D 87.921 356 25 9 987 1339 433942654 433942314 3.680000e-108 403.0
7 TraesCS6D01G330500 chr6D 89.080 174 19 0 7716 7889 362216135 362216308 5.140000e-52 217.0
8 TraesCS6D01G330500 chr6B 93.395 3043 174 12 4598 7638 655867986 655871003 0.000000e+00 4481.0
9 TraesCS6D01G330500 chr6B 88.099 2899 283 34 4587 7463 655889417 655892275 0.000000e+00 3386.0
10 TraesCS6D01G330500 chr6B 86.650 2869 344 25 4586 7446 656284036 656281199 0.000000e+00 3140.0
11 TraesCS6D01G330500 chr6B 90.650 2214 104 37 645 2806 655862649 655864811 0.000000e+00 2846.0
12 TraesCS6D01G330500 chr6B 94.431 1688 71 3 4604 6288 655311729 655313396 0.000000e+00 2575.0
13 TraesCS6D01G330500 chr6B 91.215 1457 110 10 6285 7735 655313663 655315107 0.000000e+00 1965.0
14 TraesCS6D01G330500 chr6B 87.441 1696 172 16 5401 7085 655763426 655765091 0.000000e+00 1914.0
15 TraesCS6D01G330500 chr6B 85.660 1053 74 25 3178 4189 655864805 655865821 0.000000e+00 1037.0
16 TraesCS6D01G330500 chr6B 84.940 1089 84 34 2008 3050 655302298 655303352 0.000000e+00 1029.0
17 TraesCS6D01G330500 chr6B 88.665 794 80 5 4606 5399 655757332 655758115 0.000000e+00 959.0
18 TraesCS6D01G330500 chr6B 84.325 874 52 34 597 1444 655299815 655300629 0.000000e+00 776.0
19 TraesCS6D01G330500 chr6B 84.274 833 75 36 3576 4376 655310078 655310886 0.000000e+00 761.0
20 TraesCS6D01G330500 chr6B 84.218 735 85 17 7728 8458 655327673 655328380 0.000000e+00 686.0
21 TraesCS6D01G330500 chr6B 84.903 722 56 22 838 1538 655887846 655888535 0.000000e+00 680.0
22 TraesCS6D01G330500 chr6B 86.496 585 39 24 952 1517 655752964 655753527 2.610000e-169 606.0
23 TraesCS6D01G330500 chr6B 86.406 537 71 2 7922 8457 655878817 655879352 3.400000e-163 586.0
24 TraesCS6D01G330500 chr6B 90.000 370 31 3 976 1339 656286228 656285859 2.760000e-129 473.0
25 TraesCS6D01G330500 chr6B 88.480 408 24 6 3054 3458 655303921 655304308 9.940000e-129 472.0
26 TraesCS6D01G330500 chr6B 89.902 307 24 3 3510 3816 655307089 655307388 1.030000e-103 388.0
27 TraesCS6D01G330500 chr6B 85.567 194 26 2 7710 7902 153363353 153363545 1.440000e-47 202.0
28 TraesCS6D01G330500 chr6B 87.755 98 8 3 2844 2939 54896539 54896634 2.500000e-20 111.0
29 TraesCS6D01G330500 chr6B 87.097 93 10 2 2114 2204 711879917 711880009 4.180000e-18 104.0
30 TraesCS6D01G330500 chr6A 89.156 2868 261 30 4626 7467 579842031 579844874 0.000000e+00 3528.0
31 TraesCS6D01G330500 chr6A 86.148 2866 361 19 4590 7444 580206322 580203482 0.000000e+00 3061.0
32 TraesCS6D01G330500 chr6A 85.155 613 50 22 841 1431 579838966 579839559 2.630000e-164 590.0
33 TraesCS6D01G330500 chr6A 85.301 449 40 15 898 1343 580213139 580212714 2.800000e-119 440.0
34 TraesCS6D01G330500 chr6A 93.478 46 2 1 7615 7659 41606154 41606109 5.480000e-07 67.6
35 TraesCS6D01G330500 chr1D 96.569 612 15 3 1 607 225561220 225561830 0.000000e+00 1009.0
36 TraesCS6D01G330500 chr1D 78.338 337 48 15 1582 1902 9357609 9357282 2.410000e-45 195.0
37 TraesCS6D01G330500 chr1D 82.031 128 17 6 2088 2210 203468055 203468181 4.180000e-18 104.0
38 TraesCS6D01G330500 chr4D 97.495 519 11 1 80 596 349984998 349984480 0.000000e+00 885.0
39 TraesCS6D01G330500 chr3D 96.169 522 18 1 78 597 289030167 289030688 0.000000e+00 852.0
40 TraesCS6D01G330500 chr3D 82.625 518 76 9 7923 8428 48966371 48965856 6.020000e-121 446.0
41 TraesCS6D01G330500 chr3D 77.391 115 24 2 7466 7580 570842360 570842472 5.480000e-07 67.6
42 TraesCS6D01G330500 chr7D 92.939 524 10 2 79 600 26557814 26557316 0.000000e+00 737.0
43 TraesCS6D01G330500 chr7D 98.266 346 5 1 1 346 220291140 220290796 9.390000e-169 604.0
44 TraesCS6D01G330500 chr7D 82.659 519 77 9 7922 8428 576240223 576240740 1.670000e-121 448.0
45 TraesCS6D01G330500 chr7D 96.923 260 6 1 340 597 220290859 220290600 1.300000e-117 435.0
46 TraesCS6D01G330500 chr7D 86.275 204 23 5 7700 7902 203945175 203945374 5.140000e-52 217.0
47 TraesCS6D01G330500 chr7D 86.170 188 24 2 7716 7902 4146299 4146485 1.440000e-47 202.0
48 TraesCS6D01G330500 chr7D 83.582 134 20 2 1583 1714 634413768 634413635 3.210000e-24 124.0
49 TraesCS6D01G330500 chr7D 82.394 142 18 6 7469 7606 543564884 543564746 5.360000e-22 117.0
50 TraesCS6D01G330500 chr7D 83.178 107 14 4 2107 2210 577916900 577917005 2.510000e-15 95.3
51 TraesCS6D01G330500 chr7D 83.019 106 12 6 2108 2210 29728502 29728604 3.250000e-14 91.6
52 TraesCS6D01G330500 chr7D 81.651 109 13 7 2103 2208 27238833 27238729 5.440000e-12 84.2
53 TraesCS6D01G330500 chr5D 98.297 411 5 1 56 464 507570952 507571362 0.000000e+00 719.0
54 TraesCS6D01G330500 chr5D 82.466 519 77 10 7922 8428 246018910 246019426 7.790000e-120 442.0
55 TraesCS6D01G330500 chr5D 90.184 163 11 5 4430 4592 457259040 457259197 3.090000e-49 207.0
56 TraesCS6D01G330500 chr5D 77.500 200 28 14 2847 3036 494609739 494609547 4.180000e-18 104.0
57 TraesCS6D01G330500 chr2D 96.243 346 11 2 1 345 568722897 568722553 4.430000e-157 566.0
58 TraesCS6D01G330500 chr2D 82.885 520 74 11 7922 8428 103075125 103074608 3.600000e-123 453.0
59 TraesCS6D01G330500 chr2D 84.859 284 38 5 1583 1862 481966737 481966455 1.800000e-71 281.0
60 TraesCS6D01G330500 chr2B 96.254 347 10 3 1 346 75698274 75698618 4.430000e-157 566.0
61 TraesCS6D01G330500 chr2B 78.302 742 121 21 7716 8428 206763701 206762971 7.790000e-120 442.0
62 TraesCS6D01G330500 chr2B 94.697 264 11 2 340 601 52529252 52528990 2.840000e-109 407.0
63 TraesCS6D01G330500 chr2B 93.939 264 12 3 340 601 75698555 75698816 6.150000e-106 396.0
64 TraesCS6D01G330500 chr2B 84.281 299 46 1 5980 6277 680805034 680804736 2.990000e-74 291.0
65 TraesCS6D01G330500 chr2B 82.332 283 37 10 1583 1861 768373906 768373633 5.100000e-57 233.0
66 TraesCS6D01G330500 chr2B 87.978 183 22 0 7720 7902 97102967 97103149 5.140000e-52 217.0
67 TraesCS6D01G330500 chr2B 87.166 187 23 1 7716 7902 135239091 135239276 2.390000e-50 211.0
68 TraesCS6D01G330500 chr2B 86.538 52 6 1 4321 4371 793437983 793438034 1.000000e-03 56.5
69 TraesCS6D01G330500 chr2B 100.000 29 0 0 1912 1940 658489537 658489509 4.000000e-03 54.7
70 TraesCS6D01G330500 chr4A 82.692 520 74 12 7922 8428 604912262 604912778 1.670000e-121 448.0
71 TraesCS6D01G330500 chr2A 82.659 519 76 9 7922 8428 25342083 25342599 1.670000e-121 448.0
72 TraesCS6D01G330500 chr2A 80.547 329 41 10 1586 1902 389549722 389549405 1.840000e-56 231.0
