Multiple sequence alignment - TraesCS6D01G329800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G329800 chr6D 100.000 2757 0 0 1 2757 433591521 433588765 0.000000e+00 5092.0
1 TraesCS6D01G329800 chr6D 94.017 117 6 1 775 890 433585155 433585271 2.820000e-40 176.0
2 TraesCS6D01G329800 chr7D 95.477 2034 38 5 778 2757 370967559 370969592 0.000000e+00 3197.0
3 TraesCS6D01G329800 chr7D 96.333 1309 32 5 778 2073 209080592 209081897 0.000000e+00 2137.0
4 TraesCS6D01G329800 chr7D 94.438 863 24 4 1919 2757 209081716 209082578 0.000000e+00 1306.0
5 TraesCS6D01G329800 chr7D 83.828 606 78 12 1053 1643 135503137 135503737 2.400000e-155 558.0
6 TraesCS6D01G329800 chr7D 95.238 147 7 0 1948 2094 209081716 209081862 1.650000e-57 233.0
7 TraesCS6D01G329800 chr7D 96.491 114 3 1 778 890 209094829 209094716 1.300000e-43 187.0
8 TraesCS6D01G329800 chr7D 96.491 114 3 1 778 890 370973278 370973165 1.300000e-43 187.0
9 TraesCS6D01G329800 chr7D 93.103 87 6 0 1890 1976 370968817 370968903 8.010000e-26 128.0
10 TraesCS6D01G329800 chr7D 95.000 60 3 0 1890 1949 209081832 209081891 8.130000e-16 95.3
11 TraesCS6D01G329800 chr7B 89.238 2007 141 31 776 2757 407491166 407493122 0.000000e+00 2440.0
12 TraesCS6D01G329800 chr3A 79.664 1308 166 53 776 2021 716987968 716986699 0.000000e+00 850.0
13 TraesCS6D01G329800 chr5A 79.631 1301 165 55 780 2021 638083212 638081953 0.000000e+00 843.0
14 TraesCS6D01G329800 chr6B 80.160 877 127 28 780 1643 431404977 431405819 1.810000e-171 612.0
15 TraesCS6D01G329800 chr6B 92.694 219 14 2 339 555 655103930 655103712 5.730000e-82 315.0
16 TraesCS6D01G329800 chr6B 80.128 156 20 9 453 604 653195322 653195470 3.760000e-19 106.0
17 TraesCS6D01G329800 chr1D 83.236 686 96 11 1075 1750 267994594 267993918 1.810000e-171 612.0
18 TraesCS6D01G329800 chr1D 82.743 678 95 14 1075 1739 18171933 18171265 3.960000e-163 584.0
19 TraesCS6D01G329800 chr1D 94.395 339 19 0 1 339 391097714 391098052 3.150000e-144 521.0
20 TraesCS6D01G329800 chr3D 95.029 342 17 0 1 342 587475739 587475398 3.120000e-149 538.0
21 TraesCS6D01G329800 chr7A 94.100 339 20 0 1 339 18984363 18984701 1.460000e-142 516.0
22 TraesCS6D01G329800 chr7A 93.215 339 23 0 1 339 161219456 161219794 1.470000e-137 499.0
23 TraesCS6D01G329800 chr6A 94.118 340 19 1 1 339 602589287 602589626 1.460000e-142 516.0
24 TraesCS6D01G329800 chr6A 93.510 339 22 0 1 339 8344118 8344456 3.170000e-139 505.0
25 TraesCS6D01G329800 chr6A 91.915 235 14 3 339 570 579794834 579794602 9.520000e-85 324.0
26 TraesCS6D01G329800 chr2D 93.878 343 20 1 1 342 579764134 579763792 1.460000e-142 516.0
27 TraesCS6D01G329800 chr1A 94.100 339 20 0 1 339 29008039 29008377 1.460000e-142 516.0
28 TraesCS6D01G329800 chr2A 92.962 341 24 0 2 342 65242097 65241757 5.300000e-137 497.0
29 TraesCS6D01G329800 chr1B 81.379 145 21 5 2360 2500 52846611 52846469 2.240000e-21 113.0
30 TraesCS6D01G329800 chr5B 84.821 112 16 1 781 891 562332611 562332500 8.070000e-21 111.0
31 TraesCS6D01G329800 chrUn 100.000 33 0 0 2725 2757 476084805 476084773 8.240000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G329800 chr6D 433588765 433591521 2756 True 5092.000 5092 100.00000 1 2757 1 chr6D.!!$R1 2756
1 TraesCS6D01G329800 chr7D 370967559 370969592 2033 False 1662.500 3197 94.29000 778 2757 2 chr7D.!!$F3 1979
2 TraesCS6D01G329800 chr7D 209080592 209082578 1986 False 942.825 2137 95.25225 778 2757 4 chr7D.!!$F2 1979
3 TraesCS6D01G329800 chr7D 135503137 135503737 600 False 558.000 558 83.82800 1053 1643 1 chr7D.!!$F1 590
4 TraesCS6D01G329800 chr7B 407491166 407493122 1956 False 2440.000 2440 89.23800 776 2757 1 chr7B.!!$F1 1981
5 TraesCS6D01G329800 chr3A 716986699 716987968 1269 True 850.000 850 79.66400 776 2021 1 chr3A.!!$R1 1245
6 TraesCS6D01G329800 chr5A 638081953 638083212 1259 True 843.000 843 79.63100 780 2021 1 chr5A.!!$R1 1241
7 TraesCS6D01G329800 chr6B 431404977 431405819 842 False 612.000 612 80.16000 780 1643 1 chr6B.!!$F1 863
8 TraesCS6D01G329800 chr1D 267993918 267994594 676 True 612.000 612 83.23600 1075 1750 1 chr1D.!!$R2 675
9 TraesCS6D01G329800 chr1D 18171265 18171933 668 True 584.000 584 82.74300 1075 1739 1 chr1D.!!$R1 664

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 346 0.030603 GAGGAGGGAGGGATCCTTGT 60.031 60.0 12.58 0.0 46.12 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2081 2251 0.327591 ACCTCCCGTCTTCGACTAGT 59.672 55.0 0.0 0.0 39.71 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 2.785258 CTTGCCGAAGCTAACCGC 59.215 61.111 0.00 0.00 40.80 5.68
40 41 2.744709 TTGCCGAAGCTAACCGCC 60.745 61.111 0.00 0.00 40.39 6.13
72 73 4.408821 GCCACCGTGGAGCCATCA 62.409 66.667 22.37 0.00 40.96 3.07
73 74 2.124983 CCACCGTGGAGCCATCAG 60.125 66.667 12.68 0.00 40.96 2.90
74 75 2.659063 CCACCGTGGAGCCATCAGA 61.659 63.158 12.68 0.00 40.96 3.27
75 76 1.524002 CACCGTGGAGCCATCAGAT 59.476 57.895 0.00 0.00 0.00 2.90
76 77 0.531532 CACCGTGGAGCCATCAGATC 60.532 60.000 0.00 0.00 0.00 2.75
77 78 1.300465 CCGTGGAGCCATCAGATCG 60.300 63.158 0.00 0.00 0.00 3.69
78 79 1.735973 CGTGGAGCCATCAGATCGA 59.264 57.895 0.00 0.00 0.00 3.59
79 80 0.318529 CGTGGAGCCATCAGATCGAG 60.319 60.000 0.00 0.00 0.00 4.04
80 81 0.033228 GTGGAGCCATCAGATCGAGG 59.967 60.000 0.00 0.00 0.00 4.63
81 82 0.106015 TGGAGCCATCAGATCGAGGA 60.106 55.000 0.00 0.00 0.00 3.71
82 83 0.602562 GGAGCCATCAGATCGAGGAG 59.397 60.000 0.00 0.00 0.00 3.69
83 84 0.602562 GAGCCATCAGATCGAGGAGG 59.397 60.000 0.00 0.00 0.00 4.30
84 85 0.187117 AGCCATCAGATCGAGGAGGA 59.813 55.000 0.00 0.00 0.00 3.71
85 86 1.043816 GCCATCAGATCGAGGAGGAA 58.956 55.000 0.00 0.00 0.00 3.36
86 87 1.000731 GCCATCAGATCGAGGAGGAAG 59.999 57.143 0.00 0.00 0.00 3.46
87 88 2.591923 CCATCAGATCGAGGAGGAAGA 58.408 52.381 0.00 0.00 0.00 2.87
88 89 2.295909 CCATCAGATCGAGGAGGAAGAC 59.704 54.545 0.00 0.00 0.00 3.01
89 90 1.669604 TCAGATCGAGGAGGAAGACG 58.330 55.000 0.00 0.00 0.00 4.18
90 91 1.065345 TCAGATCGAGGAGGAAGACGT 60.065 52.381 0.00 0.00 0.00 4.34
91 92 1.332375 CAGATCGAGGAGGAAGACGTC 59.668 57.143 7.70 7.70 0.00 4.34
92 93 0.305313 GATCGAGGAGGAAGACGTCG 59.695 60.000 10.46 0.00 43.66 5.12
93 94 0.392729 ATCGAGGAGGAAGACGTCGT 60.393 55.000 10.46 6.85 43.10 4.34
94 95 1.134901 CGAGGAGGAAGACGTCGTG 59.865 63.158 9.23 0.00 39.61 4.35
95 96 1.575576 CGAGGAGGAAGACGTCGTGT 61.576 60.000 9.23 0.00 39.61 4.49
96 97 0.109689 GAGGAGGAAGACGTCGTGTG 60.110 60.000 9.23 0.00 0.00 3.82
97 98 1.733399 GGAGGAAGACGTCGTGTGC 60.733 63.158 9.23 4.51 0.00 4.57
98 99 1.733399 GAGGAAGACGTCGTGTGCC 60.733 63.158 11.69 11.69 0.00 5.01
99 100 3.103911 GGAAGACGTCGTGTGCCG 61.104 66.667 9.23 0.00 38.13 5.69
100 101 2.050714 GAAGACGTCGTGTGCCGA 60.051 61.111 9.23 0.00 45.00 5.54
145 146 4.293648 CGAGTGTCGGCACCACCA 62.294 66.667 18.18 0.00 46.35 4.17
146 147 2.665185 GAGTGTCGGCACCACCAC 60.665 66.667 18.18 0.00 46.35 4.16
147 148 4.602259 AGTGTCGGCACCACCACG 62.602 66.667 18.18 0.00 46.35 4.94
166 167 4.363990 CGCCATCGGATCGGGAGG 62.364 72.222 0.00 4.29 0.00 4.30
