Multiple sequence alignment - TraesCS6D01G329200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS6D01G329200 chr6D 100.000 2540 0 0 1 2540 433489848 433492387 0.000000e+00 4691.0
1 TraesCS6D01G329200 chr6A 92.342 2246 102 32 338 2540 579504117 579506335 0.000000e+00 3131.0
2 TraesCS6D01G329200 chr6B 92.818 1643 73 9 11 1628 654774185 654775807 0.000000e+00 2338.0
3 TraesCS6D01G329200 chr7A 83.962 318 48 3 15 331 445215408 445215093 4.110000e-78 302.0
4 TraesCS6D01G329200 chr1D 81.682 333 53 7 1 331 35087508 35087834 1.160000e-68 270.0
5 TraesCS6D01G329200 chr5A 79.928 279 43 11 40 313 76975377 76975107 2.580000e-45 193.0
6 TraesCS6D01G329200 chr7B 78.610 187 35 4 24 209 704109070 704109252 4.440000e-23 119.0
7 TraesCS6D01G329200 chr1B 85.714 84 10 1 105 188 659560523 659560604 1.250000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS6D01G329200 chr6D 433489848 433492387 2539 False 4691 4691 100.000 1 2540 1 chr6D.!!$F1 2539
1 TraesCS6D01G329200 chr6A 579504117 579506335 2218 False 3131 3131 92.342 338 2540 1 chr6A.!!$F1 2202
2 TraesCS6D01G329200 chr6B 654774185 654775807 1622 False 2338 2338 92.818 11 1628 1 chr6B.!!$F1 1617

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 332 0.178767 TCATCGTTGGAGATGCCCTG 59.821 55.0 2.38 0.0 45.57 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1599 1662 0.249953 CTGCAAAACATGGCAAGGCA 60.25 50.0 0.0 0.0 39.93 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.790437 ATGAGGAGTGGGCGCCAG 61.790 66.667 30.85 0.00 37.01 4.85
72 73 7.116736 AGGGTTTAGTCCAAATATGTCGAAAT 58.883 34.615 0.00 0.00 0.00 2.17
91 92 1.093972 TTGTATTGCATGTGCTCCGG 58.906 50.000 6.55 0.00 42.66 5.14
153 154 8.555166 TGTCAAAGTTTCAATGAAAATCGTAC 57.445 30.769 10.27 8.46 33.14 3.67
157 158 6.308371 AGTTTCAATGAAAATCGTACGGTT 57.692 33.333 16.52 12.53 33.14 4.44
169 170 7.611821 AAATCGTACGGTTTGTGTAAATTTG 57.388 32.000 24.81 0.00 0.00 2.32
240 241 2.895372 GCGGCTACGGTTGGATGG 60.895 66.667 0.00 0.00 41.36 3.51
244 245 0.249911 GGCTACGGTTGGATGGCTAG 60.250 60.000 0.00 0.00 0.00 3.42
259 260 2.365617 TGGCTAGCTCCTACATAAGTGC 59.634 50.000 15.72 0.00 0.00 4.40
278 279 0.389166 CTCGCAGTCTTGTCTCCACC 60.389 60.000 0.00 0.00 0.00 4.61
296 297 1.063649 CGGTCCACAGACGATACGG 59.936 63.158 0.00 0.00 44.54 4.02
315 316 3.277142 GGTGTCCGATTTAAGGGTCAT 57.723 47.619 0.00 0.00 0.00 3.06