73 TraesCS6D01G330500 chr2A 93.662 142 9 0 4443 4584 710966244 710966103 6.650000e-51 213.0
74 TraesCS6D01G330500 chr2A 82.917 240 29 5 1624 1862 389549343 389549115 1.110000e-48 206.0
75 TraesCS6D01G330500 chr4B 83.735 332 40 9 1583 1902 671670325 671670654 1.380000e-77 302.0
76 TraesCS6D01G330500 chr4B 86.702 188 24 1 7715 7902 607846582 607846396 3.090000e-49 207.0
77 TraesCS6D01G330500 chr4B 80.142 141 25 3 7466 7606 506927030 506927167 1.500000e-17 102.0
78 TraesCS6D01G330500 chr7B 83.183 333 42 10 1583 1902 666689339 666689008 8.300000e-75 292.0
79 TraesCS6D01G330500 chr7B 79.310 145 20 7 7465 7606 62060908 62061045 9.040000e-15 93.5
80 TraesCS6D01G330500 chr7B 81.818 110 16 4 2103 2210 663742281 663742388 1.170000e-13 89.8
81 TraesCS6D01G330500 chr7A 81.682 333 49 9 8088 8413 162090727 162090400 5.030000e-67 267.0
82 TraesCS6D01G330500 chr7A 81.979 283 47 4 1582 1862 228485788 228485508 3.950000e-58 237.0
83 TraesCS6D01G330500 chr7A 85.789 190 25 2 7716 7904 128790054 128789866 5.180000e-47 200.0
84 TraesCS6D01G330500 chr7A 84.252 127 20 0 6374 6500 107090629 107090503 3.210000e-24 124.0
85 TraesCS6D01G330500 chr3A 83.945 218 24 8 1586 1801 67577574 67577366 1.860000e-46 198.0
86 TraesCS6D01G330500 chr3A 78.448 116 24 1 7465 7580 703842007 703841893 3.270000e-09 75.0
87 TraesCS6D01G330500 chr3B 82.403 233 33 8 1676 1902 823589584 823589814 6.700000e-46 196.0
88 TraesCS6D01G330500 chr3B 84.024 169 12 8 1746 1902 782185270 782185435 1.900000e-31 148.0
89 TraesCS6D01G330500 chr3B 84.024 169 12 8 1746 1902 782226966 782227131 1.900000e-31 148.0
90 TraesCS6D01G330500 chr3B 83.333 96 15 1 2115 2209 252398982 252399077 4.210000e-13 87.9
91 TraesCS6D01G330500 chr1A 85.542 83 11 1 4323 4404 462292012 462292094 1.510000e-12 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G330500 chr6D 433707831 433716288 8457 True 15620.000000 15620 100.000000 1 8458 1 chr6D.!!$R2 8457
1 TraesCS6D01G330500 chr6D 433937205 433942654 5449 True 1186.666667 1908 87.216667 987 7446 3 chr6D.!!$R3 6459
2 TraesCS6D01G330500 chr6D 364851382 364851940 558 False 942.000000 942 97.138000 43 599 1 chr6D.!!$F3 556
3 TraesCS6D01G330500 chr6D 81584645 81585197 552 False 929.000000 929 96.948000 48 602 1 chr6D.!!$F1 554
4 TraesCS6D01G330500 chr6D 87504276 87504791 515 True 460.000000 460 83.172000 7925 8428 1 chr6D.!!$R1 503
5 TraesCS6D01G330500 chr6B 655862649 655871003 8354 False 2788.000000 4481 89.901667 645 7638 3 chr6B.!!$F9 6993
6 TraesCS6D01G330500 chr6B 655887846 655892275 4429 False 2033.000000 3386 86.501000 838 7463 2 chr6B.!!$F10 6625
7 TraesCS6D01G330500 chr6B 655763426 655765091 1665 False 1914.000000 1914 87.441000 5401 7085 1 chr6B.!!$F4 1684
8 TraesCS6D01G330500 chr6B 656281199 656286228 5029 True 1806.500000 3140 88.325000 976 7446 2 chr6B.!!$R1 6470
9 TraesCS6D01G330500 chr6B 655299815 655315107 15292 False 1138.000000 2575 88.223857 597 7735 7 chr6B.!!$F7 7138
10 TraesCS6D01G330500 chr6B 655752964 655758115 5151 False 782.500000 959 87.580500 952 5399 2 chr6B.!!$F8 4447
11 TraesCS6D01G330500 chr6B 655327673 655328380 707 False 686.000000 686 84.218000 7728 8458 1 chr6B.!!$F3 730
12 TraesCS6D01G330500 chr6B 655878817 655879352 535 False 586.000000 586 86.406000 7922 8457 1 chr6B.!!$F5 535
13 TraesCS6D01G330500 chr6A 580203482 580206322 2840 True 3061.000000 3061 86.148000 4590 7444 1 chr6A.!!$R2 2854
14 TraesCS6D01G330500 chr6A 579838966 579844874 5908 False 2059.000000 3528 87.155500 841 7467 2 chr6A.!!$F1 6626
15 TraesCS6D01G330500 chr1D 225561220 225561830 610 False 1009.000000 1009 96.569000 1 607 1 chr1D.!!$F2 606
16 TraesCS6D01G330500 chr4D 349984480 349984998 518 True 885.000000 885 97.495000 80 596 1 chr4D.!!$R1 516
17 TraesCS6D01G330500 chr3D 289030167 289030688 521 False 852.000000 852 96.169000 78 597 1 chr3D.!!$F1 519
18 TraesCS6D01G330500 chr3D 48965856 48966371 515 True 446.000000 446 82.625000 7923 8428 1 chr3D.!!$R1 505
19 TraesCS6D01G330500 chr7D 220290600 220291140 540 True 519.500000 604 97.594500 1 597 2 chr7D.!!$R5 596
20 TraesCS6D01G330500 chr7D 576240223 576240740 517 False 448.000000 448 82.659000 7922 8428 1 chr7D.!!$F4 506
21 TraesCS6D01G330500 chr5D 246018910 246019426 516 False 442.000000 442 82.466000 7922 8428 1 chr5D.!!$F1 506
22 TraesCS6D01G330500 chr2D 103074608 103075125 517 True 453.000000 453 82.885000 7922 8428 1 chr2D.!!$R1 506
23 TraesCS6D01G330500 chr2B 75698274 75698816 542 False 481.000000 566 95.096500 1 601 2 chr2B.!!$F4 600
24 TraesCS6D01G330500 chr2B 206762971 206763701 730 True 442.000000 442 78.302000 7716 8428 1 chr2B.!!$R2 712
25 TraesCS6D01G330500 chr4A 604912262 604912778 516 False 448.000000 448 82.692000 7922 8428 1 chr4A.!!$F1 506
26 TraesCS6D01G330500 chr2A 25342083 25342599 516 False 448.000000 448 82.659000 7922 8428 1 chr2A.!!$F1 506
27 TraesCS6D01G330500 chr2A 389549115 389549722 607 True 218.500000 231 81.732000 1586 1902 2 chr2A.!!$R2 316

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 105 0.037232 AAGAGGAGTTGCTGGTACGC 60.037 55.000 0.00 0.0 0.00 4.42 F
719 726 0.746923 TCGTCGATCGACATCCACCT 60.747 55.000 38.62 0.0 44.77 4.00 F
1053 1090 0.691413 CCCCCTCCTCCTTCTACACC 60.691 65.000 0.00 0.0 0.00 4.16 F
2294 4508 1.341976 ACTAATCCAACCCACATGGCC 60.342 52.381 0.00 0.0 37.88 5.36 F
3050 5391 0.037790 GAGAGAGTGGTGTGTCCTGC 60.038 60.000 0.00 0.0 37.07 4.85 F
4338 17085 0.035439 ATGGTTGCTAGGGGTTCACG 60.035 55.000 0.00 0.0 0.00 4.35 F
4528 17305 0.036732 TGGCTCGAGCAACCAAAGAT 59.963 50.000 36.27 0.0 44.36 2.40 F
4534 17311 0.169009 GAGCAACCAAAGATGTCGCC 59.831 55.000 0.00 0.0 0.00 5.54 F
4538 17315 0.400213 AACCAAAGATGTCGCCCAGA 59.600 50.000 0.00 0.0 0.00 3.86 F
4590 17691 0.610232 GAGCCTCCTTGTTGCCATGT 60.610 55.000 0.00 0.0 0.00 3.21 F
4594 17695 0.883833 CTCCTTGTTGCCATGTGGTC 59.116 55.000 0.35 0.0 37.57 4.02 F
5821 19215 1.135774 CATCTCCGACAACTCGACGAA 60.136 52.381 0.00 0.0 43.06 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1043 1080 0.392193 CAGCAGCAGGGTGTAGAAGG 60.392 60.000 0.00 0.00 40.14 3.46 R
2408 4719 0.038159 CAGGGTGAGAAGGTGACGTC 60.038 60.000 9.11 9.11 39.33 4.34 R
3028 5369 0.892063 GGACACACCACTCTCTCTCC 59.108 60.000 0.00 0.00 38.79 3.71 R