167 168 2.917751 GCCATCGGATCGGGAGGA 60.918 66.667 13.48 0.00 0.00 3.71
168 169 2.936912 GCCATCGGATCGGGAGGAG 61.937 68.421 13.48 0.80 0.00 3.69
169 170 2.279069 CCATCGGATCGGGAGGAGG 61.279 68.421 0.00 0.00 0.00 4.30
170 171 1.228583 CATCGGATCGGGAGGAGGA 60.229 63.158 0.00 0.00 0.00 3.71
171 172 1.075836 ATCGGATCGGGAGGAGGAG 59.924 63.158 0.00 0.00 0.00 3.69
172 173 2.433646 ATCGGATCGGGAGGAGGAGG 62.434 65.000 0.00 0.00 0.00 4.30
173 174 2.936007 GGATCGGGAGGAGGAGGA 59.064 66.667 0.00 0.00 0.00 3.71
174 175 1.228737 GGATCGGGAGGAGGAGGAG 60.229 68.421 0.00 0.00 0.00 3.69
175 176 1.906333 GATCGGGAGGAGGAGGAGC 60.906 68.421 0.00 0.00 0.00 4.70
176 177 3.460478 ATCGGGAGGAGGAGGAGCC 62.460 68.421 0.00 0.00 0.00 4.70
237 238 4.659172 CAGCGCCACCAAAGGGGA 62.659 66.667 2.29 0.00 43.81 4.81
238 239 4.351054 AGCGCCACCAAAGGGGAG 62.351 66.667 2.29 0.00 43.81 4.30
339 340 3.822035 TCGCGAGGAGGGAGGGAT 61.822 66.667 3.71 0.00 36.85 3.85
340 341 3.299190 CGCGAGGAGGGAGGGATC 61.299 72.222 0.00 0.00 34.27 3.36
341 342 2.920384 GCGAGGAGGGAGGGATCC 60.920 72.222 1.92 1.92 35.71 3.36
343 344 1.234529 CGAGGAGGGAGGGATCCTT 59.765 63.158 12.58 3.01 46.12 3.36
344 345 1.118356 CGAGGAGGGAGGGATCCTTG 61.118 65.000 12.58 0.00 46.12 3.61
345 346 0.030603 GAGGAGGGAGGGATCCTTGT 60.031 60.000 12.58 0.00 46.12 3.16
346 347 1.220750 GAGGAGGGAGGGATCCTTGTA 59.779 57.143 12.58 0.00 46.12 2.41
347 348 1.221781 AGGAGGGAGGGATCCTTGTAG 59.778 57.143 12.58 0.00 43.62 2.74
348 349 1.062044 GGAGGGAGGGATCCTTGTAGT 60.062 57.143 12.58 0.00 34.21 2.73
349 350 2.321719 GAGGGAGGGATCCTTGTAGTC 58.678 57.143 12.58 0.00 34.21 2.59
350 351 1.940957 AGGGAGGGATCCTTGTAGTCT 59.059 52.381 12.58 0.00 31.76 3.24
351 352 2.043227 GGGAGGGATCCTTGTAGTCTG 58.957 57.143 12.58 0.00 31.76 3.51
352 353 2.043227 GGAGGGATCCTTGTAGTCTGG 58.957 57.143 12.58 0.00 31.76 3.86
353 354 1.414550 GAGGGATCCTTGTAGTCTGGC 59.585 57.143 12.58 0.00 31.76 4.85
354 355 1.204146 GGGATCCTTGTAGTCTGGCA 58.796 55.000 12.58 0.00 0.00 4.92
355 356 1.559682 GGGATCCTTGTAGTCTGGCAA 59.440 52.381 12.58 0.00 0.00 4.52
356 357 2.173569 GGGATCCTTGTAGTCTGGCAAT 59.826 50.000 12.58 0.00 0.00 3.56
357 358 3.209410 GGATCCTTGTAGTCTGGCAATG 58.791 50.000 3.84 0.00 0.00 2.82
358 359 3.370953 GGATCCTTGTAGTCTGGCAATGT 60.371 47.826 3.84 0.00 0.00 2.71
359 360 4.141711 GGATCCTTGTAGTCTGGCAATGTA 60.142 45.833 3.84 0.00 0.00 2.29
360 361 4.901197 TCCTTGTAGTCTGGCAATGTAA 57.099 40.909 0.00 0.00 0.00 2.41
361 362 5.235850 TCCTTGTAGTCTGGCAATGTAAA 57.764 39.130 0.00 0.00 0.00 2.01
362 363 5.245531 TCCTTGTAGTCTGGCAATGTAAAG 58.754 41.667 0.00 0.00 0.00 1.85
363 364 4.142600 CCTTGTAGTCTGGCAATGTAAAGC 60.143 45.833 0.00 0.00 0.00 3.51
364 365 4.286297 TGTAGTCTGGCAATGTAAAGCT 57.714 40.909 0.00 0.00 0.00 3.74
365 366 5.414789 TGTAGTCTGGCAATGTAAAGCTA 57.585 39.130 0.00 0.00 0.00 3.32
366 367 5.989477 TGTAGTCTGGCAATGTAAAGCTAT 58.011 37.500 0.00 0.00 0.00 2.97
367 368 6.414732 TGTAGTCTGGCAATGTAAAGCTATT 58.585 36.000 0.00 0.00 0.00 1.73
368 369 7.561251 TGTAGTCTGGCAATGTAAAGCTATTA 58.439 34.615 0.00 0.00 0.00 0.98
369 370 7.710907 TGTAGTCTGGCAATGTAAAGCTATTAG 59.289 37.037 0.00 0.00 0.00 1.73
370 371 6.889198 AGTCTGGCAATGTAAAGCTATTAGA 58.111 36.000 0.00 0.00 0.00 2.10
371 372 7.512992 AGTCTGGCAATGTAAAGCTATTAGAT 58.487 34.615 0.00 0.00 0.00 1.98
372 373 7.443575 AGTCTGGCAATGTAAAGCTATTAGATG 59.556 37.037 0.00 0.00 0.00 2.90
373 374 7.227512 GTCTGGCAATGTAAAGCTATTAGATGT 59.772 37.037 0.00 0.00 0.00 3.06
374 375 7.227314 TCTGGCAATGTAAAGCTATTAGATGTG 59.773 37.037 0.00 0.00 0.00 3.21
375 376 7.053498 TGGCAATGTAAAGCTATTAGATGTGA 58.947 34.615 0.00 0.00 0.00 3.58
376 377 7.012327 TGGCAATGTAAAGCTATTAGATGTGAC 59.988 37.037 0.00 0.00 0.00 3.67
377 378 7.065894 GCAATGTAAAGCTATTAGATGTGACG 58.934 38.462 0.00 0.00 0.00 4.35
378 379 7.042725 GCAATGTAAAGCTATTAGATGTGACGA 60.043 37.037 0.00 0.00 0.00 4.20
379 380 7.932120 ATGTAAAGCTATTAGATGTGACGAC 57.068 36.000 0.00 0.00 0.00 4.34
380 381 5.969435 TGTAAAGCTATTAGATGTGACGACG 59.031 40.000 0.00 0.00 0.00 5.12
381 382 3.627732 AGCTATTAGATGTGACGACGG 57.372 47.619 0.00 0.00 0.00 4.79
382 383 2.052157 GCTATTAGATGTGACGACGGC 58.948 52.381 0.00 0.00 0.00 5.68
383 384 2.287668 GCTATTAGATGTGACGACGGCT 60.288 50.000 0.65 0.00 0.00 5.52
384 385 2.961526 ATTAGATGTGACGACGGCTT 57.038 45.000 0.65 0.00 0.00 4.35
385 386 1.990799 TTAGATGTGACGACGGCTTG 58.009 50.000 0.65 0.00 0.00 4.01
386 387 0.885879 TAGATGTGACGACGGCTTGT 59.114 50.000 0.65 0.00 0.00 3.16
387 388 0.885879 AGATGTGACGACGGCTTGTA 59.114 50.000 0.65 0.00 0.00 2.41
388 389 1.135373 AGATGTGACGACGGCTTGTAG 60.135 52.381 0.65 0.00 0.00 2.74
389 390 0.885879 ATGTGACGACGGCTTGTAGA 59.114 50.000 0.65 0.00 0.00 2.59
390 391 0.669619 TGTGACGACGGCTTGTAGAA 59.330 50.000 0.65 0.00 0.00 2.10
391 392 1.335597 TGTGACGACGGCTTGTAGAAG 60.336 52.381 0.65 0.00 0.00 2.85
392 393 0.956633 TGACGACGGCTTGTAGAAGT 59.043 50.000 0.65 0.00 0.00 3.01
393 394 1.338973 TGACGACGGCTTGTAGAAGTT 59.661 47.619 0.65 0.00 0.00 2.66
394 395 1.719780 GACGACGGCTTGTAGAAGTTG 59.280 52.381 0.00 0.00 0.00 3.16
395 396 1.338973 ACGACGGCTTGTAGAAGTTGA 59.661 47.619 0.00 0.00 0.00 3.18
396 397 2.029290 ACGACGGCTTGTAGAAGTTGAT 60.029 45.455 0.00 0.00 0.00 2.57
397 398 2.993899 CGACGGCTTGTAGAAGTTGATT 59.006 45.455 1.12 0.00 0.00 2.57
398 399 4.171005 CGACGGCTTGTAGAAGTTGATTA 58.829 43.478 1.12 0.00 0.00 1.75
399 400 4.624024 CGACGGCTTGTAGAAGTTGATTAA 59.376 41.667 1.12 0.00 0.00 1.40
400 401 5.220228 CGACGGCTTGTAGAAGTTGATTAAG 60.220 44.000 1.12 0.00 0.00 1.85
401 402 5.790593 ACGGCTTGTAGAAGTTGATTAAGA 58.209 37.500 1.12 0.00 0.00 2.10
402 403 5.638234 ACGGCTTGTAGAAGTTGATTAAGAC 59.362 40.000 1.12 0.00 0.00 3.01
403 404 5.637810 CGGCTTGTAGAAGTTGATTAAGACA 59.362 40.000 1.12 0.00 0.00 3.41
404 405 6.183360 CGGCTTGTAGAAGTTGATTAAGACAG 60.183 42.308 1.12 0.00 0.00 3.51
405 406 6.402658 GGCTTGTAGAAGTTGATTAAGACAGC 60.403 42.308 1.12 0.00 0.00 4.40
406 407 6.370166 GCTTGTAGAAGTTGATTAAGACAGCT 59.630 38.462 1.12 0.00 0.00 4.24
407 408 7.095017 GCTTGTAGAAGTTGATTAAGACAGCTT 60.095 37.037 11.92 11.92 40.38 3.74
408 409 9.424319 CTTGTAGAAGTTGATTAAGACAGCTTA 57.576 33.333 12.01 0.00 38.50 3.09
421 422 6.546428 AAGACAGCTTAATAACTAGCCAGA 57.454 37.500 0.00 0.00 38.14 3.86
422 423 6.739331 AGACAGCTTAATAACTAGCCAGAT 57.261 37.500 0.00 0.00 38.14 2.90
423 424 6.754193 AGACAGCTTAATAACTAGCCAGATC 58.246 40.000 0.00 0.00 38.14 2.75
424 425 6.325028 AGACAGCTTAATAACTAGCCAGATCA 59.675 38.462 0.00 0.00 38.14 2.92
425 426 7.016072 AGACAGCTTAATAACTAGCCAGATCAT 59.984 37.037 0.00 0.00 38.14 2.45
426 427 8.195165 ACAGCTTAATAACTAGCCAGATCATA 57.805 34.615 0.00 0.00 38.14 2.15
427 428 8.820831 ACAGCTTAATAACTAGCCAGATCATAT 58.179 33.333 0.00 0.00 38.14 1.78
428 429 9.311916 CAGCTTAATAACTAGCCAGATCATATC 57.688 37.037 0.00 0.00 38.14 1.63
429 430 9.040259 AGCTTAATAACTAGCCAGATCATATCA 57.960 33.333 0.00 0.00 38.14 2.15
430 431 9.658799 GCTTAATAACTAGCCAGATCATATCAA 57.341 33.333 0.00 0.00 0.00 2.57
