Multiple sequence alignment - TraesCS6D01G330100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G330100 chr6D 100.000 2584 0 0 1 2584 433604800 433607383 0.000000e+00 4772.0
1 TraesCS6D01G330100 chr6D 91.892 703 52 3 1873 2575 82731591 82732288 0.000000e+00 977.0
2 TraesCS6D01G330100 chr6D 86.272 692 81 4 1894 2584 24337460 24336782 0.000000e+00 739.0
3 TraesCS6D01G330100 chr6D 85.734 715 84 7 1873 2584 24433127 24433826 0.000000e+00 739.0
4 TraesCS6D01G330100 chr6D 97.386 153 4 0 1874 2026 433620142 433620294 7.090000e-66 261.0
5 TraesCS6D01G330100 chr6A 92.036 992 67 6 730 1710 579806589 579807579 0.000000e+00 1384.0
6 TraesCS6D01G330100 chr6A 97.826 46 1 0 835 880 579806653 579806698 2.130000e-11 80.5
7 TraesCS6D01G330100 chr6B 91.332 946 71 4 826 1762 655250325 655251268 0.000000e+00 1282.0
8 TraesCS6D01G330100 chr6B 85.614 709 87 10 1874 2575 157239603 157240303 0.000000e+00 730.0
9 TraesCS6D01G330100 chr6B 94.118 170 8 2 77 244 696483554 696483385 9.170000e-65 257.0
10 TraesCS6D01G330100 chr6B 89.744 117 11 1 1755 1870 655251298 655251414 5.760000e-32 148.0
11 TraesCS6D01G330100 chr6B 98.667 75 1 0 1 75 655147716 655147790 1.610000e-27 134.0
12 TraesCS6D01G330100 chr6B 98.667 75 1 0 1 75 655181886 655181960 1.610000e-27 134.0
13 TraesCS6D01G330100 chr6B 93.478 46 3 0 999 1044 655250439 655250484 4.610000e-08 69.4
14 TraesCS6D01G330100 chr6B 100.000 34 0 0 835 868 655147920 655147953 2.150000e-06 63.9
15 TraesCS6D01G330100 chr6B 100.000 34 0 0 835 868 655182090 655182123 2.150000e-06 63.9
16 TraesCS6D01G330100 chr7A 94.649 598 26 2 1993 2584 680593217 680592620 0.000000e+00 922.0
17 TraesCS6D01G330100 chr7A 87.972 715 71 9 1872 2584 155495874 155495173 0.000000e+00 830.0
18 TraesCS6D01G330100 chr7D 88.006 692 78 3 1894 2584 599929591 599930278 0.000000e+00 813.0
19 TraesCS6D01G330100 chr2A 95.437 504 23 0 2072 2575 1287312 1287815 0.000000e+00 804.0
20 TraesCS6D01G330100 chr1A 86.154 715 91 6 1873 2584 535715720 535715011 0.000000e+00 765.0
21 TraesCS6D01G330100 chr1A 91.257 183 14 2 60 240 377500412 377500230 5.520000e-62 248.0
22 TraesCS6D01G330100 chr1A 87.273 55 7 0 1778 1832 82101244 82101298 2.150000e-06 63.9
23 TraesCS6D01G330100 chr2B 84.393 692 100 6 1874 2562 625926657 625925971 0.000000e+00 673.0
24 TraesCS6D01G330100 chr2B 91.408 419 29 6 240 653 742698582 742698166 3.730000e-158 568.0
25 TraesCS6D01G330100 chr2B 87.846 469 44 12 197 653 665444234 665444701 2.930000e-149 538.0
26 TraesCS6D01G330100 chr2B 94.048 168 8 2 75 241 550975114 550974948 1.190000e-63 254.0
27 TraesCS6D01G330100 chr2D 92.435 423 25 5 240 656 556347805 556347384 4.760000e-167 597.0
28 TraesCS6D01G330100 chr4D 91.607 417 30 4 242 653 468904147 468904563 2.880000e-159 571.0
29 TraesCS6D01G330100 chr3D 91.429 420 26 8 242 653 388518072 388517655 3.730000e-158 568.0
30 TraesCS6D01G330100 chr3D 95.152 165 7 1 77 240 217587560 217587724 2.550000e-65 259.0
31 TraesCS6D01G330100 chr1D 91.408 419 28 7 241 653 317596345 317595929 3.730000e-158 568.0
32 TraesCS6D01G330100 chrUn 90.995 422 26 9 242 656 85302955 85303371 2.250000e-155 558.0
33 TraesCS6D01G330100 chr5D 90.802 424 30 6 241 657 557000007 556999586 2.250000e-155 558.0
34 TraesCS6D01G330100 chr5D 90.521 422 32 5 242 656 410252290 410251870 3.760000e-153 551.0
35 TraesCS6D01G330100 chr5D 92.778 180 10 3 64 241 420206030 420206208 9.170000e-65 257.0
36 TraesCS6D01G330100 chr5D 93.064 173 10 2 76 247 181626277 181626106 4.270000e-63 252.0
37 TraesCS6D01G330100 chr5D 84.524 84 12 1 1750 1832 51930898 51930815 5.930000e-12 82.4
38 TraesCS6D01G330100 chr5B 82.808 349 53 5 1874 2220 123022131 123021788 3.230000e-79 305.0
39 TraesCS6D01G330100 chr5B 93.529 170 10 1 72 240 427931371 427931202 4.270000e-63 252.0
40 TraesCS6D01G330100 chr5B 82.278 79 5 4 1801 1870 55095789 55095711 2.780000e-05 60.2
41 TraesCS6D01G330100 chr4B 95.122 164 8 0 77 240 352122371 352122534 2.550000e-65 259.0
42 TraesCS6D01G330100 chr4A 94.118 170 9 1 76 244 582530142 582529973 9.170000e-65 257.0
43 TraesCS6D01G330100 chr4A 74.403 461 85 24 1082 1524 607378426 607378871 1.590000e-37 167.0
44 TraesCS6D01G330100 chr5A 78.626 131 18 5 1750 1870 41160592 41160462 7.670000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G330100 chr6D 433604800 433607383 2583 False 4772.00 4772 100.000 1 2584 1 chr6D.!!$F3 2583
1 TraesCS6D01G330100 chr6D 82731591 82732288 697 False 977.00 977 91.892 1873 2575 1 chr6D.!!$F2 702
2 TraesCS6D01G330100 chr6D 24336782 24337460 678 True 739.00 739 86.272 1894 2584 1 chr6D.!!$R1 690
3 TraesCS6D01G330100 chr6D 24433127 24433826 699 False 739.00 739 85.734 1873 2584 1 chr6D.!!$F1 711
4 TraesCS6D01G330100 chr6A 579806589 579807579 990 False 732.25 1384 94.931 730 1710 2 chr6A.!!$F1 980
5 TraesCS6D01G330100 chr6B 157239603 157240303 700 False 730.00 730 85.614 1874 2575 1 chr6B.!!$F1 701
6 TraesCS6D01G330100 chr6B 655250325 655251414 1089 False 499.80 1282 91.518 826 1870 3 chr6B.!!$F4 1044
7 TraesCS6D01G330100 chr7A 680592620 680593217 597 True 922.00 922 94.649 1993 2584 1 chr7A.!!$R2 591
8 TraesCS6D01G330100 chr7A 155495173 155495874 701 True 830.00 830 87.972 1872 2584 1 chr7A.!!$R1 712
9 TraesCS6D01G330100 chr7D 599929591 599930278 687 False 813.00 813 88.006 1894 2584 1 chr7D.!!$F1 690
10 TraesCS6D01G330100 chr2A 1287312 1287815 503 False 804.00 804 95.437 2072 2575 1 chr2A.!!$F1 503
11 TraesCS6D01G330100 chr1A 535715011 535715720 709 True 765.00 765 86.154 1873 2584 1 chr1A.!!$R2 711
12 TraesCS6D01G330100 chr2B 625925971 625926657 686 True 673.00 673 84.393 1874 2562 1 chr2B.!!$R2 688

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
644 645 0.034059 AGTGAGCTCGGTCACCAAAG 59.966 55.0 21.54 0.0 46.94 2.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 1594 0.034089 GCCTGCCTTTATGGTCTGGT 60.034 55.0 0.0 0.0 38.35 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.925600 GCAATATGTTATTTGCATCACACAC 58.074 36.000 2.96 0.00 45.83 3.82
37 38 6.753279 GCAATATGTTATTTGCATCACACACT 59.247 34.615 2.96 0.00 45.83 3.55
38 39 7.914871 GCAATATGTTATTTGCATCACACACTA 59.085 33.333 2.96 0.00 45.83 2.74
39 40 9.786105 CAATATGTTATTTGCATCACACACTAA 57.214 29.630 0.00 0.00 0.00 2.24
46 47 9.800433 TTATTTGCATCACACACTAATATTTGG 57.200 29.630 0.00 0.00 0.00 3.28
47 48 5.247507 TGCATCACACACTAATATTTGGC 57.752 39.130 0.00 0.00 0.00 4.52
48 49 4.704057 TGCATCACACACTAATATTTGGCA 59.296 37.500 0.00 0.00 0.00 4.92
49 50 5.184671 TGCATCACACACTAATATTTGGCAA 59.815 36.000 0.00 0.00 0.00 4.52
50 51 6.098679 GCATCACACACTAATATTTGGCAAA 58.901 36.000 16.01 16.01 0.00 3.68
51 52 6.589523 GCATCACACACTAATATTTGGCAAAA 59.410 34.615 17.70 7.00 0.00 2.44
52 53 7.278424 GCATCACACACTAATATTTGGCAAAAT 59.722 33.333 17.70 4.10 39.38 1.82
53 54 8.810427 CATCACACACTAATATTTGGCAAAATC 58.190 33.333 17.70 0.00 37.23 2.17
54 55 8.121305 TCACACACTAATATTTGGCAAAATCT 57.879 30.769 17.70 3.09 37.23 2.40
55 56 8.584157 TCACACACTAATATTTGGCAAAATCTT 58.416 29.630 17.70 12.45 37.23 2.40
56 57 9.853555 CACACACTAATATTTGGCAAAATCTTA 57.146 29.630 17.70 12.88 37.23 2.10
68 69 9.823647 TTTGGCAAAATCTTAATTGTAAGTTGA 57.176 25.926 10.83 0.00 38.33 3.18
69 70 9.995003 TTGGCAAAATCTTAATTGTAAGTTGAT 57.005 25.926 0.00 0.00 38.33 2.57
84 85 8.474710 TGTAAGTTGATATTAGGTACTCCCTC 57.525 38.462 0.00 0.00 44.81 4.30
85 86 6.997942 AAGTTGATATTAGGTACTCCCTCC 57.002 41.667 0.00 0.00 44.81 4.30
86 87 5.078256 AGTTGATATTAGGTACTCCCTCCG 58.922 45.833 0.00 0.00 44.81 4.63