3508 9192 0.109272 GGCATCTCTGTCGTTGTCGA 60.109 55.000 0.00 0.00 44.12 4.20 R
4515 17292 0.169009 GGCGACATCTTTGGTTGCTC 59.831 55.000 4.91 0.00 43.66 4.26 R
5189 18556 1.078848 GACGCCCTGCATGAAGTCT 60.079 57.895 0.00 0.00 0.00 3.24 R
6398 20102 1.182667 TGATCACCACGAACCTCGAT 58.817 50.000 2.59 0.00 43.74 3.59 R
6491 20203 1.516365 CTGTCACTGTCGGTCGGAGT 61.516 60.000 0.00 0.00 0.00 3.85 R
6644 20356 4.400961 GAGCCCTTGGACAGCGCT 62.401 66.667 2.64 2.64 39.53 5.92 R
6713 20425 0.952497 CGCAGTGCTGTGACAGGAAT 60.952 55.000 15.24 8.16 43.32 3.01 R
6722 20446 3.299977 TACCCGTCGCAGTGCTGT 61.300 61.111 14.33 5.09 0.00 4.40 R
7915 21655 0.108851 CATTACCGCAACCCAAAGGC 60.109 55.000 0.00 0.00 36.11 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 0.037232 AAGAGGAGTTGCTGGTACGC 60.037 55.000 0.00 0.00 0.00 4.42
464 470 1.920351 TGTCCCAATAAGTTCCTCCCC 59.080 52.381 0.00 0.00 0.00 4.81
549 555 6.399013 TGGTTTAGATGGGACTTATAGGGAT 58.601 40.000 0.00 0.00 0.00 3.85
593 599 3.094484 AGTCCCTTGAAACAAACACCA 57.906 42.857 0.00 0.00 0.00 4.17
619 625 2.943993 GTCGACTGAGACTTAACCACC 58.056 52.381 8.70 0.00 38.09 4.61
668 675 8.846211 CATGTAAAGAAAAAGAGTTTACCCAGA 58.154 33.333 0.00 0.00 36.31 3.86
719 726 0.746923 TCGTCGATCGACATCCACCT 60.747 55.000 38.62 0.00 44.77 4.00
751 758 2.412112 CGGTCCCTACGCTGCTAC 59.588 66.667 0.00 0.00 0.00 3.58
773 780 2.752144 AGCTTTCGATCGTACGTAGG 57.248 50.000 15.94 8.97 34.70 3.18
861 877 3.066814 GGTACGCCACCGGAGAGT 61.067 66.667 9.46 9.84 37.63 3.24
862 878 2.488820 GTACGCCACCGGAGAGTC 59.511 66.667 9.46 0.00 39.22 3.36
863 879 3.129502 TACGCCACCGGAGAGTCG 61.130 66.667 9.46 7.55 39.22 4.18
949 977 4.350441 CCGGCTAGCGGCTAGAGC 62.350 72.222 34.80 25.11 41.46 4.09
1034 1068 2.509561 GCCTTCTTCCCTCGTCGC 60.510 66.667 0.00 0.00 0.00 5.19
1051 1088 1.003051 GCCCCCTCCTCCTTCTACA 59.997 63.158 0.00 0.00 0.00 2.74
1053 1090 0.691413 CCCCCTCCTCCTTCTACACC 60.691 65.000 0.00 0.00 0.00 4.16
1461 1887 1.929376 CCCTTAATTACGCCGCGAC 59.071 57.895 21.79 0.00 0.00 5.19
1470 1896 4.409588 CGCCGCGACAACACTTCG 62.410 66.667 8.23 0.00 39.56 3.79
1622 2075 5.485708 AGCTGGACTCCACTAACTATTTCTT 59.514 40.000 0.00 0.00 0.00 2.52
1626 2079 7.918076 TGGACTCCACTAACTATTTCTTTCAT 58.082 34.615 0.00 0.00 0.00 2.57
1636 2089 5.575957 ACTATTTCTTTCATCATGCAAGCG 58.424 37.500 0.00 0.00 0.00 4.68
1638 2091 2.905959 TCTTTCATCATGCAAGCGTG 57.094 45.000 7.93 7.93 0.00 5.34
1705 2160 5.255687 ACCATATGTCTCTCAACATGCAAA 58.744 37.500 1.24 0.00 40.08 3.68
1716 2171 5.301551 TCTCAACATGCAAACATACCACTTT 59.698 36.000 0.00 0.00 33.67 2.66
1776 2232 7.326789 ACATGCAAAAATACATGAGAACTTTCG 59.673 33.333 9.77 0.00 45.23 3.46
1929 2450 1.837538 CGCAACAACGTGTGGGGTAG 61.838 60.000 0.00 0.00 30.44 3.18
1968 2489 1.946650 GCACGTCGAGCCATCTAGC 60.947 63.158 2.98 0.00 0.00 3.42
2071 4171 4.057224 GTCAACACATGGACGGCA 57.943 55.556 0.00 0.00 0.00 5.69
2169 4269 7.540400 CGGAAGTACAAAGCATCTCAGATATAG 59.460 40.741 0.00 0.00 0.00 1.31
2224 4324 4.429212 CACCACGATCGCACGGGA 62.429 66.667 16.60 0.00 39.16 5.14
2254 4354 2.859165 ACAACCACGACATCTCCATT 57.141 45.000 0.00 0.00 0.00 3.16
2258 4358 3.417069 ACCACGACATCTCCATTGAAA 57.583 42.857 0.00 0.00 0.00 2.69
2294 4508 1.341976 ACTAATCCAACCCACATGGCC 60.342 52.381 0.00 0.00 37.88 5.36
2408 4719 1.667724 GTTGAGAACTCCATGCCATCG 59.332 52.381 0.00 0.00 0.00 3.84
2661 4997 4.965119 ACTGTGTGAAACCAGACTTTTC 57.035 40.909 0.00 0.00 37.32 2.29
2667 5003 7.254852 TGTGTGAAACCAGACTTTTCAAATAC 58.745 34.615 4.29 5.46 42.98 1.89
2670 5006 6.631636 GTGAAACCAGACTTTTCAAATACGAC 59.368 38.462 4.29 0.00 42.98 4.34
2675 5011 7.138736 ACCAGACTTTTCAAATACGACATTTG 58.861 34.615 16.18 16.18 39.61 2.32
2801 5138 5.221402 TGTTGAAATATGCAGCCTTCACAAA 60.221 36.000 6.63 0.00 0.00 2.83
2808 5145 5.664294 ATGCAGCCTTCACAAATATCAAA 57.336 34.783 0.00 0.00 0.00 2.69
2810 5147 6.040209 TGCAGCCTTCACAAATATCAAATT 57.960 33.333 0.00 0.00 0.00 1.82
2814 5151 8.934825 GCAGCCTTCACAAATATCAAATTTTTA 58.065 29.630 0.00 0.00 0.00 1.52
2921 5258 9.712305 TCTTGTTTTAAAGATTTTTGTTGACCA 57.288 25.926 0.00 0.00 31.19 4.02
2977 5314 8.845942 AAATTTTGGTTAAAAGTGACGAGTAC 57.154 30.769 0.00 0.00 39.01 2.73
2978 5315 6.981762 TTTTGGTTAAAAGTGACGAGTACA 57.018 33.333 0.00 0.00 32.31 2.90
2980 5317 6.774354 TTGGTTAAAAGTGACGAGTACATC 57.226 37.500 0.00 0.00 0.00 3.06
3013 5350 8.925700 GTGATAAGAAAAATGAAATGGTTGTCC 58.074 33.333 0.00 0.00 0.00 4.02
3028 5369 3.055747 GGTTGTCCTTAGTTGGAGAGAGG 60.056 52.174 0.00 0.00 36.69 3.69
3039 5380 1.563879 TGGAGAGAGGGAGAGAGAGTG 59.436 57.143 0.00 0.00 0.00 3.51
3050 5391 0.037790 GAGAGAGTGGTGTGTCCTGC 60.038 60.000 0.00 0.00 37.07 4.85
3051 5392 1.373497 GAGAGTGGTGTGTCCTGCG 60.373 63.158 0.00 0.00 37.07 5.18
3052 5393 2.088674 GAGAGTGGTGTGTCCTGCGT 62.089 60.000 0.00 0.00 37.07 5.24
3091 5997 5.007724 CCTCTCACTTTGTTACCTGACAAAC 59.992 44.000 0.00 0.00 42.73 2.93
3094 6000 5.120399 TCACTTTGTTACCTGACAAACGAT 58.880 37.500 0.00 0.00 42.73 3.73
3116 6022 1.682087 GCTATTGTGGACCCCCTCAAC 60.682 57.143 0.00 0.00 45.39 3.18
3129 6035 3.157087 CCCCTCAACTTGTATTGCAACT 58.843 45.455 0.00 0.00 32.90 3.16
3136 6042 7.115378 CCTCAACTTGTATTGCAACTTTTCATC 59.885 37.037 0.00 0.00 32.90 2.92
3138 6044 6.403866 ACTTGTATTGCAACTTTTCATCCA 57.596 33.333 0.00 0.00 32.90 3.41
3145 6051 6.660887 TTGCAACTTTTCATCCAAGAAAAC 57.339 33.333 0.00 0.00 41.22 2.43
3154 6060 9.243637 CTTTTCATCCAAGAAAACGATTAACAA 57.756 29.630 0.00 0.00 41.22 2.83
3156 6062 6.367421 TCATCCAAGAAAACGATTAACAACG 58.633 36.000 0.00 0.00 0.00 4.10
3218 6124 2.026641 AGGATGATGGATGTTTTGCCG 58.973 47.619 0.00 0.00 0.00 5.69
3219 6125 1.750778 GGATGATGGATGTTTTGCCGT 59.249 47.619 0.00 0.00 0.00 5.68
3276 6182 0.249868 CGTCCACTTCTCACCTTGCA 60.250 55.000 0.00 0.00 0.00 4.08
3311 6217 3.876309 AGGTTATTTGGACTGGTGTGT 57.124 42.857 0.00 0.00 0.00 3.72
3416 6351 5.653330 TGGTCTGTATATTACTCACGGTGAA 59.347 40.000 12.54 0.00 0.00 3.18
3463 9147 0.618981 ACCCCAAGTGTTAGCTAGCC 59.381 55.000 12.13 0.00 0.00 3.93
3478 9162 2.009774 CTAGCCCATGCAGTTGTACAC 58.990 52.381 0.00 0.00 41.13 2.90
3508 9192 2.047274 CCACGAGGCCACGACATT 60.047 61.111 29.67 3.24 37.03 2.71
3556 9303 3.841643 CCATGATCCAAGTTTCAACTGC 58.158 45.455 0.00 0.00 39.66 4.40