436 437 8.845413 AACTAGCCAGATCATATCAAGAATTC 57.155 34.615 0.00 0.00 0.00 2.17
437 438 7.971201 ACTAGCCAGATCATATCAAGAATTCA 58.029 34.615 8.44 0.00 0.00 2.57
438 439 8.435187 ACTAGCCAGATCATATCAAGAATTCAA 58.565 33.333 8.44 0.00 0.00 2.69
439 440 7.747155 AGCCAGATCATATCAAGAATTCAAG 57.253 36.000 8.44 0.00 0.00 3.02
440 441 6.207025 AGCCAGATCATATCAAGAATTCAAGC 59.793 38.462 8.44 0.00 0.00 4.01
441 442 6.569994 GCCAGATCATATCAAGAATTCAAGCC 60.570 42.308 8.44 0.00 0.00 4.35
442 443 6.715718 CCAGATCATATCAAGAATTCAAGCCT 59.284 38.462 8.44 0.00 0.00 4.58
443 444 7.094720 CCAGATCATATCAAGAATTCAAGCCTC 60.095 40.741 8.44 0.00 0.00 4.70
444 445 7.444487 CAGATCATATCAAGAATTCAAGCCTCA 59.556 37.037 8.44 0.00 0.00 3.86
445 446 7.662258 AGATCATATCAAGAATTCAAGCCTCAG 59.338 37.037 8.44 0.00 0.00 3.35
446 447 6.060136 TCATATCAAGAATTCAAGCCTCAGG 58.940 40.000 8.44 0.00 0.00 3.86
456 457 3.190878 GCCTCAGGCCACGAAATG 58.809 61.111 3.37 0.00 44.06 2.32
457 458 3.056313 GCCTCAGGCCACGAAATGC 62.056 63.158 3.37 0.42 44.06 3.56
462 463 3.680156 GGCCACGAAATGCCTTGA 58.320 55.556 0.00 0.00 44.46 3.02
463 464 1.212751 GGCCACGAAATGCCTTGAC 59.787 57.895 0.00 0.00 44.46 3.18
464 465 1.523154 GGCCACGAAATGCCTTGACA 61.523 55.000 0.00 0.00 44.46 3.58
465 466 0.387239 GCCACGAAATGCCTTGACAC 60.387 55.000 0.00 0.00 0.00 3.67
466 467 1.238439 CCACGAAATGCCTTGACACT 58.762 50.000 0.00 0.00 0.00 3.55
467 468 1.197721 CCACGAAATGCCTTGACACTC 59.802 52.381 0.00 0.00 0.00 3.51
468 469 1.872952 CACGAAATGCCTTGACACTCA 59.127 47.619 0.00 0.00 0.00 3.41
469 470 2.485426 CACGAAATGCCTTGACACTCAT 59.515 45.455 0.00 0.00 0.00 2.90
470 471 2.744202 ACGAAATGCCTTGACACTCATC 59.256 45.455 0.00 0.00 0.00 2.92
471 472 3.005554 CGAAATGCCTTGACACTCATCT 58.994 45.455 0.00 0.00 0.00 2.90
472 473 3.438087 CGAAATGCCTTGACACTCATCTT 59.562 43.478 0.00 0.00 0.00 2.40
473 474 4.436584 CGAAATGCCTTGACACTCATCTTC 60.437 45.833 0.00 0.00 0.00 2.87
474 475 3.996921 ATGCCTTGACACTCATCTTCT 57.003 42.857 0.00 0.00 0.00 2.85
475 476 5.426689 AATGCCTTGACACTCATCTTCTA 57.573 39.130 0.00 0.00 0.00 2.10
476 477 5.627182 ATGCCTTGACACTCATCTTCTAT 57.373 39.130 0.00 0.00 0.00 1.98
477 478 5.426689 TGCCTTGACACTCATCTTCTATT 57.573 39.130 0.00 0.00 0.00 1.73
478 479 5.809001 TGCCTTGACACTCATCTTCTATTT 58.191 37.500 0.00 0.00 0.00 1.40
479 480 6.240894 TGCCTTGACACTCATCTTCTATTTT 58.759 36.000 0.00 0.00 0.00 1.82
480 481 6.372659 TGCCTTGACACTCATCTTCTATTTTC 59.627 38.462 0.00 0.00 0.00 2.29
481 482 6.597280 GCCTTGACACTCATCTTCTATTTTCT 59.403 38.462 0.00 0.00 0.00 2.52
482 483 7.413877 GCCTTGACACTCATCTTCTATTTTCTG 60.414 40.741 0.00 0.00 0.00 3.02
483 484 7.605691 CCTTGACACTCATCTTCTATTTTCTGT 59.394 37.037 0.00 0.00 0.00 3.41
484 485 8.908786 TTGACACTCATCTTCTATTTTCTGTT 57.091 30.769 0.00 0.00 0.00 3.16
485 486 8.539770 TGACACTCATCTTCTATTTTCTGTTC 57.460 34.615 0.00 0.00 0.00 3.18
486 487 8.370940 TGACACTCATCTTCTATTTTCTGTTCT 58.629 33.333 0.00 0.00 0.00 3.01
487 488 9.862371 GACACTCATCTTCTATTTTCTGTTCTA 57.138 33.333 0.00 0.00 0.00 2.10
497 498 9.547753 TTCTATTTTCTGTTCTATATGGACTGC 57.452 33.333 0.00 0.00 0.00 4.40
498 499 6.851222 ATTTTCTGTTCTATATGGACTGCG 57.149 37.500 0.00 0.00 0.00 5.18
499 500 5.339008 TTTCTGTTCTATATGGACTGCGT 57.661 39.130 0.00 0.00 0.00 5.24
500 501 4.307443 TCTGTTCTATATGGACTGCGTG 57.693 45.455 0.00 0.00 0.00 5.34
501 502 3.951680 TCTGTTCTATATGGACTGCGTGA 59.048 43.478 0.00 0.00 0.00 4.35
502 503 4.036852 TCTGTTCTATATGGACTGCGTGAG 59.963 45.833 0.00 0.00 0.00 3.51
520 521 3.124921 CCCCAAGCGTACGCCAAG 61.125 66.667 34.88 23.91 43.17 3.61
521 522 2.358247 CCCAAGCGTACGCCAAGT 60.358 61.111 34.88 15.48 43.17 3.16
522 523 2.677003 CCCAAGCGTACGCCAAGTG 61.677 63.158 34.88 25.45 43.17 3.16
523 524 2.173382 CAAGCGTACGCCAAGTGC 59.827 61.111 34.88 7.62 43.17 4.40
524 525 2.280524 AAGCGTACGCCAAGTGCA 60.281 55.556 34.88 0.00 43.17 4.57
525 526 1.890041 AAGCGTACGCCAAGTGCAA 60.890 52.632 34.88 0.00 43.17 4.08
526 527 1.841663 AAGCGTACGCCAAGTGCAAG 61.842 55.000 34.88 0.00 43.17 4.01
527 528 2.314647 GCGTACGCCAAGTGCAAGA 61.315 57.895 29.51 0.00 41.33 3.02
528 529 1.837538 GCGTACGCCAAGTGCAAGAA 61.838 55.000 29.51 0.00 41.33 2.52
529 530 0.796312 CGTACGCCAAGTGCAAGAAT 59.204 50.000 0.52 0.00 41.33 2.40
530 531 1.196808 CGTACGCCAAGTGCAAGAATT 59.803 47.619 0.52 0.00 41.33 2.17
531 532 2.350388 CGTACGCCAAGTGCAAGAATTT 60.350 45.455 0.52 0.00 41.33 1.82
532 533 2.888834 ACGCCAAGTGCAAGAATTTT 57.111 40.000 0.00 0.00 41.33 1.82
533 534 4.611807 CGTACGCCAAGTGCAAGAATTTTA 60.612 41.667 0.52 0.00 41.33 1.52
534 535 4.519540 ACGCCAAGTGCAAGAATTTTAT 57.480 36.364 0.00 0.00 41.33 1.40
535 536 5.637006 ACGCCAAGTGCAAGAATTTTATA 57.363 34.783 0.00 0.00 41.33 0.98
536 537 6.207691 ACGCCAAGTGCAAGAATTTTATAT 57.792 33.333 0.00 0.00 41.33 0.86
537 538 6.035843 ACGCCAAGTGCAAGAATTTTATATG 58.964 36.000 0.00 0.00 41.33 1.78
538 539 5.459762 CGCCAAGTGCAAGAATTTTATATGG 59.540 40.000 0.00 0.00 41.33 2.74
539 540 5.234972 GCCAAGTGCAAGAATTTTATATGGC 59.765 40.000 0.00 0.00 41.25 4.40
540 541 5.754890 CCAAGTGCAAGAATTTTATATGGCC 59.245 40.000 0.00 0.00 0.00 5.36
541 542 5.186996 AGTGCAAGAATTTTATATGGCCG 57.813 39.130 0.00 0.00 0.00 6.13
542 543 4.887071 AGTGCAAGAATTTTATATGGCCGA 59.113 37.500 0.00 0.00 0.00 5.54
543 544 5.359576 AGTGCAAGAATTTTATATGGCCGAA 59.640 36.000 0.00 0.00 0.00 4.30
544 545 5.458779 GTGCAAGAATTTTATATGGCCGAAC 59.541 40.000 0.00 0.00 0.00 3.95
545 546 4.675114 GCAAGAATTTTATATGGCCGAACG 59.325 41.667 0.00 0.00 0.00 3.95
546 547 5.732247 GCAAGAATTTTATATGGCCGAACGT 60.732 40.000 0.00 0.00 0.00 3.99
547 548 6.512091 GCAAGAATTTTATATGGCCGAACGTA 60.512 38.462 0.00 0.00 0.00 3.57
548 549 6.535274 AGAATTTTATATGGCCGAACGTAC 57.465 37.500 0.00 0.00 0.00 3.67
549 550 6.285990 AGAATTTTATATGGCCGAACGTACT 58.714 36.000 0.00 0.00 0.00 2.73
550 551 6.764560 AGAATTTTATATGGCCGAACGTACTT 59.235 34.615 0.00 0.00 0.00 2.24
551 552 5.971895 TTTTATATGGCCGAACGTACTTC 57.028 39.130 0.00 0.00 0.00 3.01
552 553 2.521105 ATATGGCCGAACGTACTTCC 57.479 50.000 0.00 0.00 0.00 3.46
553 554 0.101040 TATGGCCGAACGTACTTCCG 59.899 55.000 0.00 0.00 0.00 4.30
554 555 2.507769 GGCCGAACGTACTTCCGG 60.508 66.667 0.00 0.00 0.00 5.14
555 556 3.184003 GCCGAACGTACTTCCGGC 61.184 66.667 20.19 20.19 39.63 6.13
556 557 2.507769 CCGAACGTACTTCCGGCC 60.508 66.667 0.00 0.00 0.00 6.13
557 558 2.877582 CGAACGTACTTCCGGCCG 60.878 66.667 21.04 21.04 0.00 6.13
558 559 2.507769 GAACGTACTTCCGGCCGG 60.508 66.667 39.13 39.13 0.00 6.13
559 560 3.995219 GAACGTACTTCCGGCCGGG 62.995 68.421 42.36 29.84 35.59 5.73
575 576 4.479993 GGGCACGCAGATGCTCCT 62.480 66.667 2.95 0.00 45.38 3.69
576 577 2.437359 GGCACGCAGATGCTCCTT 60.437 61.111 2.95 0.00 45.38 3.36
577 578 2.042831 GGCACGCAGATGCTCCTTT 61.043 57.895 2.95 0.00 45.38 3.11
578 579 1.427020 GCACGCAGATGCTCCTTTC 59.573 57.895 2.95 0.00 42.62 2.62
579 580 1.986575 GCACGCAGATGCTCCTTTCC 61.987 60.000 2.95 0.00 42.62 3.13
580 581 0.674581 CACGCAGATGCTCCTTTCCA 60.675 55.000 2.95 0.00 39.32 3.53