87 88 4.736611 TGATATTAGGTACTCCCTCCGT 57.263 45.455 0.00 0.00 44.81 4.69
88 89 5.070823 TGATATTAGGTACTCCCTCCGTT 57.929 43.478 0.00 0.00 44.81 4.44
89 90 5.075493 TGATATTAGGTACTCCCTCCGTTC 58.925 45.833 0.00 0.00 44.81 3.95
90 91 2.149973 TTAGGTACTCCCTCCGTTCC 57.850 55.000 0.00 0.00 44.81 3.62
91 92 1.302907 TAGGTACTCCCTCCGTTCCT 58.697 55.000 0.00 0.00 44.81 3.36
92 93 1.302907 AGGTACTCCCTCCGTTCCTA 58.697 55.000 0.00 0.00 40.71 2.94
93 94 1.642762 AGGTACTCCCTCCGTTCCTAA 59.357 52.381 0.00 0.00 40.71 2.69
94 95 2.043526 AGGTACTCCCTCCGTTCCTAAA 59.956 50.000 0.00 0.00 40.71 1.85
95 96 3.036819 GGTACTCCCTCCGTTCCTAAAT 58.963 50.000 0.00 0.00 0.00 1.40
96 97 4.078980 AGGTACTCCCTCCGTTCCTAAATA 60.079 45.833 0.00 0.00 40.71 1.40
97 98 4.837298 GGTACTCCCTCCGTTCCTAAATAT 59.163 45.833 0.00 0.00 0.00 1.28
98 99 5.306419 GGTACTCCCTCCGTTCCTAAATATT 59.694 44.000 0.00 0.00 0.00 1.28
99 100 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
100 101 7.015584 GGTACTCCCTCCGTTCCTAAATATTTA 59.984 40.741 7.66 7.66 0.00 1.40
101 102 7.628501 ACTCCCTCCGTTCCTAAATATTTAT 57.371 36.000 8.34 0.00 0.00 1.40
102 103 7.677892 ACTCCCTCCGTTCCTAAATATTTATC 58.322 38.462 8.34 0.61 0.00 1.75
103 104 7.513091 ACTCCCTCCGTTCCTAAATATTTATCT 59.487 37.037 8.34 0.00 0.00 1.98
104 105 8.271398 TCCCTCCGTTCCTAAATATTTATCTT 57.729 34.615 8.34 0.00 0.00 2.40
105 106 8.720537 TCCCTCCGTTCCTAAATATTTATCTTT 58.279 33.333 8.34 0.00 0.00 2.52
106 107 9.000486 CCCTCCGTTCCTAAATATTTATCTTTC 58.000 37.037 8.34 0.00 0.00 2.62
107 108 9.780186 CCTCCGTTCCTAAATATTTATCTTTCT 57.220 33.333 8.34 0.00 0.00 2.52
135 136 9.537848 GAAATTTTAACAAGTGACTACATACGG 57.462 33.333 0.00 0.00 0.00 4.02
136 137 8.836268 AATTTTAACAAGTGACTACATACGGA 57.164 30.769 0.00 0.00 0.00 4.69
137 138 7.878477 TTTTAACAAGTGACTACATACGGAG 57.122 36.000 0.00 0.00 0.00 4.63
138 139 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
139 140 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
140 141 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
141 142 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
142 143 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
143 144 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
144 145 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
145 146 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
146 147 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
147 148 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
148 149 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
149 150 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
150 151 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
151 152 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
152 153 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
153 154 3.679389 ACGGAGCAAAATGAGTGAATCT 58.321 40.909 0.00 0.00 0.00 2.40
154 155 4.832248 ACGGAGCAAAATGAGTGAATCTA 58.168 39.130 0.00 0.00 0.00 1.98
155 156 4.631813 ACGGAGCAAAATGAGTGAATCTAC 59.368 41.667 0.00 0.00 0.00 2.59
156 157 4.631377 CGGAGCAAAATGAGTGAATCTACA 59.369 41.667 0.00 0.00 0.00 2.74
157 158 5.446473 CGGAGCAAAATGAGTGAATCTACAC 60.446 44.000 0.00 0.00 40.60 2.90
170 171 8.894768 AGTGAATCTACACTCTAAAATATGCC 57.105 34.615 0.00 0.00 46.36 4.40
171 172 8.709308 AGTGAATCTACACTCTAAAATATGCCT 58.291 33.333 0.00 0.00 46.36 4.75
172 173 9.982651 GTGAATCTACACTCTAAAATATGCCTA 57.017 33.333 0.00 0.00 37.73 3.93
188 189 9.764363 AAATATGCCTATATACATCCGTATGTG 57.236 33.333 3.56 0.00 45.99 3.21
189 190 5.592104 TGCCTATATACATCCGTATGTGG 57.408 43.478 3.56 0.00 45.99 4.17
190 191 5.020795 TGCCTATATACATCCGTATGTGGT 58.979 41.667 3.56 0.00 45.99 4.16
191 192 6.189133 TGCCTATATACATCCGTATGTGGTA 58.811 40.000 3.56 0.00 45.99 3.25
192 193 6.320418 TGCCTATATACATCCGTATGTGGTAG 59.680 42.308 3.56 3.69 45.99 3.18
193 194 6.320672 GCCTATATACATCCGTATGTGGTAGT 59.679 42.308 3.56 0.00 45.99 2.73
194 195 7.147949 GCCTATATACATCCGTATGTGGTAGTT 60.148 40.741 3.56 0.00 45.99 2.24
195 196 9.399797 CCTATATACATCCGTATGTGGTAGTTA 57.600 37.037 3.56 0.00 45.99 2.24
199 200 8.827177 ATACATCCGTATGTGGTAGTTATTTG 57.173 34.615 3.56 0.00 45.99 2.32
200 201 6.880484 ACATCCGTATGTGGTAGTTATTTGA 58.120 36.000 0.00 0.00 44.79 2.69
201 202 7.332557 ACATCCGTATGTGGTAGTTATTTGAA 58.667 34.615 0.00 0.00 44.79 2.69
202 203 7.825270 ACATCCGTATGTGGTAGTTATTTGAAA 59.175 33.333 0.00 0.00 44.79 2.69
203 204 8.836413 CATCCGTATGTGGTAGTTATTTGAAAT 58.164 33.333 0.00 0.00 0.00 2.17
238 239 9.927081 AGACAAATATTTAGAAATGGATGGAGT 57.073 29.630 0.00 0.00 0.00 3.85
244 245 7.937700 ATTTAGAAATGGATGGAGTAGGAGA 57.062 36.000 0.00 0.00 0.00 3.71
245 246 7.749377 TTTAGAAATGGATGGAGTAGGAGAA 57.251 36.000 0.00 0.00 0.00 2.87
246 247 7.937700 TTAGAAATGGATGGAGTAGGAGAAT 57.062 36.000 0.00 0.00 0.00 2.40
247 248 6.185114 AGAAATGGATGGAGTAGGAGAATG 57.815 41.667 0.00 0.00 0.00 2.67
248 249 4.989875 AATGGATGGAGTAGGAGAATGG 57.010 45.455 0.00 0.00 0.00 3.16
249 250 2.050144 TGGATGGAGTAGGAGAATGGC 58.950 52.381 0.00 0.00 0.00 4.40
250 251 1.001406 GGATGGAGTAGGAGAATGGCG 59.999 57.143 0.00 0.00 0.00 5.69
251 252 1.689273 GATGGAGTAGGAGAATGGCGT 59.311 52.381 0.00 0.00 0.00 5.68
252 253 1.568504 TGGAGTAGGAGAATGGCGTT 58.431 50.000 0.00 0.00 0.00 4.84
253 254 1.906574 TGGAGTAGGAGAATGGCGTTT 59.093 47.619 0.00 0.00 0.00 3.60
254 255 2.304761 TGGAGTAGGAGAATGGCGTTTT 59.695 45.455 0.00 0.00 0.00 2.43
255 256 2.678336 GGAGTAGGAGAATGGCGTTTTG 59.322 50.000 0.00 0.00 0.00 2.44
256 257 2.678336 GAGTAGGAGAATGGCGTTTTGG 59.322 50.000 0.00 0.00 0.00 3.28
257 258 2.304761 AGTAGGAGAATGGCGTTTTGGA 59.695 45.455 0.00 0.00 0.00 3.53
258 259 1.826385 AGGAGAATGGCGTTTTGGAG 58.174 50.000 0.00 0.00 0.00 3.86
259 260 0.811281 GGAGAATGGCGTTTTGGAGG 59.189 55.000 0.00 0.00 0.00 4.30
260 261 1.613255 GGAGAATGGCGTTTTGGAGGA 60.613 52.381 0.00 0.00 0.00 3.71
261 262 1.468914 GAGAATGGCGTTTTGGAGGAC 59.531 52.381 0.00 0.00 0.00 3.85
262 263 0.168128 GAATGGCGTTTTGGAGGACG 59.832 55.000 0.00 0.00 41.89 4.79
263 264 0.250553 AATGGCGTTTTGGAGGACGA 60.251 50.000 0.00 0.00 41.53 4.20
264 265 0.673644 ATGGCGTTTTGGAGGACGAG 60.674 55.000 0.00 0.00 41.53 4.18
265 266 2.677979 GGCGTTTTGGAGGACGAGC 61.678 63.158 0.00 0.00 41.53 5.03
266 267 1.668151 GCGTTTTGGAGGACGAGCT 60.668 57.895 0.00 0.00 41.53 4.09
267 268 1.627550 GCGTTTTGGAGGACGAGCTC 61.628 60.000 2.73 2.73 41.53 4.09
268 269 1.014564 CGTTTTGGAGGACGAGCTCC 61.015 60.000 8.47 0.00 41.53 4.70
269 270 0.034896 GTTTTGGAGGACGAGCTCCA 59.965 55.000 8.47 0.00 46.84 3.86
271 272 3.621225 TGGAGGACGAGCTCCATG 58.379 61.111 8.47 0.00 44.02 3.66
272 273 2.060383 TGGAGGACGAGCTCCATGG 61.060 63.158 4.97 4.97 44.02 3.66
273 274 1.758514 GGAGGACGAGCTCCATGGA 60.759 63.158 15.27 15.27 42.46 3.41
274 275 1.739049 GAGGACGAGCTCCATGGAG 59.261 63.158 33.73 33.73 42.46 3.86
275 276 1.743321 GAGGACGAGCTCCATGGAGG 61.743 65.000 36.92 25.00 42.46 4.30
276 277 2.107953 GACGAGCTCCATGGAGGC 59.892 66.667 36.92 28.76 42.19 4.70
277 278 3.453070 GACGAGCTCCATGGAGGCC 62.453 68.421 36.92 23.97 42.19 5.19
278 279 3.160047 CGAGCTCCATGGAGGCCT 61.160 66.667 36.92 27.78 42.19 5.19
279 280 2.739996 CGAGCTCCATGGAGGCCTT 61.740 63.158 36.92 17.72 42.19 4.35
280 281 1.611965 GAGCTCCATGGAGGCCTTT 59.388 57.895 36.92 17.10 42.19 3.11
281 282 0.839946 GAGCTCCATGGAGGCCTTTA 59.160 55.000 36.92 4.58 42.19 1.85
282 283 1.423161 GAGCTCCATGGAGGCCTTTAT 59.577 52.381 36.92 16.48 42.19 1.40
283 284 1.855599 AGCTCCATGGAGGCCTTTATT 59.144 47.619 36.92 13.75 42.19 1.40