316 317 3.203716 GGTGTCCGATTTAAGGGTCATC 58.796 50.000 0.00 0.00 0.00 2.92
331 332 0.178767 TCATCGTTGGAGATGCCCTG 59.821 55.000 2.38 0.00 45.57 4.45
365 366 0.549469 AACGAACCCTTGGGTGAACT 59.451 50.000 12.67 0.00 0.00 3.01
387 388 1.320344 TGGAGCGCACGGATCTACTT 61.320 55.000 11.47 0.00 0.00 2.24
519 520 2.478335 TTTACTTCCGGGGCAGGCAG 62.478 60.000 0.00 0.00 0.00 4.85
542 549 0.236711 GCATCCCGAGCGAATGAATG 59.763 55.000 8.66 0.00 0.00 2.67
628 641 4.081087 TGAAAACCCAAAACAAATCCCGAA 60.081 37.500 0.00 0.00 0.00 4.30
679 692 2.310538 CCAAGTCAAACAAGAAGCCCT 58.689 47.619 0.00 0.00 0.00 5.19
771 801 2.237751 GCACCGCGCGATCAGTAAT 61.238 57.895 34.63 2.49 0.00 1.89
772 802 0.937699 GCACCGCGCGATCAGTAATA 60.938 55.000 34.63 0.00 0.00 0.98
773 803 1.483316 CACCGCGCGATCAGTAATAA 58.517 50.000 34.63 0.00 0.00 1.40
774 804 1.452025 CACCGCGCGATCAGTAATAAG 59.548 52.381 34.63 12.34 0.00 1.73
775 805 1.066605 ACCGCGCGATCAGTAATAAGT 59.933 47.619 34.63 13.09 0.00 2.24
776 806 2.291465 ACCGCGCGATCAGTAATAAGTA 59.709 45.455 34.63 0.00 0.00 2.24
777 807 2.655474 CCGCGCGATCAGTAATAAGTAC 59.345 50.000 34.63 0.00 0.00 2.73
778 808 3.294102 CGCGCGATCAGTAATAAGTACA 58.706 45.455 28.94 0.00 34.88 2.90
819 849 6.769134 TCTAGCTGTTACTAGTTGCATGTA 57.231 37.500 0.00 0.00 40.50 2.29
824 854 8.110860 AGCTGTTACTAGTTGCATGTAAAAAT 57.889 30.769 0.00 0.00 0.00 1.82
901 937 3.792053 CTAGCCCCGGTCGATGTGC 62.792 68.421 0.00 0.00 0.00 4.57
1148 1206 3.414700 GTTCGTGGTGCCGCAGAG 61.415 66.667 0.00 0.00 0.00 3.35
1523 1581 1.243342 CCGCTGGGCAACATCTTTGA 61.243 55.000 0.00 0.00 39.74 2.69
1545 1603 1.762460 GAGGCCCTTCTGATCCCGA 60.762 63.158 0.00 0.00 0.00 5.14
1546 1604 1.306997 AGGCCCTTCTGATCCCGAA 60.307 57.895 0.00 0.00 0.00 4.30
1547 1605 1.153147 GGCCCTTCTGATCCCGAAC 60.153 63.158 0.00 0.00 0.00 3.95
1599 1662 1.299541 CGTGTGCTTCTGGTTGAGTT 58.700 50.000 0.00 0.00 0.00 3.01
1601 1664 1.024271 TGTGCTTCTGGTTGAGTTGC 58.976 50.000 0.00 0.00 0.00 4.17
1667 1734 5.678483 ACTGTATTAGTTATTACGACGTGCG 59.322 40.000 11.56 0.00 40.88 5.34
1708 1778 8.375493 TGTTATGGTGAGAGTAAAGAGGTTAT 57.625 34.615 0.00 0.00 0.00 1.89
1709 1779 8.258007 TGTTATGGTGAGAGTAAAGAGGTTATG 58.742 37.037 0.00 0.00 0.00 1.90
1710 1780 5.086104 TGGTGAGAGTAAAGAGGTTATGC 57.914 43.478 0.00 0.00 0.00 3.14
1711 1781 4.777896 TGGTGAGAGTAAAGAGGTTATGCT 59.222 41.667 0.00 0.00 0.00 3.79
1714 1784 6.092807 GGTGAGAGTAAAGAGGTTATGCTTTG 59.907 42.308 0.00 0.00 35.98 2.77