581 582 0.674895 ACGCAGATGCTCCTTTCCAC 60.675 55.000 2.95 0.00 39.32 4.02
582 583 0.392193 CGCAGATGCTCCTTTCCACT 60.392 55.000 2.95 0.00 39.32 4.00
583 584 1.377536 GCAGATGCTCCTTTCCACTC 58.622 55.000 0.00 0.00 38.21 3.51
584 585 1.339438 GCAGATGCTCCTTTCCACTCA 60.339 52.381 0.00 0.00 38.21 3.41
585 586 2.354259 CAGATGCTCCTTTCCACTCAC 58.646 52.381 0.00 0.00 0.00 3.51
586 587 1.980765 AGATGCTCCTTTCCACTCACA 59.019 47.619 0.00 0.00 0.00 3.58
587 588 2.373169 AGATGCTCCTTTCCACTCACAA 59.627 45.455 0.00 0.00 0.00 3.33
588 589 1.967319 TGCTCCTTTCCACTCACAAC 58.033 50.000 0.00 0.00 0.00 3.32
589 590 1.490490 TGCTCCTTTCCACTCACAACT 59.510 47.619 0.00 0.00 0.00 3.16
590 591 2.092429 TGCTCCTTTCCACTCACAACTT 60.092 45.455 0.00 0.00 0.00 2.66
591 592 2.952310 GCTCCTTTCCACTCACAACTTT 59.048 45.455 0.00 0.00 0.00 2.66
592 593 3.243201 GCTCCTTTCCACTCACAACTTTG 60.243 47.826 0.00 0.00 0.00 2.77
593 594 3.287222 TCCTTTCCACTCACAACTTTGG 58.713 45.455 0.00 0.00 0.00 3.28
594 595 2.223805 CCTTTCCACTCACAACTTTGGC 60.224 50.000 0.00 0.00 0.00 4.52
595 596 1.021202 TTCCACTCACAACTTTGGCG 58.979 50.000 0.00 0.00 0.00 5.69
596 597 0.817634 TCCACTCACAACTTTGGCGG 60.818 55.000 0.00 0.00 0.00 6.13
597 598 0.817634 CCACTCACAACTTTGGCGGA 60.818 55.000 0.00 0.00 0.00 5.54
598 599 1.021202 CACTCACAACTTTGGCGGAA 58.979 50.000 0.00 0.00 0.00 4.30
599 600 1.002468 CACTCACAACTTTGGCGGAAG 60.002 52.381 0.00 0.00 0.00 3.46
600 601 1.308998 CTCACAACTTTGGCGGAAGT 58.691 50.000 0.77 0.77 41.44 3.01
601 602 2.158871 ACTCACAACTTTGGCGGAAGTA 60.159 45.455 6.52 0.00 38.86 2.24
602 603 2.215196 TCACAACTTTGGCGGAAGTAC 58.785 47.619 6.52 0.00 38.86 2.73
603 604 1.265905 CACAACTTTGGCGGAAGTACC 59.734 52.381 6.52 0.00 38.86 3.34
616 617 4.923264 GGAAGTACCGTGTCTCATTTTC 57.077 45.455 0.00 0.00 0.00 2.29
617 618 3.683340 GGAAGTACCGTGTCTCATTTTCC 59.317 47.826 0.00 0.00 0.00 3.13
618 619 3.329929 AGTACCGTGTCTCATTTTCCC 57.670 47.619 0.00 0.00 0.00 3.97
619 620 2.904434 AGTACCGTGTCTCATTTTCCCT 59.096 45.455 0.00 0.00 0.00 4.20
620 621 2.185004 ACCGTGTCTCATTTTCCCTG 57.815 50.000 0.00 0.00 0.00 4.45
621 622 1.697432 ACCGTGTCTCATTTTCCCTGA 59.303 47.619 0.00 0.00 0.00 3.86
622 623 2.076863 CCGTGTCTCATTTTCCCTGAC 58.923 52.381 0.00 0.00 0.00 3.51
623 624 2.549992 CCGTGTCTCATTTTCCCTGACA 60.550 50.000 0.00 0.00 35.62 3.58
624 625 3.138304 CGTGTCTCATTTTCCCTGACAA 58.862 45.455 0.00 0.00 39.01 3.18
625 626 3.563808 CGTGTCTCATTTTCCCTGACAAA 59.436 43.478 0.00 0.00 39.01 2.83
626 627 4.554723 CGTGTCTCATTTTCCCTGACAAAC 60.555 45.833 0.00 0.00 39.01 2.93
627 628 3.888930 TGTCTCATTTTCCCTGACAAACC 59.111 43.478 0.00 0.00 35.15 3.27
628 629 3.888930 GTCTCATTTTCCCTGACAAACCA 59.111 43.478 0.00 0.00 0.00 3.67
629 630 4.524328 GTCTCATTTTCCCTGACAAACCAT 59.476 41.667 0.00 0.00 0.00 3.55
630 631 5.710099 GTCTCATTTTCCCTGACAAACCATA 59.290 40.000 0.00 0.00 0.00 2.74
631 632 5.710099 TCTCATTTTCCCTGACAAACCATAC 59.290 40.000 0.00 0.00 0.00 2.39
632 633 4.457603 TCATTTTCCCTGACAAACCATACG 59.542 41.667 0.00 0.00 0.00 3.06
633 634 2.483014 TTCCCTGACAAACCATACGG 57.517 50.000 0.00 0.00 38.77 4.02
642 643 2.046314 ACCATACGGTGCACTGGC 60.046 61.111 28.65 6.06 46.79 4.85
643 644 2.268920 CCATACGGTGCACTGGCT 59.731 61.111 28.65 13.09 41.91 4.75
644 645 1.261938 ACCATACGGTGCACTGGCTA 61.262 55.000 28.65 13.96 46.79 3.93
645 646 0.106708 CCATACGGTGCACTGGCTAT 59.893 55.000 28.65 15.58 41.91 2.97
646 647 1.220529 CATACGGTGCACTGGCTATG 58.779 55.000 28.65 22.16 41.91 2.23
647 648 0.532862 ATACGGTGCACTGGCTATGC 60.533 55.000 28.65 2.97 43.68 3.14
648 649 1.613317 TACGGTGCACTGGCTATGCT 61.613 55.000 28.65 9.15 43.77 3.79
649 650 1.746615 CGGTGCACTGGCTATGCTT 60.747 57.895 18.43 0.00 43.77 3.91
650 651 1.308069 CGGTGCACTGGCTATGCTTT 61.308 55.000 18.43 0.00 43.77 3.51
651 652 0.890683 GGTGCACTGGCTATGCTTTT 59.109 50.000 17.98 0.00 43.77 2.27
652 653 1.135286 GGTGCACTGGCTATGCTTTTC 60.135 52.381 17.98 0.00 43.77 2.29
653 654 1.135286 GTGCACTGGCTATGCTTTTCC 60.135 52.381 10.32 0.00 43.77 3.13
654 655 1.176527 GCACTGGCTATGCTTTTCCA 58.823 50.000 6.33 0.00 40.08 3.53
657 658 2.425143 CTGGCTATGCTTTTCCAGGA 57.575 50.000 10.25 0.00 41.71 3.86
658 659 2.295885 CTGGCTATGCTTTTCCAGGAG 58.704 52.381 10.25 0.00 41.71 3.69
659 660 1.915489 TGGCTATGCTTTTCCAGGAGA 59.085 47.619 0.00 0.00 0.00 3.71
660 661 2.092753 TGGCTATGCTTTTCCAGGAGAG 60.093 50.000 0.00 0.00 35.33 3.20
661 662 2.092699 GGCTATGCTTTTCCAGGAGAGT 60.093 50.000 0.00 0.00 34.71 3.24
662 663 2.941720 GCTATGCTTTTCCAGGAGAGTG 59.058 50.000 0.00 0.00 34.71 3.51
663 664 3.620966 GCTATGCTTTTCCAGGAGAGTGT 60.621 47.826 0.00 0.00 34.71 3.55
664 665 2.260844 TGCTTTTCCAGGAGAGTGTG 57.739 50.000 0.00 0.00 0.00 3.82
665 666 1.490490 TGCTTTTCCAGGAGAGTGTGT 59.510 47.619 0.00 0.00 0.00 3.72
666 667 1.876156 GCTTTTCCAGGAGAGTGTGTG 59.124 52.381 0.00 0.00 0.00 3.82
667 668 2.746472 GCTTTTCCAGGAGAGTGTGTGT 60.746 50.000 0.00 0.00 0.00 3.72
668 669 2.620251 TTTCCAGGAGAGTGTGTGTG 57.380 50.000 0.00 0.00 0.00 3.82
669 670 0.106708 TTCCAGGAGAGTGTGTGTGC 59.893 55.000 0.00 0.00 0.00 4.57
670 671 1.665916 CCAGGAGAGTGTGTGTGCG 60.666 63.158 0.00 0.00 0.00 5.34
671 672 2.029666 AGGAGAGTGTGTGTGCGC 59.970 61.111 0.00 0.00 0.00 6.09
672 673 3.406361 GGAGAGTGTGTGTGCGCG 61.406 66.667 0.00 0.00 0.00 6.86
673 674 4.064491 GAGAGTGTGTGTGCGCGC 62.064 66.667 27.26 27.26 35.99 6.86
674 675 4.889856 AGAGTGTGTGTGCGCGCA 62.890 61.111 33.09 33.09 38.02 6.09
688 689 3.266376 CGCACCGTGGACGTTGTT 61.266 61.111 0.00 0.00 34.16 2.83
689 690 2.629763 GCACCGTGGACGTTGTTC 59.370 61.111 0.00 0.00 34.16 3.18
690 691 2.925352 CACCGTGGACGTTGTTCG 59.075 61.111 0.00 0.00 46.00 3.95
713 714 2.474561 CGAGGACGTACTAGCACCA 58.525 57.895 0.00 0.00 34.56 4.17
714 715 0.098376 CGAGGACGTACTAGCACCAC 59.902 60.000 0.00 0.00 34.56 4.16
715 716 0.098376 GAGGACGTACTAGCACCACG 59.902 60.000 0.00 5.53 41.32 4.94
716 717 1.138247 GGACGTACTAGCACCACGG 59.862 63.158 10.33 0.00 39.91 4.94
717 718 1.515736 GACGTACTAGCACCACGGC 60.516 63.158 10.33 4.76 39.91 5.68
718 719 2.203972 GACGTACTAGCACCACGGCA 62.204 60.000 7.51 0.00 43.20 5.69
719 720 1.804326 CGTACTAGCACCACGGCAC 60.804 63.158 0.00 0.00 35.83 5.01
741 742 4.821589 GCTCCGCTGGCGCTAACT 62.822 66.667 7.64 0.00 38.24 2.24
742 743 2.583593 CTCCGCTGGCGCTAACTC 60.584 66.667 7.64 0.00 38.24 3.01
743 744 3.356639 CTCCGCTGGCGCTAACTCA 62.357 63.158 7.64 0.00 38.24 3.41
744 745 3.188786 CCGCTGGCGCTAACTCAC 61.189 66.667 7.64 0.00 38.24 3.51
745 746 3.188786 CGCTGGCGCTAACTCACC 61.189 66.667 7.64 0.00 0.00 4.02
746 747 3.188786 GCTGGCGCTAACTCACCG 61.189 66.667 7.64 0.00 0.00 4.94
747 748 2.571757 CTGGCGCTAACTCACCGA 59.428 61.111 7.64 0.00 0.00 4.69
748 749 1.805945 CTGGCGCTAACTCACCGAC 60.806 63.158 7.64 0.00 0.00 4.79
749 750 2.508663 GGCGCTAACTCACCGACC 60.509 66.667 7.64 0.00 0.00 4.79
750 751 2.879462 GCGCTAACTCACCGACCG 60.879 66.667 0.00 0.00 0.00 4.79
751 752 2.202570 CGCTAACTCACCGACCGG 60.203 66.667 6.94 6.94 42.03 5.28