284 285 2.245806 AGCTCCATGGAGGCCTTTATTT 59.754 45.455 36.92 13.14 42.19 1.40
285 286 3.033909 GCTCCATGGAGGCCTTTATTTT 58.966 45.455 36.92 0.00 42.19 1.82
286 287 3.452264 GCTCCATGGAGGCCTTTATTTTT 59.548 43.478 36.92 0.00 42.19 1.94
287 288 4.681512 GCTCCATGGAGGCCTTTATTTTTG 60.682 45.833 36.92 12.89 42.19 2.44
288 289 4.682563 TCCATGGAGGCCTTTATTTTTGA 58.317 39.130 11.44 0.00 37.29 2.69
289 290 5.090139 TCCATGGAGGCCTTTATTTTTGAA 58.910 37.500 11.44 0.00 37.29 2.69
290 291 5.545723 TCCATGGAGGCCTTTATTTTTGAAA 59.454 36.000 11.44 0.00 37.29 2.69
291 292 6.043706 TCCATGGAGGCCTTTATTTTTGAAAA 59.956 34.615 11.44 0.00 37.29 2.29
292 293 6.885918 CCATGGAGGCCTTTATTTTTGAAAAT 59.114 34.615 6.77 6.88 41.24 1.82
293 294 7.394077 CCATGGAGGCCTTTATTTTTGAAAATT 59.606 33.333 6.77 0.00 39.24 1.82
294 295 8.795513 CATGGAGGCCTTTATTTTTGAAAATTT 58.204 29.630 6.77 0.00 39.24 1.82
295 296 8.389779 TGGAGGCCTTTATTTTTGAAAATTTC 57.610 30.769 6.77 0.00 39.24 2.17
296 297 7.995488 TGGAGGCCTTTATTTTTGAAAATTTCA 59.005 29.630 6.77 4.03 39.24 2.69
354 355 7.801716 AAAATATGCGTGTATGTAAGGATGT 57.198 32.000 0.00 0.00 0.00 3.06
355 356 8.896320 AAAATATGCGTGTATGTAAGGATGTA 57.104 30.769 0.00 0.00 0.00 2.29
356 357 8.896320 AAATATGCGTGTATGTAAGGATGTAA 57.104 30.769 0.00 0.00 0.00 2.41
357 358 7.884816 ATATGCGTGTATGTAAGGATGTAAC 57.115 36.000 0.00 0.00 0.00 2.50
358 359 4.435425 TGCGTGTATGTAAGGATGTAACC 58.565 43.478 0.00 0.00 0.00 2.85
359 360 4.160814 TGCGTGTATGTAAGGATGTAACCT 59.839 41.667 0.00 0.00 42.69 3.50
360 361 5.360429 TGCGTGTATGTAAGGATGTAACCTA 59.640 40.000 0.00 0.00 39.62 3.08
361 362 5.689068 GCGTGTATGTAAGGATGTAACCTAC 59.311 44.000 0.00 0.00 39.62 3.18
362 363 6.681120 GCGTGTATGTAAGGATGTAACCTACA 60.681 42.308 0.00 0.00 43.80 2.74
376 377 7.809546 TGTAACCTACATGTGTGAAATTTCA 57.190 32.000 16.91 16.91 32.89 2.69
377 378 8.402798 TGTAACCTACATGTGTGAAATTTCAT 57.597 30.769 23.05 9.28 35.05 2.57
378 379 8.296000 TGTAACCTACATGTGTGAAATTTCATG 58.704 33.333 23.05 18.49 42.00 3.07
379 380 7.523293 AACCTACATGTGTGAAATTTCATGA 57.477 32.000 23.05 10.91 39.68 3.07
380 381 7.707624 ACCTACATGTGTGAAATTTCATGAT 57.292 32.000 23.05 12.57 39.68 2.45
381 382 7.541162 ACCTACATGTGTGAAATTTCATGATG 58.459 34.615 23.05 22.84 39.68 3.07
382 383 7.394077 ACCTACATGTGTGAAATTTCATGATGA 59.606 33.333 27.11 17.01 39.68 2.92
383 384 8.245491 CCTACATGTGTGAAATTTCATGATGAA 58.755 33.333 27.11 3.29 39.68 2.57
397 398 7.739022 TTCATGATGAAATACGTTGAAATGC 57.261 32.000 5.21 0.00 32.71 3.56
398 399 5.964751 TCATGATGAAATACGTTGAAATGCG 59.035 36.000 0.00 0.00 0.00 4.73
399 400 5.538067 TGATGAAATACGTTGAAATGCGA 57.462 34.783 0.00 0.00 0.00 5.10
400 401 5.320723 TGATGAAATACGTTGAAATGCGAC 58.679 37.500 0.00 0.00 0.00 5.19
401 402 4.073169 TGAAATACGTTGAAATGCGACC 57.927 40.909 0.00 0.00 0.00 4.79
402 403 3.749088 TGAAATACGTTGAAATGCGACCT 59.251 39.130 0.00 0.00 0.00 3.85
403 404 3.740044 AATACGTTGAAATGCGACCTG 57.260 42.857 0.00 0.00 0.00 4.00
404 405 2.157834 TACGTTGAAATGCGACCTGT 57.842 45.000 0.00 0.00 0.00 4.00
405 406 0.586319 ACGTTGAAATGCGACCTGTG 59.414 50.000 0.00 0.00 0.00 3.66
406 407 0.725784 CGTTGAAATGCGACCTGTGC 60.726 55.000 0.00 0.00 0.00 4.57
408 409 1.028130 TTGAAATGCGACCTGTGCAA 58.972 45.000 0.00 0.00 46.87 4.08
409 410 1.028130 TGAAATGCGACCTGTGCAAA 58.972 45.000 0.00 0.00 46.87 3.68
410 411 1.406898 TGAAATGCGACCTGTGCAAAA 59.593 42.857 0.00 0.00 46.87 2.44
411 412 2.159184 TGAAATGCGACCTGTGCAAAAA 60.159 40.909 0.00 0.00 46.87 1.94
430 431 5.549742 AAAAAGACAAATTCATGGCCTGA 57.450 34.783 3.32 2.06 0.00 3.86
431 432 4.796038 AAAGACAAATTCATGGCCTGAG 57.204 40.909 3.32 0.00 34.68 3.35
432 433 2.097825 AGACAAATTCATGGCCTGAGC 58.902 47.619 3.32 0.00 34.68 4.26
433 434 0.813184 ACAAATTCATGGCCTGAGCG 59.187 50.000 3.32 0.00 41.24 5.03
434 435 1.097232 CAAATTCATGGCCTGAGCGA 58.903 50.000 3.32 0.00 41.24 4.93
435 436 1.679680 CAAATTCATGGCCTGAGCGAT 59.320 47.619 3.32 0.00 41.24 4.58
441 442 2.469274 ATGGCCTGAGCGATGAATAG 57.531 50.000 3.32 0.00 41.24 1.73
442 443 1.123077 TGGCCTGAGCGATGAATAGT 58.877 50.000 3.32 0.00 41.24 2.12
443 444 2.316108 TGGCCTGAGCGATGAATAGTA 58.684 47.619 3.32 0.00 41.24 1.82
444 445 2.899900 TGGCCTGAGCGATGAATAGTAT 59.100 45.455 3.32 0.00 41.24 2.12
445 446 3.056536 TGGCCTGAGCGATGAATAGTATC 60.057 47.826 3.32 0.00 41.24 2.24
446 447 3.056536 GGCCTGAGCGATGAATAGTATCA 60.057 47.826 0.00 0.00 41.24 2.15
447 448 4.382470 GGCCTGAGCGATGAATAGTATCAT 60.382 45.833 0.00 0.00 41.24 2.45
448 449 4.565962 GCCTGAGCGATGAATAGTATCATG 59.434 45.833 0.00 0.00 40.08 3.07
449 450 5.718146 CCTGAGCGATGAATAGTATCATGT 58.282 41.667 0.00 0.00 40.08 3.21
450 451 5.575995 CCTGAGCGATGAATAGTATCATGTG 59.424 44.000 0.00 0.00 40.08 3.21
451 452 6.089249 TGAGCGATGAATAGTATCATGTGT 57.911 37.500 0.00 0.00 40.08 3.72
452 453 6.515832 TGAGCGATGAATAGTATCATGTGTT 58.484 36.000 0.00 0.00 40.08 3.32
453 454 7.657336 TGAGCGATGAATAGTATCATGTGTTA 58.343 34.615 0.00 0.00 40.08 2.41
454 455 8.141268 TGAGCGATGAATAGTATCATGTGTTAA 58.859 33.333 0.00 0.00 40.08 2.01
455 456 8.887036 AGCGATGAATAGTATCATGTGTTAAA 57.113 30.769 0.00 0.00 40.08 1.52
456 457 8.765219 AGCGATGAATAGTATCATGTGTTAAAC 58.235 33.333 0.00 0.00 40.08 2.01
457 458 8.547894 GCGATGAATAGTATCATGTGTTAAACA 58.452 33.333 0.00 0.00 44.79 2.83
459 460 9.869844 GATGAATAGTATCATGTGTTAAACAGC 57.130 33.333 0.00 0.00 43.64 4.40
460 461 9.618890 ATGAATAGTATCATGTGTTAAACAGCT 57.381 29.630 0.00 0.00 43.64 4.24
461 462 9.098355 TGAATAGTATCATGTGTTAAACAGCTC 57.902 33.333 0.00 0.00 43.64 4.09
462 463 8.438676 AATAGTATCATGTGTTAAACAGCTCC 57.561 34.615 0.00 0.00 43.64 4.70
463 464 5.804639 AGTATCATGTGTTAAACAGCTCCA 58.195 37.500 0.00 0.00 43.64 3.86
464 465 6.237901 AGTATCATGTGTTAAACAGCTCCAA 58.762 36.000 0.00 0.00 43.64 3.53
465 466 6.714810 AGTATCATGTGTTAAACAGCTCCAAA 59.285 34.615 0.00 0.00 43.64 3.28
466 467 6.594788 ATCATGTGTTAAACAGCTCCAAAT 57.405 33.333 0.00 0.00 43.64 2.32
467 468 6.403866 TCATGTGTTAAACAGCTCCAAATT 57.596 33.333 0.00 0.00 43.64 1.82
468 469 6.815089 TCATGTGTTAAACAGCTCCAAATTT 58.185 32.000 0.00 0.00 43.64 1.82
469 470 7.946207 TCATGTGTTAAACAGCTCCAAATTTA 58.054 30.769 0.00 0.00 43.64 1.40
470 471 8.584157 TCATGTGTTAAACAGCTCCAAATTTAT 58.416 29.630 0.00 0.00 43.64 1.40
471 472 8.863049 CATGTGTTAAACAGCTCCAAATTTATC 58.137 33.333 0.00 0.00 43.64 1.75
472 473 8.177119 TGTGTTAAACAGCTCCAAATTTATCT 57.823 30.769 0.00 0.00 33.78 1.98
473 474 8.637986 TGTGTTAAACAGCTCCAAATTTATCTT 58.362 29.630 0.00 0.00 33.78 2.40
474 475 9.476202 GTGTTAAACAGCTCCAAATTTATCTTT 57.524 29.630 0.00 0.00 0.00 2.52
490 491 4.251246 TTTTTGCACAGCCCTCGT 57.749 50.000 0.00 0.00 0.00 4.18
491 492 2.499214 TTTTTGCACAGCCCTCGTT 58.501 47.368 0.00 0.00 0.00 3.85
492 493 0.820871 TTTTTGCACAGCCCTCGTTT 59.179 45.000 0.00 0.00 0.00 3.60
493 494 0.383949 TTTTGCACAGCCCTCGTTTC 59.616 50.000 0.00 0.00 0.00 2.78
494 495 0.749818 TTTGCACAGCCCTCGTTTCA 60.750 50.000 0.00 0.00 0.00 2.69
495 496 0.749818 TTGCACAGCCCTCGTTTCAA 60.750 50.000 0.00 0.00 0.00 2.69
496 497 0.537143 TGCACAGCCCTCGTTTCAAT 60.537 50.000 0.00 0.00 0.00 2.57
497 498 0.109597 GCACAGCCCTCGTTTCAATG 60.110 55.000 0.00 0.00 0.00 2.82
498 499 0.523072 CACAGCCCTCGTTTCAATGG 59.477 55.000 0.00 0.00 0.00 3.16
499 500 0.609131 ACAGCCCTCGTTTCAATGGG 60.609 55.000 0.00 0.00 42.41 4.00
500 501 0.609131 CAGCCCTCGTTTCAATGGGT 60.609 55.000 0.00 0.00 41.59 4.51
501 502 0.112412 AGCCCTCGTTTCAATGGGTT 59.888 50.000 0.00 0.00 41.59 4.11
502 503 0.966179 GCCCTCGTTTCAATGGGTTT 59.034 50.000 0.00 0.00 41.59 3.27