3558 9305 4.482386 CATGATCCAAGTTTCAACTGCTG 58.518 43.478 0.00 0.00 39.66 4.41
3559 9306 3.554934 TGATCCAAGTTTCAACTGCTGT 58.445 40.909 0.00 0.00 39.66 4.40
3560 9307 3.316029 TGATCCAAGTTTCAACTGCTGTG 59.684 43.478 0.00 0.00 39.66 3.66
3716 10275 3.319122 TCATCATCGATCGGTCATCAGTT 59.681 43.478 16.41 0.00 0.00 3.16
3717 10276 3.801114 TCATCGATCGGTCATCAGTTT 57.199 42.857 16.41 0.00 0.00 2.66
3723 13629 4.581409 TCGATCGGTCATCAGTTTATACCA 59.419 41.667 16.41 0.00 0.00 3.25
3785 13691 7.706179 TCCCAATCGATTCAAAATAATTGAAGC 59.294 33.333 7.92 8.64 41.13 3.86
3841 13757 7.230108 AGTCCGTAGAAATATCCGTAAAGATCA 59.770 37.037 0.00 0.00 0.00 2.92
3947 13979 7.149569 TGAATGGAAGAGAGTGCAATAAAAG 57.850 36.000 0.00 0.00 0.00 2.27
4025 14738 8.830201 TGAATTAATTTTGGTTTCACAGATGG 57.170 30.769 1.43 0.00 0.00 3.51
4099 14879 8.879759 TGACAATCGTAGGACTTCAATTATTTC 58.120 33.333 0.00 0.00 0.00 2.17
4105 14885 6.311935 CGTAGGACTTCAATTATTTCGGAACA 59.688 38.462 0.00 0.00 0.00 3.18
4171 14954 9.790344 TGGGATTATTCACAATGACAAAAATTT 57.210 25.926 0.00 0.00 30.42 1.82
4230 15728 5.995897 GGGGTACATATGTCTATGGTTGTTC 59.004 44.000 12.68 0.00 39.29 3.18
4265 15770 7.715265 TTTTAGTGCTAGTTGTTCTCTTCTG 57.285 36.000 0.00 0.00 0.00 3.02
4338 17085 0.035439 ATGGTTGCTAGGGGTTCACG 60.035 55.000 0.00 0.00 0.00 4.35
4344 17095 1.063492 TGCTAGGGGTTCACGGATCTA 60.063 52.381 0.00 0.00 0.00 1.98
4410 17187 7.981142 TGATTGAGGATGAATAGATTGGATGA 58.019 34.615 0.00 0.00 0.00 2.92
4411 17188 8.101419 TGATTGAGGATGAATAGATTGGATGAG 58.899 37.037 0.00 0.00 0.00 2.90
4412 17189 7.622502 TTGAGGATGAATAGATTGGATGAGA 57.377 36.000 0.00 0.00 0.00 3.27
4413 17190 7.622502 TGAGGATGAATAGATTGGATGAGAA 57.377 36.000 0.00 0.00 0.00 2.87
4414 17191 8.037723 TGAGGATGAATAGATTGGATGAGAAA 57.962 34.615 0.00 0.00 0.00 2.52
4418 17195 7.500227 GGATGAATAGATTGGATGAGAAACACA 59.500 37.037 0.00 0.00 0.00 3.72
4424 17201 6.974965 AGATTGGATGAGAAACACAGAAAAC 58.025 36.000 0.00 0.00 0.00 2.43
4428 17205 6.329496 TGGATGAGAAACACAGAAAACAAAC 58.671 36.000 0.00 0.00 0.00 2.93
4429 17206 6.152661 TGGATGAGAAACACAGAAAACAAACT 59.847 34.615 0.00 0.00 0.00 2.66
4431 17208 6.567687 TGAGAAACACAGAAAACAAACTCA 57.432 33.333 0.00 0.00 0.00 3.41
4433 17210 8.275015 TGAGAAACACAGAAAACAAACTCATA 57.725 30.769 0.00 0.00 0.00 2.15
4434 17211 8.902806 TGAGAAACACAGAAAACAAACTCATAT 58.097 29.630 0.00 0.00 0.00 1.78
4475 17252 9.502091 TTGAGAAACAGCACACTTTATATAACT 57.498 29.630 0.00 0.00 0.00 2.24
4476 17253 9.151471 TGAGAAACAGCACACTTTATATAACTC 57.849 33.333 0.00 0.00 0.00 3.01
4477 17254 9.151471 GAGAAACAGCACACTTTATATAACTCA 57.849 33.333 0.00 0.00 0.00 3.41
4505 17282 9.614792 AATGATAGTAGGAATACAAAGACCAAC 57.385 33.333 0.00 0.00 0.00 3.77
4508 17285 5.805728 AGTAGGAATACAAAGACCAACAGG 58.194 41.667 0.00 0.00 0.00 4.00
4518 17295 2.743928 CCAACAGGTGGCTCGAGC 60.744 66.667 29.38 29.38 41.72 5.03
4519 17296 2.031012 CAACAGGTGGCTCGAGCA 59.969 61.111 36.27 20.82 44.36 4.26
4520 17297 1.597854 CAACAGGTGGCTCGAGCAA 60.598 57.895 36.27 25.98 44.36 3.91
4521 17298 1.598130 AACAGGTGGCTCGAGCAAC 60.598 57.895 36.27 34.54 44.15 4.17
4526 17303 1.576421 GTGGCTCGAGCAACCAAAG 59.424 57.895 36.27 0.00 44.36 2.77
4527 17304 0.884704 GTGGCTCGAGCAACCAAAGA 60.885 55.000 36.27 8.41 44.36 2.52
4528 17305 0.036732 TGGCTCGAGCAACCAAAGAT 59.963 50.000 36.27 0.00 44.36 2.40
4529 17306 0.449388 GGCTCGAGCAACCAAAGATG 59.551 55.000 36.27 0.00 44.36 2.90
4531 17308 1.129437 GCTCGAGCAACCAAAGATGTC 59.871 52.381 31.91 0.00 41.59 3.06
4532 17309 1.391485 CTCGAGCAACCAAAGATGTCG 59.609 52.381 0.00 0.00 0.00 4.35
4533 17310 0.179215 CGAGCAACCAAAGATGTCGC 60.179 55.000 0.00 0.00 0.00 5.19
4534 17311 0.169009 GAGCAACCAAAGATGTCGCC 59.831 55.000 0.00 0.00 0.00 5.54
4535 17312 1.212751 GCAACCAAAGATGTCGCCC 59.787 57.895 0.00 0.00 0.00 6.13
4536 17313 1.523154 GCAACCAAAGATGTCGCCCA 61.523 55.000 0.00 0.00 0.00 5.36
4537 17314 0.523072 CAACCAAAGATGTCGCCCAG 59.477 55.000 0.00 0.00 0.00 4.45
4538 17315 0.400213 AACCAAAGATGTCGCCCAGA 59.600 50.000 0.00 0.00 0.00 3.86
4541 17318 1.672881 CCAAAGATGTCGCCCAGATTC 59.327 52.381 0.00 0.00 0.00 2.52
4542 17319 2.636830 CAAAGATGTCGCCCAGATTCT 58.363 47.619 0.00 0.00 0.00 2.40
4544 17321 4.191544 CAAAGATGTCGCCCAGATTCTAA 58.808 43.478 0.00 0.00 0.00 2.10
4545 17322 4.487714 AAGATGTCGCCCAGATTCTAAA 57.512 40.909 0.00 0.00 0.00 1.85
4546 17323 4.696479 AGATGTCGCCCAGATTCTAAAT 57.304 40.909 0.00 0.00 0.00 1.40
4547 17324 5.041191 AGATGTCGCCCAGATTCTAAATT 57.959 39.130 0.00 0.00 0.00 1.82
4548 17325 6.174720 AGATGTCGCCCAGATTCTAAATTA 57.825 37.500 0.00 0.00 0.00 1.40
4549 17326 6.226787 AGATGTCGCCCAGATTCTAAATTAG 58.773 40.000 0.00 0.00 0.00 1.73
4550 17327 4.127171 TGTCGCCCAGATTCTAAATTAGC 58.873 43.478 0.00 0.00 0.00 3.09
4551 17328 4.127171 GTCGCCCAGATTCTAAATTAGCA 58.873 43.478 0.00 0.00 0.00 3.49
4552 17329 4.212214 GTCGCCCAGATTCTAAATTAGCAG 59.788 45.833 0.00 0.00 0.00 4.24
4555 17332 4.522022 GCCCAGATTCTAAATTAGCAGCAT 59.478 41.667 0.00 0.00 0.00 3.79
4556 17333 5.707298 GCCCAGATTCTAAATTAGCAGCATA 59.293 40.000 0.00 0.00 0.00 3.14
4558 17335 7.414984 GCCCAGATTCTAAATTAGCAGCATATC 60.415 40.741 0.00 0.00 0.00 1.63
4583 17360 4.625800 GCGATGAGCCTCCTTGTT 57.374 55.556 0.00 0.00 40.81 2.83
4584 17361 2.093216 GCGATGAGCCTCCTTGTTG 58.907 57.895 0.00 0.00 40.81 3.33
4585 17362 1.986575 GCGATGAGCCTCCTTGTTGC 61.987 60.000 0.00 0.00 40.81 4.17
4590 17691 0.610232 GAGCCTCCTTGTTGCCATGT 60.610 55.000 0.00 0.00 0.00 3.21
4594 17695 0.883833 CTCCTTGTTGCCATGTGGTC 59.116 55.000 0.35 0.00 37.57 4.02
4601 17702 4.314740 TGTTGCCATGTGGTCTTAAAAC 57.685 40.909 0.35 0.00 37.57 2.43
4602 17703 3.957497 TGTTGCCATGTGGTCTTAAAACT 59.043 39.130 0.35 0.00 37.57 2.66
4703 18070 2.048127 GCGGAGGCAGAGTTCGTT 60.048 61.111 0.00 0.00 39.62 3.85
4864 18231 3.311110 AAGCTTCGGGTGGCGAGA 61.311 61.111 0.00 0.00 0.00 4.04
5021 18388 1.736586 CCTTGACGCGCTCCTCTAT 59.263 57.895 5.73 0.00 0.00 1.98
5052 18419 4.874977 TGCCGACGCGTGTGTTCA 62.875 61.111 20.70 4.14 38.08 3.18
5189 18556 1.379044 GTTCGACCCCGAGGACCTA 60.379 63.158 0.00 0.00 46.39 3.08
5278 18645 3.766691 GCGGTTCAGGGCGAGGTA 61.767 66.667 0.00 0.00 0.00 3.08
5611 19002 2.032071 GGTGACGGTGGGGTTCTG 59.968 66.667 0.00 0.00 0.00 3.02
5612 19003 2.032071 GTGACGGTGGGGTTCTGG 59.968 66.667 0.00 0.00 0.00 3.86