752 753 2.508663 GCTAACTCACCGACCGGC 60.509 66.667 8.55 0.00 39.32 6.13
753 754 2.202570 CTAACTCACCGACCGGCG 60.203 66.667 8.55 6.30 39.32 6.46
754 755 4.424566 TAACTCACCGACCGGCGC 62.425 66.667 8.55 0.00 39.32 6.53
768 769 3.864686 GCGCACCGTGTGGCTATG 61.865 66.667 13.80 0.00 39.70 2.23
769 770 3.864686 CGCACCGTGTGGCTATGC 61.865 66.667 4.02 0.00 39.70 3.14
770 771 3.864686 GCACCGTGTGGCTATGCG 61.865 66.667 0.00 0.00 39.70 4.73
771 772 3.864686 CACCGTGTGGCTATGCGC 61.865 66.667 0.00 0.00 39.70 6.09
871 873 7.741554 AATCTGTACCCTCAACTCTCTAATT 57.258 36.000 0.00 0.00 0.00 1.40
1157 1191 2.656069 GCGGGGTAGCAAGGTCTCA 61.656 63.158 0.00 0.00 37.05 3.27
1281 1317 6.026186 CCCTGGTAGGAGATATTATTCCTGT 58.974 44.000 12.26 0.00 43.54 4.00
1778 1859 9.829507 TGAAATTAAAATTCTGAATGTGGTTGT 57.170 25.926 3.22 0.00 0.00 3.32
2021 2133 2.544686 CGACGACTAGGTAGGACTCATG 59.455 54.545 0.00 0.00 0.00 3.07
2032 2144 2.645802 AGGACTCATGGACTAGTCGAC 58.354 52.381 16.56 7.70 42.51 4.20
2034 2146 1.331138 GACTCATGGACTAGTCGACGG 59.669 57.143 16.56 9.85 33.38 4.79
2079 2249 2.801679 CGACGACTAGGTAGGACTCATC 59.198 54.545 0.00 0.00 0.00 2.92
2080 2250 2.801679 GACGACTAGGTAGGACTCATCG 59.198 54.545 0.00 0.00 35.37 3.84
2081 2251 2.433604 ACGACTAGGTAGGACTCATCGA 59.566 50.000 0.00 0.00 34.16 3.59
2082 2252 2.801679 CGACTAGGTAGGACTCATCGAC 59.198 54.545 0.00 0.00 32.66 4.20
2083 2253 3.493002 CGACTAGGTAGGACTCATCGACT 60.493 52.174 0.00 0.00 32.66 4.18
2084 2254 4.261952 CGACTAGGTAGGACTCATCGACTA 60.262 50.000 0.00 0.00 32.66 2.59
2085 2255 5.217978 ACTAGGTAGGACTCATCGACTAG 57.782 47.826 0.00 0.00 0.00 2.57
2086 2256 4.655186 ACTAGGTAGGACTCATCGACTAGT 59.345 45.833 0.00 0.00 0.00 2.57
2087 2257 4.075963 AGGTAGGACTCATCGACTAGTC 57.924 50.000 13.18 13.18 41.16 2.59
2456 2643 1.821088 ACCCTCCACTTGTTCCTCTT 58.179 50.000 0.00 0.00 0.00 2.85
2493 2692 1.309876 TCCTCTCCCTAAGCCTCTCA 58.690 55.000 0.00 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.785258 GCGGTTAGCTTCGGCAAG 59.215 61.111 13.31 0.00 44.74 4.01
55 56 4.408821 TGATGGCTCCACGGTGGC 62.409 66.667 22.42 11.36 37.47 5.01
56 57 1.976132 ATCTGATGGCTCCACGGTGG 61.976 60.000 21.27 21.27 39.43 4.61
57 58 0.531532 GATCTGATGGCTCCACGGTG 60.532 60.000 0.00 0.00 0.00 4.94
58 59 1.826024 GATCTGATGGCTCCACGGT 59.174 57.895 0.00 0.00 0.00 4.83
59 60 1.300465 CGATCTGATGGCTCCACGG 60.300 63.158 0.00 0.00 0.00 4.94
60 61 0.318529 CTCGATCTGATGGCTCCACG 60.319 60.000 0.00 0.00 0.00 4.94
61 62 0.033228 CCTCGATCTGATGGCTCCAC 59.967 60.000 0.00 0.00 0.00 4.02
62 63 0.106015 TCCTCGATCTGATGGCTCCA 60.106 55.000 0.00 0.00 0.00 3.86
63 64 0.602562 CTCCTCGATCTGATGGCTCC 59.397 60.000 0.00 0.00 0.00 4.70
64 65 0.602562 CCTCCTCGATCTGATGGCTC 59.397 60.000 0.00 0.00 0.00 4.70
65 66 0.187117 TCCTCCTCGATCTGATGGCT 59.813 55.000 0.00 0.00 0.00 4.75
66 67 1.000731 CTTCCTCCTCGATCTGATGGC 59.999 57.143 0.00 0.00 0.00 4.40
67 68 2.295909 GTCTTCCTCCTCGATCTGATGG 59.704 54.545 0.00 0.00 0.00 3.51
68 69 2.031245 CGTCTTCCTCCTCGATCTGATG 60.031 54.545 0.00 0.00 0.00 3.07
69 70 2.226330 CGTCTTCCTCCTCGATCTGAT 58.774 52.381 0.00 0.00 0.00 2.90
70 71 1.065345 ACGTCTTCCTCCTCGATCTGA 60.065 52.381 0.00 0.00 0.00 3.27
71 72 1.332375 GACGTCTTCCTCCTCGATCTG 59.668 57.143 8.70 0.00 0.00 2.90
72 73 1.670791 GACGTCTTCCTCCTCGATCT 58.329 55.000 8.70 0.00 0.00 2.75
73 74 0.305313 CGACGTCTTCCTCCTCGATC 59.695 60.000 14.70 0.00 0.00 3.69
74 75 0.392729 ACGACGTCTTCCTCCTCGAT 60.393 55.000 14.70 0.00 0.00 3.59
75 76 1.004080 ACGACGTCTTCCTCCTCGA 60.004 57.895 14.70 0.00 0.00 4.04
76 77 1.134901 CACGACGTCTTCCTCCTCG 59.865 63.158 14.70 0.00 0.00 4.63
77 78 0.109689 CACACGACGTCTTCCTCCTC 60.110 60.000 14.70 0.00 0.00 3.71
78 79 1.957562 CACACGACGTCTTCCTCCT 59.042 57.895 14.70 0.00 0.00 3.69
79 80 1.733399 GCACACGACGTCTTCCTCC 60.733 63.158 14.70 0.00 0.00 4.30
80 81 1.733399 GGCACACGACGTCTTCCTC 60.733 63.158 14.70 0.00 0.00 3.71
81 82 2.338984 GGCACACGACGTCTTCCT 59.661 61.111 14.70 0.00 0.00 3.36
128 129 4.293648 TGGTGGTGCCGACACTCG 62.294 66.667 0.81 0.00 46.57 4.18
129 130 2.665185 GTGGTGGTGCCGACACTC 60.665 66.667 0.81 0.00 46.57 3.51
130 131 4.602259 CGTGGTGGTGCCGACACT 62.602 66.667 0.81 0.00 46.57 3.55
149 150 4.363990 CCTCCCGATCCGATGGCG 62.364 72.222 0.00 0.00 37.24 5.69
150 151 2.917751 TCCTCCCGATCCGATGGC 60.918 66.667 0.00 0.00 0.00 4.40
151 152 2.279069 CCTCCTCCCGATCCGATGG 61.279 68.421 0.00 0.00 0.00 3.51
152 153 1.228583 TCCTCCTCCCGATCCGATG 60.229 63.158 0.00 0.00 0.00 3.84
153 154 1.075836 CTCCTCCTCCCGATCCGAT 59.924 63.158 0.00 0.00 0.00 4.18
154 155 2.516405 CTCCTCCTCCCGATCCGA 59.484 66.667 0.00 0.00 0.00 4.55
155 156 2.598985 CCTCCTCCTCCCGATCCG 60.599 72.222 0.00 0.00 0.00 4.18
156 157 1.228737 CTCCTCCTCCTCCCGATCC 60.229 68.421 0.00 0.00 0.00 3.36
157 158 1.906333 GCTCCTCCTCCTCCCGATC 60.906 68.421 0.00 0.00 0.00 3.69
158 159 2.200092 GCTCCTCCTCCTCCCGAT 59.800 66.667 0.00 0.00 0.00 4.18
159 160 4.144727 GGCTCCTCCTCCTCCCGA 62.145 72.222 0.00 0.00 0.00 5.14
220 221 4.659172 TCCCCTTTGGTGGCGCTG 62.659 66.667 7.64 0.00 34.77 5.18
221 222 4.351054 CTCCCCTTTGGTGGCGCT 62.351 66.667 7.64 0.00 34.77 5.92
321 322 3.801068 ATCCCTCCCTCCTCGCGAG 62.801 68.421 29.06 29.06 38.46 5.03
322 323 3.793957 GATCCCTCCCTCCTCGCGA 62.794 68.421 9.26 9.26 0.00 5.87
323 324 3.299190 GATCCCTCCCTCCTCGCG 61.299 72.222 0.00 0.00 0.00 5.87
324 325 2.920384 GGATCCCTCCCTCCTCGC 60.920 72.222 0.00 0.00 35.28 5.03
325 326 1.118356 CAAGGATCCCTCCCTCCTCG 61.118 65.000 8.55 0.00 43.21 4.63
326 327 0.030603 ACAAGGATCCCTCCCTCCTC 60.031 60.000 8.55 0.00 43.21 3.71
327 328 1.221781 CTACAAGGATCCCTCCCTCCT 59.778 57.143 8.55 0.00 43.21 3.69
328 329 1.062044 ACTACAAGGATCCCTCCCTCC 60.062 57.143 8.55 0.00 43.21 4.30
329 330 2.090999 AGACTACAAGGATCCCTCCCTC 60.091 54.545 8.55 0.00 43.21 4.30
330 331 1.940957 AGACTACAAGGATCCCTCCCT 59.059 52.381 8.55 0.00 43.21 4.20
331 332 2.043227 CAGACTACAAGGATCCCTCCC 58.957 57.143 8.55 0.00 43.21 4.30
332 333 2.043227 CCAGACTACAAGGATCCCTCC 58.957 57.143 8.55 0.00 42.43 4.30
333 334 1.414550 GCCAGACTACAAGGATCCCTC 59.585 57.143 8.55 0.00 30.89 4.30
334 335 1.273838 TGCCAGACTACAAGGATCCCT 60.274 52.381 8.55 0.00 33.87 4.20
335 336 1.204146 TGCCAGACTACAAGGATCCC 58.796 55.000 8.55 0.00 0.00 3.85
336 337 3.209410 CATTGCCAGACTACAAGGATCC 58.791 50.000 2.48 2.48 29.38 3.36
337 338 3.878778 ACATTGCCAGACTACAAGGATC 58.121 45.455 8.53 0.00 32.25 3.36
338 339 5.435686 TTACATTGCCAGACTACAAGGAT 57.564 39.130 8.53 0.00 32.25 3.24
339 340 4.901197 TTACATTGCCAGACTACAAGGA 57.099 40.909 8.53 0.00 32.25 3.36
340 341 4.142600 GCTTTACATTGCCAGACTACAAGG 60.143 45.833 1.69 1.69 33.97 3.61
341 342 4.697352 AGCTTTACATTGCCAGACTACAAG 59.303 41.667 0.00 0.00 0.00 3.16
342 343 4.651778 AGCTTTACATTGCCAGACTACAA 58.348 39.130 0.00 0.00 0.00 2.41
343 344 4.286297 AGCTTTACATTGCCAGACTACA 57.714 40.909 0.00 0.00 0.00 2.74
344 345 6.927294 AATAGCTTTACATTGCCAGACTAC 57.073 37.500 0.00 0.00 0.00 2.73