503 504 1.343142 GCCCTCGTTTCAATGGGTTTT 59.657 47.619 0.00 0.00 41.59 2.43
504 505 2.866065 GCCCTCGTTTCAATGGGTTTTG 60.866 50.000 0.00 0.00 41.59 2.44
505 506 2.403259 CCTCGTTTCAATGGGTTTTGC 58.597 47.619 0.00 0.00 0.00 3.68
506 507 2.403259 CTCGTTTCAATGGGTTTTGCC 58.597 47.619 0.00 0.00 0.00 4.52
520 521 4.698575 GGTTTTGCCCTGAAATTTACACA 58.301 39.130 0.00 0.00 0.00 3.72
521 522 4.509970 GGTTTTGCCCTGAAATTTACACAC 59.490 41.667 0.00 0.00 0.00 3.82
522 523 5.112686 GTTTTGCCCTGAAATTTACACACA 58.887 37.500 0.00 0.00 0.00 3.72
523 524 5.543507 TTTGCCCTGAAATTTACACACAT 57.456 34.783 0.00 0.00 0.00 3.21
524 525 4.517952 TGCCCTGAAATTTACACACATG 57.482 40.909 0.00 0.00 0.00 3.21
525 526 3.894427 TGCCCTGAAATTTACACACATGT 59.106 39.130 0.00 0.00 43.30 3.21
540 541 4.707030 CACATGTGTGTTATGCCTTCAT 57.293 40.909 18.03 0.00 40.96 2.57
541 542 4.417506 CACATGTGTGTTATGCCTTCATG 58.582 43.478 18.03 0.00 40.96 3.07
542 543 3.119388 ACATGTGTGTTATGCCTTCATGC 60.119 43.478 0.00 0.00 34.01 4.06
543 544 2.512705 TGTGTGTTATGCCTTCATGCA 58.487 42.857 0.00 0.00 46.94 3.96
544 545 2.228582 TGTGTGTTATGCCTTCATGCAC 59.771 45.455 0.00 0.00 45.48 4.57
545 546 2.228582 GTGTGTTATGCCTTCATGCACA 59.771 45.455 0.00 10.87 45.48 4.57
546 547 3.090790 TGTGTTATGCCTTCATGCACAT 58.909 40.909 0.00 0.00 45.48 3.21
547 548 3.129113 TGTGTTATGCCTTCATGCACATC 59.871 43.478 0.00 0.00 45.48 3.06
548 549 3.379372 GTGTTATGCCTTCATGCACATCT 59.621 43.478 0.00 0.00 45.48 2.90
549 550 3.379057 TGTTATGCCTTCATGCACATCTG 59.621 43.478 0.00 0.00 45.48 2.90
550 551 2.139323 ATGCCTTCATGCACATCTGT 57.861 45.000 0.00 0.00 45.48 3.41
551 552 2.785540 TGCCTTCATGCACATCTGTA 57.214 45.000 0.00 0.00 36.04 2.74
552 553 2.358957 TGCCTTCATGCACATCTGTAC 58.641 47.619 0.00 0.00 36.04 2.90
553 554 2.026915 TGCCTTCATGCACATCTGTACT 60.027 45.455 0.00 0.00 36.04 2.73
554 555 3.012518 GCCTTCATGCACATCTGTACTT 58.987 45.455 0.00 0.00 0.00 2.24
555 556 3.441572 GCCTTCATGCACATCTGTACTTT 59.558 43.478 0.00 0.00 0.00 2.66
556 557 4.082571 GCCTTCATGCACATCTGTACTTTT 60.083 41.667 0.00 0.00 0.00 2.27
557 558 5.565439 GCCTTCATGCACATCTGTACTTTTT 60.565 40.000 0.00 0.00 0.00 1.94
620 621 9.643693 TGAAATTTGAATTTTGAATCTAGAGGC 57.356 29.630 0.00 0.00 38.64 4.70
621 622 9.091784 GAAATTTGAATTTTGAATCTAGAGGCC 57.908 33.333 0.00 0.00 38.64 5.19
622 623 7.968014 ATTTGAATTTTGAATCTAGAGGCCT 57.032 32.000 3.86 3.86 0.00 5.19
623 624 7.396540 TTTGAATTTTGAATCTAGAGGCCTC 57.603 36.000 26.22 26.22 0.00 4.70
624 625 5.440610 TGAATTTTGAATCTAGAGGCCTCC 58.559 41.667 29.54 13.20 0.00 4.30
625 626 5.044919 TGAATTTTGAATCTAGAGGCCTCCA 60.045 40.000 29.54 15.79 0.00 3.86
626 627 4.494091 TTTTGAATCTAGAGGCCTCCAG 57.506 45.455 29.54 25.16 0.00 3.86
627 628 2.856760 TGAATCTAGAGGCCTCCAGT 57.143 50.000 29.54 13.83 0.00 4.00
628 629 2.392662 TGAATCTAGAGGCCTCCAGTG 58.607 52.381 29.54 16.17 0.00 3.66
629 630 2.023984 TGAATCTAGAGGCCTCCAGTGA 60.024 50.000 29.54 20.62 0.00 3.41
630 631 2.380064 ATCTAGAGGCCTCCAGTGAG 57.620 55.000 29.54 17.63 38.42 3.51
631 632 0.396417 TCTAGAGGCCTCCAGTGAGC 60.396 60.000 29.54 1.86 37.29 4.26
632 633 0.396974 CTAGAGGCCTCCAGTGAGCT 60.397 60.000 29.54 10.66 37.29 4.09
633 634 0.396417 TAGAGGCCTCCAGTGAGCTC 60.396 60.000 29.54 6.82 37.29 4.09
634 635 3.073735 AGGCCTCCAGTGAGCTCG 61.074 66.667 9.64 0.00 37.29 5.03
635 636 4.154347 GGCCTCCAGTGAGCTCGG 62.154 72.222 9.64 4.39 37.29 4.63
636 637 3.386237 GCCTCCAGTGAGCTCGGT 61.386 66.667 9.64 0.00 37.29 4.69
637 638 2.888863 CCTCCAGTGAGCTCGGTC 59.111 66.667 9.64 2.22 37.29 4.79
638 639 1.979155 CCTCCAGTGAGCTCGGTCA 60.979 63.158 9.64 0.00 37.29 4.02
639 640 1.214062 CTCCAGTGAGCTCGGTCAC 59.786 63.158 18.61 18.61 46.22 3.67
640 641 2.219325 CTCCAGTGAGCTCGGTCACC 62.219 65.000 21.54 7.76 46.94 4.02
641 642 2.574018 CCAGTGAGCTCGGTCACCA 61.574 63.158 21.54 0.00 46.94 4.17
642 643 1.367471 CAGTGAGCTCGGTCACCAA 59.633 57.895 21.54 0.00 46.94 3.67
643 644 0.249868 CAGTGAGCTCGGTCACCAAA 60.250 55.000 21.54 0.00 46.94 3.28
644 645 0.034059 AGTGAGCTCGGTCACCAAAG 59.966 55.000 21.54 0.00 46.94 2.77
645 646 0.951040 GTGAGCTCGGTCACCAAAGG 60.951 60.000 16.18 0.00 40.96 3.11
646 647 2.032681 AGCTCGGTCACCAAAGGC 59.967 61.111 0.00 0.00 0.00 4.35
647 648 2.281484 GCTCGGTCACCAAAGGCA 60.281 61.111 0.00 0.00 0.00 4.75
648 649 1.896660 GCTCGGTCACCAAAGGCAA 60.897 57.895 0.00 0.00 0.00 4.52
649 650 1.244019 GCTCGGTCACCAAAGGCAAT 61.244 55.000 0.00 0.00 0.00 3.56
650 651 1.247567 CTCGGTCACCAAAGGCAATT 58.752 50.000 0.00 0.00 0.00 2.32
651 652 1.613437 CTCGGTCACCAAAGGCAATTT 59.387 47.619 0.00 0.00 0.00 1.82
652 653 1.611491 TCGGTCACCAAAGGCAATTTC 59.389 47.619 0.00 0.00 0.00 2.17
653 654 1.613437 CGGTCACCAAAGGCAATTTCT 59.387 47.619 0.00 0.00 0.00 2.52
654 655 2.607771 CGGTCACCAAAGGCAATTTCTG 60.608 50.000 0.00 0.00 0.00 3.02
655 656 2.627699 GGTCACCAAAGGCAATTTCTGA 59.372 45.455 0.00 0.00 0.00 3.27
656 657 3.305608 GGTCACCAAAGGCAATTTCTGAG 60.306 47.826 0.00 0.00 0.00 3.35
657 658 2.892852 TCACCAAAGGCAATTTCTGAGG 59.107 45.455 0.00 0.00 0.00 3.86
658 659 2.028748 CACCAAAGGCAATTTCTGAGGG 60.029 50.000 0.00 0.00 0.00 4.30
659 660 2.158325 ACCAAAGGCAATTTCTGAGGGA 60.158 45.455 0.00 0.00 0.00 4.20
660 661 2.494870 CCAAAGGCAATTTCTGAGGGAG 59.505 50.000 0.00 0.00 0.00 4.30
661 662 3.160269 CAAAGGCAATTTCTGAGGGAGT 58.840 45.455 0.00 0.00 0.00 3.85
662 663 4.335416 CAAAGGCAATTTCTGAGGGAGTA 58.665 43.478 0.00 0.00 0.00 2.59
663 664 3.922171 AGGCAATTTCTGAGGGAGTAG 57.078 47.619 0.00 0.00 0.00 2.57
664 665 3.185455 AGGCAATTTCTGAGGGAGTAGT 58.815 45.455 0.00 0.00 0.00 2.73
665 666 4.362677 AGGCAATTTCTGAGGGAGTAGTA 58.637 43.478 0.00 0.00 0.00 1.82
666 667 4.971924 AGGCAATTTCTGAGGGAGTAGTAT 59.028 41.667 0.00 0.00 0.00 2.12
667 668 6.143915 AGGCAATTTCTGAGGGAGTAGTATA 58.856 40.000 0.00 0.00 0.00 1.47
668 669 6.789959 AGGCAATTTCTGAGGGAGTAGTATAT 59.210 38.462 0.00 0.00 0.00 0.86
669 670 7.956315 AGGCAATTTCTGAGGGAGTAGTATATA 59.044 37.037 0.00 0.00 0.00 0.86
670 671 8.594550 GGCAATTTCTGAGGGAGTAGTATATAA 58.405 37.037 0.00 0.00 0.00 0.98
700 701 7.864108 TGGATGTTGTTGACTTGATATTAGG 57.136 36.000 0.00 0.00 0.00 2.69
701 702 7.402054 TGGATGTTGTTGACTTGATATTAGGT 58.598 34.615 0.00 0.00 0.00 3.08
702 703 8.544622 TGGATGTTGTTGACTTGATATTAGGTA 58.455 33.333 0.00 0.00 0.00 3.08
703 704 9.561069 GGATGTTGTTGACTTGATATTAGGTAT 57.439 33.333 0.00 0.00 0.00 2.73
750 751 5.448225 TAAACATGTTTGACGTTAAACGCCA 60.448 36.000 29.72 12.67 42.11 5.69
796 797 2.546778 GCGGTTGAACGGATGAGATTA 58.453 47.619 7.09 0.00 0.00 1.75
809 810 6.477033 ACGGATGAGATTAGTTGAATTTCTCG 59.523 38.462 0.00 0.00 31.36 4.04
916 924 4.865776 TCTTTACATGCAAAGGGAAAACG 58.134 39.130 16.64 0.00 36.39 3.60
1038 1046 8.885494 ATTACGTATATATCCCGTACTCTCTC 57.115 38.462 13.95 0.00 36.86 3.20
1068 1076 3.754965 TCTCATTGCCAGCTACACTTTT 58.245 40.909 0.00 0.00 0.00 2.27
1151 1159 1.069049 GCTTGGTGTTCATGGTTGCTT 59.931 47.619 0.00 0.00 0.00 3.91
1206 1214 4.743493 CAGTGTAAGAAAGGAGAGCTCTC 58.257 47.826 31.89 31.89 42.14 3.20
1224 1232 3.857052 TCTCGCGTGTATTTTCTCCATT 58.143 40.909 5.77 0.00 0.00 3.16
1234 1242 9.706691 CGTGTATTTTCTCCATTAGGTGTATAT 57.293 33.333 0.00 0.00 35.89 0.86
1272 1280 5.406175 GCACTGACAAACACATTGCAAATAT 59.594 36.000 1.71 0.00 43.13 1.28
1277 1285 7.665690 TGACAAACACATTGCAAATATTAGGT 58.334 30.769 1.71 0.00 43.13 3.08
1302 1310 0.466922 CATGGATGGAAGGAGCCACC 60.467 60.000 0.00 0.00 41.56 4.61
1309 1317 3.358076 GAAGGAGCCACCGAGACCG 62.358 68.421 0.00 0.00 44.74 4.79
1493 1504 0.975544 CACGAGACGAGTGTAAAGCG 59.024 55.000 0.00 0.00 35.08 4.68