5613 19004 2.122769 TGACGGTGGGGTTCTGGA 60.123 61.111 0.00 0.00 0.00 3.86
5614 19005 2.346365 GACGGTGGGGTTCTGGAC 59.654 66.667 0.00 0.00 0.00 4.02
5615 19006 3.584868 GACGGTGGGGTTCTGGACG 62.585 68.421 0.00 0.00 0.00 4.79
5642 19033 4.593864 GGCATCTCGCGGGACCTC 62.594 72.222 12.89 2.58 43.84 3.85
5660 19051 3.660111 AAAGACGGCAGCGGCAAC 61.660 61.111 11.88 1.04 43.71 4.17
5685 19076 1.377725 CGGCAGCTGAAACCCATCT 60.378 57.895 20.43 0.00 0.00 2.90
5821 19215 1.135774 CATCTCCGACAACTCGACGAA 60.136 52.381 0.00 0.00 43.06 3.85
6015 19409 2.420890 CGAGCAGGATGGAGGAGC 59.579 66.667 0.00 0.00 35.86 4.70
6283 19709 4.490959 CGTCTTCGCACACAGTAATTCATC 60.491 45.833 0.00 0.00 0.00 2.92
6644 20356 2.707849 GGAGGAGCAGTACGCCGAA 61.708 63.158 0.00 0.00 44.30 4.30
6713 20425 2.584236 GAGATCCCGTACCTGAAGCTA 58.416 52.381 0.00 0.00 0.00 3.32
6722 20446 3.130516 CGTACCTGAAGCTATTCCTGTCA 59.869 47.826 0.00 0.00 34.28 3.58
6833 20557 4.222847 GTGTCGCGGGGGATCCTC 62.223 72.222 12.58 7.61 0.00 3.71
6842 20566 2.597903 GGGATCCTCAACCTGGCC 59.402 66.667 12.58 0.00 0.00 5.36
7205 20929 3.159984 GTCAGAAACGGCAGCGAG 58.840 61.111 0.00 0.00 0.00 5.03
7247 20971 4.802051 AATGGCAGTGGCGGCGAT 62.802 61.111 12.98 0.00 42.47 4.58
7290 21026 2.668632 GGGAGGAACACGCCATGA 59.331 61.111 0.00 0.00 41.44 3.07
7311 21047 4.525949 GGACGACCCCGCTAAGCC 62.526 72.222 0.00 0.00 39.95 4.35
7332 21068 1.683385 TGTACATCAGCTCCGAGATGG 59.317 52.381 13.55 1.39 44.50 3.51
7391 21127 3.194329 AGATCAGTGAGTCATTCGAGCAA 59.806 43.478 0.00 0.00 0.00 3.91
7448 21187 3.168773 GCCAACGGCCTCTCAATTA 57.831 52.632 0.00 0.00 44.06 1.40
7451 21190 2.432444 CCAACGGCCTCTCAATTACAA 58.568 47.619 0.00 0.00 0.00 2.41
7463 21202 7.223777 GCCTCTCAATTACAACAGTAGATTCTC 59.776 40.741 0.00 0.00 0.00 2.87
7663 21403 8.660295 TCTTACAGAGGGAGTATTTAGAAACA 57.340 34.615 0.00 0.00 0.00 2.83
7664 21404 8.750298 TCTTACAGAGGGAGTATTTAGAAACAG 58.250 37.037 0.00 0.00 0.00 3.16
7666 21406 7.176589 ACAGAGGGAGTATTTAGAAACAGAG 57.823 40.000 0.00 0.00 0.00 3.35
7669 21409 5.600749 AGGGAGTATTTAGAAACAGAGGGA 58.399 41.667 0.00 0.00 0.00 4.20
7673 21413 7.290481 GGGAGTATTTAGAAACAGAGGGAGTAT 59.710 40.741 0.00 0.00 0.00 2.12
7687 21427 8.968969 ACAGAGGGAGTATTAGTTTTGTAGTAG 58.031 37.037 0.00 0.00 0.00 2.57
7701 21441 7.491696 AGTTTTGTAGTAGGATTAGAACGCATC 59.508 37.037 0.00 0.00 0.00 3.91
7706 21446 2.555199 AGGATTAGAACGCATCTGCAC 58.445 47.619 2.72 0.00 42.21 4.57
7708 21448 2.193447 GATTAGAACGCATCTGCACGA 58.807 47.619 1.06 0.00 42.21 4.35
7712 21452 1.005037 AACGCATCTGCACGAGGAA 60.005 52.632 1.06 0.00 42.21 3.36
7715 21455 1.086067 CGCATCTGCACGAGGAATGT 61.086 55.000 2.72 0.00 42.21 2.71
7718 21458 2.892374 CATCTGCACGAGGAATGTGTA 58.108 47.619 0.00 0.00 39.53 2.90
7722 21462 1.204704 TGCACGAGGAATGTGTAGGAG 59.795 52.381 0.00 0.00 39.53 3.69
7731 21471 6.366332 CGAGGAATGTGTAGGAGTATAAATGC 59.634 42.308 0.00 0.00 0.00 3.56
7788 21528 6.841781 AATCTCTAAGGCCCATTTAGGTTA 57.158 37.500 0.00 0.00 34.66 2.85
7806 21546 3.554129 GGTTAATGGCAAGTGGTGGAAAC 60.554 47.826 0.00 0.00 0.00 2.78
7812 21552 2.296190 GGCAAGTGGTGGAAACTTTAGG 59.704 50.000 0.00 0.00 35.70 2.69
7838 21578 3.722908 ACTGCTAGTGGAGTGAGAGTA 57.277 47.619 0.00 0.00 43.30 2.59
7876 21616 2.026822 ACTCCTCTACCACATGCCTTTG 60.027 50.000 0.00 0.00 0.00 2.77
7885 21625 0.112995 ACATGCCTTTGGGAGCTTGA 59.887 50.000 5.08 0.00 37.53 3.02
7892 21632 2.304180 CCTTTGGGAGCTTGAGAAGAGA 59.696 50.000 0.00 0.00 33.58 3.10
7902 21642 6.107901 AGCTTGAGAAGAGAAGTTGTACAT 57.892 37.500 0.00 0.00 0.00 2.29
7904 21644 5.390356 GCTTGAGAAGAGAAGTTGTACATGC 60.390 44.000 0.00 0.00 0.00 4.06
7905 21645 5.474578 TGAGAAGAGAAGTTGTACATGCT 57.525 39.130 0.00 0.00 0.00 3.79
7906 21646 5.858381 TGAGAAGAGAAGTTGTACATGCTT 58.142 37.500 11.49 11.49 0.00 3.91
7907 21647 6.291377 TGAGAAGAGAAGTTGTACATGCTTT 58.709 36.000 12.53 5.43 0.00 3.51
7908 21648 6.203530 TGAGAAGAGAAGTTGTACATGCTTTG 59.796 38.462 12.53 0.00 0.00 2.77
7909 21649 6.291377 AGAAGAGAAGTTGTACATGCTTTGA 58.709 36.000 12.53 0.00 0.00 2.69
7910 21650 6.767902 AGAAGAGAAGTTGTACATGCTTTGAA 59.232 34.615 12.53 0.00 0.00 2.69
7911 21651 6.942532 AGAGAAGTTGTACATGCTTTGAAA 57.057 33.333 12.53 0.00 0.00 2.69
7912 21652 6.963796 AGAGAAGTTGTACATGCTTTGAAAG 58.036 36.000 12.53 0.00 0.00 2.62
7955 21721 0.530288 GCCGAGCCTTATTTTTGCCA 59.470 50.000 0.00 0.00 0.00 4.92
7956 21722 1.067213 GCCGAGCCTTATTTTTGCCAA 60.067 47.619 0.00 0.00 0.00 4.52
8016 21783 1.199327 GCTACAGTAGTGTCGCTGTCA 59.801 52.381 17.54 0.00 43.91 3.58
8027 21794 0.878523 TCGCTGTCAAAGACGTTGGG 60.879 55.000 1.16 0.00 37.85 4.12
8050 21817 0.391597 TGGGTTGTTCGAGGACTCAC 59.608 55.000 0.00 0.00 0.00 3.51
8063 21830 0.615331 GACTCACTCATGGGCCTGAA 59.385 55.000 4.53 0.00 0.00 3.02
8084 21851 1.622449 CCCAGACCCATCTACCAGACA 60.622 57.143 0.00 0.00 32.25 3.41
8102 21871 5.010719 CCAGACAACCTATATAAGAAGGCGA 59.989 44.000 0.00 0.00 36.24 5.54
8107 21876 3.119101 ACCTATATAAGAAGGCGATGGCG 60.119 47.826 0.00 0.00 41.24 5.69
8116 21885 2.782222 GGCGATGGCGAGTGGAGTA 61.782 63.158 0.00 0.00 41.24 2.59
8124 21893 2.753452 TGGCGAGTGGAGTAAACTCTAG 59.247 50.000 9.84 0.00 41.60 2.43
8129 21903 4.336993 CGAGTGGAGTAAACTCTAGCTCAT 59.663 45.833 18.94 0.48 41.60 2.90
8145 21919 1.280133 CTCATTCACTCCCTCCTGCAA 59.720 52.381 0.00 0.00 0.00 4.08
8158 21932 0.893727 CCTGCAAAACCCTAGCCGTT 60.894 55.000 0.00 0.00 0.00 4.44
8181 21955 8.779303 CGTTATCTACTGTTCATCTCTCTATGT 58.221 37.037 0.00 0.00 0.00 2.29
8209 21983 2.335369 GATCCCATCCCGACGACG 59.665 66.667 0.00 0.00 39.43 5.12
8252 22027 2.686106 GGTGCCTCCGGAACCCTA 60.686 66.667 12.15 0.00 0.00 3.53
8271 22046 0.911769 ATTGTTCGAGATCCTGCCCA 59.088 50.000 0.00 0.00 0.00 5.36
8357 22133 1.599576 GTCCTCCTCTGCTTCCACC 59.400 63.158 0.00 0.00 0.00 4.61
8395 22172 1.375523 ATGGTTGAAGACGTCGGCC 60.376 57.895 10.46 9.56 0.00 6.13
8415 22192 0.035056 CCAAGAAGAAGGCCACGGAT 60.035 55.000 5.01 0.00 0.00 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
593 599 5.944599 TGGTTAAGTCTCAGTCGACTAAGAT 59.055 40.000 21.21 9.22 43.14 2.40
611 617 3.523972 TGCTATGTGTATGGGGTGGTTAA 59.476 43.478 0.00 0.00 0.00 2.01
616 622 3.281727 AACTGCTATGTGTATGGGGTG 57.718 47.619 0.00 0.00 0.00 4.61
619 625 3.494626 CGCTAAACTGCTATGTGTATGGG 59.505 47.826 0.00 0.00 0.00 4.00