345 346 8.018537 TCTAATAGCTTTACATTGCCAGACTA 57.981 34.615 0.00 0.00 0.00 2.59
346 347 6.889198 TCTAATAGCTTTACATTGCCAGACT 58.111 36.000 0.00 0.00 0.00 3.24
347 348 7.227512 ACATCTAATAGCTTTACATTGCCAGAC 59.772 37.037 0.00 0.00 0.00 3.51
348 349 7.227314 CACATCTAATAGCTTTACATTGCCAGA 59.773 37.037 0.00 0.00 0.00 3.86
349 350 7.227314 TCACATCTAATAGCTTTACATTGCCAG 59.773 37.037 0.00 0.00 0.00 4.85
350 351 7.012327 GTCACATCTAATAGCTTTACATTGCCA 59.988 37.037 0.00 0.00 0.00 4.92
351 352 7.355778 GTCACATCTAATAGCTTTACATTGCC 58.644 38.462 0.00 0.00 0.00 4.52
352 353 7.042725 TCGTCACATCTAATAGCTTTACATTGC 60.043 37.037 0.00 0.00 0.00 3.56
353 354 8.269424 GTCGTCACATCTAATAGCTTTACATTG 58.731 37.037 0.00 0.00 0.00 2.82
354 355 7.167635 CGTCGTCACATCTAATAGCTTTACATT 59.832 37.037 0.00 0.00 0.00 2.71
355 356 6.637254 CGTCGTCACATCTAATAGCTTTACAT 59.363 38.462 0.00 0.00 0.00 2.29
356 357 5.969435 CGTCGTCACATCTAATAGCTTTACA 59.031 40.000 0.00 0.00 0.00 2.41
357 358 5.398711 CCGTCGTCACATCTAATAGCTTTAC 59.601 44.000 0.00 0.00 0.00 2.01
358 359 5.516996 CCGTCGTCACATCTAATAGCTTTA 58.483 41.667 0.00 0.00 0.00 1.85
359 360 4.360563 CCGTCGTCACATCTAATAGCTTT 58.639 43.478 0.00 0.00 0.00 3.51
360 361 3.795826 GCCGTCGTCACATCTAATAGCTT 60.796 47.826 0.00 0.00 0.00 3.74
361 362 2.287668 GCCGTCGTCACATCTAATAGCT 60.288 50.000 0.00 0.00 0.00 3.32
362 363 2.052157 GCCGTCGTCACATCTAATAGC 58.948 52.381 0.00 0.00 0.00 2.97
363 364 3.627732 AGCCGTCGTCACATCTAATAG 57.372 47.619 0.00 0.00 0.00 1.73
364 365 3.129813 ACAAGCCGTCGTCACATCTAATA 59.870 43.478 0.00 0.00 0.00 0.98
365 366 2.094182 ACAAGCCGTCGTCACATCTAAT 60.094 45.455 0.00 0.00 0.00 1.73
366 367 1.271379 ACAAGCCGTCGTCACATCTAA 59.729 47.619 0.00 0.00 0.00 2.10
367 368 0.885879 ACAAGCCGTCGTCACATCTA 59.114 50.000 0.00 0.00 0.00 1.98
368 369 0.885879 TACAAGCCGTCGTCACATCT 59.114 50.000 0.00 0.00 0.00 2.90
369 370 1.135489 TCTACAAGCCGTCGTCACATC 60.135 52.381 0.00 0.00 0.00 3.06
370 371 0.885879 TCTACAAGCCGTCGTCACAT 59.114 50.000 0.00 0.00 0.00 3.21
371 372 0.669619 TTCTACAAGCCGTCGTCACA 59.330 50.000 0.00 0.00 0.00 3.58
372 373 1.335689 ACTTCTACAAGCCGTCGTCAC 60.336 52.381 0.00 0.00 32.09 3.67
373 374 0.956633 ACTTCTACAAGCCGTCGTCA 59.043 50.000 0.00 0.00 32.09 4.35
374 375 1.719780 CAACTTCTACAAGCCGTCGTC 59.280 52.381 0.00 0.00 32.09 4.20
375 376 1.338973 TCAACTTCTACAAGCCGTCGT 59.661 47.619 0.00 0.00 32.09 4.34
376 377 2.060326 TCAACTTCTACAAGCCGTCG 57.940 50.000 0.00 0.00 32.09 5.12
377 378 5.867716 TCTTAATCAACTTCTACAAGCCGTC 59.132 40.000 0.00 0.00 32.09 4.79
378 379 5.638234 GTCTTAATCAACTTCTACAAGCCGT 59.362 40.000 0.00 0.00 32.09 5.68
379 380 5.637810 TGTCTTAATCAACTTCTACAAGCCG 59.362 40.000 0.00 0.00 32.09 5.52
380 381 6.402658 GCTGTCTTAATCAACTTCTACAAGCC 60.403 42.308 0.00 0.00 32.09 4.35
381 382 6.370166 AGCTGTCTTAATCAACTTCTACAAGC 59.630 38.462 0.00 0.00 32.09 4.01
382 383 7.897575 AGCTGTCTTAATCAACTTCTACAAG 57.102 36.000 0.00 0.00 35.50 3.16
383 384 9.772973 TTAAGCTGTCTTAATCAACTTCTACAA 57.227 29.630 0.00 0.00 39.23 2.41
384 385 9.944376 ATTAAGCTGTCTTAATCAACTTCTACA 57.056 29.630 9.69 0.00 46.93 2.74
392 393 9.326413 GGCTAGTTATTAAGCTGTCTTAATCAA 57.674 33.333 15.45 9.29 46.93 2.57
393 394 8.482943 TGGCTAGTTATTAAGCTGTCTTAATCA 58.517 33.333 15.45 7.10 46.93 2.57
394 395 8.888579 TGGCTAGTTATTAAGCTGTCTTAATC 57.111 34.615 15.45 7.32 46.93 1.75
396 397 8.074613 TCTGGCTAGTTATTAAGCTGTCTTAA 57.925 34.615 0.00 6.71 45.65 1.85
397 398 7.655521 TCTGGCTAGTTATTAAGCTGTCTTA 57.344 36.000 0.00 0.00 38.80 2.10
398 399 6.546428 TCTGGCTAGTTATTAAGCTGTCTT 57.454 37.500 0.00 0.00 38.80 3.01
399 400 6.325028 TGATCTGGCTAGTTATTAAGCTGTCT 59.675 38.462 0.00 0.00 38.80 3.41
400 401 6.516718 TGATCTGGCTAGTTATTAAGCTGTC 58.483 40.000 0.00 0.00 38.80 3.51
401 402 6.485830 TGATCTGGCTAGTTATTAAGCTGT 57.514 37.500 0.00 0.00 38.80 4.40
402 403 9.311916 GATATGATCTGGCTAGTTATTAAGCTG 57.688 37.037 0.00 0.00 38.80 4.24
403 404 9.040259 TGATATGATCTGGCTAGTTATTAAGCT 57.960 33.333 0.00 0.00 38.80 3.74
404 405 9.658799 TTGATATGATCTGGCTAGTTATTAAGC 57.341 33.333 0.00 0.00 38.03 3.09
410 411 9.935241 GAATTCTTGATATGATCTGGCTAGTTA 57.065 33.333 0.00 0.00 0.00 2.24
411 412 8.435187 TGAATTCTTGATATGATCTGGCTAGTT 58.565 33.333 7.05 0.00 0.00 2.24
412 413 7.971201 TGAATTCTTGATATGATCTGGCTAGT 58.029 34.615 7.05 0.00 0.00 2.57
413 414 8.843885 TTGAATTCTTGATATGATCTGGCTAG 57.156 34.615 7.05 0.00 0.00 3.42
414 415 7.389884 GCTTGAATTCTTGATATGATCTGGCTA 59.610 37.037 7.05 0.00 0.00 3.93
415 416 6.207025 GCTTGAATTCTTGATATGATCTGGCT 59.793 38.462 7.05 0.00 0.00 4.75
416 417 6.380190 GCTTGAATTCTTGATATGATCTGGC 58.620 40.000 7.05 0.00 0.00 4.85
417 418 6.715718 AGGCTTGAATTCTTGATATGATCTGG 59.284 38.462 7.05 0.00 0.00 3.86
418 419 7.444487 TGAGGCTTGAATTCTTGATATGATCTG 59.556 37.037 7.05 0.00 0.00 2.90
419 420 7.515586 TGAGGCTTGAATTCTTGATATGATCT 58.484 34.615 7.05 0.00 0.00 2.75
420 421 7.094720 CCTGAGGCTTGAATTCTTGATATGATC 60.095 40.741 7.05 0.00 0.00 2.92
421 422 6.715718 CCTGAGGCTTGAATTCTTGATATGAT 59.284 38.462 7.05 0.00 0.00 2.45
422 423 6.060136 CCTGAGGCTTGAATTCTTGATATGA 58.940 40.000 7.05 0.00 0.00 2.15
423 424 5.278364 GCCTGAGGCTTGAATTCTTGATATG 60.278 44.000 17.96 0.00 46.69 1.78
424 425 4.826183 GCCTGAGGCTTGAATTCTTGATAT 59.174 41.667 17.96 0.00 46.69 1.63
425 426 4.202441 GCCTGAGGCTTGAATTCTTGATA 58.798 43.478 17.96 0.00 46.69 2.15
426 427 3.022406 GCCTGAGGCTTGAATTCTTGAT 58.978 45.455 17.96 0.00 46.69 2.57
427 428 2.440409 GCCTGAGGCTTGAATTCTTGA 58.560 47.619 17.96 0.00 46.69 3.02
428 429 2.935481 GCCTGAGGCTTGAATTCTTG 57.065 50.000 17.96 0.64 46.69 3.02
440 441 3.190878 GCATTTCGTGGCCTGAGG 58.809 61.111 3.32 0.00 0.00 3.86
447 448 1.197721 GAGTGTCAAGGCATTTCGTGG 59.802 52.381 0.00 0.00 0.00 4.94
448 449 1.872952 TGAGTGTCAAGGCATTTCGTG 59.127 47.619 0.00 0.00 0.00 4.35
449 450 2.254546 TGAGTGTCAAGGCATTTCGT 57.745 45.000 0.00 0.00 0.00 3.85
450 451 3.005554 AGATGAGTGTCAAGGCATTTCG 58.994 45.455 0.00 0.00 0.00 3.46
451 452 4.699257 AGAAGATGAGTGTCAAGGCATTTC 59.301 41.667 0.00 0.00 0.00 2.17
452 453 4.660168 AGAAGATGAGTGTCAAGGCATTT 58.340 39.130 0.00 0.00 0.00 2.32
453 454 4.298103 AGAAGATGAGTGTCAAGGCATT 57.702 40.909 0.00 0.00 0.00 3.56
454 455 3.996921 AGAAGATGAGTGTCAAGGCAT 57.003 42.857 0.00 0.00 0.00 4.40
455 456 5.426689 AATAGAAGATGAGTGTCAAGGCA 57.573 39.130 0.00 0.00 0.00 4.75
456 457 6.597280 AGAAAATAGAAGATGAGTGTCAAGGC 59.403 38.462 0.00 0.00 0.00 4.35
457 458 7.605691 ACAGAAAATAGAAGATGAGTGTCAAGG 59.394 37.037 0.00 0.00 0.00 3.61
458 459 8.545229 ACAGAAAATAGAAGATGAGTGTCAAG 57.455 34.615 0.00 0.00 0.00 3.02
459 460 8.908786 AACAGAAAATAGAAGATGAGTGTCAA 57.091 30.769 0.00 0.00 0.00 3.18
460 461 8.370940 AGAACAGAAAATAGAAGATGAGTGTCA 58.629 33.333 0.00 0.00 0.00 3.58
461 462 8.770438 AGAACAGAAAATAGAAGATGAGTGTC 57.230 34.615 0.00 0.00 0.00 3.67
471 472 9.547753 GCAGTCCATATAGAACAGAAAATAGAA 57.452 33.333 0.00 0.00 0.00 2.10
472 473 7.867909 CGCAGTCCATATAGAACAGAAAATAGA 59.132 37.037 0.00 0.00 0.00 1.98