1527 1538 0.530288 CAACCCCAAATGTTAGGCCG 59.470 55.000 0.00 0.00 0.00 6.13
1543 1554 1.715585 CCGAACTGGCGCTACAATG 59.284 57.895 7.64 0.00 0.00 2.82
1604 1615 1.410648 CCAGACCATAAAGGCAGGCAT 60.411 52.381 0.00 0.00 43.14 4.40
1607 1618 1.410153 GACCATAAAGGCAGGCATTGG 59.590 52.381 0.00 0.00 43.14 3.16
1636 1647 6.237901 CCCTTCAATATTCGATGTAATGGGA 58.762 40.000 0.00 0.00 0.00 4.37
1660 1671 9.886132 GGAGAACTCCTTTTGTAAAGATACATA 57.114 33.333 12.98 0.00 46.16 2.29
1680 1691 7.689953 ACATAAGTTTATTCGTCACGGATAC 57.310 36.000 0.00 0.00 25.98 2.24
1723 1735 4.940463 AGATTGCATGAATTGTGTATGCC 58.060 39.130 0.00 0.00 44.91 4.40
1728 1740 3.491964 GCATGAATTGTGTATGCCATGCT 60.492 43.478 15.32 0.00 43.50 3.79
1762 1812 0.385390 AAGAGCGGTGCCTTTGTTTG 59.615 50.000 0.00 0.00 0.00 2.93
1774 1824 3.356290 CCTTTGTTTGGGCTGTAGCTAT 58.644 45.455 0.00 0.00 41.70 2.97
1777 1827 3.712016 TGTTTGGGCTGTAGCTATTGA 57.288 42.857 0.00 0.00 41.70 2.57
1780 1830 4.640201 TGTTTGGGCTGTAGCTATTGATTC 59.360 41.667 0.00 0.00 41.70 2.52
1781 1831 4.778213 TTGGGCTGTAGCTATTGATTCT 57.222 40.909 0.00 0.00 41.70 2.40
1783 1833 5.887214 TGGGCTGTAGCTATTGATTCTTA 57.113 39.130 0.00 0.00 41.70 2.10
1816 1867 9.688592 AGACATTTTGAAATCAGAATCTCAAAC 57.311 29.630 5.28 0.00 37.48 2.93
1832 1883 6.317789 TCTCAAACAAACACATCAGATTCC 57.682 37.500 0.00 0.00 0.00 3.01
1870 1921 6.656902 TCTGAAGATTGAACTATCAGGCAAT 58.343 36.000 0.00 0.00 38.39 3.56
1982 2038 1.227674 CGCAGGCCCTTGATCCTAC 60.228 63.158 0.00 0.00 0.00 3.18
2220 2282 0.584396 TCGATGTGTTTGGTGCGTTC 59.416 50.000 0.00 0.00 0.00 3.95
2241 2305 1.002773 GTGTTGGACCGGATTACAGGT 59.997 52.381 9.46 0.00 46.44 4.00
2275 2339 4.507756 GCGCTGATATTGTCACAATAGACA 59.492 41.667 15.42 15.22 46.12 3.41
2403 2467 4.699522 GGACACGGTGGCCTGTCC 62.700 72.222 25.93 22.18 44.12 4.02
2516 2580 2.958355 TCTGTGTATGCGATCAGATCCA 59.042 45.455 4.73 4.65 32.95 3.41
2562 2626 2.292918 ACCCATAGTGAGAGGTGCCTTA 60.293 50.000 0.00 0.00 0.00 2.69
2578 2642 7.357471 AGGTGCCTTAAAGATAATGAAGGATT 58.643 34.615 3.71 0.00 40.88 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 9.786105 TTAGTGTGTGATGCAAATAACATATTG 57.214 29.630 0.00 0.00 0.00 1.90
20 21 9.800433 CCAAATATTAGTGTGTGATGCAAATAA 57.200 29.630 0.00 0.00 0.00 1.40
21 22 7.920151 GCCAAATATTAGTGTGTGATGCAAATA 59.080 33.333 0.00 0.00 0.00 1.40
22 23 6.757947 GCCAAATATTAGTGTGTGATGCAAAT 59.242 34.615 0.00 0.00 0.00 2.32
23 24 6.098679 GCCAAATATTAGTGTGTGATGCAAA 58.901 36.000 0.00 0.00 0.00 3.68
24 25 5.184671 TGCCAAATATTAGTGTGTGATGCAA 59.815 36.000 0.00 0.00 0.00 4.08
25 26 4.704057 TGCCAAATATTAGTGTGTGATGCA 59.296 37.500 0.00 0.00 0.00 3.96
26 27 5.247507 TGCCAAATATTAGTGTGTGATGC 57.752 39.130 0.00 0.00 0.00 3.91
27 28 8.706492 ATTTTGCCAAATATTAGTGTGTGATG 57.294 30.769 0.00 0.00 30.22 3.07
28 29 8.752187 AGATTTTGCCAAATATTAGTGTGTGAT 58.248 29.630 0.00 0.00 32.35 3.06
29 30 8.121305 AGATTTTGCCAAATATTAGTGTGTGA 57.879 30.769 0.00 0.00 32.35 3.58
30 31 8.761575 AAGATTTTGCCAAATATTAGTGTGTG 57.238 30.769 1.58 0.00 33.03 3.82
42 43 9.823647 TCAACTTACAATTAAGATTTTGCCAAA 57.176 25.926 0.00 0.00 37.49 3.28
43 44 9.995003 ATCAACTTACAATTAAGATTTTGCCAA 57.005 25.926 0.00 0.00 37.49 4.52
74 75 2.149973 TTAGGAACGGAGGGAGTACC 57.850 55.000 0.00 0.00 40.67 3.34
75 76 6.416631 AATATTTAGGAACGGAGGGAGTAC 57.583 41.667 0.00 0.00 0.00 2.73
76 77 8.731591 ATAAATATTTAGGAACGGAGGGAGTA 57.268 34.615 13.15 0.00 0.00 2.59
77 78 5.970501 AAATATTTAGGAACGGAGGGAGT 57.029 39.130 0.00 0.00 0.00 3.85
78 79 7.908453 AGATAAATATTTAGGAACGGAGGGAG 58.092 38.462 13.15 0.00 0.00 4.30
79 80 7.867160 AGATAAATATTTAGGAACGGAGGGA 57.133 36.000 13.15 0.00 0.00 4.20
80 81 8.919777 AAAGATAAATATTTAGGAACGGAGGG 57.080 34.615 13.15 0.00 0.00 4.30
81 82 9.780186 AGAAAGATAAATATTTAGGAACGGAGG 57.220 33.333 13.15 0.00 0.00 4.30
109 110 9.537848 CCGTATGTAGTCACTTGTTAAAATTTC 57.462 33.333 0.00 0.00 0.00 2.17
110 111 9.275398 TCCGTATGTAGTCACTTGTTAAAATTT 57.725 29.630 0.00 0.00 0.00 1.82
111 112 8.836268 TCCGTATGTAGTCACTTGTTAAAATT 57.164 30.769 0.00 0.00 0.00 1.82
112 113 7.064253 GCTCCGTATGTAGTCACTTGTTAAAAT 59.936 37.037 0.00 0.00 0.00 1.82
113 114 6.366877 GCTCCGTATGTAGTCACTTGTTAAAA 59.633 38.462 0.00 0.00 0.00 1.52
114 115 5.865552 GCTCCGTATGTAGTCACTTGTTAAA 59.134 40.000 0.00 0.00 0.00 1.52
115 116 5.047872 TGCTCCGTATGTAGTCACTTGTTAA 60.048 40.000 0.00 0.00 0.00 2.01
116 117 4.460034 TGCTCCGTATGTAGTCACTTGTTA 59.540 41.667 0.00 0.00 0.00 2.41
117 118 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
118 119 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
119 120 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
120 121 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
121 122 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
122 123 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
123 124 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
124 125 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
125 126 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
126 127 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
127 128 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
128 129 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
129 130 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
130 131 5.431765 AGATTCACTCATTTTGCTCCGTAT 58.568 37.500 0.00 0.00 0.00 3.06
131 132 4.832248 AGATTCACTCATTTTGCTCCGTA 58.168 39.130 0.00 0.00 0.00 4.02
132 133 3.679389 AGATTCACTCATTTTGCTCCGT 58.321 40.909 0.00 0.00 0.00 4.69
133 134 4.631377 TGTAGATTCACTCATTTTGCTCCG 59.369 41.667 0.00 0.00 0.00 4.63
134 135 5.645497 AGTGTAGATTCACTCATTTTGCTCC 59.355 40.000 0.00 0.00 44.07 4.70
135 136 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
146 147 8.894768 AGGCATATTTTAGAGTGTAGATTCAC 57.105 34.615 0.00 0.00 38.46 3.18
162 163 9.764363 CACATACGGATGTATATAGGCATATTT 57.236 33.333 14.23 0.00 44.82 1.40
163 164 8.367911 CCACATACGGATGTATATAGGCATATT 58.632 37.037 14.23 0.00 44.82 1.28
164 165 7.509318 ACCACATACGGATGTATATAGGCATAT 59.491 37.037 14.23 0.00 44.82 1.78
165 166 6.837048 ACCACATACGGATGTATATAGGCATA 59.163 38.462 14.23 0.00 44.82 3.14
166 167 5.661312 ACCACATACGGATGTATATAGGCAT 59.339 40.000 14.23 0.00 44.82 4.40
167 168 5.020795 ACCACATACGGATGTATATAGGCA 58.979 41.667 14.23 0.00 44.82 4.75
168 169 5.593679 ACCACATACGGATGTATATAGGC 57.406 43.478 14.23 0.00 44.82 3.93
169 170 7.876936 ACTACCACATACGGATGTATATAGG 57.123 40.000 14.23 12.65 44.82 2.57
173 174 9.917129 CAAATAACTACCACATACGGATGTATA 57.083 33.333 14.23 8.27 44.82 1.47
174 175 8.644216 TCAAATAACTACCACATACGGATGTAT 58.356 33.333 14.23 7.46 44.82 2.29
175 176 8.009622 TCAAATAACTACCACATACGGATGTA 57.990 34.615 14.23 0.00 44.82 2.29
177 178 7.780008 TTCAAATAACTACCACATACGGATG 57.220 36.000 5.94 5.94 39.16 3.51
178 179 8.974060 ATTTCAAATAACTACCACATACGGAT 57.026 30.769 0.00 0.00 0.00 4.18
212 213 9.927081 ACTCCATCCATTTCTAAATATTTGTCT 57.073 29.630 11.05 0.00 0.00 3.41
218 219 9.621239 TCTCCTACTCCATCCATTTCTAAATAT 57.379 33.333 0.00 0.00 0.00 1.28
219 220 9.447279 TTCTCCTACTCCATCCATTTCTAAATA 57.553 33.333 0.00 0.00 0.00 1.40
220 221 7.937700 TCTCCTACTCCATCCATTTCTAAAT 57.062 36.000 0.00 0.00 0.00 1.40
221 222 7.749377 TTCTCCTACTCCATCCATTTCTAAA 57.251 36.000 0.00 0.00 0.00 1.85
222 223 7.202130 CCATTCTCCTACTCCATCCATTTCTAA 60.202 40.741 0.00 0.00 0.00 2.10
223 224 6.270927 CCATTCTCCTACTCCATCCATTTCTA 59.729 42.308 0.00 0.00 0.00 2.10
224 225 5.072872 CCATTCTCCTACTCCATCCATTTCT 59.927 44.000 0.00 0.00 0.00 2.52