672 679 3.251004 CGCTAGCAACTGTTCCTCTTTTT 59.749 43.478 16.45 0.00 0.00 1.94
677 684 2.082354 GCGCTAGCAACTGTTCCTC 58.918 57.895 16.45 0.00 44.35 3.71
751 758 2.082733 ACGTACGATCGAAAGCTACG 57.917 50.000 24.34 24.57 36.97 3.51
755 762 2.370515 GTCCTACGTACGATCGAAAGC 58.629 52.381 24.34 7.45 34.70 3.51
773 780 4.394712 CTGAGGGTGGGCCACGTC 62.395 72.222 29.18 26.20 34.83 4.34
942 970 1.146637 CTGATTGATGCGGCTCTAGC 58.853 55.000 0.00 0.00 41.14 3.42
943 971 2.808523 TCTGATTGATGCGGCTCTAG 57.191 50.000 0.00 0.00 0.00 2.43
944 972 2.352127 CGATCTGATTGATGCGGCTCTA 60.352 50.000 0.00 0.00 35.14 2.43
945 973 1.604947 CGATCTGATTGATGCGGCTCT 60.605 52.381 0.00 0.00 35.14 4.09
946 974 0.788995 CGATCTGATTGATGCGGCTC 59.211 55.000 0.00 0.00 35.14 4.70
947 975 1.226686 GCGATCTGATTGATGCGGCT 61.227 55.000 9.11 0.00 35.14 5.52
948 976 1.206072 GCGATCTGATTGATGCGGC 59.794 57.895 9.11 0.00 35.14 6.53
949 977 1.490258 CGCGATCTGATTGATGCGG 59.510 57.895 0.00 0.00 42.81 5.69
950 978 1.154709 GCGCGATCTGATTGATGCG 60.155 57.895 12.10 17.27 45.83 4.73
1034 1068 0.691413 GGTGTAGAAGGAGGAGGGGG 60.691 65.000 0.00 0.00 0.00 5.40
1038 1072 0.827368 GCAGGGTGTAGAAGGAGGAG 59.173 60.000 0.00 0.00 0.00 3.69
1043 1080 0.392193 CAGCAGCAGGGTGTAGAAGG 60.392 60.000 0.00 0.00 40.14 3.46
1051 1088 4.694233 CACGAGCAGCAGCAGGGT 62.694 66.667 3.17 0.00 45.49 4.34
1053 1090 4.694233 ACCACGAGCAGCAGCAGG 62.694 66.667 3.17 2.13 45.49 4.85
1159 1202 2.060383 TCGCCCAGTCCAGGATCAG 61.060 63.158 0.00 0.00 0.00 2.90
1233 1276 2.178890 CGCCGCGTAGTAGTCCTCT 61.179 63.158 4.92 0.00 0.00 3.69
1461 1887 0.785708 GCGTGCGATTCGAAGTGTTG 60.786 55.000 10.88 0.00 0.00 3.33
1470 1896 2.560151 CGAGACGAGCGTGCGATTC 61.560 63.158 0.00 2.85 34.83 2.52
1595 2047 3.686916 AGTTAGTGGAGTCCAGCTTTC 57.313 47.619 13.61 0.00 32.34 2.62
1638 2091 0.452987 ATGTTGTGCGATGATGTGGC 59.547 50.000 0.00 0.00 0.00 5.01
1705 2160 8.065473 TGCAATTTCATGATAAAGTGGTATGT 57.935 30.769 9.04 0.00 35.54 2.29
1929 2450 7.169308 ACGTGCACATAATACTTAACTAGATGC 59.831 37.037 18.64 0.00 0.00 3.91
1968 2489 8.703336 CACGATAAATAGTGGATCATACAACAG 58.297 37.037 0.00 0.00 34.93 3.16
1999 2520 0.802222 CGACAAGGACACGATGCGAT 60.802 55.000 0.00 0.00 0.00 4.58
2071 4171 2.837031 AATTGAGGCCCCGTGCGATT 62.837 55.000 0.00 0.00 42.61 3.34
2224 4324 4.200874 TGTCGTGGTTGTTAATTTGAGGT 58.799 39.130 0.00 0.00 0.00 3.85
2294 4508 2.415512 GCGGTTAAAAGTGGCAGTCTAG 59.584 50.000 0.00 0.00 0.00 2.43
2408 4719 0.038159 CAGGGTGAGAAGGTGACGTC 60.038 60.000 9.11 9.11 39.33 4.34
2599 4920 8.812329 CACCAATTTCGAAAAACTATTTTGACA 58.188 29.630 15.66 0.00 38.83 3.58
2600 4921 9.026074 TCACCAATTTCGAAAAACTATTTTGAC 57.974 29.630 15.66 0.00 38.83 3.18
2606 4942 9.927668 ATGATTTCACCAATTTCGAAAAACTAT 57.072 25.926 15.66 0.00 32.76 2.12
2670 5006 6.218019 ACAGAAATGACCACATTCACAAATG 58.782 36.000 0.00 0.00 44.67 2.32
2675 5011 5.647658 TGGATACAGAAATGACCACATTCAC 59.352 40.000 0.00 0.00 43.51 3.18
2950 5287 7.540299 ACTCGTCACTTTTAACCAAAATTTCA 58.460 30.769 0.00 0.00 33.27 2.69
2955 5292 6.981762 TGTACTCGTCACTTTTAACCAAAA 57.018 33.333 0.00 0.00 32.73 2.44
3001 5338 5.313712 TCTCCAACTAAGGACAACCATTTC 58.686 41.667 0.00 0.00 38.94 2.17
3007 5344 3.055747 CCCTCTCTCCAACTAAGGACAAC 60.056 52.174 0.00 0.00 33.19 3.32
3013 5350 4.080015 TCTCTCTCCCTCTCTCCAACTAAG 60.080 50.000 0.00 0.00 0.00 2.18
3028 5369 0.892063 GGACACACCACTCTCTCTCC 59.108 60.000 0.00 0.00 38.79 3.71
3039 5380 2.357517 CTGGACGCAGGACACACC 60.358 66.667 0.00 0.00 39.35 4.16
3050 5391 3.827898 GAGAGGGACGGCTGGACG 61.828 72.222 0.00 0.00 40.31 4.79
3051 5392 3.462678 GGAGAGGGACGGCTGGAC 61.463 72.222 0.00 0.00 0.00 4.02
3052 5393 3.663815 GAGGAGAGGGACGGCTGGA 62.664 68.421 0.00 0.00 0.00 3.86
3057 5963 0.323908 AAGTGAGAGGAGAGGGACGG 60.324 60.000 0.00 0.00 0.00 4.79
3091 5997 1.308998 GGGGTCCACAATAGCAATCG 58.691 55.000 0.00 0.00 0.00 3.34
3094 6000 0.623723 GAGGGGGTCCACAATAGCAA 59.376 55.000 0.00 0.00 34.83 3.91
3116 6022 7.147312 TCTTGGATGAAAAGTTGCAATACAAG 58.853 34.615 11.19 11.19 39.50 3.16
3129 6035 9.026074 GTTGTTAATCGTTTTCTTGGATGAAAA 57.974 29.630 0.00 0.00 41.75 2.29
3136 6042 6.355144 GTGTACGTTGTTAATCGTTTTCTTGG 59.645 38.462 0.00 0.00 40.70 3.61
3138 6044 7.002816 TGTGTACGTTGTTAATCGTTTTCTT 57.997 32.000 0.00 0.00 40.70 2.52
3145 6051 7.265495 GTCTTTTCATGTGTACGTTGTTAATCG 59.735 37.037 0.00 0.00 0.00 3.34
3154 6060 5.053811 TGTCATGTCTTTTCATGTGTACGT 58.946 37.500 0.00 0.00 43.70 3.57
3174 6080 6.279513 TGGTTTGTTCCATGGATATTTGTC 57.720 37.500 17.06 4.03 31.96 3.18
3218 6124 0.722848 CACCGGTGCCGTATGTAAAC 59.277 55.000 24.02 0.00 37.81 2.01
3219 6125 0.391395 CCACCGGTGCCGTATGTAAA 60.391 55.000 29.75 0.00 37.81 2.01
3247 6153 2.744202 GAGAAGTGGACGTGCATGAAAT 59.256 45.455 14.45 0.00 0.00 2.17
3276 6182 6.264518 CCAAATAACCTAATTAAGCCGGATGT 59.735 38.462 5.05 0.00 0.00 3.06
3494 9178 2.158959 GTCGAATGTCGTGGCCTCG 61.159 63.158 20.92 20.92 41.35 4.63
3495 9179 0.669318 TTGTCGAATGTCGTGGCCTC 60.669 55.000 3.32 0.00 41.35 4.70
3496 9180 0.949105 GTTGTCGAATGTCGTGGCCT 60.949 55.000 3.32 0.00 41.35 5.19
3497 9181 1.495951 GTTGTCGAATGTCGTGGCC 59.504 57.895 0.00 0.00 41.35 5.36
3498 9182 1.129809 CGTTGTCGAATGTCGTGGC 59.870 57.895 0.00 0.00 41.35 5.01
3499 9183 2.803979 TCGTTGTCGAATGTCGTGG 58.196 52.632 0.00 0.00 43.34 4.94
3506 9190 6.971892 GAGGCATCTCTGTCGTTGTCGAAT 62.972 50.000 0.00 0.00 40.97 3.34
3507 9191 5.752662 GAGGCATCTCTGTCGTTGTCGAA 62.753 52.174 0.00 0.00 40.97 3.71
3508 9192 0.109272 GGCATCTCTGTCGTTGTCGA 60.109 55.000 0.00 0.00 44.12 4.20
3716 10275 4.278170 GCATGTGGCTAAGCAATGGTATAA 59.722 41.667 0.00 0.00 40.25 0.98
3717 10276 3.820467 GCATGTGGCTAAGCAATGGTATA 59.180 43.478 0.00 0.00 40.25 1.47
3723 13629 1.202486 GCATGCATGTGGCTAAGCAAT 60.202 47.619 26.79 0.00 45.15 3.56
3793 13699 9.543018 GGACTTTGAATAGTCGTCTTAAAAATG 57.457 33.333 0.00 0.00 44.38 2.32
3794 13700 8.440833 CGGACTTTGAATAGTCGTCTTAAAAAT 58.559 33.333 0.00 0.00 44.38 1.82
3803 13709 5.633830 TTCTACGGACTTTGAATAGTCGT 57.366 39.130 0.00 0.00 44.38 4.34
3863 13779 2.605837 TTGAACTAAGCCACGACACA 57.394 45.000 0.00 0.00 0.00 3.72
4073 14853 8.786826 AAATAATTGAAGTCCTACGATTGTCA 57.213 30.769 0.00 0.00 0.00 3.58
4081 14861 7.548075 TCTGTTCCGAAATAATTGAAGTCCTAC 59.452 37.037 0.00 0.00 0.00 3.18