473 474 7.653713 ACGCAGTCCATATAGAACAGAAAATAG 59.346 37.037 0.00 0.00 29.74 1.73
474 475 7.438160 CACGCAGTCCATATAGAACAGAAAATA 59.562 37.037 0.00 0.00 41.61 1.40
475 476 6.258727 CACGCAGTCCATATAGAACAGAAAAT 59.741 38.462 0.00 0.00 41.61 1.82
476 477 5.580691 CACGCAGTCCATATAGAACAGAAAA 59.419 40.000 0.00 0.00 41.61 2.29
477 478 5.105513 TCACGCAGTCCATATAGAACAGAAA 60.106 40.000 0.00 0.00 41.61 2.52
478 479 4.401202 TCACGCAGTCCATATAGAACAGAA 59.599 41.667 0.00 0.00 41.61 3.02
479 480 3.951680 TCACGCAGTCCATATAGAACAGA 59.048 43.478 0.00 0.00 41.61 3.41
480 481 4.294232 CTCACGCAGTCCATATAGAACAG 58.706 47.826 0.00 0.00 41.61 3.16
481 482 3.490933 GCTCACGCAGTCCATATAGAACA 60.491 47.826 0.00 0.00 41.61 3.18
482 483 3.053455 GCTCACGCAGTCCATATAGAAC 58.947 50.000 0.00 0.00 41.61 3.01
483 484 2.035961 GGCTCACGCAGTCCATATAGAA 59.964 50.000 0.00 0.00 41.61 2.10
484 485 1.613925 GGCTCACGCAGTCCATATAGA 59.386 52.381 0.00 0.00 41.61 1.98
485 486 2.071688 GGCTCACGCAGTCCATATAG 57.928 55.000 0.00 0.00 41.61 1.31
492 493 2.743928 CTTGGGGCTCACGCAGTC 60.744 66.667 0.00 0.00 41.61 3.51
496 497 4.752879 TACGCTTGGGGCTCACGC 62.753 66.667 5.64 5.64 39.13 5.34
497 498 2.813908 GTACGCTTGGGGCTCACG 60.814 66.667 0.00 0.00 39.13 4.35
498 499 2.813908 CGTACGCTTGGGGCTCAC 60.814 66.667 0.52 0.00 39.13 3.51
499 500 4.752879 GCGTACGCTTGGGGCTCA 62.753 66.667 31.95 0.00 39.13 4.26
503 504 3.124921 CTTGGCGTACGCTTGGGG 61.125 66.667 36.24 19.25 41.60 4.96
504 505 2.358247 ACTTGGCGTACGCTTGGG 60.358 61.111 36.24 24.91 41.60 4.12
505 506 2.860293 CACTTGGCGTACGCTTGG 59.140 61.111 36.24 26.46 41.60 3.61
506 507 2.173382 GCACTTGGCGTACGCTTG 59.827 61.111 36.24 26.90 41.60 4.01
515 516 5.234972 GCCATATAAAATTCTTGCACTTGGC 59.765 40.000 0.00 0.00 45.13 4.52
516 517 5.754890 GGCCATATAAAATTCTTGCACTTGG 59.245 40.000 0.00 0.00 0.00 3.61
517 518 5.459762 CGGCCATATAAAATTCTTGCACTTG 59.540 40.000 2.24 0.00 0.00 3.16
518 519 5.359576 TCGGCCATATAAAATTCTTGCACTT 59.640 36.000 2.24 0.00 0.00 3.16
519 520 4.887071 TCGGCCATATAAAATTCTTGCACT 59.113 37.500 2.24 0.00 0.00 4.40
520 521 5.181690 TCGGCCATATAAAATTCTTGCAC 57.818 39.130 2.24 0.00 0.00 4.57
521 522 5.587289 GTTCGGCCATATAAAATTCTTGCA 58.413 37.500 2.24 0.00 0.00 4.08
522 523 4.675114 CGTTCGGCCATATAAAATTCTTGC 59.325 41.667 2.24 0.00 0.00 4.01
523 524 5.816919 ACGTTCGGCCATATAAAATTCTTG 58.183 37.500 2.24 0.00 0.00 3.02
524 525 6.764560 AGTACGTTCGGCCATATAAAATTCTT 59.235 34.615 2.24 0.00 0.00 2.52
525 526 6.285990 AGTACGTTCGGCCATATAAAATTCT 58.714 36.000 2.24 0.00 0.00 2.40
526 527 6.535274 AGTACGTTCGGCCATATAAAATTC 57.465 37.500 2.24 0.00 0.00 2.17
527 528 6.017687 GGAAGTACGTTCGGCCATATAAAATT 60.018 38.462 2.24 0.00 35.80 1.82
528 529 5.467735 GGAAGTACGTTCGGCCATATAAAAT 59.532 40.000 2.24 0.00 35.80 1.82
529 530 4.810491 GGAAGTACGTTCGGCCATATAAAA 59.190 41.667 2.24 0.00 35.80 1.52
530 531 4.370917 GGAAGTACGTTCGGCCATATAAA 58.629 43.478 2.24 0.00 35.80 1.40
531 532 3.550639 CGGAAGTACGTTCGGCCATATAA 60.551 47.826 2.24 0.00 35.80 0.98
532 533 2.030893 CGGAAGTACGTTCGGCCATATA 60.031 50.000 2.24 0.00 35.80 0.86
533 534 1.269413 CGGAAGTACGTTCGGCCATAT 60.269 52.381 2.24 0.00 35.80 1.78
534 535 0.101040 CGGAAGTACGTTCGGCCATA 59.899 55.000 2.24 0.00 35.80 2.74
535 536 1.153706 CGGAAGTACGTTCGGCCAT 60.154 57.895 2.24 0.00 35.80 4.40
536 537 2.259204 CGGAAGTACGTTCGGCCA 59.741 61.111 2.24 0.00 35.80 5.36
537 538 2.507769 CCGGAAGTACGTTCGGCC 60.508 66.667 15.81 0.00 35.80 6.13
538 539 3.184003 GCCGGAAGTACGTTCGGC 61.184 66.667 32.82 32.82 43.09 5.54
539 540 2.507769 GGCCGGAAGTACGTTCGG 60.508 66.667 22.65 22.65 35.80 4.30
540 541 2.877582 CGGCCGGAAGTACGTTCG 60.878 66.667 20.10 2.10 35.80 3.95
541 542 2.507769 CCGGCCGGAAGTACGTTC 60.508 66.667 41.82 0.00 37.50 3.95
542 543 4.073200 CCCGGCCGGAAGTACGTT 62.073 66.667 45.44 0.00 37.50 3.99
558 559 3.984193 AAGGAGCATCTGCGTGCCC 62.984 63.158 5.10 6.48 46.19 5.36
559 560 1.986575 GAAAGGAGCATCTGCGTGCC 61.987 60.000 5.10 0.59 46.19 5.01
564 565 1.339438 TGAGTGGAAAGGAGCATCTGC 60.339 52.381 0.00 0.00 42.49 4.26
565 566 2.289882 TGTGAGTGGAAAGGAGCATCTG 60.290 50.000 0.00 0.00 33.73 2.90
566 567 1.980765 TGTGAGTGGAAAGGAGCATCT 59.019 47.619 0.00 0.00 33.73 2.90
567 568 2.479566 TGTGAGTGGAAAGGAGCATC 57.520 50.000 0.00 0.00 0.00 3.91
568 569 2.107204 AGTTGTGAGTGGAAAGGAGCAT 59.893 45.455 0.00 0.00 0.00 3.79
569 570 1.490490 AGTTGTGAGTGGAAAGGAGCA 59.510 47.619 0.00 0.00 0.00 4.26
570 571 2.262423 AGTTGTGAGTGGAAAGGAGC 57.738 50.000 0.00 0.00 0.00 4.70
571 572 3.316308 CCAAAGTTGTGAGTGGAAAGGAG 59.684 47.826 0.00 0.00 32.54 3.69
572 573 3.287222 CCAAAGTTGTGAGTGGAAAGGA 58.713 45.455 0.00 0.00 32.54 3.36
573 574 2.223805 GCCAAAGTTGTGAGTGGAAAGG 60.224 50.000 0.00 0.00 32.54 3.11
574 575 2.541588 CGCCAAAGTTGTGAGTGGAAAG 60.542 50.000 0.00 0.00 32.54 2.62
575 576 1.403679 CGCCAAAGTTGTGAGTGGAAA 59.596 47.619 0.00 0.00 32.54 3.13
576 577 1.021202 CGCCAAAGTTGTGAGTGGAA 58.979 50.000 0.00 0.00 32.54 3.53
577 578 0.817634 CCGCCAAAGTTGTGAGTGGA 60.818 55.000 0.00 0.00 32.54 4.02
578 579 0.817634 TCCGCCAAAGTTGTGAGTGG 60.818 55.000 0.00 0.00 0.00 4.00
579 580 1.002468 CTTCCGCCAAAGTTGTGAGTG 60.002 52.381 0.00 0.00 0.00 3.51
580 581 1.308998 CTTCCGCCAAAGTTGTGAGT 58.691 50.000 0.00 0.00 0.00 3.41
581 582 1.308998 ACTTCCGCCAAAGTTGTGAG 58.691 50.000 0.00 0.00 36.02 3.51
582 583 2.215196 GTACTTCCGCCAAAGTTGTGA 58.785 47.619 3.92 0.00 40.01 3.58
583 584 1.265905 GGTACTTCCGCCAAAGTTGTG 59.734 52.381 3.92 0.00 40.01 3.33
584 585 1.601166 GGTACTTCCGCCAAAGTTGT 58.399 50.000 3.92 0.00 40.01 3.32
595 596 3.683340 GGAAAATGAGACACGGTACTTCC 59.317 47.826 0.00 0.00 0.00 3.46
596 597 3.683340 GGGAAAATGAGACACGGTACTTC 59.317 47.826 0.00 0.00 0.00 3.01
597 598 3.326880 AGGGAAAATGAGACACGGTACTT 59.673 43.478 0.00 0.00 0.00 2.24
598 599 2.904434 AGGGAAAATGAGACACGGTACT 59.096 45.455 0.00 0.00 0.00 2.73
599 600 3.000727 CAGGGAAAATGAGACACGGTAC 58.999 50.000 0.00 0.00 0.00 3.34
600 601 2.901192 TCAGGGAAAATGAGACACGGTA 59.099 45.455 0.00 0.00 0.00 4.02
601 602 1.697432 TCAGGGAAAATGAGACACGGT 59.303 47.619 0.00 0.00 0.00 4.83
602 603 2.076863 GTCAGGGAAAATGAGACACGG 58.923 52.381 0.00 0.00 0.00 4.94
603 604 2.766313 TGTCAGGGAAAATGAGACACG 58.234 47.619 0.00 0.00 34.59 4.49
604 605 4.261614 GGTTTGTCAGGGAAAATGAGACAC 60.262 45.833 0.00 0.00 38.77 3.67
605 606 3.888930 GGTTTGTCAGGGAAAATGAGACA 59.111 43.478 0.00 0.00 37.43 3.41
606 607 3.888930 TGGTTTGTCAGGGAAAATGAGAC 59.111 43.478 0.00 0.00 0.00 3.36
607 608 4.177537 TGGTTTGTCAGGGAAAATGAGA 57.822 40.909 0.00 0.00 0.00 3.27
608 609 5.391950 CGTATGGTTTGTCAGGGAAAATGAG 60.392 44.000 0.00 0.00 0.00 2.90
609 610 4.457603 CGTATGGTTTGTCAGGGAAAATGA 59.542 41.667 0.00 0.00 0.00 2.57
610 611 4.380444 CCGTATGGTTTGTCAGGGAAAATG 60.380 45.833 0.00 0.00 0.00 2.32
611 612 3.761752 CCGTATGGTTTGTCAGGGAAAAT 59.238 43.478 0.00 0.00 0.00 1.82
612 613 3.150767 CCGTATGGTTTGTCAGGGAAAA 58.849 45.455 0.00 0.00 0.00 2.29
613 614 2.785562 CCGTATGGTTTGTCAGGGAAA 58.214 47.619 0.00 0.00 0.00 3.13