1715 1785 5.643777 TGAGAGTAAAGAGGTTATGCTTTGC 59.356 40.000 0.00 0.00 37.10 3.68
1838 1909 8.895845 CACTTCGAATTTTTGTAAATCAGTCAG 58.104 33.333 0.00 0.00 32.85 3.51
1874 1945 8.707839 CACAGTGACAAGTTTAATGTTGTTTTT 58.292 29.630 0.00 0.00 37.02 1.94
1902 1973 9.669353 CTATTGTTATGGTGCATTTCAAGATAC 57.331 33.333 0.00 0.00 0.00 2.24
1970 2041 8.032952 TCTAAATATGATCGATGTGCATTTCC 57.967 34.615 0.54 0.00 0.00 3.13
1989 2060 1.134907 CCACTGCCCAAATTCATGCTC 60.135 52.381 0.00 0.00 0.00 4.26
2006 2077 2.622942 TGCTCTGTCCCACAATTGAAAC 59.377 45.455 13.59 5.04 0.00 2.78
2061 2132 5.678483 GTGATTACTTGTAATCTTGCATGCG 59.322 40.000 24.80 0.00 37.36 4.73
2144 2215 0.741221 GTAGCGGCACCAAAGAGGAG 60.741 60.000 1.45 0.00 41.22 3.69
2155 2226 2.229784 CCAAAGAGGAGAAACACCATGC 59.770 50.000 0.00 0.00 41.22 4.06
2183 2254 2.014093 GAAGACGTTCAGCCATCGCG 62.014 60.000 0.00 0.00 41.18 5.87
2210 2281 6.902224 TCGGTCGCCAATTATATATGATTG 57.098 37.500 18.72 18.72 34.61 2.67
2286 2358 7.720074 ACTTTCTTCGTTAAAGGAGAAAAGGAT 59.280 33.333 20.80 8.42 38.09 3.24
2297 2369 3.056322 GGAGAAAAGGATGTGCAAAGCAT 60.056 43.478 0.00 0.00 41.91 3.79
2351 2423 5.428253 TGTCTATATTGCCAACACCTTCTC 58.572 41.667 0.00 0.00 0.00 2.87
2366 2438 3.773667 ACCTTCTCTGCTGATGATCTTCA 59.226 43.478 10.59 10.59 0.00 3.02
2367 2439 4.141892 ACCTTCTCTGCTGATGATCTTCAG 60.142 45.833 26.56 26.56 44.87 3.02
2368 2440 4.141892 CCTTCTCTGCTGATGATCTTCAGT 60.142 45.833 29.24 0.00 44.10 3.41
2370 2442 5.008619 TCTCTGCTGATGATCTTCAGTTC 57.991 43.478 29.24 18.93 44.10 3.01
2371 2443 4.465305 TCTCTGCTGATGATCTTCAGTTCA 59.535 41.667 29.24 21.46 44.10 3.18
2372 2444 5.128991 TCTCTGCTGATGATCTTCAGTTCAT 59.871 40.000 29.24 0.98 44.10 2.57
2373 2445 5.116882 TCTGCTGATGATCTTCAGTTCATG 58.883 41.667 29.24 18.57 44.10 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.187946 GCCCACTCCTCATGTCCG 59.812 66.667 0.00 0.00 0.00 4.79
1 2 2.187946 CGCCCACTCCTCATGTCC 59.812 66.667 0.00 0.00 0.00 4.02
2 3 2.512515 GCGCCCACTCCTCATGTC 60.513 66.667 0.00 0.00 0.00 3.06
3 4 4.101448 GGCGCCCACTCCTCATGT 62.101 66.667 18.11 0.00 0.00 3.21
4 5 4.100084 TGGCGCCCACTCCTCATG 62.100 66.667 26.77 0.00 0.00 3.07
5 6 3.790437 CTGGCGCCCACTCCTCAT 61.790 66.667 26.77 0.00 0.00 2.90
22 23 4.491676 TCTAACACAGTCTAAATGACCGC 58.508 43.478 0.00 0.00 46.46 5.68
37 38 8.803397 ATTTGGACTAAACCCTATTCTAACAC 57.197 34.615 0.00 0.00 0.00 3.32