4084 14864 6.594159 TCTCTGTTCCGAAATAATTGAAGTCC 59.406 38.462 0.00 0.00 0.00 3.85
4099 14879 1.066908 GATGCTCCTCTCTCTGTTCCG 59.933 57.143 0.00 0.00 0.00 4.30
4105 14885 4.545678 ACAACATAGATGCTCCTCTCTCT 58.454 43.478 0.00 0.00 0.00 3.10
4206 15024 5.562298 ACAACCATAGACATATGTACCCC 57.438 43.478 8.71 0.00 37.65 4.95
4245 15743 4.946478 ACAGAAGAGAACAACTAGCACT 57.054 40.909 0.00 0.00 0.00 4.40
4246 15744 5.993106 AAACAGAAGAGAACAACTAGCAC 57.007 39.130 0.00 0.00 0.00 4.40
4310 17056 4.724798 ACCCCTAGCAACCATATGAGTTTA 59.275 41.667 3.65 0.00 0.00 2.01
4321 17067 1.376812 CCGTGAACCCCTAGCAACC 60.377 63.158 0.00 0.00 0.00 3.77
4383 17160 9.901172 CATCCAATCTATTCATCCTCAATCATA 57.099 33.333 0.00 0.00 0.00 2.15
4392 17169 7.500227 TGTGTTTCTCATCCAATCTATTCATCC 59.500 37.037 0.00 0.00 0.00 3.51
4393 17170 8.442632 TGTGTTTCTCATCCAATCTATTCATC 57.557 34.615 0.00 0.00 0.00 2.92
4413 17190 9.950680 CAACTATATGAGTTTGTTTTCTGTGTT 57.049 29.630 0.00 0.00 46.79 3.32
4414 17191 8.076178 GCAACTATATGAGTTTGTTTTCTGTGT 58.924 33.333 0.00 0.00 46.79 3.72
4449 17226 9.502091 AGTTATATAAAGTGTGCTGTTTCTCAA 57.498 29.630 0.00 0.00 0.00 3.02
4450 17227 9.151471 GAGTTATATAAAGTGTGCTGTTTCTCA 57.849 33.333 0.00 0.00 0.00 3.27
4451 17228 9.151471 TGAGTTATATAAAGTGTGCTGTTTCTC 57.849 33.333 0.00 0.00 0.00 2.87
4452 17229 9.672673 ATGAGTTATATAAAGTGTGCTGTTTCT 57.327 29.630 0.00 0.00 0.00 2.52
4479 17256 9.614792 GTTGGTCTTTGTATTCCTACTATCATT 57.385 33.333 0.00 0.00 0.00 2.57
4480 17257 8.768397 TGTTGGTCTTTGTATTCCTACTATCAT 58.232 33.333 0.00 0.00 0.00 2.45
4481 17258 8.141298 TGTTGGTCTTTGTATTCCTACTATCA 57.859 34.615 0.00 0.00 0.00 2.15
4482 17259 7.711339 CCTGTTGGTCTTTGTATTCCTACTATC 59.289 40.741 0.00 0.00 0.00 2.08
4483 17260 7.182206 ACCTGTTGGTCTTTGTATTCCTACTAT 59.818 37.037 0.00 0.00 44.78 2.12
4484 17261 6.499350 ACCTGTTGGTCTTTGTATTCCTACTA 59.501 38.462 0.00 0.00 44.78 1.82
4485 17262 5.309806 ACCTGTTGGTCTTTGTATTCCTACT 59.690 40.000 0.00 0.00 44.78 2.57
4486 17263 5.411669 CACCTGTTGGTCTTTGTATTCCTAC 59.588 44.000 0.00 0.00 46.60 3.18
4487 17264 5.514136 CCACCTGTTGGTCTTTGTATTCCTA 60.514 44.000 0.00 0.00 46.60 2.94
4489 17266 3.506067 CCACCTGTTGGTCTTTGTATTCC 59.494 47.826 0.00 0.00 46.60 3.01
4490 17267 4.766404 CCACCTGTTGGTCTTTGTATTC 57.234 45.455 0.00 0.00 46.60 1.75
4502 17279 1.597854 TTGCTCGAGCCACCTGTTG 60.598 57.895 33.23 0.00 41.18 3.33
4503 17280 1.598130 GTTGCTCGAGCCACCTGTT 60.598 57.895 33.23 0.00 41.18 3.16
4508 17285 0.884704 TCTTTGGTTGCTCGAGCCAC 60.885 55.000 33.23 30.70 41.18 5.01
4511 17288 1.129437 GACATCTTTGGTTGCTCGAGC 59.871 52.381 30.42 30.42 42.50 5.03
4512 17289 1.391485 CGACATCTTTGGTTGCTCGAG 59.609 52.381 8.45 8.45 0.00 4.04
4514 17291 0.179215 GCGACATCTTTGGTTGCTCG 60.179 55.000 0.00 0.00 41.46 5.03
4515 17292 0.169009 GGCGACATCTTTGGTTGCTC 59.831 55.000 4.91 0.00 43.66 4.26
4517 17294 1.212751 GGGCGACATCTTTGGTTGC 59.787 57.895 0.00 0.00 43.47 4.17
4518 17295 0.523072 CTGGGCGACATCTTTGGTTG 59.477 55.000 0.00 0.00 0.00 3.77
4519 17296 0.400213 TCTGGGCGACATCTTTGGTT 59.600 50.000 0.00 0.00 0.00 3.67
4520 17297 0.620556 ATCTGGGCGACATCTTTGGT 59.379 50.000 0.00 0.00 0.00 3.67
4521 17298 1.672881 GAATCTGGGCGACATCTTTGG 59.327 52.381 0.00 0.00 0.00 3.28
4522 17299 2.636830 AGAATCTGGGCGACATCTTTG 58.363 47.619 0.00 0.00 0.00 2.77
4523 17300 4.487714 TTAGAATCTGGGCGACATCTTT 57.512 40.909 0.00 0.00 0.00 2.52
4524 17301 4.487714 TTTAGAATCTGGGCGACATCTT 57.512 40.909 0.00 0.00 0.00 2.40
4526 17303 5.106908 GCTAATTTAGAATCTGGGCGACATC 60.107 44.000 7.63 0.00 0.00 3.06
4527 17304 4.757149 GCTAATTTAGAATCTGGGCGACAT 59.243 41.667 7.63 0.00 0.00 3.06
4528 17305 4.127171 GCTAATTTAGAATCTGGGCGACA 58.873 43.478 7.63 0.00 0.00 4.35
4529 17306 4.127171 TGCTAATTTAGAATCTGGGCGAC 58.873 43.478 7.63 0.00 0.00 5.19
4531 17308 3.058639 GCTGCTAATTTAGAATCTGGGCG 60.059 47.826 7.63 0.00 0.00 6.13
4532 17309 3.885297 TGCTGCTAATTTAGAATCTGGGC 59.115 43.478 7.63 0.00 0.00 5.36
4533 17310 7.828223 AGATATGCTGCTAATTTAGAATCTGGG 59.172 37.037 7.63 0.00 0.00 4.45
4534 17311 8.789825 AGATATGCTGCTAATTTAGAATCTGG 57.210 34.615 7.63 0.00 0.00 3.86
4555 17332 4.399618 GGAGGCTCATCGCATAGTTAGATA 59.600 45.833 17.69 0.00 41.67 1.98
4556 17333 3.194542 GGAGGCTCATCGCATAGTTAGAT 59.805 47.826 17.69 0.00 41.67 1.98
4558 17335 2.560542 AGGAGGCTCATCGCATAGTTAG 59.439 50.000 17.69 0.00 41.67 2.34
4561 17338 1.069823 CAAGGAGGCTCATCGCATAGT 59.930 52.381 17.69 0.00 41.67 2.12
4562 17339 1.069823 ACAAGGAGGCTCATCGCATAG 59.930 52.381 17.69 0.00 41.67 2.23
4563 17340 1.123077 ACAAGGAGGCTCATCGCATA 58.877 50.000 17.69 0.00 41.67 3.14
4565 17342 0.674581 CAACAAGGAGGCTCATCGCA 60.675 55.000 17.69 0.00 41.67 5.10
4566 17343 1.986575 GCAACAAGGAGGCTCATCGC 61.987 60.000 17.69 6.94 38.13 4.58
4567 17344 1.372087 GGCAACAAGGAGGCTCATCG 61.372 60.000 17.69 0.00 0.00 3.84
4568 17345 2.486796 GGCAACAAGGAGGCTCATC 58.513 57.895 17.69 0.00 0.00 2.92
4569 17346 4.751431 GGCAACAAGGAGGCTCAT 57.249 55.556 17.69 6.28 0.00 2.90
4581 17358 4.037446 TGAGTTTTAAGACCACATGGCAAC 59.963 41.667 0.00 0.00 39.32 4.17
4582 17359 4.211125 TGAGTTTTAAGACCACATGGCAA 58.789 39.130 0.00 0.00 39.32 4.52
4583 17360 3.826524 TGAGTTTTAAGACCACATGGCA 58.173 40.909 0.00 0.00 39.32 4.92
4584 17361 4.218417 ACATGAGTTTTAAGACCACATGGC 59.782 41.667 23.96 0.00 38.22 4.40
4585 17362 5.390885 CGACATGAGTTTTAAGACCACATGG 60.391 44.000 23.96 12.62 38.22 3.66
4590 17691 4.024387 GCAACGACATGAGTTTTAAGACCA 60.024 41.667 0.00 0.00 0.00 4.02
4594 17695 5.095691 ACAGCAACGACATGAGTTTTAAG 57.904 39.130 0.00 0.00 0.00 1.85
4601 17702 3.038017 CAAACAACAGCAACGACATGAG 58.962 45.455 0.00 0.00 0.00 2.90
4602 17703 2.794282 GCAAACAACAGCAACGACATGA 60.794 45.455 0.00 0.00 0.00 3.07
4802 18169 1.371183 CTGGAAGGAGTCGTTGGCA 59.629 57.895 2.13 0.00 0.00 4.92
4941 18308 2.705220 CATGATCGCCGCACTGTG 59.295 61.111 2.76 2.76 0.00 3.66
5105 18472 2.443952 TCGGACATCATCCCGGCT 60.444 61.111 0.00 0.00 46.04 5.52
5189 18556 1.078848 GACGCCCTGCATGAAGTCT 60.079 57.895 0.00 0.00 0.00 3.24
5606 18997 2.126031 GACTCCGGCGTCCAGAAC 60.126 66.667 13.79 0.00 0.00 3.01
5618 19009 4.933064 CGCGAGATGCCGGACTCC 62.933 72.222 5.05 4.20 42.08 3.85
5619 19010 4.933064 CCGCGAGATGCCGGACTC 62.933 72.222 8.23 9.69 42.08 3.36
5642 19033 3.659092 TTGCCGCTGCCGTCTTTG 61.659 61.111 0.00 0.00 36.33 2.77