614 615 2.483014 CCGTATGGTTTGTCAGGGAA 57.517 50.000 0.00 0.00 0.00 3.97
626 627 0.106708 ATAGCCAGTGCACCGTATGG 59.893 55.000 14.63 15.73 41.13 2.74
627 628 1.220529 CATAGCCAGTGCACCGTATG 58.779 55.000 14.63 11.43 41.13 2.39
628 629 0.532862 GCATAGCCAGTGCACCGTAT 60.533 55.000 14.63 2.67 42.08 3.06
629 630 1.153449 GCATAGCCAGTGCACCGTA 60.153 57.895 14.63 0.06 42.08 4.02
630 631 2.436646 GCATAGCCAGTGCACCGT 60.437 61.111 14.63 0.00 42.08 4.83
631 632 1.308069 AAAGCATAGCCAGTGCACCG 61.308 55.000 14.63 2.26 44.87 4.94
632 633 0.890683 AAAAGCATAGCCAGTGCACC 59.109 50.000 14.63 0.00 44.87 5.01
633 634 1.135286 GGAAAAGCATAGCCAGTGCAC 60.135 52.381 9.40 9.40 44.87 4.57
634 635 1.176527 GGAAAAGCATAGCCAGTGCA 58.823 50.000 8.09 0.00 44.87 4.57
635 636 1.133790 CTGGAAAAGCATAGCCAGTGC 59.866 52.381 0.00 0.00 42.26 4.40
636 637 1.747355 CCTGGAAAAGCATAGCCAGTG 59.253 52.381 12.66 0.00 44.99 3.66
637 638 1.635487 TCCTGGAAAAGCATAGCCAGT 59.365 47.619 12.66 0.00 44.99 4.00
638 639 2.092753 TCTCCTGGAAAAGCATAGCCAG 60.093 50.000 0.00 0.00 45.81 4.85
639 640 1.915489 TCTCCTGGAAAAGCATAGCCA 59.085 47.619 0.00 0.00 0.00 4.75
640 641 2.092699 ACTCTCCTGGAAAAGCATAGCC 60.093 50.000 0.00 0.00 0.00 3.93
641 642 2.941720 CACTCTCCTGGAAAAGCATAGC 59.058 50.000 0.00 0.00 0.00 2.97
642 643 3.937706 CACACTCTCCTGGAAAAGCATAG 59.062 47.826 0.00 0.00 0.00 2.23
643 644 3.327757 ACACACTCTCCTGGAAAAGCATA 59.672 43.478 0.00 0.00 0.00 3.14
644 645 2.107204 ACACACTCTCCTGGAAAAGCAT 59.893 45.455 0.00 0.00 0.00 3.79
645 646 1.490490 ACACACTCTCCTGGAAAAGCA 59.510 47.619 0.00 0.00 0.00 3.91
646 647 1.876156 CACACACTCTCCTGGAAAAGC 59.124 52.381 0.00 0.00 0.00 3.51
647 648 2.874701 CACACACACTCTCCTGGAAAAG 59.125 50.000 0.00 0.88 0.00 2.27
648 649 2.917933 CACACACACTCTCCTGGAAAA 58.082 47.619 0.00 0.00 0.00 2.29
649 650 1.475034 GCACACACACTCTCCTGGAAA 60.475 52.381 0.00 0.00 0.00 3.13
650 651 0.106708 GCACACACACTCTCCTGGAA 59.893 55.000 0.00 0.00 0.00 3.53
651 652 1.748403 GCACACACACTCTCCTGGA 59.252 57.895 0.00 0.00 0.00 3.86
652 653 1.665916 CGCACACACACTCTCCTGG 60.666 63.158 0.00 0.00 0.00 4.45
653 654 2.313172 GCGCACACACACTCTCCTG 61.313 63.158 0.30 0.00 0.00 3.86
654 655 2.029666 GCGCACACACACTCTCCT 59.970 61.111 0.30 0.00 0.00 3.69
655 656 3.406361 CGCGCACACACACTCTCC 61.406 66.667 8.75 0.00 0.00 3.71
656 657 4.064491 GCGCGCACACACACTCTC 62.064 66.667 29.10 0.00 0.00 3.20
657 658 4.889856 TGCGCGCACACACACTCT 62.890 61.111 33.09 0.00 0.00 3.24
695 696 0.098376 GTGGTGCTAGTACGTCCTCG 59.902 60.000 4.80 0.00 43.34 4.63
696 697 0.098376 CGTGGTGCTAGTACGTCCTC 59.902 60.000 4.80 0.00 33.48 3.71
697 698 1.310933 CCGTGGTGCTAGTACGTCCT 61.311 60.000 4.80 0.00 36.17 3.85
698 699 1.138247 CCGTGGTGCTAGTACGTCC 59.862 63.158 4.80 0.00 36.17 4.79
699 700 1.515736 GCCGTGGTGCTAGTACGTC 60.516 63.158 4.80 0.05 36.17 4.34
700 701 2.270257 TGCCGTGGTGCTAGTACGT 61.270 57.895 4.80 0.00 36.17 3.57
701 702 1.804326 GTGCCGTGGTGCTAGTACG 60.804 63.158 4.80 4.73 37.55 3.67
702 703 1.804326 CGTGCCGTGGTGCTAGTAC 60.804 63.158 1.77 1.77 0.00 2.73
703 704 2.569657 CGTGCCGTGGTGCTAGTA 59.430 61.111 0.00 0.00 0.00 1.82
704 705 4.373116 CCGTGCCGTGGTGCTAGT 62.373 66.667 0.00 0.00 0.00 2.57
729 730 3.188786 CGGTGAGTTAGCGCCAGC 61.189 66.667 2.29 2.83 43.88 4.85
735 736 2.508663 GCCGGTCGGTGAGTTAGC 60.509 66.667 11.25 0.00 37.65 3.09
751 752 3.864686 CATAGCCACACGGTGCGC 61.865 66.667 8.30 10.27 32.66 6.09
752 753 3.864686 GCATAGCCACACGGTGCG 61.865 66.667 8.30 0.00 31.34 5.34
753 754 3.864686 CGCATAGCCACACGGTGC 61.865 66.667 8.30 0.00 31.34 5.01
754 755 3.864686 GCGCATAGCCACACGGTG 61.865 66.667 0.30 6.58 40.81 4.94
764 765 0.179094 TTTACTCCCGTGGCGCATAG 60.179 55.000 10.83 0.00 0.00 2.23
765 766 0.179094 CTTTACTCCCGTGGCGCATA 60.179 55.000 10.83 0.00 0.00 3.14
766 767 1.449601 CTTTACTCCCGTGGCGCAT 60.450 57.895 10.83 0.00 0.00 4.73
767 768 2.047655 CTTTACTCCCGTGGCGCA 60.048 61.111 10.83 0.00 0.00 6.09
768 769 2.047560 ACTTTACTCCCGTGGCGC 60.048 61.111 0.00 0.00 0.00 6.53
769 770 0.736325 CAGACTTTACTCCCGTGGCG 60.736 60.000 0.00 0.00 0.00 5.69
770 771 0.320697 ACAGACTTTACTCCCGTGGC 59.679 55.000 0.00 0.00 0.00 5.01
771 772 2.833631 AACAGACTTTACTCCCGTGG 57.166 50.000 0.00 0.00 0.00 4.94
772 773 6.424683 GTTTAAAACAGACTTTACTCCCGTG 58.575 40.000 0.00 0.00 0.00 4.94
773 774 5.528690 GGTTTAAAACAGACTTTACTCCCGT 59.471 40.000 0.00 0.00 0.00 5.28
774 775 5.761726 AGGTTTAAAACAGACTTTACTCCCG 59.238 40.000 5.94 0.00 0.00 5.14
871 873 5.080969 AGTTAAGGACGAAAATGATCGGA 57.919 39.130 5.52 0.00 46.82 4.55
1778 1859 6.575267 CATTGTCATCTGCCATTTCCATTTA 58.425 36.000 0.00 0.00 0.00 1.40
1909 2019 6.231258 TGAGTCCTAACTAGTGATCGACTA 57.769 41.667 12.56 5.34 35.28 2.59
1910 2020 5.100344 TGAGTCCTAACTAGTGATCGACT 57.900 43.478 12.47 12.47 35.28 4.18
1911 2021 5.333492 CGATGAGTCCTAACTAGTGATCGAC 60.333 48.000 0.00 0.33 35.03 4.20
1912 2022 4.750598 CGATGAGTCCTAACTAGTGATCGA 59.249 45.833 0.00 0.00 35.03 3.59
1913 2023 4.750598 TCGATGAGTCCTAACTAGTGATCG 59.249 45.833 0.00 0.00 35.28 3.69
1914 2024 5.761234 AGTCGATGAGTCCTAACTAGTGATC 59.239 44.000 0.00 0.00 35.28 2.92
1915 2025 5.686753 AGTCGATGAGTCCTAACTAGTGAT 58.313 41.667 0.00 0.00 35.28 3.06
1916 2026 5.100344 AGTCGATGAGTCCTAACTAGTGA 57.900 43.478 0.00 0.00 35.28 3.41
1917 2027 6.050432 ACTAGTCGATGAGTCCTAACTAGTG 58.950 44.000 17.19 0.00 38.07 2.74
1918 2028 6.237887 ACTAGTCGATGAGTCCTAACTAGT 57.762 41.667 14.27 14.27 35.28 2.57
1919 2029 6.774354 GACTAGTCGATGAGTCCTAACTAG 57.226 45.833 7.22 13.38 36.82 2.57
2021 2133 3.077617 ACTAGCCGTCGACTAGTCC 57.922 57.895 14.65 3.24 45.65 3.85
2032 2144 3.253677 AGTCGATGATTCCTAACTAGCCG 59.746 47.826 0.00 0.00 0.00 5.52
2034 2146 6.563222 ACTAGTCGATGATTCCTAACTAGC 57.437 41.667 7.15 0.00 39.71 3.42
2063 2233 4.655186 ACTAGTCGATGAGTCCTACCTAGT 59.345 45.833 0.00 0.00 0.00 2.57
2080 2250 1.015868 CCTCCCGTCTTCGACTAGTC 58.984 60.000 13.18 13.18 39.71 2.59
2081 2251 0.327591 ACCTCCCGTCTTCGACTAGT 59.672 55.000 0.00 0.00 39.71 2.57
2082 2252 1.461559 AACCTCCCGTCTTCGACTAG 58.538 55.000 0.00 0.00 39.71 2.57
2083 2253 1.915141 AAACCTCCCGTCTTCGACTA 58.085 50.000 0.00 0.00 39.71 2.59
2084 2254 1.915141 TAAACCTCCCGTCTTCGACT 58.085 50.000 0.00 0.00 39.71 4.18
2085 2255 2.955477 ATAAACCTCCCGTCTTCGAC 57.045 50.000 0.00 0.00 39.71 4.20
2086 2256 3.319972 CCATATAAACCTCCCGTCTTCGA 59.680 47.826 0.00 0.00 39.71 3.71
2087 2257 3.069158 ACCATATAAACCTCCCGTCTTCG 59.931 47.826 0.00 0.00 0.00 3.79
2088 2258 4.684484 ACCATATAAACCTCCCGTCTTC 57.316 45.455 0.00 0.00 0.00 2.87
2089 2259 6.564557 TTAACCATATAAACCTCCCGTCTT 57.435 37.500 0.00 0.00 0.00 3.01
2090 2260 6.564557 TTTAACCATATAAACCTCCCGTCT 57.435 37.500 0.00 0.00 0.00 4.18
2122 2292 7.554211 TGAAATCACTATTGCATTGCCAATTA 58.446 30.769 6.12 0.00 36.80 1.40
2456 2643 0.616111 GAACAGGGAGAGGCTCAGGA 60.616 60.000 18.26 0.00 31.08 3.86
2493 2692 3.107601 TGGCAACTAGCTCTAATCCTGT 58.892 45.455 0.00 0.00 44.79 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.