54 55 7.915397 GCAATACAATTTCGACATATTTGGACT 59.085 33.333 0.00 0.00 0.00 3.85
72 73 1.093972 CCGGAGCACATGCAATACAA 58.906 50.000 6.64 0.00 45.16 2.41
77 78 1.164411 CTAAACCGGAGCACATGCAA 58.836 50.000 9.46 0.00 45.16 4.08
126 127 8.647143 ACGATTTTCATTGAAACTTTGACAAT 57.353 26.923 11.30 0.44 35.10 2.71
138 139 5.007823 ACACAAACCGTACGATTTTCATTGA 59.992 36.000 18.76 0.00 0.00 2.57
153 154 5.896922 TTGATGCAAATTTACACAAACCG 57.103 34.783 0.00 0.00 0.00 4.44
188 189 7.765819 GGAGACATTTTGAAGGGAATTTAATGG 59.234 37.037 0.00 0.00 0.00 3.16
230 231 1.227674 GGAGCTAGCCATCCAACCG 60.228 63.158 16.21 0.00 35.54 4.44
240 241 3.610585 CGAGCACTTATGTAGGAGCTAGC 60.611 52.174 6.62 6.62 38.81 3.42
244 245 1.202417 TGCGAGCACTTATGTAGGAGC 60.202 52.381 0.00 0.00 0.00 4.70
259 260 0.389166 GGTGGAGACAAGACTGCGAG 60.389 60.000 0.00 0.00 46.06 5.03
278 279 1.063649 CCGTATCGTCTGTGGACCG 59.936 63.158 0.00 0.00 39.15 4.79
296 297 2.864343 CGATGACCCTTAAATCGGACAC 59.136 50.000 0.00 0.00 39.54 3.67
315 316 0.616395 TACCAGGGCATCTCCAACGA 60.616 55.000 0.00 0.00 36.21 3.85
316 317 0.251916 TTACCAGGGCATCTCCAACG 59.748 55.000 0.00 0.00 36.21 4.10
331 332 3.431233 GGTTCGTTTGCTCTACTGTTACC 59.569 47.826 0.00 0.00 0.00 2.85
365 366 4.819761 GATCCGTGCGCTCCAGCA 62.820 66.667 9.73 0.00 45.96 4.41
387 388 6.014242 CACAATATAGGATCAAGGGACTAGCA 60.014 42.308 0.00 0.00 38.49 3.49
519 520 4.838152 TTCGCTCGGGATGCTGCC 62.838 66.667 0.00 0.00 0.00 4.85
522 523 0.107456 ATTCATTCGCTCGGGATGCT 59.893 50.000 0.00 0.00 0.00 3.79
523 524 0.236711 CATTCATTCGCTCGGGATGC 59.763 55.000 0.00 0.00 0.00 3.91
533 540 4.036027 CAGGTCAAAGGATCCATTCATTCG 59.964 45.833 15.82 0.00 0.00 3.34
542 549 1.034292 GCCTGCAGGTCAAAGGATCC 61.034 60.000 32.81 2.48 37.57 3.36
628 641 2.007049 GCTTGGCAGCAGTGTACGTAT 61.007 52.381 0.00 0.00 46.49 3.06
657 670 1.341209 GGCTTCTTGTTTGACTTGGGG 59.659 52.381 0.00 0.00 0.00 4.96
702 715 2.043992 CATTTCATGTGATGGGGCCAT 58.956 47.619 4.39 0.00 39.69 4.40
703 716 1.006878 TCATTTCATGTGATGGGGCCA 59.993 47.619 4.39 0.00 0.00 5.36
704 717 1.779221 TCATTTCATGTGATGGGGCC 58.221 50.000 0.00 0.00 0.00 5.80
705 718 3.551454 CGAATCATTTCATGTGATGGGGC 60.551 47.826 9.91 0.00 36.49 5.80
706 719 3.884693 TCGAATCATTTCATGTGATGGGG 59.115 43.478 9.91 0.07 36.49 4.96
707 720 5.335426 GGATCGAATCATTTCATGTGATGGG 60.335 44.000 9.91 1.95 36.49 4.00