225 226 5.312079 CCATTCTCCTACTCCATCCATTTC 58.688 45.833 0.00 0.00 0.00 2.17
226 227 4.446889 GCCATTCTCCTACTCCATCCATTT 60.447 45.833 0.00 0.00 0.00 2.32
227 228 3.073650 GCCATTCTCCTACTCCATCCATT 59.926 47.826 0.00 0.00 0.00 3.16
228 229 2.641815 GCCATTCTCCTACTCCATCCAT 59.358 50.000 0.00 0.00 0.00 3.41
229 230 2.050144 GCCATTCTCCTACTCCATCCA 58.950 52.381 0.00 0.00 0.00 3.41
230 231 1.001406 CGCCATTCTCCTACTCCATCC 59.999 57.143 0.00 0.00 0.00 3.51
231 232 1.689273 ACGCCATTCTCCTACTCCATC 59.311 52.381 0.00 0.00 0.00 3.51
232 233 1.794714 ACGCCATTCTCCTACTCCAT 58.205 50.000 0.00 0.00 0.00 3.41
233 234 1.568504 AACGCCATTCTCCTACTCCA 58.431 50.000 0.00 0.00 0.00 3.86
234 235 2.678336 CAAAACGCCATTCTCCTACTCC 59.322 50.000 0.00 0.00 0.00 3.85
235 236 2.678336 CCAAAACGCCATTCTCCTACTC 59.322 50.000 0.00 0.00 0.00 2.59
236 237 2.304761 TCCAAAACGCCATTCTCCTACT 59.695 45.455 0.00 0.00 0.00 2.57
237 238 2.678336 CTCCAAAACGCCATTCTCCTAC 59.322 50.000 0.00 0.00 0.00 3.18
238 239 2.355716 CCTCCAAAACGCCATTCTCCTA 60.356 50.000 0.00 0.00 0.00 2.94
239 240 1.614317 CCTCCAAAACGCCATTCTCCT 60.614 52.381 0.00 0.00 0.00 3.69
240 241 0.811281 CCTCCAAAACGCCATTCTCC 59.189 55.000 0.00 0.00 0.00 3.71
241 242 1.468914 GTCCTCCAAAACGCCATTCTC 59.531 52.381 0.00 0.00 0.00 2.87
242 243 1.534729 GTCCTCCAAAACGCCATTCT 58.465 50.000 0.00 0.00 0.00 2.40
243 244 0.168128 CGTCCTCCAAAACGCCATTC 59.832 55.000 0.00 0.00 31.48 2.67
244 245 0.250553 TCGTCCTCCAAAACGCCATT 60.251 50.000 0.00 0.00 38.72 3.16
245 246 0.673644 CTCGTCCTCCAAAACGCCAT 60.674 55.000 0.00 0.00 38.72 4.40
246 247 1.301401 CTCGTCCTCCAAAACGCCA 60.301 57.895 0.00 0.00 38.72 5.69
247 248 2.677979 GCTCGTCCTCCAAAACGCC 61.678 63.158 0.00 0.00 38.72 5.68
248 249 1.627550 GAGCTCGTCCTCCAAAACGC 61.628 60.000 0.00 0.00 38.72 4.84
249 250 2.446341 GAGCTCGTCCTCCAAAACG 58.554 57.895 0.00 0.00 40.17 3.60
259 260 2.107953 GCCTCCATGGAGCTCGTC 59.892 66.667 32.97 15.98 40.69 4.20
260 261 3.474570 GGCCTCCATGGAGCTCGT 61.475 66.667 32.97 0.00 40.69 4.18
261 262 2.262774 AAAGGCCTCCATGGAGCTCG 62.263 60.000 32.97 21.57 40.69 5.03
262 263 0.839946 TAAAGGCCTCCATGGAGCTC 59.160 55.000 32.97 25.21 40.69 4.09
263 264 1.527457 ATAAAGGCCTCCATGGAGCT 58.473 50.000 32.97 23.24 40.69 4.09
264 265 2.371658 AATAAAGGCCTCCATGGAGC 57.628 50.000 32.97 26.44 40.69 4.70
265 266 4.711355 TCAAAAATAAAGGCCTCCATGGAG 59.289 41.667 31.69 31.69 41.63 3.86
266 267 4.682563 TCAAAAATAAAGGCCTCCATGGA 58.317 39.130 15.27 15.27 38.35 3.41
267 268 5.419239 TTCAAAAATAAAGGCCTCCATGG 57.581 39.130 5.23 4.97 39.35 3.66
268 269 7.926674 ATTTTCAAAAATAAAGGCCTCCATG 57.073 32.000 5.23 0.00 36.88 3.66
269 270 8.938801 AAATTTTCAAAAATAAAGGCCTCCAT 57.061 26.923 5.23 0.00 37.62 3.41
270 271 7.995488 TGAAATTTTCAAAAATAAAGGCCTCCA 59.005 29.630 5.23 0.00 37.62 3.86
271 272 8.389779 TGAAATTTTCAAAAATAAAGGCCTCC 57.610 30.769 5.23 0.00 37.62 4.30
329 330 8.220755 ACATCCTTACATACACGCATATTTTT 57.779 30.769 0.00 0.00 0.00 1.94
330 331 7.801716 ACATCCTTACATACACGCATATTTT 57.198 32.000 0.00 0.00 0.00 1.82
331 332 8.770828 GTTACATCCTTACATACACGCATATTT 58.229 33.333 0.00 0.00 0.00 1.40
332 333 7.386848 GGTTACATCCTTACATACACGCATATT 59.613 37.037 0.00 0.00 0.00 1.28
333 334 6.872020 GGTTACATCCTTACATACACGCATAT 59.128 38.462 0.00 0.00 0.00 1.78
334 335 6.041182 AGGTTACATCCTTACATACACGCATA 59.959 38.462 0.00 0.00 33.52 3.14
335 336 5.054477 GGTTACATCCTTACATACACGCAT 58.946 41.667 0.00 0.00 0.00 4.73
336 337 4.160814 AGGTTACATCCTTACATACACGCA 59.839 41.667 0.00 0.00 33.52 5.24
337 338 4.690122 AGGTTACATCCTTACATACACGC 58.310 43.478 0.00 0.00 33.52 5.34
338 339 6.798482 TGTAGGTTACATCCTTACATACACG 58.202 40.000 0.00 0.00 35.08 4.49
339 340 8.202137 ACATGTAGGTTACATCCTTACATACAC 58.798 37.037 0.00 0.00 45.83 2.90
340 341 8.201464 CACATGTAGGTTACATCCTTACATACA 58.799 37.037 0.00 0.00 45.83 2.29
341 342 8.202137 ACACATGTAGGTTACATCCTTACATAC 58.798 37.037 0.00 0.00 45.83 2.39
342 343 8.201464 CACACATGTAGGTTACATCCTTACATA 58.799 37.037 0.00 0.00 45.83 2.29
343 344 7.047891 CACACATGTAGGTTACATCCTTACAT 58.952 38.462 0.00 0.00 45.83 2.29
344 345 6.211785 TCACACATGTAGGTTACATCCTTACA 59.788 38.462 0.00 0.00 45.83 2.41
345 346 6.636705 TCACACATGTAGGTTACATCCTTAC 58.363 40.000 0.00 0.00 45.83 2.34
346 347 6.860790 TCACACATGTAGGTTACATCCTTA 57.139 37.500 0.00 0.00 45.83 2.69
347 348 5.755409 TCACACATGTAGGTTACATCCTT 57.245 39.130 0.00 0.00 45.83 3.36
348 349 5.755409 TTCACACATGTAGGTTACATCCT 57.245 39.130 0.00 0.00 45.83 3.24
349 350 7.391148 AATTTCACACATGTAGGTTACATCC 57.609 36.000 0.00 0.00 45.83 3.51
350 351 8.511321 TGAAATTTCACACATGTAGGTTACATC 58.489 33.333 16.91 0.00 38.60 3.06
351 352 8.402798 TGAAATTTCACACATGTAGGTTACAT 57.597 30.769 16.91 0.00 40.02 2.29
352 353 7.809546 TGAAATTTCACACATGTAGGTTACA 57.190 32.000 16.91 0.00 36.22 2.41
353 354 8.511321 TCATGAAATTTCACACATGTAGGTTAC 58.489 33.333 22.71 0.00 40.49 2.50
354 355 8.628630 TCATGAAATTTCACACATGTAGGTTA 57.371 30.769 22.71 0.00 40.49 2.85
355 356 7.523293 TCATGAAATTTCACACATGTAGGTT 57.477 32.000 22.71 0.00 40.49 3.50
356 357 7.394077 TCATCATGAAATTTCACACATGTAGGT 59.606 33.333 22.71 0.44 40.49 3.08
357 358 7.764331 TCATCATGAAATTTCACACATGTAGG 58.236 34.615 22.71 10.77 40.49 3.18
358 359 9.628746 TTTCATCATGAAATTTCACACATGTAG 57.371 29.630 22.71 13.05 41.02 2.74
373 374 6.468637 CGCATTTCAACGTATTTCATCATGAA 59.531 34.615 0.00 0.00 34.03 2.57
374 375 5.964751 CGCATTTCAACGTATTTCATCATGA 59.035 36.000 0.00 0.00 0.00 3.07
375 376 5.964751 TCGCATTTCAACGTATTTCATCATG 59.035 36.000 0.00 0.00 0.00 3.07
376 377 5.965334 GTCGCATTTCAACGTATTTCATCAT 59.035 36.000 0.00 0.00 0.00 2.45
377 378 5.320723 GTCGCATTTCAACGTATTTCATCA 58.679 37.500 0.00 0.00 0.00 3.07
378 379 4.728608 GGTCGCATTTCAACGTATTTCATC 59.271 41.667 0.00 0.00 0.00 2.92
379 380 4.394920 AGGTCGCATTTCAACGTATTTCAT 59.605 37.500 0.00 0.00 0.00 2.57
380 381 3.749088 AGGTCGCATTTCAACGTATTTCA 59.251 39.130 0.00 0.00 0.00 2.69
381 382 4.088648 CAGGTCGCATTTCAACGTATTTC 58.911 43.478 0.00 0.00 0.00 2.17
382 383 3.500680 ACAGGTCGCATTTCAACGTATTT 59.499 39.130 0.00 0.00 0.00 1.40
383 384 3.071479 ACAGGTCGCATTTCAACGTATT 58.929 40.909 0.00 0.00 0.00 1.89
384 385 2.415168 CACAGGTCGCATTTCAACGTAT 59.585 45.455 0.00 0.00 0.00 3.06
385 386 1.795872 CACAGGTCGCATTTCAACGTA 59.204 47.619 0.00 0.00 0.00 3.57
386 387 0.586319 CACAGGTCGCATTTCAACGT 59.414 50.000 0.00 0.00 0.00 3.99
387 388 0.725784 GCACAGGTCGCATTTCAACG 60.726 55.000 0.00 0.00 0.00 4.10
388 389 0.310543 TGCACAGGTCGCATTTCAAC 59.689 50.000 0.00 0.00 33.55 3.18
389 390 1.028130 TTGCACAGGTCGCATTTCAA 58.972 45.000 0.00 0.00 39.58 2.69
390 391 1.028130 TTTGCACAGGTCGCATTTCA 58.972 45.000 0.00 0.00 39.58 2.69
391 392 2.132740 TTTTGCACAGGTCGCATTTC 57.867 45.000 0.00 0.00 39.58 2.17
392 393 2.593346 TTTTTGCACAGGTCGCATTT 57.407 40.000 0.00 0.00 39.58 2.32
408 409 5.544650 CTCAGGCCATGAATTTGTCTTTTT 58.455 37.500 5.01 0.00 37.52 1.94
409 410 4.562143 GCTCAGGCCATGAATTTGTCTTTT 60.562 41.667 5.01 0.00 37.52 2.27
410 411 3.056322 GCTCAGGCCATGAATTTGTCTTT 60.056 43.478 5.01 0.00 37.52 2.52
411 412 2.494870 GCTCAGGCCATGAATTTGTCTT 59.505 45.455 5.01 0.00 37.52 3.01
412 413 2.097825 GCTCAGGCCATGAATTTGTCT 58.902 47.619 5.01 0.00 37.52 3.41
413 414 1.202222 CGCTCAGGCCATGAATTTGTC 60.202 52.381 5.01 0.00 37.52 3.18
414 415 0.813184 CGCTCAGGCCATGAATTTGT 59.187 50.000 5.01 0.00 37.52 2.83
415 416 1.097232 TCGCTCAGGCCATGAATTTG 58.903 50.000 5.01 0.00 37.52 2.32