5685 19076 2.749839 CATCTCGCCCGGCCAAAA 60.750 61.111 2.24 0.00 0.00 2.44
5821 19215 1.380785 TACCCGGTGATCTTCGGCT 60.381 57.895 17.77 9.93 44.45 5.52
6015 19409 3.786101 CGGCATCGTGAAGTCCAG 58.214 61.111 0.00 0.00 0.00 3.86
6065 19459 4.778415 CTCGTGTCCGGCTCCGTG 62.778 72.222 7.59 0.00 37.81 4.94
6283 19709 6.809630 TCGAGATGATGAGATGGTTAGTAG 57.190 41.667 0.00 0.00 0.00 2.57
6398 20102 1.182667 TGATCACCACGAACCTCGAT 58.817 50.000 2.59 0.00 43.74 3.59
6491 20203 1.516365 CTGTCACTGTCGGTCGGAGT 61.516 60.000 0.00 0.00 0.00 3.85
6644 20356 4.400961 GAGCCCTTGGACAGCGCT 62.401 66.667 2.64 2.64 39.53 5.92
6713 20425 0.952497 CGCAGTGCTGTGACAGGAAT 60.952 55.000 15.24 8.16 43.32 3.01
6722 20446 3.299977 TACCCGTCGCAGTGCTGT 61.300 61.111 14.33 5.09 0.00 4.40
6842 20566 4.530857 GCCATCGTGTCCCCCTCG 62.531 72.222 0.00 0.00 0.00 4.63
7118 20842 2.828095 AAGTGTTGCAGCCACGCA 60.828 55.556 12.40 0.00 41.03 5.24
7130 20854 3.103080 AGGTCCTTCCTATCGAAGTGT 57.897 47.619 0.00 0.00 45.75 3.55
7247 20971 1.452953 CCCTCGGCGTCATACTAGCA 61.453 60.000 6.85 0.00 0.00 3.49
7307 21043 0.176680 CGGAGCTGATGTACAGGCTT 59.823 55.000 17.66 6.23 45.82 4.35
7311 21047 2.288091 CCATCTCGGAGCTGATGTACAG 60.288 54.545 10.29 0.00 42.97 2.74
7349 21085 2.990479 GACATTGGCGTCCCCTCT 59.010 61.111 0.00 0.00 0.00 3.69
7362 21098 2.728007 TGACTCACTGATCTCCGACAT 58.272 47.619 0.00 0.00 0.00 3.06
7391 21127 3.483869 GCTGCCCCCTCGATCCTT 61.484 66.667 0.00 0.00 0.00 3.36
7448 21187 5.533154 CGGAGATAGGAGAATCTACTGTTGT 59.467 44.000 5.00 0.00 36.33 3.32
7451 21190 5.313280 ACGGAGATAGGAGAATCTACTGT 57.687 43.478 5.00 0.00 36.33 3.55
7606 21346 8.485976 AAGAGCATTTAGACACTATCACTTTC 57.514 34.615 0.00 0.00 0.00 2.62
7625 21365 8.319057 TCCCTCTGTAAGAAAATATAAGAGCA 57.681 34.615 0.00 0.00 46.34 4.26
7638 21378 8.660295 TGTTTCTAAATACTCCCTCTGTAAGA 57.340 34.615 0.00 0.00 43.69 2.10
7644 21384 5.663556 CCCTCTGTTTCTAAATACTCCCTCT 59.336 44.000 0.00 0.00 0.00 3.69
7663 21403 8.342270 TCCTACTACAAAACTAATACTCCCTCT 58.658 37.037 0.00 0.00 0.00 3.69
7664 21404 8.530804 TCCTACTACAAAACTAATACTCCCTC 57.469 38.462 0.00 0.00 0.00 4.30
7673 21413 8.306038 TGCGTTCTAATCCTACTACAAAACTAA 58.694 33.333 0.00 0.00 0.00 2.24
7687 21427 1.258982 CGTGCAGATGCGTTCTAATCC 59.741 52.381 0.00 0.00 45.83 3.01
7697 21437 0.376152 CACATTCCTCGTGCAGATGC 59.624 55.000 0.00 0.00 42.50 3.91
7701 21441 1.204704 TCCTACACATTCCTCGTGCAG 59.795 52.381 0.00 0.00 37.93 4.41
7706 21446 6.366332 GCATTTATACTCCTACACATTCCTCG 59.634 42.308 0.00 0.00 0.00 4.63
7708 21448 6.223852 CGCATTTATACTCCTACACATTCCT 58.776 40.000 0.00 0.00 0.00 3.36
7712 21452 5.215252 AGCGCATTTATACTCCTACACAT 57.785 39.130 11.47 0.00 0.00 3.21
7715 21455 4.814234 CCAAAGCGCATTTATACTCCTACA 59.186 41.667 11.47 0.00 0.00 2.74
7718 21458 2.618709 GCCAAAGCGCATTTATACTCCT 59.381 45.455 11.47 0.00 0.00 3.69
7731 21471 5.643379 ATTGTATTATATGGGCCAAAGCG 57.357 39.130 11.89 0.00 41.24 4.68
7788 21528 2.086610 AGTTTCCACCACTTGCCATT 57.913 45.000 0.00 0.00 0.00 3.16
7838 21578 3.116174 GGAGTCCTCATAAAGGGGTCTT 58.884 50.000 0.41 0.00 46.23 3.01
7855 21595 1.958288 AAGGCATGTGGTAGAGGAGT 58.042 50.000 0.00 0.00 0.00 3.85
7858 21598 1.683011 CCCAAAGGCATGTGGTAGAGG 60.683 57.143 6.86 0.00 32.60 3.69
7876 21616 3.244387 ACAACTTCTCTTCTCAAGCTCCC 60.244 47.826 0.00 0.00 0.00 4.30
7885 21625 6.291377 TCAAAGCATGTACAACTTCTCTTCT 58.709 36.000 13.19 0.00 0.00 2.85
7904 21644 1.413812 ACCCAAAGGCAGCTTTCAAAG 59.586 47.619 0.00 0.00 36.11 2.77
7905 21645 1.494960 ACCCAAAGGCAGCTTTCAAA 58.505 45.000 0.00 0.00 36.11 2.69
7906 21646 1.138661 CAACCCAAAGGCAGCTTTCAA 59.861 47.619 0.00 0.00 36.11 2.69
7907 21647 0.752054 CAACCCAAAGGCAGCTTTCA 59.248 50.000 0.00 0.00 36.11 2.69
7908 21648 0.601046 GCAACCCAAAGGCAGCTTTC 60.601 55.000 0.00 0.00 36.11 2.62
7909 21649 1.447217 GCAACCCAAAGGCAGCTTT 59.553 52.632 0.00 0.00 36.11 3.51
7910 21650 2.859981 CGCAACCCAAAGGCAGCTT 61.860 57.895 0.00 0.00 34.83 3.74
7911 21651 3.297620 CGCAACCCAAAGGCAGCT 61.298 61.111 0.00 0.00 34.83 4.24
7912 21652 4.362476 CCGCAACCCAAAGGCAGC 62.362 66.667 0.00 0.00 36.11 5.25
7914 21654 0.540830 ATTACCGCAACCCAAAGGCA 60.541 50.000 0.00 0.00 36.11 4.75
7915 21655 0.108851 CATTACCGCAACCCAAAGGC 60.109 55.000 0.00 0.00 36.11 4.35
7919 21659 0.963355 GGCTCATTACCGCAACCCAA 60.963 55.000 0.00 0.00 0.00 4.12
7920 21660 1.377987 GGCTCATTACCGCAACCCA 60.378 57.895 0.00 0.00 0.00 4.51
7955 21721 9.627123 TCCGAGATTAATTAACCATTTCTGATT 57.373 29.630 0.00 0.00 0.00 2.57
7956 21722 9.799106 ATCCGAGATTAATTAACCATTTCTGAT 57.201 29.630 0.00 0.00 0.00 2.90
8016 21783 2.593436 CCACGGCCCAACGTCTTT 60.593 61.111 0.00 0.00 46.75 2.52
8027 21794 3.047877 CCTCGAACAACCCACGGC 61.048 66.667 0.00 0.00 0.00 5.68
8063 21830 0.716591 TCTGGTAGATGGGTCTGGGT 59.283 55.000 0.00 0.00 35.87 4.51
8084 21851 4.620803 CGCCATCGCCTTCTTATATAGGTT 60.621 45.833 0.00 0.00 33.91 3.50
8102 21871 2.180276 AGAGTTTACTCCACTCGCCAT 58.820 47.619 6.28 0.00 44.73 4.40
8107 21876 5.845391 ATGAGCTAGAGTTTACTCCACTC 57.155 43.478 6.28 10.61 43.88 3.51
8116 21885 4.100373 AGGGAGTGAATGAGCTAGAGTTT 58.900 43.478 0.00 0.00 0.00 2.66
8124 21893 0.463474 GCAGGAGGGAGTGAATGAGC 60.463 60.000 0.00 0.00 0.00 4.26
8129 21903 1.478654 GGTTTTGCAGGAGGGAGTGAA 60.479 52.381 0.00 0.00 0.00 3.18
8145 21919 4.028825 ACAGTAGATAACGGCTAGGGTTT 58.971 43.478 0.00 0.00 0.00 3.27
8158 21932 8.572185 GCAACATAGAGAGATGAACAGTAGATA 58.428 37.037 0.00 0.00 0.00 1.98
8181 21955 1.077787 ATGGGATCGCCGAAAGCAA 60.078 52.632 7.38 0.00 44.04 3.91
8209 21983 4.101790 CGACCAACCGTGCATGCC 62.102 66.667 16.68 5.63 0.00 4.40
8252 22027 0.911769 TGGGCAGGATCTCGAACAAT 59.088 50.000 0.00 0.00 0.00 2.71
8271 22046 4.404185 AAAACCTTATTGCCCTTCTCCT 57.596 40.909 0.00 0.00 0.00 3.69
8294 22069 2.741092 GTGTCGAGCAACTCCCCA 59.259 61.111 0.00 0.00 0.00 4.96
8302 22077 2.255554 GAGCAGACGTGTCGAGCA 59.744 61.111 18.05 0.00 37.75 4.26
8303 22078 2.505118 GGAGCAGACGTGTCGAGC 60.505 66.667 0.00 10.99 36.33 5.03
8357 22133 1.021390 GGTGTCGATGCAGGGAAGTG 61.021 60.000 0.00 0.00 0.00 3.16
8395 22172 1.675641 CCGTGGCCTTCTTCTTGGG 60.676 63.158 3.32 0.00 0.00 4.12
8434 22211 1.771255 GATCATACCCTCTGGTTGGCT 59.229 52.381 0.00 0.00 44.75 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.