708 721 5.239963 TGGATCGAATCATTTCATGTGATGG 59.760 40.000 9.91 2.22 36.49 3.51
709 722 6.308371 TGGATCGAATCATTTCATGTGATG 57.692 37.500 0.00 2.18 36.49 3.07
710 723 6.072119 CCATGGATCGAATCATTTCATGTGAT 60.072 38.462 5.56 0.00 37.91 3.06
771 801 9.835389 GAAGACTTAGGAGATCTACTGTACTTA 57.165 37.037 18.41 0.00 0.00 2.24
772 802 8.554011 AGAAGACTTAGGAGATCTACTGTACTT 58.446 37.037 18.41 15.72 0.00 2.24
773 803 8.097791 AGAAGACTTAGGAGATCTACTGTACT 57.902 38.462 18.41 8.56 0.00 2.73
774 804 9.485206 CTAGAAGACTTAGGAGATCTACTGTAC 57.515 40.741 18.41 6.46 0.00 2.90
775 805 8.152246 GCTAGAAGACTTAGGAGATCTACTGTA 58.848 40.741 18.41 4.63 0.00 2.74
776 806 6.996282 GCTAGAAGACTTAGGAGATCTACTGT 59.004 42.308 18.41 7.73 0.00 3.55
777 807 7.173218 CAGCTAGAAGACTTAGGAGATCTACTG 59.827 44.444 18.41 4.12 0.00 2.74
778 808 7.147373 ACAGCTAGAAGACTTAGGAGATCTACT 60.147 40.741 13.29 13.29 0.00 2.57
795 825 6.037786 ACATGCAACTAGTAACAGCTAGAA 57.962 37.500 0.00 0.00 40.54 2.10
901 937 5.426504 CTTCAAGCCTGGCCTCTATATATG 58.573 45.833 16.57 1.31 0.00 1.78
1046 1104 1.803289 CACGAGAGCAGGACGATGA 59.197 57.895 0.00 0.00 0.00 2.92
1120 1178 3.782244 CACGAACTGCTGCGCCTC 61.782 66.667 4.18 0.00 0.00 4.70
1356 1414 3.913163 CGGACTTGAAGTCGAAGTAGTTC 59.087 47.826 18.13 0.00 45.96 3.01
1523 1581 1.045911 GGATCAGAAGGGCCTCTCGT 61.046 60.000 6.46 0.00 0.00 4.18
1545 1603 0.389948 GGCTTGACGGACGAGATGTT 60.390 55.000 0.00 0.00 31.94 2.71
1546 1604 1.215647 GGCTTGACGGACGAGATGT 59.784 57.895 0.00 0.00 31.94 3.06
1547 1605 1.874019 CGGCTTGACGGACGAGATG 60.874 63.158 0.00 0.00 40.66 2.90
1599 1662 0.249953 CTGCAAAACATGGCAAGGCA 60.250 50.000 0.00 0.00 39.93 4.75
1601 1664 2.243602 AACTGCAAAACATGGCAAGG 57.756 45.000 0.00 0.00 39.93 3.61
1644 1711 5.903530 TCGCACGTCGTAATAACTAATACAG 59.096 40.000 0.00 0.00 39.67 2.74
1645 1712 5.805229 TCGCACGTCGTAATAACTAATACA 58.195 37.500 0.00 0.00 39.67 2.29
1646 1713 5.904080 ACTCGCACGTCGTAATAACTAATAC 59.096 40.000 0.00 0.00 39.67 1.89
1647 1714 6.048073 ACTCGCACGTCGTAATAACTAATA 57.952 37.500 0.00 0.00 39.67 0.98
1648 1715 4.913376 ACTCGCACGTCGTAATAACTAAT 58.087 39.130 0.00 0.00 39.67 1.73
1667 1734 8.892723 TCACCATAACATGATGTAAATCAACTC 58.107 33.333 0.00 0.00 33.83 3.01
1708 1778 2.098934 ACAAAACTCATGACGCAAAGCA 59.901 40.909 0.00 0.00 0.00 3.91
1709 1779 2.468777 CACAAAACTCATGACGCAAAGC 59.531 45.455 0.00 0.00 0.00 3.51