416 417 1.679680 CATCGCTCAGGCCATGAATTT 59.320 47.619 5.01 0.00 38.95 1.82
417 418 1.134007 TCATCGCTCAGGCCATGAATT 60.134 47.619 5.01 0.00 41.64 2.17
418 419 0.471191 TCATCGCTCAGGCCATGAAT 59.529 50.000 5.01 0.00 41.64 2.57
419 420 1.906995 TCATCGCTCAGGCCATGAA 59.093 52.632 5.01 0.00 41.64 2.57
420 421 0.471191 ATTCATCGCTCAGGCCATGA 59.529 50.000 5.01 5.02 42.56 3.07
421 422 2.074576 CTATTCATCGCTCAGGCCATG 58.925 52.381 5.01 0.00 38.19 3.66
422 423 1.696336 ACTATTCATCGCTCAGGCCAT 59.304 47.619 5.01 0.00 34.44 4.40
423 424 1.123077 ACTATTCATCGCTCAGGCCA 58.877 50.000 5.01 0.00 34.44 5.36
424 425 3.056536 TGATACTATTCATCGCTCAGGCC 60.057 47.826 0.00 0.00 34.44 5.19
425 426 4.179926 TGATACTATTCATCGCTCAGGC 57.820 45.455 0.00 0.00 0.00 4.85
426 427 5.575995 CACATGATACTATTCATCGCTCAGG 59.424 44.000 0.00 0.00 34.09 3.86
427 428 6.155136 ACACATGATACTATTCATCGCTCAG 58.845 40.000 0.00 0.00 34.09 3.35
428 429 6.089249 ACACATGATACTATTCATCGCTCA 57.911 37.500 0.00 0.00 34.09 4.26
429 430 8.520835 TTAACACATGATACTATTCATCGCTC 57.479 34.615 0.00 0.00 34.09 5.03
430 431 8.765219 GTTTAACACATGATACTATTCATCGCT 58.235 33.333 0.00 0.00 34.09 4.93
431 432 8.547894 TGTTTAACACATGATACTATTCATCGC 58.452 33.333 0.00 0.00 34.09 4.58
433 434 9.869844 GCTGTTTAACACATGATACTATTCATC 57.130 33.333 0.00 0.00 34.09 2.92
434 435 9.618890 AGCTGTTTAACACATGATACTATTCAT 57.381 29.630 0.00 0.00 36.79 2.57
435 436 9.098355 GAGCTGTTTAACACATGATACTATTCA 57.902 33.333 0.00 0.00 33.76 2.57
436 437 8.552034 GGAGCTGTTTAACACATGATACTATTC 58.448 37.037 0.00 0.00 33.76 1.75
437 438 8.046708 TGGAGCTGTTTAACACATGATACTATT 58.953 33.333 0.00 0.00 33.76 1.73
438 439 7.564793 TGGAGCTGTTTAACACATGATACTAT 58.435 34.615 0.00 0.00 33.76 2.12
439 440 6.941857 TGGAGCTGTTTAACACATGATACTA 58.058 36.000 0.00 0.00 33.76 1.82
440 441 5.804639 TGGAGCTGTTTAACACATGATACT 58.195 37.500 0.00 0.00 33.76 2.12
441 442 6.494893 TTGGAGCTGTTTAACACATGATAC 57.505 37.500 0.00 0.00 33.76 2.24
442 443 7.701539 ATTTGGAGCTGTTTAACACATGATA 57.298 32.000 0.00 0.00 33.76 2.15
443 444 6.594788 ATTTGGAGCTGTTTAACACATGAT 57.405 33.333 0.00 0.00 33.76 2.45
444 445 6.403866 AATTTGGAGCTGTTTAACACATGA 57.596 33.333 0.00 0.00 33.76 3.07
445 446 8.761575 ATAAATTTGGAGCTGTTTAACACATG 57.238 30.769 0.00 0.00 33.76 3.21
446 447 8.806146 AGATAAATTTGGAGCTGTTTAACACAT 58.194 29.630 0.00 0.00 33.76 3.21
447 448 8.177119 AGATAAATTTGGAGCTGTTTAACACA 57.823 30.769 0.00 0.00 0.00 3.72
448 449 9.476202 AAAGATAAATTTGGAGCTGTTTAACAC 57.524 29.630 0.00 0.00 0.00 3.32
473 474 0.820871 AAACGAGGGCTGTGCAAAAA 59.179 45.000 0.00 0.00 0.00 1.94
474 475 0.383949 GAAACGAGGGCTGTGCAAAA 59.616 50.000 0.00 0.00 0.00 2.44
475 476 0.749818 TGAAACGAGGGCTGTGCAAA 60.750 50.000 0.00 0.00 0.00 3.68
476 477 0.749818 TTGAAACGAGGGCTGTGCAA 60.750 50.000 0.00 0.00 0.00 4.08
477 478 0.537143 ATTGAAACGAGGGCTGTGCA 60.537 50.000 0.00 0.00 0.00 4.57
478 479 0.109597 CATTGAAACGAGGGCTGTGC 60.110 55.000 0.00 0.00 0.00 4.57
479 480 0.523072 CCATTGAAACGAGGGCTGTG 59.477 55.000 0.00 0.00 0.00 3.66
480 481 0.609131 CCCATTGAAACGAGGGCTGT 60.609 55.000 0.00 0.00 33.91 4.40
481 482 0.609131 ACCCATTGAAACGAGGGCTG 60.609 55.000 0.00 0.00 45.45 4.85
482 483 0.112412 AACCCATTGAAACGAGGGCT 59.888 50.000 0.00 0.00 45.45 5.19
483 484 0.966179 AAACCCATTGAAACGAGGGC 59.034 50.000 0.00 0.00 45.45 5.19
484 485 2.866065 GCAAAACCCATTGAAACGAGGG 60.866 50.000 0.00 0.00 46.96 4.30
485 486 2.403259 GCAAAACCCATTGAAACGAGG 58.597 47.619 0.00 0.00 31.84 4.63
486 487 2.403259 GGCAAAACCCATTGAAACGAG 58.597 47.619 0.00 0.00 31.84 4.18
487 488 2.517650 GGCAAAACCCATTGAAACGA 57.482 45.000 0.00 0.00 31.84 3.85
498 499 4.509970 GTGTGTAAATTTCAGGGCAAAACC 59.490 41.667 0.00 0.00 37.93 3.27
499 500 5.112686 TGTGTGTAAATTTCAGGGCAAAAC 58.887 37.500 0.00 0.00 0.00 2.43
500 501 5.344743 TGTGTGTAAATTTCAGGGCAAAA 57.655 34.783 0.00 0.00 0.00 2.44
501 502 5.163364 ACATGTGTGTAAATTTCAGGGCAAA 60.163 36.000 0.00 0.00 36.63 3.68
502 503 4.343526 ACATGTGTGTAAATTTCAGGGCAA 59.656 37.500 0.00 0.00 36.63 4.52
503 504 3.894427 ACATGTGTGTAAATTTCAGGGCA 59.106 39.130 0.00 0.00 36.63 5.36
504 505 4.236935 CACATGTGTGTAAATTTCAGGGC 58.763 43.478 18.03 0.00 40.96 5.19
517 518 6.126914 CATGAAGGCATAACACACATGTGTG 61.127 44.000 43.01 43.01 44.88 3.82
518 519 4.082625 CATGAAGGCATAACACACATGTGT 60.083 41.667 25.76 25.76 46.35 3.72
519 520 4.417506 CATGAAGGCATAACACACATGTG 58.582 43.478 24.25 24.25 41.42 3.21
520 521 3.119388 GCATGAAGGCATAACACACATGT 60.119 43.478 0.00 0.00 34.41 3.21
521 522 3.119424 TGCATGAAGGCATAACACACATG 60.119 43.478 0.00 0.00 39.25 3.21
522 523 3.090790 TGCATGAAGGCATAACACACAT 58.909 40.909 0.00 0.00 39.25 3.21
523 524 2.228582 GTGCATGAAGGCATAACACACA 59.771 45.455 0.00 0.00 46.92 3.72
524 525 2.228582 TGTGCATGAAGGCATAACACAC 59.771 45.455 0.00 0.00 46.92 3.82
525 526 2.512705 TGTGCATGAAGGCATAACACA 58.487 42.857 0.00 0.00 46.92 3.72
526 527 3.379372 AGATGTGCATGAAGGCATAACAC 59.621 43.478 0.00 0.00 46.92 3.32
527 528 3.379057 CAGATGTGCATGAAGGCATAACA 59.621 43.478 0.00 0.00 46.92 2.41
528 529 3.379372 ACAGATGTGCATGAAGGCATAAC 59.621 43.478 0.00 0.00 46.92 1.89
529 530 3.623703 ACAGATGTGCATGAAGGCATAA 58.376 40.909 0.00 0.00 46.92 1.90
530 531 3.286329 ACAGATGTGCATGAAGGCATA 57.714 42.857 0.00 0.00 46.92 3.14
531 532 2.139323 ACAGATGTGCATGAAGGCAT 57.861 45.000 0.00 0.00 46.92 4.40
532 533 2.026915 AGTACAGATGTGCATGAAGGCA 60.027 45.455 0.00 0.00 42.53 4.75
533 534 2.636830 AGTACAGATGTGCATGAAGGC 58.363 47.619 0.00 0.00 32.87 4.35
534 535 5.633830 AAAAGTACAGATGTGCATGAAGG 57.366 39.130 0.00 0.00 32.87 3.46
594 595 9.643693 GCCTCTAGATTCAAAATTCAAATTTCA 57.356 29.630 0.00 0.00 37.62 2.69
595 596 9.091784 GGCCTCTAGATTCAAAATTCAAATTTC 57.908 33.333 0.00 0.00 37.62 2.17
596 597 8.819845 AGGCCTCTAGATTCAAAATTCAAATTT 58.180 29.630 0.00 0.00 40.15 1.82
597 598 8.371571 AGGCCTCTAGATTCAAAATTCAAATT 57.628 30.769 0.00 0.00 0.00 1.82
598 599 7.069208 GGAGGCCTCTAGATTCAAAATTCAAAT 59.931 37.037 31.36 0.00 0.00 2.32
599 600 6.378280 GGAGGCCTCTAGATTCAAAATTCAAA 59.622 38.462 31.36 0.00 0.00 2.69
600 601 5.888161 GGAGGCCTCTAGATTCAAAATTCAA 59.112 40.000 31.36 0.00 0.00 2.69
601 602 5.044919 TGGAGGCCTCTAGATTCAAAATTCA 60.045 40.000 31.36 13.08 0.00 2.57
602 603 5.440610 TGGAGGCCTCTAGATTCAAAATTC 58.559 41.667 31.36 10.55 0.00 2.17
603 604 5.044550 ACTGGAGGCCTCTAGATTCAAAATT 60.045 40.000 42.83 20.91 40.16 1.82
604 605 4.476479 ACTGGAGGCCTCTAGATTCAAAAT 59.524 41.667 42.83 21.57 40.16 1.82
605 606 3.846588 ACTGGAGGCCTCTAGATTCAAAA 59.153 43.478 42.83 12.77 40.16 2.44
606 607 3.198635 CACTGGAGGCCTCTAGATTCAAA 59.801 47.826 42.83 14.11 40.16 2.69
607 608 2.768527 CACTGGAGGCCTCTAGATTCAA 59.231 50.000 42.83 15.03 40.16 2.69
608 609 2.023984 TCACTGGAGGCCTCTAGATTCA 60.024 50.000 42.83 25.58 40.16 2.57
609 610 2.627699 CTCACTGGAGGCCTCTAGATTC 59.372 54.545 42.83 22.61 40.16 2.52
610 611 2.676748 CTCACTGGAGGCCTCTAGATT 58.323 52.381 42.83 24.98 40.16 2.40
611 612 1.757405 GCTCACTGGAGGCCTCTAGAT 60.757 57.143 42.83 27.58 40.16 1.98
612 613 0.396417 GCTCACTGGAGGCCTCTAGA 60.396 60.000 42.83 25.89 40.16 2.43
613 614 0.396974 AGCTCACTGGAGGCCTCTAG 60.397 60.000 36.95 36.95 42.92 2.43
614 615 0.396417 GAGCTCACTGGAGGCCTCTA 60.396 60.000 31.36 25.40 41.67 2.43
615 616 1.685421 GAGCTCACTGGAGGCCTCT 60.685 63.158 31.36 10.19 41.67 3.69
616 617 2.899505 GAGCTCACTGGAGGCCTC 59.100 66.667 25.59 25.59 41.67 4.70
617 618 3.073735 CGAGCTCACTGGAGGCCT 61.074 66.667 15.40 3.86 41.67 5.19
618 619 4.154347 CCGAGCTCACTGGAGGCC 62.154 72.222 15.40 0.00 41.67 5.19