1710 1780 2.468777 GCACAAAACTCATGACGCAAAG 59.531 45.455 0.00 0.00 0.00 2.77
1711 1781 2.159324 TGCACAAAACTCATGACGCAAA 60.159 40.909 0.00 0.00 30.73 3.68
1714 1784 1.980844 CATGCACAAAACTCATGACGC 59.019 47.619 0.00 0.00 39.80 5.19
1715 1785 3.541071 TCATGCACAAAACTCATGACG 57.459 42.857 0.00 0.00 40.91 4.35
1802 1873 4.928661 AAATTCGAAGTGACCGAGAATG 57.071 40.909 3.35 0.00 37.35 2.67
1838 1909 6.619801 AACTTGTCACTGTGGAGTTTATTC 57.380 37.500 8.11 0.00 0.00 1.75
1874 1945 5.911378 TGAAATGCACCATAACAATAGCA 57.089 34.783 0.00 0.00 36.34 3.49
1902 1973 6.986424 TGCATGATACGTACTAAGATTTCG 57.014 37.500 0.00 0.00 0.00 3.46
1970 2041 1.822990 AGAGCATGAATTTGGGCAGTG 59.177 47.619 0.00 0.00 0.00 3.66
1989 2060 1.953686 ACGGTTTCAATTGTGGGACAG 59.046 47.619 5.13 4.10 41.80 3.51
2022 2093 9.566432 ACAAGTAATCACAAGAAAGAGATTTCT 57.434 29.630 0.00 0.00 42.62 2.52
2105 2176 1.202417 CGAGCACGAATCCCACATACT 60.202 52.381 0.00 0.00 42.66 2.12
2144 2215 0.958822 ACTTTCGGGCATGGTGTTTC 59.041 50.000 0.00 0.00 0.00 2.78
2155 2226 1.792949 CTGAACGTCTTCACTTTCGGG 59.207 52.381 0.00 0.00 34.78 5.14
2189 2260 6.119536 TCCCAATCATATATAATTGGCGACC 58.880 40.000 19.01 0.00 46.99 4.79
2193 2264 8.052748 TGGTACTCCCAATCATATATAATTGGC 58.947 37.037 19.01 7.59 46.99 4.52
2210 2281 8.803235 AGAAAAATTATGAAACTTGGTACTCCC 58.197 33.333 0.00 0.00 0.00 4.30
2271 2343 5.278957 GCTTTGCACATCCTTTTCTCCTTTA 60.279 40.000 0.00 0.00 0.00 1.85
2273 2345 3.006217 GCTTTGCACATCCTTTTCTCCTT 59.994 43.478 0.00 0.00 0.00 3.36
2286 2358 0.536233 ACGGTGGTATGCTTTGCACA 60.536 50.000 0.00 0.00 43.04 4.57
2297 2369 2.147958 GTTGAAAGATGCACGGTGGTA 58.852 47.619 10.60 0.00 0.00 3.25
2366 2438 1.376649 AAGGGGAGGAAGCATGAACT 58.623 50.000 0.00 0.00 0.00 3.01
2367 2439 2.222227 AAAGGGGAGGAAGCATGAAC 57.778 50.000 0.00 0.00 0.00 3.18
2368 2440 4.608170 AATAAAGGGGAGGAAGCATGAA 57.392 40.909 0.00 0.00 0.00 2.57
2370 2442 5.200483 TGTTAATAAAGGGGAGGAAGCATG 58.800 41.667 0.00 0.00 0.00 4.06
2371 2443 5.466127 TGTTAATAAAGGGGAGGAAGCAT 57.534 39.130 0.00 0.00 0.00 3.79
2372 2444 4.938575 TGTTAATAAAGGGGAGGAAGCA 57.061 40.909 0.00 0.00 0.00 3.91
2373 2445 6.831868 TGTAATGTTAATAAAGGGGAGGAAGC 59.168 38.462 0.00 0.00 0.00 3.86
2436 2508 9.762933 TGAAACTTGATTTTAAAGAAATGGGAG 57.237 29.630 0.00 0.00 0.00 4.30
2456 2528 8.829612 GTTTGAATTGGTTGATGATTTGAAACT 58.170 29.630 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.