619 620 3.363844 GACCGAGCTCACTGGAGGC 62.364 68.421 15.40 0.00 41.67 4.70
620 621 1.979155 TGACCGAGCTCACTGGAGG 60.979 63.158 15.40 8.04 41.67 4.30
621 622 1.214062 GTGACCGAGCTCACTGGAG 59.786 63.158 15.40 0.00 44.33 3.86
622 623 2.276116 GGTGACCGAGCTCACTGGA 61.276 63.158 15.40 0.00 40.50 3.86
623 624 2.099652 TTGGTGACCGAGCTCACTGG 62.100 60.000 15.40 9.60 40.50 4.00
624 625 0.249868 TTTGGTGACCGAGCTCACTG 60.250 55.000 15.40 3.86 40.50 3.66
625 626 0.034059 CTTTGGTGACCGAGCTCACT 59.966 55.000 15.40 0.00 40.50 3.41
626 627 0.951040 CCTTTGGTGACCGAGCTCAC 60.951 60.000 15.40 4.81 40.02 3.51
627 628 1.371183 CCTTTGGTGACCGAGCTCA 59.629 57.895 15.40 0.00 0.00 4.26
628 629 2.035442 GCCTTTGGTGACCGAGCTC 61.035 63.158 2.73 2.73 0.00 4.09
629 630 2.032681 GCCTTTGGTGACCGAGCT 59.967 61.111 0.00 0.00 0.00 4.09
630 631 1.244019 ATTGCCTTTGGTGACCGAGC 61.244 55.000 0.00 0.00 0.00 5.03
631 632 1.247567 AATTGCCTTTGGTGACCGAG 58.752 50.000 0.00 0.00 0.00 4.63
632 633 1.611491 GAAATTGCCTTTGGTGACCGA 59.389 47.619 0.00 0.00 0.00 4.69
633 634 1.613437 AGAAATTGCCTTTGGTGACCG 59.387 47.619 0.00 0.00 0.00 4.79
634 635 2.627699 TCAGAAATTGCCTTTGGTGACC 59.372 45.455 0.00 0.00 0.00 4.02
635 636 3.305608 CCTCAGAAATTGCCTTTGGTGAC 60.306 47.826 0.00 0.00 0.00 3.67
636 637 2.892852 CCTCAGAAATTGCCTTTGGTGA 59.107 45.455 0.00 0.00 0.00 4.02
637 638 2.028748 CCCTCAGAAATTGCCTTTGGTG 60.029 50.000 0.00 0.00 0.00 4.17
638 639 2.158325 TCCCTCAGAAATTGCCTTTGGT 60.158 45.455 0.00 0.00 0.00 3.67
639 640 2.494870 CTCCCTCAGAAATTGCCTTTGG 59.505 50.000 0.00 0.00 0.00 3.28
640 641 3.160269 ACTCCCTCAGAAATTGCCTTTG 58.840 45.455 0.00 0.00 0.00 2.77
641 642 3.532641 ACTCCCTCAGAAATTGCCTTT 57.467 42.857 0.00 0.00 0.00 3.11
642 643 3.589288 ACTACTCCCTCAGAAATTGCCTT 59.411 43.478 0.00 0.00 0.00 4.35
643 644 3.185455 ACTACTCCCTCAGAAATTGCCT 58.815 45.455 0.00 0.00 0.00 4.75
644 645 3.636153 ACTACTCCCTCAGAAATTGCC 57.364 47.619 0.00 0.00 0.00 4.52
674 675 8.906867 CCTAATATCAAGTCAACAACATCCAAT 58.093 33.333 0.00 0.00 0.00 3.16
675 676 7.888021 ACCTAATATCAAGTCAACAACATCCAA 59.112 33.333 0.00 0.00 0.00 3.53
676 677 7.402054 ACCTAATATCAAGTCAACAACATCCA 58.598 34.615 0.00 0.00 0.00 3.41
677 678 7.865706 ACCTAATATCAAGTCAACAACATCC 57.134 36.000 0.00 0.00 0.00 3.51
707 708 9.553064 CATGTTTAGCACTCTCTCCTAATTAAT 57.447 33.333 0.00 0.00 0.00 1.40
708 709 8.540388 ACATGTTTAGCACTCTCTCCTAATTAA 58.460 33.333 0.00 0.00 0.00 1.40
709 710 8.079211 ACATGTTTAGCACTCTCTCCTAATTA 57.921 34.615 0.00 0.00 0.00 1.40
710 711 6.951971 ACATGTTTAGCACTCTCTCCTAATT 58.048 36.000 0.00 0.00 0.00 1.40
711 712 6.552445 ACATGTTTAGCACTCTCTCCTAAT 57.448 37.500 0.00 0.00 0.00 1.73
712 713 6.360370 AACATGTTTAGCACTCTCTCCTAA 57.640 37.500 4.92 0.00 0.00 2.69
713 714 6.014584 TCAAACATGTTTAGCACTCTCTCCTA 60.015 38.462 22.87 0.00 0.00 2.94
714 715 4.899352 AACATGTTTAGCACTCTCTCCT 57.101 40.909 4.92 0.00 0.00 3.69
715 716 4.997395 TCAAACATGTTTAGCACTCTCTCC 59.003 41.667 22.87 0.00 0.00 3.71
716 717 5.388890 CGTCAAACATGTTTAGCACTCTCTC 60.389 44.000 22.87 4.54 0.00 3.20
717 718 4.449068 CGTCAAACATGTTTAGCACTCTCT 59.551 41.667 22.87 0.00 0.00 3.10
718 719 4.211374 ACGTCAAACATGTTTAGCACTCTC 59.789 41.667 22.87 7.16 0.00 3.20
719 720 4.127171 ACGTCAAACATGTTTAGCACTCT 58.873 39.130 22.87 6.13 0.00 3.24
720 721 4.468095 ACGTCAAACATGTTTAGCACTC 57.532 40.909 22.87 9.23 0.00 3.51
721 722 4.893424 AACGTCAAACATGTTTAGCACT 57.107 36.364 22.87 6.10 28.96 4.40
722 723 6.343616 CGTTTAACGTCAAACATGTTTAGCAC 60.344 38.462 22.87 17.31 38.12 4.40
723 724 5.677612 CGTTTAACGTCAAACATGTTTAGCA 59.322 36.000 22.87 7.96 38.12 3.49
724 725 5.385615 GCGTTTAACGTCAAACATGTTTAGC 60.386 40.000 22.87 16.50 44.73 3.09
725 726 5.114423 GGCGTTTAACGTCAAACATGTTTAG 59.886 40.000 22.87 18.20 46.84 1.85
726 727 4.968788 GGCGTTTAACGTCAAACATGTTTA 59.031 37.500 22.87 9.48 46.84 2.01
727 728 3.792421 GGCGTTTAACGTCAAACATGTTT 59.208 39.130 18.13 18.13 46.84 2.83
728 729 3.364946 GGCGTTTAACGTCAAACATGTT 58.635 40.909 17.44 4.92 46.84 2.71
750 751 5.787494 TCTATCCAATAGCCTATCTTGCCTT 59.213 40.000 0.00 0.00 32.85 4.35
764 765 3.450578 GTTCAACCGCGTCTATCCAATA 58.549 45.455 4.92 0.00 0.00 1.90
796 797 4.872664 AGACGACTTCGAGAAATTCAACT 58.127 39.130 5.47 0.00 43.02 3.16
886 894 8.593945 TCCCTTTGCATGTAAAGATAGAAAAT 57.406 30.769 30.65 0.00 39.46 1.82
909 917 3.092334 AGCCAATTTGACACGTTTTCC 57.908 42.857 0.00 0.00 0.00 3.13
916 924 3.435105 TGACACAAGCCAATTTGACAC 57.565 42.857 0.00 0.00 0.00 3.67
1038 1046 9.689976 GTGTAGCTGGCAATGAGATATATATAG 57.310 37.037 0.00 0.00 0.00 1.31
1151 1159 3.505680 ACAAGATAGCCGATGCACAAAAA 59.494 39.130 0.00 0.00 41.13 1.94
1206 1214 3.869246 ACCTAATGGAGAAAATACACGCG 59.131 43.478 3.53 3.53 37.04 6.01
1234 1242 8.409371 TGTTTGTCAGTGCAGAATACATAAAAA 58.591 29.630 0.00 0.00 0.00 1.94
1243 1251 4.613944 CAATGTGTTTGTCAGTGCAGAAT 58.386 39.130 0.00 0.00 0.00 2.40
1245 1253 3.696281 CAATGTGTTTGTCAGTGCAGA 57.304 42.857 0.00 0.00 0.00 4.26
1272 1280 0.758734 CCATCCATGAGGCGACCTAA 59.241 55.000 0.00 0.00 31.76 2.69
1277 1285 0.690744 TCCTTCCATCCATGAGGCGA 60.691 55.000 0.00 0.00 33.74 5.54
1302 1310 1.078759 GAGTTGGCATGACGGTCTCG 61.079 60.000 9.88 1.50 43.02 4.04
1309 1317 1.242076 AGCACTTGAGTTGGCATGAC 58.758 50.000 0.00 0.00 0.00 3.06
1374 1385 3.824414 ATCCCGTTCGACACAAAATTC 57.176 42.857 0.00 0.00 0.00 2.17
1493 1504 4.049640 TTGCACGCCGGGCAATTC 62.050 61.111 24.77 5.25 45.57 2.17
1527 1538 0.179189 GCACATTGTAGCGCCAGTTC 60.179 55.000 2.29 0.00 0.00 3.01
1543 1554 5.869753 TTCTTCTTCTTTAGAGCATGCAC 57.130 39.130 21.98 14.59 33.51 4.57
1576 1587 6.405842 CCTGCCTTTATGGTCTGGTTTATTTC 60.406 42.308 0.00 0.00 38.35 2.17
1583 1594 0.034089 GCCTGCCTTTATGGTCTGGT 60.034 55.000 0.00 0.00 38.35 4.00
1585 1596 2.062971 ATGCCTGCCTTTATGGTCTG 57.937 50.000 0.00 0.00 38.35 3.51
1604 1615 1.748493 GAATATTGAAGGGCACGCCAA 59.252 47.619 10.83 0.00 37.98 4.52
1607 1618 1.295792 TCGAATATTGAAGGGCACGC 58.704 50.000 0.00 0.00 0.00 5.34
1610 1621 5.473162 CCATTACATCGAATATTGAAGGGCA 59.527 40.000 0.00 0.00 0.00 5.36
1615 1626 8.210946 AGTTCTCCCATTACATCGAATATTGAA 58.789 33.333 0.00 0.00 0.00 2.69
1650 1661 8.814235 CCGTGACGAATAAACTTATGTATCTTT 58.186 33.333 6.54 0.00 0.00 2.52
1738 1751 0.178990 AAAGGCACCGCTCTTCCTTT 60.179 50.000 0.00 0.00 42.32 3.11
1746 1759 2.498056 CCCAAACAAAGGCACCGCT 61.498 57.895 0.00 0.00 0.00 5.52
1747 1760 2.028925 CCCAAACAAAGGCACCGC 59.971 61.111 0.00 0.00 0.00 5.68
1762 1812 7.751768 ATTTAAGAATCAATAGCTACAGCCC 57.248 36.000 0.00 0.00 43.38 5.19
1798 1849 7.770201 TGTGTTTGTTTGAGATTCTGATTTCA 58.230 30.769 0.00 0.00 0.00 2.69
1816 1867 5.181009 TCTAGCAGGAATCTGATGTGTTTG 58.819 41.667 0.00 0.00 43.49 2.93
1832 1883 6.922407 TCAATCTTCAGAATCGATTCTAGCAG 59.078 38.462 34.03 27.51 44.84 4.24
1862 1913 3.507162 TTCTCCAACTCAATTGCCTGA 57.493 42.857 0.00 0.00 36.93 3.86
1918 1974 4.590222 CCCGGTGTATATAAACCTGTACCT 59.410 45.833 18.25 0.00 34.06 3.08
1919 1975 4.262592 CCCCGGTGTATATAAACCTGTACC 60.263 50.000 18.25 0.00 34.06 3.34
1982 2038 2.035449 CCTTGATGCATGCCCATGTAAG 59.965 50.000 16.68 10.57 40.80 2.34
2120 2182 1.227089 CATCGAGCTCCCAGTTCGG 60.227 63.158 8.47 0.00 46.68 4.30
2220 2282 1.355971 CTGTAATCCGGTCCAACACG 58.644 55.000 0.00 0.00 0.00 4.49
2241 2305 2.067365 TATCAGCGCCTCTTACCTCA 57.933 50.000 2.29 0.00 0.00 3.86
2275 2339 1.827789 ACCACAGCGTGCCACAATT 60.828 52.632 0.00 0.00 31.34 2.32
2516 2580 3.262915 CAGTTCTTCAAGTCCTCCTCCAT 59.737 47.826 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.